5317 174 22 8 chr11 31 255 -150783298 - MER4-int LTR ERV1 -1716 5821 5602 242 56 28 0 chr11 255 291 -150783262 + (TA)n Simple_repeat Simple_repeat 1 37 0 5317 174 22 8 chr11 291 1126 -150782427 - MER4-int LTR ERV1 -1935 5602 4747 878 93 34 118 chr11 1128 1259 -150782294 - LTR8 LTR ERV1 -504 187 77 2031 118 10 10 chr11 1259 1556 -150781997 + AluSq SINE Alu 1 297 -16 878 93 34 118 chr11 1556 1628 -150781925 - LTR8 LTR ERV1 -614 77 1 364 210 34 125 chr11 1644 1885 -150781668 - MER4-int LTR ERV1 -3658 1982 1091 278 233 50 53 chr11 1895 2100 -150781453 - MER34C LTR ERV1 -172 413 154 2238 95 0 0 chr11 2180 2476 -150781077 + AluY SINE Alu 1 296 -15 353 191 12 12 chr11 2687 2771 -150780782 - MER4-int LTR ERV1 -6697 840 757 1304 152 56 106 chr11 2790 2876 -150780677 - AluJo SINE Alu -6 306 217 4277 71 5 23 chr11 2876 3440 -150780113 - MER41A LTR ERV1 0 554 1 1304 152 56 106 chr11 3440 3675 -150779878 - AluJo SINE Alu -95 217 1 3458 204 10 31 chr11 3675 4458 -150779095 - MER4-int LTR ERV1 -6770 767 1 1966 99 4 4 chr11 4476 4748 -150778805 + AluSx SINE Alu 1 272 -40 669 225 3 0 chr11 4863 5153 -150778400 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 735 238 4 0 chr11 5182 5886 -150777667 + (TCCA)n Simple_repeat Simple_repeat 1 707 0 287 289 20 130 chr11 7217 7463 -150776090 - L3 LINE CR1 -437 1140 922 189 0 0 0 chr11 14182 14203 -150769350 + (CAGA)n Simple_repeat Simple_repeat 1 21 0 293 275 0 14 chr11 15166 15235 -150768318 + MIR3 SINE MIR 104 171 -37 2298 86 3 3 chr11 19161 19464 -150764089 - AluSp SINE Alu -10 303 1 187 270 25 82 chr11 22918 23077 -150760476 - L2 LINE L2 -190 3082 2933 189 147 0 52 chr11 24421 24537 -150759016 + (CCTG)n Simple_repeat Simple_repeat 2 111 0 299 204 0 56 chr11 24547 24709 -150758844 + CT-rich Low_complexity Low_complexity 2 154 0 576 174 31 6 chr11 24866 25027 -150758526 + CT-rich Low_complexity Low_complexity 2 166 0 211 204 0 0 chr11 25419 25463 -150758090 + CT-rich Low_complexity Low_complexity 2 45 0 235 291 63 13 chr11 28243 28322 -150755231 + MIR SINE MIR 108 190 -72 196 305 52 31 chr11 28439 28572 -150754981 - MIR SINE MIR -52 156 51 269 356 6 23 chr11 29025 29199 -150754354 + CT-rich Low_complexity Low_complexity 1 171 0 204 97 0 0 chr11 31152 31183 -150752370 + (TG)n Simple_repeat Simple_repeat 1 31 0 188 163 0 20 chr11 33880 33929 -150749624 + CT-rich Low_complexity Low_complexity 3 50 0 300 111 0 0 chr11 34026 34071 -150749482 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 209 284 21 11 chr11 34326 34421 -150749132 + CT-rich Low_complexity Low_complexity 2 97 0 315 191 0 0 chr11 34421 34484 -150749069 + C-rich Low_complexity Low_complexity 1 63 0 220 323 32 0 chr11 35000 35093 -150748460 - MIR SINE MIR -74 134 39 276 217 300 17 chr11 36065 36185 -150747368 + L3 LINE CR1 1349 1502 -75 587 200 0 7 chr11 36306 36446 -150747107 + (TCCA)n Simple_repeat Simple_repeat 4 142 0 237 224 0 0 chr11 36582 36631 -150746922 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36639 36685 -150746868 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36704 36750 -150746803 + Alu SINE Alu 237 282 -20 263 184 0 0 chr11 36765 36814 -150746739 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36879 36925 -150746628 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36940 36986 -150746567 + Alu SINE Alu 237 282 -20 195 69 0 0 chr11 36993 37022 -150746531 + (CA)n Simple_repeat Simple_repeat 1 29 0 231 61 0 0 chr11 37052 37085 -150746468 + (CA)n Simple_repeat Simple_repeat 1 33 0 210 91 0 0 chr11 37119 37152 -150746401 + (CA)n Simple_repeat Simple_repeat 1 33 0 231 61 0 0 chr11 37182 37215 -150746338 + (CA)n Simple_repeat Simple_repeat 1 33 0 252 204 0 0 chr11 37253 37302 -150746251 + AluJ/monomer SINE Alu 237 285 -17 249 57 0 0 chr11 37384 37419 -150746134 + (CA)n Simple_repeat Simple_repeat 1 35 0 253 83 0 0 chr11 37419 37455 -150746098 + Alu SINE Alu 250 285 -17 339 111 25 12 chr11 37501 37582 -150745971 + (CA)n Simple_repeat Simple_repeat 2 83 0 235 132 0 0 chr11 37595 37633 -150745920 + Alu SINE Alu 247 284 -18 204 40 0 0 chr11 37633 37658 -150745895 + (CA)n Simple_repeat Simple_repeat 2 26 0 258 32 0 0 chr11 37688 37719 -150745834 + (CA)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr11 37801 37831 -150745722 + (CA)n Simple_repeat Simple_repeat 1 30 0 1907 162 10 36 chr11 38177 38528 -150745025 - MLT1B LTR MaLR -5 385 43 2175 86 17 0 chr11 38528 38818 -150744735 - AluSx SINE Alu -17 295 1 1907 162 10 36 chr11 38818 38854 -150744699 - MLT1B LTR MaLR -347 43 8 999 135 6 6 chr11 38922 39078 -150744475 - AluJb SINE Alu -156 156 1 341 318 26 0 chr11 39703 39854 -150743699 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 265 229 8 8 chr11 39856 39978 -150743575 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 377 328 8 0 chr11 40140 40262 -150743291 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 731 162 12 12 chr11 40315 40488 -150743065 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 266 319 45 70 chr11 42552 42675 -150740878 + MIR SINE MIR 89 209 -53 2090 117 0 3 chr11 42675 42973 -150740580 + AluSx SINE Alu 1 297 -15 266 319 45 70 chr11 42973 43006 -150740547 + MIR SINE MIR 209 241 -21 195 250 54 18 chr11 43020 43076 -150740477 - MIR SINE MIR -58 150 93 322 172 17 103 chr11 49297 49372 -150734181 - MER45A DNA AcHobo -1405 176 113 2296 100 0 0 chr11 49372 49681 -150733872 + AluSx SINE Alu 1 309 -3 322 172 17 103 chr11 49681 49721 -150733832 - MER45A DNA AcHobo -1468 113 71 833 228 103 70 chr11 49864 50052 -150733501 + MLT1C LTR MaLR 9 189 -278 2294 88 0 25 chr11 50052 50369 -150733184 + AluY SINE Alu 1 309 -2 833 228 103 70 chr11 50369 50539 -150733014 + MLT1C LTR MaLR 189 379 -88 234 0 0 0 chr11 51152 51178 -150732375 + (TG)n Simple_repeat Simple_repeat 1 26 0 1720 165 0 14 chr11 51190 51475 -150732078 - AluJb SINE Alu -29 283 3 816 157 8 15 chr11 52554 52688 -150730865 - FLAM_C SINE Alu 0 133 1 1501 145 47 63 chr11 52697 53014 -150730539 - AluJb SINE Alu 0 312 1 351 327 60 36 chr11 53830 54215 -150729338 - L2 LINE L2 -66 3206 2813 246 62 0 0 chr11 54870 54902 -150728651 + (CCCTAA)n Simple_repeat Simple_repeat 1 32 0 300 296 84 56 chr11 55144 55286 -150728267 - L1MC4 LINE L1 -10 8032 7887 392 354 86 48 chr11 55295 55852 -150727701 - L1M4c LINE L1 -4896 1488 911 463 266 36 0 chr11 55996 56186 -150727367 - L1MC4 LINE L1 -993 6900 6616 215 175 35 18 chr11 59756 59813 -150723740 + (CCCG)n Simple_repeat Simple_repeat 3 60 0 280 231 66 0 chr11 64341 64432 -150719121 + (CAGCC)n Simple_repeat Simple_repeat 4 100 0 486 49 0 0 chr11 66870 66931 -150716622 + (CA)n Simple_repeat Simple_repeat 2 62 0 811 190 74 0 chr11 67240 67403 -150716150 + MER45A DNA AcHobo 1 175 -3 211 189 0 0 chr11 67769 67806 -150715747 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 262 260 10 30 chr11 76287 76387 -150707166 + (CACG)n Simple_repeat Simple_repeat 2 99 0 690 130 10 0 chr11 78574 78674 -150704879 - AluY SINE Alu -108 203 103 227 183 14 0 chr11 78919 78990 -150704563 - L1MDb LINE L1 -5202 1207 1136 813 193 175 9 chr11 79111 79334 -150704219 - Tigger7 DNA MER2_type -16 2571 2312 564 211 0 68 chr11 79341 79410 -150704143 - Tigger7 DNA MER2_type -534 171 115 2018 121 7 0 chr11 79410 79734 -150703819 + AluSx SINE Alu 1 326 0 564 211 0 68 chr11 79734 79810 -150703743 - Tigger7 DNA MER2_type -590 115 35 1399 210 20 37 chr11 79835 80092 -150703461 - MLT1B LTR MaLR -48 342 91 1485 112 0 31 chr11 80092 80316 -150703237 + AluSg/x SINE Alu 86 302 -10 1399 210 20 37 chr11 80316 80406 -150703147 - MLT1B LTR MaLR -299 91 1 2067 127 0 0 chr11 81989 82288 -150701265 + AluSx SINE Alu 1 299 -13 2176 125 0 3 chr11 82530 82834 -150700719 + AluSx SINE Alu 1 303 -9 1132 190 73 6 chr11 82849 83137 -150700416 + L1MB3 LINE L1 5875 6182 -1 768 293 6 45 chr11 83152 83486 -150700067 + L1MC4 LINE L1 6703 7023 -1019 1389 218 199 31 chr11 83536 84049 -150699504 + MLT1E1 LTR MaLR 56 654 0 384 185 152 26 chr11 84114 84265 -150699288 + L1MC5 LINE L1 7036 7205 -756 566 188 228 0 chr11 84266 84415 -150699138 + MER20 DNA MER1_type 1 183 -36 1869 213 158 4 chr11 84421 84928 -150698625 + MLT1E LTR MaLR 7 591 -2 889 257 139 46 chr11 85055 85581 -150697972 - MLT1E2 LTR MaLR 0 626 52 594 238 0 21 chr11 85642 85785 -150697768 - MER58A DNA MER1_type 0 140 1 400 314 78 26 chr11 86053 86359 -150697194 + L1MC5 LINE L1 7400 7721 -240 215 200 0 0 chr11 87098 87133 -150696420 + polypurine Low_complexity Low_complexity 1 35 0 1122 166 0 3 chr11 87147 87458 -150696095 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 1629 137 4 15 chr11 87559 87830 -150695723 - AluJo SINE Alu -40 272 5 1417 258 95 54 chr11 87835 88426 -150695127 - L1ME1 LINE L1 -223 6012 5337 2275 97 0 0 chr11 88426 88724 -150694829 - AluSq SINE Alu -8 305 8 1417 258 95 54 chr11 88724 89149 -150694404 - L1ME1 LINE L1 -898 5337 4931 899 183 0 12 chr11 89149 89313 -150694240 + AluJb SINE Alu 128 289 -23 1557 276 72 30 chr11 89327 90178 -150693375 - L1ME1 LINE L1 -1306 4909 3978 2089 193 33 0 chr11 90179 90568 -150692985 - MER57A LTR ERV1 0 403 2 940 198 45 0 chr11 90577 90779 -150692774 - MER57A-int LTR ERV1 -47 7490 7280 588 145 23 30 chr11 90779 90910 -150692643 - LTR54B LTR ERV1 -366 132 3 2130 205 13 26 chr11 90910 91378 -150692175 - MER57A-int LTR ERV1 -391 7146 6685 1353 111 5 0 chr11 91761 91950 -150691603 + AluY SINE Alu 103 292 -19 364 320 31 2 chr11 91994 92179 -150691374 + L1M4 LINE L1 5175 5363 -783 2139 129 3 0 chr11 92397 92706 -150690847 + AluSx SINE Alu 1 310 -2 1710 154 48 3 chr11 92931 93223 -150690330 + AluJo SINE Alu 1 305 -7 2188 100 3 3 chr11 93537 93836 -150689717 - AluSx SINE Alu -13 299 1 1937 134 0 49 chr11 93836 94164 -150689389 - AluJb SINE Alu 0 312 1 943 219 24 39 chr11 94166 94234 -150689319 - L1ME1 LINE L1 -4038 2358 2291 1560 166 7 36 chr11 94234 94536 -150689017 - AluJo SINE Alu -19 293 1 943 219 24 39 chr11 94536 94805 -150688748 - L1ME1 LINE L1 -4105 2291 2026 1677 263 69 73 chr11 94815 95658 -150687895 - L1ME1 LINE L1 -5523 873 35 2070 111 0 7 chr11 95826 96124 -150687429 - AluSx SINE Alu -16 296 1 350 276 31 34 chr11 96387 96546 -150687007 + MIR SINE MIR 31 187 -68 450 415 36 36 chr11 96741 97131 -150686422 - L1M4 LINE L1 -1525 4621 4232 304 298 31 19 chr11 97141 97302 -150686251 - L1M4 LINE L1 -1948 4198 4036 729 105 202 0 chr11 97513 97627 -150685926 + AluJb SINE Alu 1 137 -175 1450 158 90 23 chr11 97629 97740 -150685813 + AluJb SINE Alu 3 105 -207 2348 77 7 0 chr11 97740 98039 -150685514 + AluSc SINE Alu 1 301 -8 1450 158 90 23 chr11 98039 98219 -150685334 + AluJb SINE Alu 105 312 0 1594 74 5 0 chr11 98667 98870 -150684683 - AluSg/x SINE Alu -20 292 89 2042 62 13 65 chr11 98977 99286 -150684267 - AluY SINE Alu -18 293 1 424 337 58 0 chr11 99286 99458 -150684095 - L1M4 LINE L1 -3109 3037 2856 201 261 25 25 chr11 100062 100181 -150683372 + (TG)n Simple_repeat Simple_repeat 2 120 0 221 240 31 31 chr11 100215 100344 -150683209 + (TG)n Simple_repeat Simple_repeat 2 130 0 243 0 0 0 chr11 100423 100450 -150683103 + (TG)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr11 100694 100721 -150682832 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 294 20 20 chr11 100753 100906 -150682647 + (TG)n Simple_repeat Simple_repeat 2 154 0 243 0 0 0 chr11 100980 101007 -150682546 + (TG)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr11 101228 101255 -150682298 + (TG)n Simple_repeat Simple_repeat 2 28 0 371 193 48 24 chr11 101366 101532 -150682021 + (TG)n Simple_repeat Simple_repeat 1 170 0 369 182 18 18 chr11 107806 107916 -150675637 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 616 242 4 4 chr11 107955 108192 -150675361 + (TGGG)n Simple_repeat Simple_repeat 1 237 0 735 192 0 0 chr11 108193 108370 -150675183 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 205 171 0 0 chr11 108393 108428 -150675125 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 327 330 70 70 chr11 109228 109573 -150673980 + L1ME4a LINE L1 5016 5360 -786 1211 288 76 43 chr11 109625 110306 -150673247 + L1ME4a LINE L1 5418 6121 0 205 156 47 47 chr11 116924 117061 -150666492 + (CAGAGA)n Simple_repeat Simple_repeat 1 137 0 207 100 0 0 chr11 118097 118127 -150665426 + (GA)n Simple_repeat Simple_repeat 2 31 0 207 100 0 0 chr11 118637 118667 -150664886 + (GA)n Simple_repeat Simple_repeat 2 31 0 191 133 22 0 chr11 118823 118868 -150664685 + GA-rich Low_complexity Low_complexity 2 47 0 316 265 31 20 chr11 119073 119171 -150664382 - L3 LINE CR1 -12 1565 1467 766 224 12 9 chr11 125700 126022 -150657531 + (TCCA)n Simple_repeat Simple_repeat 1 323 0 332 263 0 0 chr11 126052 126189 -150657364 + (TCCA)n Simple_repeat Simple_repeat 2 138 0 315 156 21 104 chr11 126535 126620 -150656933 + FRAM SINE Alu 72 150 -152 384 22 0 0 chr11 126620 126665 -150656888 + (CA)n Simple_repeat Simple_repeat 2 46 0 189 154 0 0 chr11 127268 127307 -150656246 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 180 125 0 0 chr11 127435 127467 -150656086 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 180 77 0 0 chr11 127486 127512 -150656041 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2247 242 23 0 chr11 128003 128578 -150654975 + L1MC1 LINE L1 5498 6085 -248 794 187 74 20 chr11 128577 128780 -150654773 + L1MC2 LINE L1 6120 6333 -11 * 1857 146 14 0 chr11 128796 129110 -150654443 + AluSx SINE Alu 1 318 0 2255 100 0 19 chr11 129111 129422 -150654131 + AluSc SINE Alu 1 305 -4 302 100 67 0 chr11 129426 129486 -150654067 + MER53 DNA DNA 125 188 -1 219 254 16 70 chr11 131060 131245 -150652308 + G-rich Low_complexity Low_complexity 4 178 0 380 228 31 19 chr11 131275 131491 -150652062 + (CGGGG)n Simple_repeat Simple_repeat 1 218 0 23 68 0 0 chr11 131959 132003 -150651550 + GC_rich Low_complexity Low_complexity 1 44 0 321 250 104 0 chr11 136380 136476 -150647077 - MIR SINE MIR -134 128 23 1257 280 104 10 chr11 145349 145838 -150637715 - L1MB7 LINE L1 0 6184 5650 1970 125 54 0 chr11 150244 150540 -150633013 + AluSx SINE Alu 1 312 0 376 219 10 0 chr11 161647 161743 -150621810 + L1MB3 LINE L1 6029 6125 -58 2183 103 7 0 chr11 162510 162812 -150620741 + AluSp SINE Alu 3 306 -7 390 292 28 35 chr11 169405 169549 -150614004 + MIR SINE MIR 2 144 -118 1841 168 27 0 chr11 170085 170382 -150613171 - AluJo SINE Alu -7 305 1 264 77 0 0 chr11 171260 171299 -150612254 + (GGCTG)n Simple_repeat Simple_repeat 1 39 0 * 891 129 0 0 chr11 171298 171476 -150612077 + (CAGGG)n Simple_repeat Simple_repeat 3 180 0 453 147 0 0 chr11 171476 171571 -150611982 + (GGCTG)n Simple_repeat Simple_repeat 4 98 0 211 308 15 0 chr11 175372 175437 -150608116 + G-rich Low_complexity Low_complexity 1 66 0 387 0 0 0 chr11 175586 175629 -150607924 + (CA)n Simple_repeat Simple_repeat 1 43 0 3699 140 42 74 chr11 187516 187551 -150596002 + LTR8 LTR ERV1 1 36 -655 2207 119 0 0 chr11 187551 187861 -150595692 + AluSq SINE Alu 1 310 -3 3699 140 42 74 chr11 187861 188537 -150595016 + LTR8 LTR ERV1 36 689 -2 2302 73 20 0 chr11 188788 189090 -150594463 - AluY SINE Alu -2 309 2 728 276 107 48 chr11 189940 190360 -150593193 - MLT1C LTR MaLR -6 461 17 1099 210 20 0 chr11 190688 190940 -150592613 + MLT1B LTR MaLR 128 384 -6 789 297 50 28 chr11 191178 191575 -150591978 - MLT1C LTR MaLR -9 458 53 555 321 29 7 chr11 191689 191963 -150591590 + MLT2F LTR ERVL 380 659 -4 331 312 70 28 chr11 192149 192643 -150590910 + MLT1H1 LTR MaLR 28 540 -15 180 0 0 0 chr11 193606 193626 -150589927 + (TC)n Simple_repeat Simple_repeat 1 20 0 221 234 0 0 chr11 194302 194349 -150589204 + L2 LINE L2 3266 3312 -1 233 202 40 40 chr11 195589 195688 -150587865 + MLT1J2 LTR MaLR 264 362 -88 944 242 60 4 chr11 197115 197396 -150586157 + MLT1B LTR MaLR 1 297 -93 396 40 0 0 chr11 198820 198870 -150584683 + (TCC)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr11 198960 198981 -150584572 + AT_rich Low_complexity Low_complexity 1 21 0 2186 103 0 13 chr11 204150 204460 -150579093 + AluSp SINE Alu 1 306 -7 553 235 92 31 chr11 204482 204678 -150578875 + MER63A DNA MER1_type 1 208 -2 189 167 0 0 chr11 205401 205455 -150578098 + (GTGTG)n Simple_repeat Simple_repeat 5 58 0 471 285 26 47 chr11 206737 206930 -150576623 - MER53 DNA DNA 0 189 1 289 225 8 4 chr11 207733 207980 -150575573 + (TG)n Simple_repeat Simple_repeat 1 248 0 246 240 0 0 chr11 210578 210628 -150572925 - MIR3 SINE MIR -50 158 109 2569 42 0 3 chr11 224821 225131 -150558422 + AluY SINE Alu 1 309 -2 195 300 0 43 chr11 225605 225675 -150557878 + L2 LINE L2 3227 3293 -20 365 328 87 45 chr11 226208 226543 -150557010 - L1MEd LINE L1 -5013 1106 758 309 385 70 45 chr11 227165 227477 -150556076 - L1MEd LINE L1 -4959 1160 841 1652 145 106 0 chr11 227497 227779 -150555774 - AluSx SINE Alu 0 312 1 1864 128 0 4 chr11 279176 279449 -150504104 - AluSx SINE Alu -29 283 12 757 124 0 83 chr11 279478 279623 -150503930 - FLAM_C SINE Alu 0 133 1 913 280 94 9 chr11 279630 280052 -150503501 - L1M4 LINE L1 -864 5282 4785 711 250 30 0 chr11 280052 280220 -150503333 - MER20 DNA MER1_type 0 219 47 490 207 0 0 chr11 280236 280323 -150503230 - MLT1B LTR MaLR -15 375 289 874 217 0 17 chr11 280323 280503 -150503050 - AluSx SINE Alu -133 179 3 1430 245 39 55 chr11 280587 281207 -150502346 - L1M4 LINE L1 -2508 3638 3029 601 225 0 0 chr11 281214 281334 -150502219 - AluJb SINE Alu -8 304 185 2047 104 24 0 chr11 281875 282163 -150501390 - AluSx SINE Alu -16 296 2 257 292 44 9 chr11 282784 282897 -150500656 - L1M4 LINE L1 -2587 3559 3443 944 121 0 7 chr11 282944 283084 -150500469 - AluSg/x SINE Alu -10 300 162 414 84 0 92 chr11 283288 283430 -150500123 + (TCTCC)n Simple_repeat Simple_repeat 5 133 0 1801 160 43 62 chr11 283787 284205 -150499348 - MLT2D LTR ERVL 0 414 5 200 230 150 40 chr11 284617 284717 -150498836 + L2 LINE L2 3161 3271 -1 454 117 0 0 chr11 285633 285693 -150497860 + AluS SINE Alu 232 291 -19 949 208 0 0 chr11 285711 285894 -150497659 - AluJb SINE Alu -5 307 125 1750 114 4 4 chr11 285958 286222 -150497331 - AluSx SINE Alu -48 264 1 227 303 101 8 chr11 286268 286387 -150497166 - L1M4 LINE L1 -3352 2794 2665 2001 107 0 14 chr11 287730 288020 -150495533 + AluSx SINE Alu 1 286 -26 2095 246 127 25 chr11 288054 288746 -150494807 - L1ME1 LINE L1 -54 6181 5412 315 0 0 0 chr11 288746 288781 -150494772 + (TA)n Simple_repeat Simple_repeat 1 35 0 2095 246 127 25 chr11 288781 288807 -150494746 - L1ME1 LINE L1 -823 5412 5390 1955 120 3 42 chr11 288807 289116 -150494437 - AluSx SINE Alu -15 297 1 3819 136 3 8 chr11 289132 289742 -150493811 + L1PB3 LINE L1 5546 6152 -2 31 26 0 0 chr11 289742 289780 -150493773 + AT_rich Low_complexity Low_complexity 1 38 0 1302 248 3 7 chr11 289827 290130 -150493423 - AluSx SINE Alu 0 302 1 33 43 0 0 chr11 290133 290180 -150493373 + AT_rich Low_complexity Low_complexity 1 47 0 1376 218 12 65 chr11 290308 290614 -150492939 - L1ME1 LINE L1 -2008 4207 3927 2341 65 0 34 chr11 290614 290936 -150492617 - AluY SINE Alu 0 311 1 1376 218 12 65 chr11 290936 291041 -150492512 - L1ME1 LINE L1 -2288 3927 3818 790 267 40 30 chr11 291043 291339 -150492214 - L1M4 LINE L1 -761 5385 5087 907 204 0 0 chr11 291344 291511 -150492042 + FRAM SINE Alu 1 163 -13 1473 217 72 21 chr11 291512 291940 -150491613 - L1M4 LINE L1 -1059 5087 4638 722 205 8 0 chr11 291942 292064 -150491489 + FLAM_C SINE Alu 2 124 -19 910 257 30 10 chr11 292094 292390 -150491163 - L1M4 LINE L1 -1503 4643 4342 2249 109 0 0 chr11 292401 292703 -150490850 - AluSx SINE Alu -10 302 1 1729 219 50 48 chr11 292705 293201 -150490352 - L1ME1 LINE L1 -3999 2397 1898 2091 117 0 0 chr11 293201 293499 -150490054 + AluSx SINE Alu 1 298 -14 1729 219 50 48 chr11 293499 293563 -150489990 - L1ME1 LINE L1 -4498 1898 1836 195 42 0 0 chr11 293970 293994 -150489559 + (A)n Simple_repeat Simple_repeat 1 24 0 1251 246 60 67 chr11 293996 294643 -150488910 - L1ME1 LINE L1 -4599 1797 1155 2345 88 3 0 chr11 294644 294952 -150488601 - AluY SINE Alu 0 311 3 814 105 0 0 chr11 294952 295057 -150488496 - AluSg/x SINE Alu -14 296 192 334 89 13 0 chr11 295158 295209 -150488344 - Alu SINE Alu -262 41 1 2173 221 58 81 chr11 295233 296014 -150487539 - L1ME1 LINE L1 -5300 1096 334 1599 105 42 0 chr11 296019 296258 -150487295 - AluSx SINE Alu -12 300 52 1937 78 0 0 chr11 296451 296706 -150486847 - AluY SINE Alu 0 311 57 183 42 0 0 chr11 296981 297005 -150486548 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1887 98 49 0 chr11 297005 297271 -150486282 - AluSx SINE Alu -33 279 1 745 301 105 18 chr11 297952 298145 -150485408 - L2 LINE L2 -756 2558 2383 2168 80 6 16 chr11 298145 298456 -150485097 - AluSx SINE Alu 0 312 5 745 301 105 18 chr11 298456 298654 -150484899 - L2 LINE L2 -931 2383 2133 312 263 50 0 chr11 298838 298937 -150484616 + MIR SINE MIR 2 105 -157 2141 106 0 13 chr11 298982 299283 -150484270 - AluSx SINE Alu -15 297 1 436 301 76 42 chr11 299356 299618 -150483935 + L1M4 LINE L1 5063 5333 -813 429 298 42 26 chr11 299751 300095 -150483458 - L1ME LINE L1 -716 5454 5106 383 250 27 27 chr11 300154 300302 -150483251 + L1ME3A LINE L1 6011 6158 -12 910 240 413 7 chr11 300740 301178 -150482375 + L1MC4 LINE L1 6469 7084 -958 989 216 90 50 chr11 301276 301424 -150482129 + L1MC4 LINE L1 7322 7463 -579 1454 200 104 35 chr11 301424 301769 -150481784 + MLT1A2 LTR MaLR 2 370 -4 989 216 90 50 chr11 301769 301898 -150481655 + L1MC4 LINE L1 7463 7610 -432 338 248 67 89 chr11 301916 302186 -150481367 - L1M4 LINE L1 -926 5154 4891 382 347 17 42 chr11 302616 302855 -150480698 - L1M4 LINE L1 -1194 4886 4654 1688 275 75 56 chr11 302856 303377 -150480176 - L1ME LINE L1 -2734 3346 2836 2366 47 0 14 chr11 303377 303674 -150479879 - AluY SINE Alu -17 294 2 1688 275 75 56 chr11 303674 303697 -150479856 - L1ME LINE L1 -3244 2836 2815 1937 108 34 10 chr11 303697 303993 -150479560 - AluSq SINE Alu -10 303 1 1688 275 75 56 chr11 303993 304595 -150478958 - L1ME LINE L1 -3265 2815 2226 1519 98 0 0 chr11 304595 304798 -150478755 - AluSg/x SINE Alu -24 286 84 1744 151 0 30 chr11 304800 305104 -150478449 - AluJo SINE Alu -17 295 1 1688 275 75 56 chr11 305104 305300 -150478253 - L1ME LINE L1 -3854 2226 2035 1888 119 7 4 chr11 305300 305598 -150477955 - AluSg SINE Alu 0 299 1 1688 275 75 56 chr11 305598 306195 -150477358 - L1ME LINE L1 -4045 2035 1334 233 278 9 56 chr11 306424 306532 -150477021 - MER103 DNA DNA -45 121 19 439 297 91 61 chr11 306666 307072 -150476481 - L1ME LINE L1 -5162 908 551 363 36 0 18 chr11 307437 307493 -150476060 - AluY SINE Alu 0 301 247 234 184 41 0 chr11 307471 307520 -150476033 - Alu SINE Alu -248 51 1 * 820 101 0 0 chr11 307546 307655 -150475898 + AluSq/x SINE Alu 3 111 -202 1823 64 4 0 chr11 307655 307889 -150475664 - AluY SINE Alu -76 235 1 1343 112 5 0 chr11 308360 308548 -150475005 + AluSx SINE Alu 1 189 -123 638 181 206 0 chr11 308649 308804 -150474749 - MER34 LTR ERV1 -316 226 40 1968 89 62 3 chr11 308815 309107 -150474446 - AluSc SINE Alu 0 309 1 510 240 177 40 chr11 309188 309663 -150473890 - L1M4 LINE L1 -2848 3298 2759 599 285 14 36 chr11 309664 309764 -150473789 - L1M4 LINE L1 -2479 3667 3566 2102 124 0 6 chr11 309764 310079 -150473474 - AluSq SINE Alu 0 313 1 599 285 14 36 chr11 310079 310199 -150473354 - L1M4 LINE L1 -2580 3566 3452 441 316 109 41 chr11 310496 310889 -150472664 - L1ME LINE L1 -5611 459 40 480 297 44 27 chr11 311025 311298 -150472255 + L1ME2 LINE L1 2719 3001 -3145 1670 226 30 6 chr11 311298 311634 -150471919 + MER2 DNA MER2_type 1 344 0 480 297 44 27 chr11 311634 311727 -150471826 + L1ME2 LINE L1 3001 3091 -3055 189 139 0 0 chr11 313175 313218 -150470335 + (T)n Simple_repeat Simple_repeat 1 43 0 2253 80 0 22 chr11 313609 313921 -150469632 - AluY SINE Alu -6 305 1 720 324 21 64 chr11 314098 314521 -150469032 + L1ME2 LINE L1 3056 3460 -2686 281 343 75 0 chr11 314648 314782 -150468771 + L1ME2 LINE L1 3620 3763 -2383 2045 53 4 15 chr11 315011 315277 -150468276 + L1PA4 LINE L1 5889 6151 -4 2208 101 7 7 chr11 315392 315700 -150467853 - AluSq SINE Alu -5 308 1 446 254 45 50 chr11 315701 315921 -150467632 - L1M4 LINE L1 -2059 4087 3869 730 223 52 24 chr11 316212 316423 -150467130 + L1ME2 LINE L1 4915 5131 -1015 2240 91 3 0 chr11 316428 316725 -150466828 + AluSx SINE Alu 1 298 -14 973 220 43 134 chr11 316730 316952 -150466601 + L1ME2 LINE L1 5604 5845 -321 1907 194 49 61 chr11 316952 317463 -150466090 + MLT1D LTR MaLR 1 505 0 973 220 43 134 chr11 317463 317838 -150465715 + L1ME2 LINE L1 5845 6139 -27 1028 208 81 0 chr11 317850 318071 -150465482 - Tigger3(Golem) DNA MER2_type 0 3038 2800 394 311 0 0 chr11 318084 318187 -150465366 - Tigger3(Golem) DNA MER2_type -2894 135 33 1850 167 0 16 chr11 318209 318526 -150465027 + AluJo SINE Alu 1 312 0 1897 160 82 3 chr11 319222 319578 -150463975 + MLT1B LTR MaLR 1 384 -6 1506 248 111 15 chr11 320715 321174 -150462379 - MLT1D LTR MaLR 0 505 3 279 226 0 59 chr11 323840 323942 -150459611 + L2 LINE L2 3139 3234 -38 189 237 68 0 chr11 324748 324807 -150458746 - MIR SINE MIR -92 170 108 299 247 67 11 chr11 324873 324962 -150458591 - MIR SINE MIR -92 170 77 207 272 19 76 chr11 326066 326224 -150457329 + (CACCC)n Simple_repeat Simple_repeat 1 149 0 222 287 52 9 chr11 326455 326570 -150456983 + (CAGCC)n Simple_repeat Simple_repeat 1 120 0 1656 241 56 9 chr11 326877 327326 -150456227 + MLT1D LTR MaLR 2 471 -34 321 68 0 0 chr11 328137 328181 -150455372 + (CA)n Simple_repeat Simple_repeat 2 45 0 4998 172 31 14 chr11 328183 328567 -150454986 - L1MC2 LINE L1 -114 6230 5854 1625 170 7 3 chr11 328567 328867 -150454686 - AluJb SINE Alu -11 301 1 4998 172 31 14 chr11 328867 329509 -150454044 - L1MC2 LINE L1 -490 5854 5188 1176 252 128 48 chr11 329779 330020 -150453533 + L2 LINE L2 1824 2044 -1270 2051 122 20 0 chr11 330020 330324 -150453229 - AluSx SINE Alu -2 310 1 1176 252 128 48 chr11 330324 330709 -150452844 + L2 LINE L2 2044 2500 -814 4779 92 22 15 chr11 330709 330869 -150452684 - LTR8 LTR ERV1 0 691 534 647 83 0 21 chr11 330869 331003 -150452550 - L1PA6 LINE L1 0 6154 6060 4779 92 22 15 chr11 331003 331527 -150452026 - LTR8 LTR ERV1 -157 534 2 269 246 14 0 chr11 331531 331600 -150451953 + L2 LINE L2 2497 2566 -748 2017 113 3 0 chr11 331740 332031 -150451522 + AluSq SINE Alu 2 293 -20 197 346 13 13 chr11 332235 332313 -150451240 + L2 LINE L2 3234 3311 -2 302 246 0 0 chr11 333157 333222 -150450331 - L2 LINE L2 -3 3310 3246 223 292 0 0 chr11 334117 334165 -150449388 + L2 LINE L2 3003 3050 -263 844 87 46 9 chr11 335130 335350 -150448203 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 922 103 50 0 chr11 335368 335826 -150447727 + (TCCA)n Simple_repeat Simple_repeat 1 480 0 202 231 0 0 chr11 336298 336337 -150447216 + T-rich Low_complexity Low_complexity 2 40 0 1274 227 94 6 chr11 336592 336922 -150446631 - MLT1A1 LTR MaLR -6 359 1 1471 286 91 20 chr11 337354 337517 -150446036 + L2 LINE L2 2036 2186 -1128 2013 140 81 69 chr11 337517 337939 -150445614 - MSTA LTR MaLR -1 427 1 1471 286 91 20 chr11 337939 338352 -150445201 + L2 LINE L2 2186 2667 -647 2311 107 0 0 chr11 338352 338660 -150444893 - AluSg SINE Alu -2 308 1 1471 286 91 20 chr11 338660 338739 -150444814 + L2 LINE L2 2667 2739 -575 598 264 78 103 chr11 338784 339281 -150444272 + L2 LINE L2 2827 3311 -2 503 274 73 6 chr11 339559 339596 -150443957 + L2 LINE L2 2422 2455 -859 2315 72 23 7 chr11 339596 339901 -150443652 - AluSg SINE Alu 0 310 1 503 274 73 6 chr11 339901 340027 -150443526 + L2 LINE L2 2455 2596 -718 425 215 0 0 chr11 340246 340325 -150443228 + Tigger5 DNA MER2_type 1 79 -2244 335 274 0 0 chr11 340380 340453 -150443100 + Tigger5 DNA MER2_type 2248 2320 -3 735 291 34 17 chr11 341057 341291 -150442262 - MIR SINE MIR -24 238 1 397 333 60 34 chr11 341356 341623 -150441930 + L1M4 LINE L1 4296 4569 -1577 658 107 76 0 chr11 341822 342158 -150441395 + (CACTC)n Simple_repeat Simple_repeat 1 361 0 254 323 10 0 chr11 342244 342343 -150441210 + (TCCA)n Simple_repeat Simple_repeat 1 100 0 655 271 60 35 chr11 342872 343156 -150440397 - L1MC4 LINE L1 -1 8041 7751 274 331 57 32 chr11 344244 344401 -150439152 + MIR SINE MIR 80 240 -22 218 273 0 0 chr11 346216 346271 -150437282 + L2 LINE L2 3259 3313 0 980 162 0 0 chr11 346442 346596 -150436957 + AluJb SINE Alu 147 300 -12 513 188 12 6 chr11 346642 346807 -150436746 + (TG)n Simple_repeat Simple_repeat 1 166 0 242 221 0 44 chr11 346811 346879 -150436674 + (TATG)n Simple_repeat Simple_repeat 4 68 0 346 240 17 17 chr11 346902 347081 -150436472 + (TG)n Simple_repeat Simple_repeat 2 180 0 461 225 17 6 chr11 347121 347299 -150436254 + (TG)n Simple_repeat Simple_repeat 1 180 0 562 183 25 18 chr11 347317 347760 -150435793 + (TG)n Simple_repeat Simple_repeat 1 446 0 288 279 66 20 chr11 348316 348513 -150435040 + L1MEc LINE L1 1277 1482 -4914 728 142 15 0 chr11 348755 348889 -150434664 - MER4D LTR ERV1 -13 890 755 773 197 0 15 chr11 348894 349031 -150434522 - AluJo SINE Alu -177 135 1 949 146 32 5 chr11 349031 349216 -150434337 - MER4D LTR ERV1 -133 739 550 989 51 0 0 chr11 349223 349340 -150434213 + AluSx SINE Alu 16 132 -180 383 277 0 43 chr11 349351 349445 -150434108 + L1MC4 LINE L1 6614 6703 -1339 * 386 240 0 62 chr11 349385 349481 -150434072 - L1MC4 LINE L1 -1339 6703 6614 * 423 251 4 24 chr11 349460 349586 -150433967 - L1MCa LINE L1 -1339 6983 1995 239 255 0 0 chr11 349590 349637 -150433916 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 1394 93 0 0 chr11 349637 349819 -150433734 + AluSx SINE Alu 123 304 -6 920 170 6 11 chr11 349846 350028 -150433525 - MER4D LTR ERV1 -463 409 229 428 221 71 0 chr11 350073 350213 -150433340 - MER4D LTR ERV1 -753 150 1 21 0 0 0 chr11 350495 350516 -150433037 + GC_rich Low_complexity Low_complexity 1 21 0 212 182 0 18 chr11 350536 350591 -150432962 + (CCCCG)n Simple_repeat Simple_repeat 5 58 0 312 296 29 48 chr11 352835 353041 -150430512 - L2 LINE L2 -822 2492 2291 301 189 0 95 chr11 359801 359970 -150423583 + CT-rich Low_complexity Low_complexity 3 155 0 312 163 0 56 chr11 359997 360157 -150423396 + (TCCA)n Simple_repeat Simple_repeat 2 152 0 234 0 0 0 chr11 360580 360606 -150422947 + (CTGGGG)n Simple_repeat Simple_repeat 3 28 0 22 70 0 0 chr11 365378 365421 -150418132 + GC_rich Low_complexity Low_complexity 1 43 0 399 333 6 6 chr11 368073 368238 -150415315 + (TG)n Simple_repeat Simple_repeat 2 166 0 276 275 18 0 chr11 368257 368428 -150415125 + (TG)n Simple_repeat Simple_repeat 1 174 0 374 326 17 11 chr11 368509 368687 -150414866 + (TG)n Simple_repeat Simple_repeat 2 180 0 268 278 17 6 chr11 368719 369084 -150414469 + (TG)n Simple_repeat Simple_repeat 1 369 0 224 280 222 0 chr11 369687 369777 -150413776 + MIR SINE MIR 29 137 -71 183 129 0 0 chr11 369888 369919 -150413634 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 692 146 0 0 chr11 370609 370719 -150412834 + AluSg/x SINE Alu 200 309 -1 334 162 34 179 chr11 370719 370836 -150412717 + L1MD1 LINE L1 3185 3284 -2862 803 75 37 0 chr11 370845 370952 -150412601 - AluSq/x SINE Alu -201 111 1 1055 269 0 7 chr11 370954 371236 -150412317 + L1MC1 LINE L1 6039 6318 -15 1159 247 36 50 chr11 371257 371531 -150412022 + L1MD1 LINE L1 4397 4662 -1484 4829 35 0 9 chr11 371531 372102 -150411451 + L1PA5 LINE L1 5589 6154 0 1159 247 36 50 chr11 372102 372329 -150411224 + L1MD1 LINE L1 4662 4891 -1255 764 287 81 12 chr11 372335 372656 -150410897 - MLT1A1 LTR MaLR -17 348 6 515 246 16 26 chr11 372662 372853 -150410700 + L1MD1 LINE L1 4889 5077 -1069 778 227 68 0 chr11 373203 373410 -150410143 + L1M4b LINE L1 94 314 -6545 1557 197 34 151 chr11 373410 374081 -150409472 - LTR8A LTR ERV1 0 727 135 3059 188 85 26 chr11 374087 374955 -150408598 + LTR28 LTR ERV1 1 1020 0 392 232 0 42 chr11 374955 375049 -150408504 - LTR8 LTR ERV1 -572 119 30 2250 265 53 19 chr11 375063 375817 -150407736 + L1M4b LINE L1 311 1090 -5769 1164 220 39 16 chr11 375928 376237 -150407316 + L1MD1 LINE L1 5672 5987 -255 942 189 31 15 chr11 376244 376440 -150407113 + L1MD1 LINE L1 6044 6242 0 1309 303 69 9 chr11 376446 377023 -150406530 + L1MEc LINE L1 31 642 -5754 1183 22 0 0 chr11 377079 377213 -150406340 + AluY SINE Alu 1 134 -177 2494 58 0 0 chr11 377213 377521 -150406032 + AluY SINE Alu 1 308 -3 1082 247 164 0 chr11 377524 377897 -150405656 + L1MEc LINE L1 2673 3106 -3109 1017 199 11 5 chr11 377904 378090 -150405463 + AluJo SINE Alu 1 187 -125 973 305 74 41 chr11 378250 378316 -150405237 - L1MCc LINE L1 -4889 1534 1472 2216 117 0 0 chr11 378316 378624 -150404929 - AluSg SINE Alu -2 308 1 973 305 74 41 chr11 378624 379001 -150404552 - L1MCc LINE L1 -4951 1472 1067 2133 113 0 7 chr11 379001 379302 -150404251 - AluSg SINE Alu -11 299 1 973 305 74 41 chr11 379302 379398 -150404155 - L1MCc LINE L1 -5356 1067 976 273 214 0 18 chr11 379399 379455 -150404098 - L2 LINE L2 -1 3312 3258 21 0 0 0 chr11 379911 379932 -150403621 + AT_rich Low_complexity Low_complexity 1 21 0 2055 135 0 3 chr11 379945 380248 -150403305 + AluSq SINE Alu 1 302 -11 251 282 96 5 chr11 380261 380449 -150403104 + L1M4 LINE L1 4490 4694 -1452 314 340 105 0 chr11 380466 380628 -150402925 + L1M4 LINE L1 4640 4818 -1328 403 356 104 13 chr11 380913 381143 -150402410 + L1M4 LINE L1 5091 5341 -805 287 96 0 58 chr11 381503 381555 -150401998 - AluSp SINE Alu -134 169 121 845 145 8 0 chr11 381579 381703 -150401850 - AluSq/x SINE Alu -187 125 1 340 336 109 51 chr11 381823 381840 -150401713 - L1M4 LINE L1 -1949 4197 4182 2127 129 3 0 chr11 381840 382150 -150401403 - AluSx SINE Alu -1 311 1 340 336 109 51 chr11 382150 382444 -150401109 - L1M4 LINE L1 -1964 4182 3868 254 306 19 28 chr11 384223 384331 -150399222 - LTR16C LTR ERVL 0 491 385 510 226 30 0 chr11 384696 384829 -150398724 + GA-rich Low_complexity Low_complexity 2 138 0 504 168 0 0 chr11 384831 384932 -150398621 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 1202 183 9 5 chr11 384944 385168 -150398385 - LTR55 LTR ERV -322 226 2 253 250 37 56 chr11 386989 387097 -150396456 + MLT1A1 LTR MaLR 51 156 -209 547 281 0 0 chr11 387109 387244 -150396309 - MLT-int LTR MaLR -1315 420 286 778 100 9 0 chr11 387245 387355 -150396198 + AluJb SINE Alu 1 111 -201 982 163 6 0 chr11 387440 387600 -150395953 + AluJb SINE Alu 135 295 -17 1030 202 59 29 chr11 387600 387872 -150395681 - MLT-int LTR MaLR -1440 295 16 617 234 24 0 chr11 387929 388096 -150395457 + MLT1A1 LTR MaLR 186 356 -9 1157 206 45 86 chr11 388611 388970 -150394583 + MLT2D LTR ERVL 21 364 -50 322 358 86 55 chr11 388999 389256 -150394297 - L1MC4 LINE L1 -1339 6703 6439 * 327 300 25 69 chr11 389099 389259 -150394294 + L1MCa LINE L1 1915 2067 -4359 25 23 0 23 chr11 389264 389283 -150394270 + AT_rich Low_complexity Low_complexity 1 19 -23 2091 117 3 0 chr11 389283 389573 -150393980 - AluSx SINE Alu -21 291 1 25 23 0 23 chr11 389573 389596 -150393957 + AT_rich Low_complexity Low_complexity 19 42 0 2225 56 40 10 chr11 391048 391403 -150392150 - AluY SINE Alu 0 364 1 207 0 0 0 chr11 391588 391611 -150391942 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 373 187 107 0 chr11 391751 391901 -150391652 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 290 133 107 0 chr11 391913 392063 -150391490 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 229 144 106 0 chr11 392111 392243 -150391310 + (CACAC)n Simple_repeat Simple_repeat 5 150 0 247 151 107 0 chr11 392255 392414 -150391139 + (CACAC)n Simple_repeat Simple_repeat 5 180 0 338 186 16 81 chr11 392442 392566 -150390987 + MLT2D LTR ERVL 293 408 -6 479 143 0 20 chr11 393640 393738 -150389815 + LTR52 LTR ERVL 1 96 -325 381 248 48 0 chr11 393864 393989 -150389564 + LTR52 LTR ERVL 288 418 -3 2124 117 0 0 chr11 393997 394325 -150389228 - AluSx SINE Alu 0 312 1 21 57 0 0 chr11 396074 396109 -150387444 + GC_rich Low_complexity Low_complexity 1 35 0 572 167 0 16 chr11 398325 398451 -150385102 + CT-rich Low_complexity Low_complexity 4 127 0 1335 293 47 11 chr11 398469 398911 -150384642 - L1MB3 LINE L1 -28 6155 5688 1474 221 168 20 chr11 398911 399309 -150384244 - MSTB2 LTR MaLR 0 457 1 1335 293 47 11 chr11 399309 399415 -150384138 - L1MB3 LINE L1 -495 5688 5587 295 329 16 36 chr11 399448 399700 -150383853 + MLT1J LTR MaLR 232 478 -33 181 291 87 19 chr11 402886 402989 -150380564 + L2 LINE L2 3161 3270 -2 26 0 0 0 chr11 404484 404510 -150379043 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 404670 404692 -150378861 + GC_rich Low_complexity Low_complexity 1 22 0 256 348 39 0 chr11 405716 405855 -150377698 - MIR SINE MIR -60 148 43 286 293 69 0 chr11 406132 406248 -150377305 + MER45A DNA AcHobo 55 178 0 269 55 16 142 chr11 407018 407201 -150376352 + (TCCTG)n Simple_repeat Simple_repeat 5 164 0 201 75 0 149 chr11 407256 407457 -150376096 + (TCCTG)n Simple_repeat Simple_repeat 1 171 0 284 85 0 144 chr11 407493 407611 -150375942 + (TCCTG)n Simple_repeat Simple_repeat 1 101 0 1177 227 70 23 chr11 407829 408217 -150375336 + MLT1C LTR MaLR 61 466 -1 210 37 0 0 chr11 409451 409478 -150374075 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3374 98 31 2 chr11 409478 409955 -150373598 - L1PA13 LINE L1 -13 6150 5660 1226 169 0 49 chr11 409955 410144 -150373409 + L1P LINE L1 3758 3932 -2214 2179 93 0 35 chr11 410144 410338 -150373215 - AluSx SINE Alu -11 301 121 2435 66 0 10 chr11 410338 410641 -150372912 - AluY SINE Alu -10 301 2 2179 93 0 35 chr11 410641 410758 -150372795 - AluSx SINE Alu -191 121 1 1226 169 0 49 chr11 410758 410834 -150372719 + L1P LINE L1 3932 4010 -2136 201 353 88 24 chr11 411005 411175 -150372378 - MIR SINE MIR -68 194 14 784 282 60 19 chr11 412071 412387 -150371166 - L1ME3A LINE L1 -6 6164 5836 347 328 33 61 chr11 412454 412634 -150370919 + L1MEd LINE L1 649 823 -5707 629 323 37 21 chr11 412650 413025 -150370528 + L1MEd LINE L1 780 1160 -5370 347 306 153 0 chr11 413179 413323 -150370230 + L1MEd LINE L1 2077 2242 -4298 981 278 65 10 chr11 413411 413796 -150369757 + L1MEd LINE L1 3563 3968 -2572 332 239 0 0 chr11 413847 413914 -150369639 + L1M4 LINE L1 3130 3196 -2950 8097 68 12 4 chr11 415457 416456 -150367097 - LTR13 LTR ERVK 0 1007 1 232 105 0 58 chr11 417773 417859 -150365694 + (GGGTG)n Simple_repeat Simple_repeat 5 85 0 380 156 0 39 chr11 417892 418071 -150365482 + (GGGTG)n Simple_repeat Simple_repeat 1 172 0 301 304 65 0 chr11 418218 418356 -150365197 + MER90 LTR ERV1 103 249 -326 227 264 214 0 chr11 418401 418583 -150364970 + MER90 LTR ERV1 344 564 -11 369 313 23 23 chr11 419620 419751 -150363802 - L2 LINE L2 -3 3310 3180 1901 133 59 0 chr11 420738 421024 -150362529 - AluSq SINE Alu -10 303 1 1802 200 99 16 chr11 421274 421310 -150362243 - MER45R DNA AcHobo -39 1542 1510 1980 157 0 0 chr11 421310 421615 -150361938 + AluSg SINE Alu 1 305 -5 1802 200 99 16 chr11 421615 422142 -150361411 - MER45R DNA AcHobo -71 1510 932 1976 223 80 62 chr11 422142 422271 -150361282 - L1MC3 LINE L1 -21 7764 7639 1986 116 4 0 chr11 422271 422548 -150361005 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 422554 422577 -150360976 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 1976 223 80 62 chr11 422577 422588 -150360965 - L1MC3 LINE L1 -150 7635 7626 2177 127 0 0 chr11 422588 422896 -150360657 + AluSx SINE Alu 1 308 -4 1976 223 80 62 chr11 422896 423459 -150360094 - L1MC3 LINE L1 -159 7626 7040 808 153 0 0 chr11 423459 423583 -150359970 - AluSg/x SINE Alu 0 312 189 947 175 24 101 chr11 423583 423921 -150359632 - L1MC3 LINE L1 -742 7043 6732 2824 148 18 4 chr11 423964 424478 -150359075 + LTR43 LTR ERV1 1 521 -81 723 119 90 0 chr11 424468 424602 -150358951 + MER51B LTR ERV1 229 374 -3 * 947 217 83 0 chr11 425235 425475 -150358078 - MLT1C LTR MaLR 0 467 208 2619 153 12 12 chr11 425475 425892 -150357661 + L1PA15 LINE L1 5744 6160 -5 244 204 0 0 chr11 428255 428304 -150355249 - MER53 DNA DNA 0 189 141 24 32 0 0 chr11 429463 429494 -150354059 + AT_rich Low_complexity Low_complexity 1 31 0 216 86 0 0 chr11 430062 430097 -150353456 + (TC)n Simple_repeat Simple_repeat 1 35 0 423 239 193 6 chr11 430097 430273 -150353280 + MLT1F LTR MaLR 170 378 -164 2073 142 0 3 chr11 430329 430640 -150352913 + AluJo SINE Alu 1 310 -2 245 392 0 0 chr11 430757 430877 -150352676 + L1M4 LINE L1 3797 3916 -2230 383 323 63 67 chr11 431137 431360 -150352193 + L1MC5 LINE L1 2176 2397 -4029 1673 151 33 27 chr11 431463 431800 -150351753 - MER1B DNA MER1_type 0 339 1 642 371 80 42 chr11 431988 432602 -150350951 - HAL1b LINE L1 -656 692 56 2103 129 0 3 chr11 432750 433061 -150350492 + AluSx SINE Alu 1 310 -2 2554 42 0 10 chr11 433772 434085 -150349468 - AluY SINE Alu -1 310 1 2452 70 0 0 chr11 434296 434596 -150348957 - AluY SINE Alu -11 300 1 225 197 128 0 chr11 435339 435456 -150348097 + (CTGGGG)n Simple_repeat Simple_repeat 5 136 0 1696 62 0 22 chr11 436404 436629 -150346924 - AluY SINE Alu -7 304 85 656 217 96 28 chr11 437039 437355 -150346198 + L1MC5 LINE L1 3176 7483 -758 655 292 13 14 chr11 437474 437794 -150345759 + MLT1I LTR MaLR 53 405 -4 2367 77 0 22 chr11 438173 438485 -150345068 - AluY SINE Alu -6 305 1 1408 81 0 41 chr11 439513 439710 -150343843 + AluY SINE Alu 106 294 -17 1673 177 0 4 chr11 439726 440024 -150343529 + AluJo SINE Alu 13 309 0 821 152 0 22 chr11 440062 440200 -150343353 - FLAM_A SINE Alu 0 142 8 372 235 61 0 chr11 440373 440471 -150343082 + MLT2B1 LTR ERVL 383 486 -34 354 188 0 0 chr11 440504 440605 -150342948 + (TATG)n Simple_repeat Simple_repeat 2 102 0 675 174 0 0 chr11 440633 440811 -150342742 + (TATG)n Simple_repeat Simple_repeat 3 180 0 216 0 0 0 chr11 440812 440836 -150342717 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 844 289 222 0 chr11 440865 441284 -150342269 + L2 LINE L2 2038 2549 -765 3129 197 76 54 chr11 441427 442431 -150341122 - L1MD1 LINE L1 0 6242 5221 1586 205 20 0 chr11 442449 442752 -150340801 - AluJb SINE Alu 0 312 4 340 177 0 0 chr11 442901 442963 -150340590 + MLT1I LTR MaLR 347 408 -1 299 162 0 29 chr11 443037 443081 -150340472 - MLT2B1 LTR ERVL 0 520 477 182 88 0 29 chr11 443081 443115 -150340438 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 299 162 0 29 chr11 443115 443138 -150340415 - MLT2B1 LTR ERVL -43 477 455 209 111 28 0 chr11 443140 443176 -150340377 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 301 145 53 92 chr11 443177 443253 -150340300 + L1MC3 LINE L1 6571 6643 -1142 920 128 7 0 chr11 443255 443527 -150340026 + (TAGA)n Simple_repeat Simple_repeat 1 274 0 1654 189 126 2 chr11 443549 443977 -150339576 - MLT2B1 LTR ERVL -39 481 1 996 280 106 29 chr11 444404 444679 -150338874 + L1ME2 LINE L1 4607 4859 -1287 216 0 0 0 chr11 444679 444703 -150338850 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2067 117 4 0 chr11 444706 444989 -150338564 - AluSx SINE Alu -30 282 1 996 280 106 29 chr11 444989 445305 -150338248 + L1ME2 LINE L1 4860 5248 -898 256 174 14 14 chr11 445305 445374 -150338179 + (TA)n Simple_repeat Simple_repeat 2 70 0 1209 292 49 17 chr11 445398 445929 -150337624 + L1ME2 LINE L1 5254 5801 -363 2034 172 86 21 chr11 445945 446376 -150337177 + LTR2B LTR ERV1 32 490 0 1226 104 21 16 chr11 446394 446587 -150336966 + AluJb SINE Alu 117 310 -2 460 276 163 9 chr11 446621 446842 -150336711 + L1ME2 LINE L1 5873 6127 -37 634 109 0 0 chr11 446842 446943 -150336610 + FRAM SINE Alu 66 166 -10 2164 106 18 0 chr11 446949 447232 -150336321 + AluSx SINE Alu 3 290 -22 25 40 0 20 chr11 447260 447280 -150336273 + AT_rich Low_complexity Low_complexity 1 20 -29 2227 115 0 7 chr11 447280 447575 -150335978 + AluSq SINE Alu 1 293 -20 25 40 0 20 chr11 447575 447604 -150335949 + AT_rich Low_complexity Low_complexity 20 49 0 205 186 0 0 chr11 447951 447994 -150335559 + T-rich Low_complexity Low_complexity 2 44 0 202 361 0 0 chr11 448919 449088 -150334465 + (CTG)n Simple_repeat Simple_repeat 3 171 0 1250 125 0 0 chr11 449818 449986 -150333567 - AluSg SINE Alu -142 168 1 2673 58 0 0 chr11 450290 450601 -150332952 + AluY SINE Alu 1 311 0 2323 99 0 10 chr11 450944 451257 -150332296 + AluY SINE Alu 1 310 -1 276 186 12 23 chr11 452285 452371 -150331182 + GA-rich Low_complexity Low_complexity 2 86 0 244 333 14 0 chr11 452569 452641 -150330912 - LTR40c LTR ERVL 0 465 393 345 270 107 6 chr11 454653 454812 -150328741 + L1MD2 LINE L1 4597 4771 -1375 715 154 8 15 chr11 454824 454954 -150328599 + FLAM_C SINE Alu 5 133 0 22 0 0 0 chr11 454954 454976 -150328577 + AT_rich Low_complexity Low_complexity 1 22 0 2324 113 3 0 chr11 455193 455504 -150328049 + AluSx SINE Alu 1 312 0 1119 144 0 28 chr11 455504 455684 -150327869 + AluSg/x SINE Alu 132 306 -4 2392 262 72 43 chr11 455686 456903 -150326650 + L1MD2 LINE L1 4982 6234 -8 243 287 87 9 chr11 456926 457041 -150326512 + L1MC4a LINE L1 5895 6018 -1790 23 33 0 0 chr11 457090 457120 -150326433 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 457791 457826 -150325727 + GC_rich Low_complexity Low_complexity 1 35 0 409 218 26 13 chr11 460254 460410 -150323143 + CT-rich Low_complexity Low_complexity 2 159 0 378 305 142 4 chr11 460519 460758 -150322795 - L1M4 LINE L1 -1559 4587 4316 * 2877 236 61 37 chr11 460753 461622 -150321931 - L1MB8 LINE L1 -1 6177 5288 2206 300 103 3 chr11 461621 461761 -150321792 - L1M4 LINE L1 -1818 4328 4203 * 189 0 0 0 chr11 461761 461782 -150321771 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2206 300 103 3 chr11 461782 462660 -150320893 - L1M4 LINE L1 -1943 4203 3208 189 0 0 0 chr11 463005 463026 -150320527 + (CA)n Simple_repeat Simple_repeat 2 22 0 348 301 68 37 chr11 463699 463862 -150319691 + L1M4 LINE L1 2760 2927 -3219 1831 264 58 72 chr11 463960 465091 -150318462 - L1M4 LINE L1 -800 5346 4232 429 334 17 16 chr11 465062 465375 -150318178 - L1MDb LINE L1 -5007 1580 1228 * 538 113 0 0 chr11 465435 465515 -150318038 - AluJ/FRAM SINE Alu -17 295 216 4013 249 32 7 chr11 465617 466758 -150316795 + L1M4 LINE L1 3222 4391 -1755 24 53 0 0 chr11 466891 466929 -150316624 + AT_rich Low_complexity Low_complexity 1 38 0 1502 156 81 0 chr11 466975 467282 -150316271 - MER44D DNA MER2_type -3 606 5 23 33 0 0 chr11 467283 467313 -150316240 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 467451 467479 -150316074 + AT_rich Low_complexity Low_complexity 1 28 0 2241 99 0 3 chr11 467724 468008 -150315545 + AluSc SINE Alu 1 283 -26 342 0 0 0 chr11 468016 468054 -150315499 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1770 141 24 24 chr11 468307 468480 -150315073 - L1MC/D LINE L1 -772 5587 5412 2509 206 55 67 chr11 468480 469207 -150314346 - MER72 LTR ERV1 0 722 5 1770 141 24 24 chr11 469207 469367 -150314186 - L1MC/D LINE L1 -946 5413 5254 1903 260 43 17 chr11 469819 470523 -150313030 + L1M4 LINE L1 2685 3406 -2740 2583 124 142 0 chr11 470626 471071 -150312482 + Tigger3(Golem) DNA MER2_type 2520 3027 -2 184 304 69 0 chr11 472476 472578 -150310975 - MIR SINE MIR -127 135 27 2060 120 10 20 chr11 473098 473399 -150310154 - AluJb SINE Alu -14 298 1 2384 106 0 0 chr11 473716 474017 -150309536 - AluY SINE Alu -10 301 1 919 146 22 6 chr11 474607 474785 -150308768 + L1MB4 LINE L1 5994 6174 -6 563 230 0 24 chr11 474807 474933 -150308620 + FLAM_C SINE Alu 1 123 -10 2421 71 3 0 chr11 474942 475236 -150308317 + AluY SINE Alu 1 295 -16 21 36 0 0 chr11 476945 476973 -150306580 + AT_rich Low_complexity Low_complexity 1 28 0 2222 122 3 0 chr11 477007 477301 -150306252 - AluSx SINE Alu -15 297 3 1007 125 0 0 chr11 477302 477438 -150306115 - AluSq/x SINE Alu -176 136 1 2513 135 37 23 chr11 478316 478752 -150304801 + MER83 LTR ERV1 1 442 -6 320 310 99 0 chr11 478752 478894 -150304659 + L1MC/D LINE L1 5443 5598 -2210 1938 234 23 41 chr11 479569 479673 -150303880 - L1MA9 LINE L1 -37 6275 6171 180 0 0 0 chr11 479673 479693 -150303860 + (TC)n Simple_repeat Simple_repeat 2 21 0 1938 234 23 41 chr11 479693 480100 -150303453 - L1MA9 LINE L1 -141 6171 5773 297 217 0 0 chr11 480097 480157 -150303396 + L1MA9 LINE L1 5933 5992 -320 * 2527 70 0 3 chr11 480379 480691 -150302862 - AluY SINE Alu 0 311 1 466 220 46 0 chr11 480691 480800 -150302753 + MLT1A2 LTR MaLR 260 373 -1 369 0 0 0 chr11 481022 481063 -150302490 + (TG)n Simple_repeat Simple_repeat 1 41 0 227 295 54 6 chr11 482329 482495 -150301058 - L1MEc LINE L1 -4092 2515 2342 1994 157 3 6 chr11 482754 483066 -150300487 - AluJo SINE Alu -1 311 1 982 166 0 13 chr11 483426 483583 -150299970 - FRAM SINE Alu -22 154 1 1911 154 71 6 chr11 487088 487439 -150296114 - MSTB LTR MaLR 0 426 53 4010 137 4 46 chr11 487439 488291 -150295262 + L1PA16 LINE L1 5372 6161 -2 433 248 6 31 chr11 488287 488448 -150295105 - L1M4 LINE L1 -864 5282 5126 * 348 307 0 0 chr11 489740 489890 -150293663 + (CA)n Simple_repeat Simple_repeat 2 151 0 21 89 0 0 chr11 491954 492010 -150291543 + GC_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 492116 492148 -150291405 + GC_rich Low_complexity Low_complexity 1 32 0 37 97 0 0 chr11 492194 492308 -150291245 + GC_rich Low_complexity Low_complexity 1 114 0 207 139 0 0 chr11 492308 492344 -150291209 + (CCG)n Simple_repeat Simple_repeat 3 38 0 27 96 0 0 chr11 492358 492441 -150291112 + GC_rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr11 495082 495106 -150288447 + (CTGGGG)n Simple_repeat Simple_repeat 6 29 0 2123 113 0 0 chr11 495555 495838 -150287715 + AluSx SINE Alu 1 283 -29 302 241 17 0 chr11 495842 495900 -150287653 + L1MCa LINE L1 2006 2064 -4362 * 432 223 10 26 chr11 495860 495963 -150287590 - L1MEc LINE L1 -1339 6983 1995 348 293 38 0 chr11 495942 496048 -150287505 - L1MEc LINE L1 -4358 2068 1959 * 309 348 11 0 chr11 495991 496080 -150287473 + L1MC4 LINE L1 6614 6703 -1339 * 827 193 13 13 chr11 496083 496233 -150287320 - AluJb SINE Alu -23 289 140 226 344 98 8 chr11 496886 497008 -150286545 + L2 LINE L2 2917 3049 -223 183 339 31 0 chr11 497610 497675 -150285878 + MIR SINE MIR 18 84 -124 193 279 136 61 chr11 497725 497872 -150285681 + MER5A DNA MER1_type 5 162 -27 * 245 323 114 0 chr11 497756 497897 -150285656 - MER5A DNA MER1_type -22 167 1 237 59 0 0 chr11 498202 498236 -150285317 + MLT1C LTR MaLR 107 140 -327 308 194 74 19 chr11 498262 498370 -150285183 + MLT1C LTR MaLR 302 415 -52 608 38 0 12 chr11 498374 498454 -150285099 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 2007 132 0 3 chr11 498457 498761 -150284792 - AluSx SINE Alu -3 309 7 21 36 0 0 chr11 500139 500167 -150283386 + GC_rich Low_complexity Low_complexity 1 28 0 2096 80 21 11 chr11 501858 502145 -150281408 + AluSq SINE Alu 8 297 -16 781 187 42 37 chr11 502152 502366 -150281187 + L1MB3 LINE L1 5967 6181 -2 183 80 0 0 chr11 502916 502941 -150280612 + (CCGAG)n Simple_repeat Simple_repeat 5 29 0 21 89 0 0 chr11 504887 504943 -150278610 + GC_rich Low_complexity Low_complexity 1 56 0 341 236 7 0 chr11 505124 505272 -150278281 + (CA)n Simple_repeat Simple_repeat 1 149 0 366 252 78 9 chr11 505277 505392 -150278161 + L1MA9 LINE L1 6152 6274 -38 285 263 93 85 chr11 506073 506320 -150277233 + SN5 Other centromeric 1 249 -206 367 74 19 0 chr11 506617 506671 -150276882 + L1MC1 LINE L1 6276 6330 -3 404 340 28 49 chr11 506695 506942 -150276611 - L3 LINE CR1 -541 1036 795 1363 97 5 0 chr11 507135 507364 -150276189 - AluSg/x SINE Alu 0 324 95 279 277 29 36 chr11 507618 507755 -150275798 + MLT1A2 LTR MaLR 239 374 0 787 198 74 33 chr11 507961 508204 -150275349 + MLT1B LTR MaLR 8 260 -130 506 236 202 55 chr11 508514 508806 -150274747 - MLT1J LTR MaLR -141 370 36 224 224 0 20 chr11 508807 508856 -150274697 + GA-rich Low_complexity Low_complexity 4 51 0 2023 122 28 0 chr11 509024 509312 -150274241 - AluSq SINE Alu -17 296 1 2040 116 41 0 chr11 509312 509605 -150273948 - AluSx SINE Alu -7 305 1 325 282 30 0 chr11 510018 510120 -150273433 - MIR SINE MIR -63 145 50 658 109 0 0 chr11 510535 510627 -150272926 - AluSp/q SINE Alu -12 301 210 243 0 0 0 chr11 511148 511175 -150272378 + (CAG)n Simple_repeat Simple_repeat 2 28 0 234 355 0 0 chr11 511340 511433 -150272120 - MLT1J LTR MaLR -77 434 342 381 246 131 0 chr11 511752 511882 -150271671 + LTR67 LTR ERVL 410 556 -1 1211 190 5 0 chr11 512230 512441 -150271112 + AluJo SINE Alu 1 212 -100 255 61 0 0 chr11 513442 513475 -150270078 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 671 276 24 68 chr11 513577 513791 -150269762 + L1M4 LINE L1 3106 3309 -2837 2144 139 0 0 chr11 513791 514101 -150269452 + AluSx SINE Alu 1 310 -2 671 276 24 68 chr11 514101 514136 -150269417 + L1M4 LINE L1 3309 3344 -2802 782 156 57 28 chr11 514199 514340 -150269213 + FAM SINE Alu 24 168 -17 941 101 7 0 chr11 514410 514549 -150269004 + AluSg/x SINE Alu 172 311 -1 1964 100 47 0 chr11 514567 514846 -150268707 + AluSg SINE Alu 1 292 -18 1741 128 0 0 chr11 514896 515139 -150268414 + AluSx SINE Alu 1 243 -69 1214 127 0 0 chr11 519038 519211 -150264342 + AluSp SINE Alu 130 302 -11 246 319 104 21 chr11 519522 519666 -150263887 - L1MEc LINE L1 -1892 5049 4894 688 261 55 25 chr11 520128 520475 -150263078 - L1MEc LINE L1 -3597 3344 2984 2226 120 0 3 chr11 520475 520783 -150262770 - AluSx SINE Alu -5 307 1 688 261 55 25 chr11 520783 520799 -150262754 - L1MEc LINE L1 -3957 2984 2970 484 330 35 40 chr11 520818 520856 -150262697 - L1MEc LINE L1 -4313 2809 2772 1817 185 0 0 chr11 520856 521153 -150262400 - AluJb SINE Alu -11 301 5 484 330 35 40 chr11 521153 521314 -150262239 - L1MEc LINE L1 -4350 2772 2611 2004 126 0 32 chr11 521318 521487 -150262066 - AluSg SINE Alu -10 300 144 2200 96 10 3 chr11 521487 521789 -150261764 - AluSq SINE Alu -9 304 1 2004 126 0 32 chr11 521789 521929 -150261624 - AluSg SINE Alu -166 144 1 1102 79 0 0 chr11 521932 522071 -150261482 - AluSq/x SINE Alu -174 139 1 238 305 30 8 chr11 522072 522203 -150261350 - L1MEc LINE L1 -4969 1454 1321 27 49 0 0 chr11 528128 528169 -150255384 + GC_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chr11 528288 528331 -150255222 + GC_rich Low_complexity Low_complexity 1 43 0 43 47 0 0 chr11 528415 528479 -150255074 + GC_rich Low_complexity Low_complexity 1 64 0 26 64 0 0 chr11 528545 528592 -150254961 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 528696 528717 -150254836 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr11 530647 530689 -150252864 + AT_rich Low_complexity Low_complexity 1 42 0 2179 116 0 3 chr11 531849 532151 -150251402 - AluSx SINE Alu -11 301 1 3505 107 23 16 chr11 583354 583926 -150199627 - THE1B-int LTR MaLR -93 1487 912 1243 106 98 25 chr11 583916 584161 -150199392 - THE1B-int LTR MaLR -1317 263 1 * 609 34 22 11 chr11 584161 584250 -150199303 - THE1B LTR MaLR 0 364 275 21 82 0 0 chr11 586852 586901 -150196652 + GC_rich Low_complexity Low_complexity 1 49 0 243 88 0 0 chr11 587185 587219 -150196334 + (A)n Simple_repeat Simple_repeat 1 34 0 220 262 0 0 chr11 587219 587261 -150196292 + polypurine Low_complexity Low_complexity 3 44 0 241 246 18 61 chr11 588282 588396 -150195157 + G-rich Low_complexity Low_complexity 4 112 0 265 202 238 0 chr11 593307 593391 -150190162 - L2 LINE L2 -1 3271 3168 420 335 148 32 chr11 593601 594133 -150189420 - L2 LINE L2 -462 2852 2259 379 371 38 3 chr11 594656 594814 -150188739 - L1M4 LINE L1 -773 5373 5222 1395 149 134 4 chr11 594814 594964 -150188589 - AluJo SINE Alu -16 296 167 197 0 71 0 chr11 594964 594992 -150188561 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1395 149 134 4 chr11 594992 595103 -150188450 - AluJo SINE Alu -145 167 1 379 371 38 3 chr11 595103 595257 -150188296 - L1M4 LINE L1 -924 5222 5050 481 170 211 55 chr11 595259 595477 -150188076 - Charlie5 DNA MER1_type -27 2585 2334 295 269 59 25 chr11 595531 595650 -150187903 - L1M4 LINE L1 -1127 5019 4897 396 367 37 21 chr11 595651 595839 -150187714 - L1M4 LINE L1 -2865 3281 3091 532 265 76 5 chr11 595885 596070 -150187483 - L1M4 LINE L1 -3167 2979 2782 2232 72 0 7 chr11 599238 599557 -150183996 - AluY SINE Alu 0 311 1 1298 181 15 34 chr11 600072 600338 -150183215 - AluJo SINE Alu -22 290 30 222 167 0 51 chr11 605427 605505 -150178048 + (CCCTAA)n Simple_repeat Simple_repeat 1 74 0 319 247 6 39 chr11 605901 606126 -150177427 + (CCCCG)n Simple_repeat Simple_repeat 1 217 0 225 143 41 0 chr11 607970 608019 -150175534 + A-rich Low_complexity Low_complexity 5 55 0 1046 168 7 5 chr11 612033 612454 -150171099 + (CAGCC)n Simple_repeat Simple_repeat 1 422 0 240 257 0 40 chr11 613568 613669 -150169884 + G-rich Low_complexity Low_complexity 3 99 0 222 230 11 46 chr11 613747 613834 -150169719 + G-rich Low_complexity Low_complexity 3 86 0 240 255 205 0 chr11 622851 623012 -150160541 + MLT1F LTR MaLR 246 439 -103 255 277 50 25 chr11 624076 624195 -150159358 + MLT1B LTR MaLR 1 122 -504 275 221 101 0 chr11 624534 624639 -150158914 + MLT1B LTR MaLR 252 337 -53 180 0 0 0 chr11 626067 626087 -150157466 + (GGCTG)n Simple_repeat Simple_repeat 2 21 0 248 229 82 0 chr11 628445 628506 -150155047 + MLT1I LTR MaLR 113 178 -231 233 183 17 0 chr11 629767 629827 -150153726 + (TG)n Simple_repeat Simple_repeat 1 61 0 2123 77 24 30 chr11 630646 630943 -150152610 + AluY SINE Alu 1 295 -16 275 242 10 0 chr11 631348 631447 -150152106 + (TG)n Simple_repeat Simple_repeat 1 100 0 258 183 0 0 chr11 633212 633283 -150150270 + (TG)n Simple_repeat Simple_repeat 1 71 0 294 282 0 0 chr11 633371 633541 -150150012 + (TG)n Simple_repeat Simple_repeat 2 171 0 330 337 70 11 chr11 636809 636996 -150146557 - L2 LINE L2 -155 3117 2920 182 188 0 0 chr11 637349 637381 -150146172 + MIR SINE MIR 118 149 -113 421 325 0 13 chr11 637604 637761 -150145792 + (TG)n Simple_repeat Simple_repeat 1 155 0 379 272 4 27 chr11 637808 638351 -150145202 + (TG)n Simple_repeat Simple_repeat 1 530 0 375 303 27 0 chr11 642537 642880 -150140673 + G-rich Low_complexity Low_complexity 1 352 0 261 328 48 42 chr11 646568 646757 -150136796 + MLT1D LTR MaLR 3 192 -313 467 190 146 0 chr11 646945 647082 -150136471 + MLT1D-int LTR MaLR 1 157 -1214 1199 195 42 4 chr11 647951 648192 -150135361 - AluJo SINE Alu -32 280 31 493 238 20 137 chr11 648211 648510 -150135043 + MLT1D-int LTR MaLR 1084 1347 -24 348 254 215 52 chr11 648564 648969 -150134584 + MLT1D LTR MaLR 30 500 -5 470 197 55 24 chr11 650616 650743 -150132810 + MER20 DNA MER1_type 1 131 -88 246 192 0 0 chr11 651391 651443 -150132110 + (CACG)n Simple_repeat Simple_repeat 1 52 0 2016 132 3 10 chr11 651641 651945 -150131608 - AluSx SINE Alu -10 302 1 468 272 99 47 chr11 651945 652158 -150131395 + HAL1 LINE L1 943 1166 -1341 252 86 0 0 chr11 652560 652595 -150130958 + (CAAT)n Simple_repeat Simple_repeat 4 38 0 226 335 52 26 chr11 652731 652961 -150130592 + L1MCc LINE L1 1176 1411 -5012 452 328 129 49 chr11 654110 654395 -150129158 + L1MCc LINE L1 1670 1931 -5088 2191 110 0 0 chr11 654395 654695 -150128858 - AluSg SINE Alu -10 300 1 452 328 129 49 chr11 654695 655048 -150128505 + L1MCc LINE L1 1931 2399 -4620 348 228 44 9 chr11 655324 655438 -150128115 - Charlie1 DNA MER1_type -21 2740 2623 511 176 12 0 chr11 656061 656146 -150127407 + AluJb SINE Alu 208 293 -19 573 329 54 0 chr11 656155 656177 -150127376 + L1MB5 LINE L1 5587 5606 -568 2409 70 0 0 chr11 656177 656476 -150127077 + AluY SINE Alu 1 299 -12 573 329 54 0 chr11 656476 656788 -150126765 + L1MB5 LINE L1 5606 5939 -235 470 188 152 0 chr11 656852 656964 -150126589 + L1MB5 LINE L1 6039 6167 -7 396 212 212 44 chr11 656967 657170 -150126383 + MER97b DNA MER1_type? 106 342 -711 350 282 39 47 chr11 657332 657566 -150125987 + MER97a DNA MER1_type? 579 810 -84 343 273 68 74 chr11 664031 664207 -150119346 + L1ME4a LINE L1 5266 5440 -722 304 330 10 21 chr11 665129 665226 -150118327 + L1ME4a LINE L1 6026 6121 0 1223 142 16 0 chr11 665885 666068 -150117485 + AluJo SINE Alu 3 188 -124 441 251 139 0 chr11 666894 667109 -150116444 - HAL1 LINE L1 -800 1707 1463 465 209 25 2 chr11 667110 667229 -150116324 + MSTD LTR MaLR 1 129 -245 352 153 11 93 chr11 667230 667413 -150116140 + G-rich Low_complexity Low_complexity 5 172 0 720 218 225 11 chr11 667413 667684 -150115869 + MSTD LTR MaLR 65 393 -3 321 266 217 4 chr11 667702 667946 -150115607 - HAL1 LINE L1 -1046 1461 1166 338 331 65 22 chr11 668129 668268 -150115285 - HAL1 LINE L1 -1591 916 772 279 286 80 0 chr11 668298 668410 -150115143 + HAL1 LINE L1 1304 1424 -1083 368 289 81 0 chr11 668806 668979 -150114574 - HAL1 LINE L1 -2274 233 47 286 221 229 13 chr11 670351 670487 -150113066 + MIR SINE MIR 3 156 -52 262 247 49 37 chr11 672814 672895 -150110658 + L1M3 LINE L1 5716 5797 -366 291 295 62 18 chr11 673008 673120 -150110433 - MER5A DNA MER1_type -29 160 44 1706 176 70 0 chr11 673127 673497 -150110056 + MER57A LTR ERV1 8 403 0 901 193 85 27 chr11 674466 674689 -150108864 + AluJo SINE Alu 76 311 -1 417 250 34 45 chr11 675267 675443 -150108110 + L1MC4 LINE L1 7869 8042 0 478 365 55 41 chr11 675446 675791 -150107762 + L1MEc LINE L1 1448 1797 -4599 580 332 60 35 chr11 676176 676607 -150106946 - L1ME1 LINE L1 -192 5974 5533 812 181 18 10 chr11 677122 677359 -150106194 - L1ME1 LINE L1 -726 5436 5198 456 326 33 15 chr11 677489 677759 -150105794 - L1MEc LINE L1 -5334 1062 788 204 231 0 0 chr11 677780 677832 -150105721 + (CA)n Simple_repeat Simple_repeat 1 52 0 345 265 119 19 chr11 678208 678468 -150105085 - L1MC5 LINE L1 -177 7784 7499 308 305 53 0 chr11 678468 678563 -150104990 - L1MD3 LINE L1 -19 7976 7877 482 259 69 41 chr11 678657 678947 -150104606 - L1MC5 LINE L1 -467 7494 7197 496 202 33 47 chr11 678947 679109 -150104444 - MLT1A2 LTR MaLR -219 155 1 4285 260 101 39 chr11 679366 680787 -150102766 - L1ME2 LINE L1 0 6233 4901 2218 98 0 3 chr11 680787 681108 -150102445 + AluSq SINE Alu 1 313 0 4285 260 101 39 chr11 681108 682862 -150100691 - L1ME2 LINE L1 -1332 4901 3257 1764 136 35 3 chr11 682862 683149 -150100404 + AluSx SINE Alu 1 296 -16 4285 260 101 39 chr11 683149 683452 -150100101 - L1ME2 LINE L1 -2976 3257 649 304 384 50 28 chr11 683531 683854 -150099699 - L1ME2 LINE L1 -5831 565 236 273 329 67 6 chr11 683877 684041 -150099512 - L1ME2 LINE L1 -6222 174 1 2332 109 0 0 chr11 684159 684471 -150099082 - AluSq SINE Alu -1 312 1 283 285 41 0 chr11 684627 684799 -150098754 + (TG)n Simple_repeat Simple_repeat 2 180 0 * 307 275 17 28 chr11 684777 684955 -150098598 + (TCTCTG)n Simple_repeat Simple_repeat 1 176 0 * 380 246 47 0 chr11 684834 685005 -150098548 + (TG)n Simple_repeat Simple_repeat 2 180 0 793 251 45 30 chr11 685231 685498 -150098055 + L1MC3 LINE L1 6461 6731 -1054 1088 223 7 41 chr11 685518 685787 -150097766 - AluJo SINE Alu -52 260 1 1886 157 0 0 chr11 685817 686103 -150097450 - AluJo SINE Alu -26 286 1 2334 60 0 47 chr11 686104 686423 -150097130 - AluY SINE Alu -7 304 1 1723 294 42 6 chr11 686432 687082 -150096471 + L1MC3 LINE L1 6726 7398 -387 469 237 124 6 chr11 687087 687256 -150096297 + L1MC3 LINE L1 7589 7777 -8 217 329 0 0 chr11 690589 690674 -150092879 + (TG)n Simple_repeat Simple_repeat 1 85 0 216 200 0 0 chr11 691078 691123 -150092430 + (TG)n Simple_repeat Simple_repeat 1 45 0 254 159 29 87 chr11 691673 691742 -150091811 + MER5A DNA MER1_type 57 121 -68 196 151 55 0 chr11 694609 694682 -150088871 + C-rich Low_complexity Low_complexity 1 77 0 531 270 90 49 chr11 697586 697945 -150085608 + L1M4c LINE L1 1424 1897 -4643 247 293 55 24 chr11 698333 698497 -150085056 + L1M4c LINE L1 2365 2533 -4007 583 260 72 100 chr11 698569 698930 -150084623 - MLT1A1 LTR MaLR 0 365 15 1463 307 97 24 chr11 698964 700055 -150083498 + L1M4c LINE L1 2655 3825 -2715 256 159 48 0 chr11 700064 700127 -150083426 + L1M4c LINE L1 4527 4592 -1948 699 201 8 0 chr11 700142 700276 -150083277 + Tigger7 DNA MER2_type 32 166 -567 1400 202 148 24 chr11 700325 700751 -150082802 + Tigger7 DNA MER2_type 262 740 -1747 611 178 65 0 chr11 700778 700885 -150082668 + FLAM_A SINE Alu 2 115 -18 597 203 8 0 chr11 700909 701032 -150082521 + Tigger7 DNA MER2_type 2364 2487 0 1263 284 72 62 chr11 701078 702248 -150081305 + L1M4c LINE L1 4662 5848 -712 287 179 90 0 chr11 705956 706023 -150077530 + MER5A DNA MER1_type 17 89 -100 406 349 0 0 chr11 710053 710228 -150073325 + G-rich Low_complexity Low_complexity 2 176 0 25 102 0 0 chr11 715769 715857 -150067696 + GC_rich Low_complexity Low_complexity 1 88 0 38 96 0 0 chr11 715960 716075 -150067478 + GC_rich Low_complexity Low_complexity 1 115 0 25 51 0 0 chr11 716178 716217 -150067336 + GC_rich Low_complexity Low_complexity 1 39 0 206 168 67 34 chr11 716225 716344 -150067209 + (CCGCG)n Simple_repeat Simple_repeat 5 127 0 243 0 0 0 chr11 716429 716456 -150067097 + (CCG)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr11 716457 716484 -150067069 + GC_rich Low_complexity Low_complexity 1 27 0 737 108 62 31 chr11 716509 716802 -150066751 + (CCGAG)n Simple_repeat Simple_repeat 1 302 0 1537 271 70 32 chr11 719031 719691 -150063862 + L1ME1 LINE L1 3504 4188 -1958 2260 56 7 3 chr11 719692 719999 -150063554 - AluY SINE Alu 0 311 9 333 393 94 0 chr11 720202 720403 -150063150 - L1 LINE L1 -1451 4695 4476 450 137 0 0 chr11 720405 720500 -150063053 + (TC)n Simple_repeat Simple_repeat 2 96 0 941 128 0 0 chr11 720602 720743 -150062810 + AluSp/q SINE Alu 165 305 -8 269 294 85 34 chr11 720748 720983 -150062570 + L1ME1 LINE L1 4225 4471 -1675 23 33 0 0 chr11 721026 721056 -150062497 + AT_rich Low_complexity Low_complexity 1 30 0 1479 182 0 62 chr11 721094 721207 -150062346 + AluJo SINE Alu 2 120 -192 1700 177 186 0 chr11 721207 721568 -150061985 + MSTA LTR MaLR 1 428 0 1479 182 0 62 chr11 721568 721761 -150061792 + AluJo SINE Alu 120 289 -23 1525 278 26 2 chr11 721787 722240 -150061313 + L1ME1 LINE L1 5511 5974 -192 207 0 0 0 chr11 722461 722484 -150061069 + (TGGG)n Simple_repeat Simple_repeat 2 24 0 2053 116 0 10 chr11 722564 722699 -150060854 + AluSx SINE Alu 1 136 -176 1899 72 35 88 chr11 722699 723017 -150060536 + AluY SINE Alu 1 301 -10 2053 116 0 10 chr11 723017 723183 -150060370 + AluSx SINE Alu 136 299 -13 209 288 30 0 chr11 725067 725133 -150058420 - MIR3 SINE MIR -53 155 88 338 226 60 38 chr11 725299 725432 -150058121 - L1ME4a LINE L1 -22 6099 5964 746 194 23 46 chr11 725475 725692 -150057861 - L1MB8 LINE L1 -3 6175 5964 2114 98 44 0 chr11 725696 725993 -150057560 - AluSx SINE Alu 0 312 3 1340 248 13 31 chr11 725996 726379 -150057174 - L1MB7 LINE L1 -46 6138 5763 4776 204 15 51 chr11 726401 726682 -150056871 - L1MB7 LINE L1 -1490 4656 4366 2450 77 0 0 chr11 726682 726993 -150056560 - AluY SINE Alu 0 311 1 4776 204 15 51 chr11 726993 727356 -150056197 - L1MB7 LINE L1 -1780 4366 3991 2413 70 0 3 chr11 727356 727657 -150055896 + AluY SINE Alu 1 300 -11 4776 204 15 51 chr11 727657 727698 -150055855 - L1MB7 LINE L1 -2155 3991 3950 2179 105 3 16 chr11 727698 728012 -150055541 + AluSg SINE Alu 1 310 0 4776 204 15 51 chr11 728012 728343 -150055210 - L1MB7 LINE L1 -2196 3950 3695 2218 84 10 26 chr11 728343 728654 -150054899 - AluSx SINE Alu -6 306 1 4776 204 15 51 chr11 728654 728968 -150054585 - L1MB7 LINE L1 -2451 3695 3371 458 287 191 19 chr11 729059 729388 -150054165 + L2 LINE L2 2644 3030 -283 2177 186 18 0 chr11 729389 729771 -150053782 - MLT1B LTR MaLR 0 390 2 1724 146 23 0 chr11 729785 730045 -150053508 - AluJb SINE Alu -46 266 1 359 293 168 22 chr11 730155 730376 -150053177 - L1M LINE L1 -733 5429 5177 1901 140 0 55 chr11 730404 730732 -150052821 - AluSx SINE Alu -2 310 1 1889 185 103 3 chr11 732049 732438 -150051115 - MSTA LTR MaLR 0 428 1 1691 113 9 118 chr11 733625 733954 -150049599 - AluJo SINE Alu -8 294 2 689 224 59 0 chr11 735318 735488 -150048065 + MLT1B LTR MaLR 5 184 -206 22 0 0 0 chr11 735490 735512 -150048041 + GC_rich Low_complexity Low_complexity 1 22 0 222 118 0 0 chr11 736726 736760 -150046793 + (TCC)n Simple_repeat Simple_repeat 2 35 0 1267 197 18 10 chr11 738519 738907 -150044646 + MER66B LTR ERV1 1 486 0 2263 94 0 3 chr11 739263 739562 -150043991 + AluY SINE Alu 1 298 -13 479 321 19 24 chr11 739612 739922 -150043631 - L1ME2 LINE L1 -2 6162 5852 4007 90 0 4 chr11 739952 740465 -150043088 + MER9 LTR ERVK 1 511 0 820 178 0 55 chr11 740545 740708 -150042845 - L1MB3 LINE L1 0 6183 6030 389 135 0 27 chr11 740716 740790 -150042763 - L1MB3 LINE L1 -82 6101 6030 393 135 0 27 chr11 740798 740872 -150042681 - L1MB3 LINE L1 -82 6101 6030 390 135 0 27 chr11 740880 740954 -150042599 - L1MB3 LINE L1 -82 6101 6030 439 108 0 27 chr11 740962 741036 -150042517 - L1MB3 LINE L1 -82 6101 6030 424 122 0 27 chr11 741044 741118 -150042435 - L1MB3 LINE L1 -82 6101 6030 1328 165 21 34 chr11 741126 741417 -150042136 - L1MB3 LINE L1 -82 6101 5815 1258 106 96 24 chr11 741445 741653 -150041900 - AluJo SINE Alu -75 237 15 405 125 42 0 chr11 741655 741727 -150041826 - L1MB3 LINE L1 -339 5832 5758 307 360 65 45 chr11 743378 743505 -150040048 + ERVL LTR ERVL 1575 1698 -4066 1696 191 57 17 chr11 743505 743856 -150039697 - MLT1A1 LTR MaLR 0 365 1 307 360 65 45 chr11 743856 744020 -150039533 + ERVL LTR ERVL 1698 1872 -3892 292 358 33 8 chr11 744060 744180 -150039373 - ERVL LTR ERVL -3757 2007 1885 2069 119 3 3 chr11 744205 744523 -150039030 - AluSx SINE Alu 0 312 1 1054 341 40 22 chr11 744534 745079 -150038474 + ERVL LTR ERVL 2383 2937 -2827 878 144 20 7 chr11 745088 745241 -150038312 + FRAM SINE Alu 1 154 -22 1076 337 76 6 chr11 745292 745767 -150037786 + ERVL LTR ERVL 2985 3492 -2272 785 353 43 26 chr11 745937 746401 -150037152 + ERVL LTR ERVL 3572 4043 -1721 707 304 130 9 chr11 746432 746856 -150036697 + ERVL LTR ERVL 4080 4554 -1100 2439 80 0 0 chr11 747329 747641 -150035912 - AluSx SINE Alu 0 312 1 231 36 0 0 chr11 747845 747873 -150035680 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1497 161 4 4 chr11 747877 748126 -150035427 - L1PB1 LINE L1 -8 6143 5895 393 284 104 61 chr11 748905 749218 -150034335 + L1M4 LINE L1 3852 4150 -1996 2368 67 0 13 chr11 749218 749533 -150034020 + AluY SINE Alu 1 311 0 393 284 104 61 chr11 749533 749854 -150033699 + L1M4 LINE L1 4150 4513 -1633 758 148 0 11 chr11 749858 750040 -150033513 + (GA)n Simple_repeat Simple_repeat 1 180 0 2564 30 0 7 chr11 750446 750751 -150032802 + AluYa5 SINE Alu 9 311 0 1066 160 6 0 chr11 750751 750926 -150032627 + AluJb SINE Alu 124 299 -13 2298 66 10 3 chr11 750949 751252 -150032301 + AluY SINE Alu 1 305 -6 415 247 113 21 chr11 751553 751739 -150031814 + MER63A DNA MER1_type 3 205 -5 839 234 147 7 chr11 752254 752561 -150030992 - MLT1A1 LTR MaLR -13 352 3 182 146 0 85 chr11 753328 753410 -150030143 + (TGGGGG)n Simple_repeat Simple_repeat 5 79 0 182 36 0 36 chr11 753479 753507 -150030046 + (TGGGGG)n Simple_repeat Simple_repeat 5 31 0 335 156 0 142 chr11 753534 753739 -150029814 + G-rich Low_complexity Low_complexity 5 180 0 2042 126 7 10 chr11 754660 754969 -150028584 + AluSx SINE Alu 5 312 0 262 289 53 0 chr11 754983 755059 -150028494 + L1MC/D LINE L1 5726 5805 -2003 281 287 204 12 chr11 755104 755271 -150028282 - MIR SINE MIR -1 261 63 356 149 96 64 chr11 757851 757945 -150025608 - LTR26 LTR ERV1 -253 350 254 2028 100 28 7 chr11 757945 758234 -150025319 - AluSx SINE Alu -17 295 1 229 269 45 0 chr11 758422 758489 -150025064 + L1M4 LINE L1 3913 3982 -2164 619 283 134 26 chr11 758543 758916 -150024637 - L1MD3 LINE L1 -827 6981 6613 200 273 45 45 chr11 759170 759346 -150024207 + C-rich Low_complexity Low_complexity 4 179 0 481 329 91 18 chr11 759622 759953 -150023600 - L1MC4a LINE L1 -1237 6571 6217 1793 191 48 5 chr11 759964 760029 -150023524 - Tigger2a DNA MER2_type -2276 432 371 1701 158 14 0 chr11 760029 760313 -150023240 - AluJo SINE Alu -24 288 1 1793 191 48 5 chr11 760313 760625 -150022928 - Tigger2a DNA MER2_type -2337 371 39 2250 79 0 16 chr11 760804 761109 -150022444 - AluY SINE Alu -11 300 1 521 290 17 34 chr11 761362 761538 -150022015 - HsTC2 DNA Tc2 -537 1361 1189 311 269 6 103 chr11 761758 761914 -150021639 + L1MB7 LINE L1 3857 3997 -2149 1097 192 96 69 chr11 762214 762510 -150021043 + MLT1B LTR MaLR 43 350 -40 2038 110 0 17 chr11 762510 762809 -150020744 - AluSx SINE Alu -18 294 1 1097 192 96 69 chr11 762809 762846 -150020707 + MLT1B LTR MaLR 350 385 -5 972 127 18 30 chr11 762929 763095 -150020458 + AluJb SINE Alu 129 292 -20 430 281 88 16 chr11 763142 763391 -150020162 + L1MB7 LINE L1 4304 4570 -1576 239 365 16 16 chr11 763548 763674 -150019879 - L1M4 LINE L1 -2286 3860 3735 405 245 0 0 chr11 764812 765109 -150018444 + (TG)n Simple_repeat Simple_repeat 1 297 0 363 233 0 0 chr11 765121 765297 -150018256 + (TG)n Simple_repeat Simple_repeat 2 177 0 196 196 0 21 chr11 765318 765415 -150018138 + (TG)n Simple_repeat Simple_repeat 2 96 0 262 257 0 20 chr11 765428 765529 -150018024 + (TG)n Simple_repeat Simple_repeat 1 99 0 191 268 107 27 chr11 765751 765863 -150017690 + L2 LINE L2 3193 3313 0 303 93 0 0 chr11 766021 766064 -150017489 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 2048 137 16 0 chr11 766069 766376 -150017177 - AluSx SINE Alu 0 312 1 332 206 41 0 chr11 766864 766937 -150016616 + MIR SINE MIR 70 145 -117 2134 184 78 42 chr11 767339 767710 -150015843 + L1MB7 LINE L1 4963 5319 -865 2248 75 7 7 chr11 767710 768005 -150015548 + AluY SINE Alu 1 295 -16 2134 184 78 42 chr11 768005 768467 -150015086 + L1MB7 LINE L1 5319 5825 -359 454 151 11 75 chr11 768471 768564 -150014989 + L1M3 LINE L1 5656 5742 -429 343 274 30 30 chr11 769266 769284 -150014269 - L1MA10 LINE L1 0 6334 6317 8921 240 53 42 chr11 769284 769491 -150014062 - L1ME1 LINE L1 -10 6225 6022 2519 91 81 37 chr11 769491 769900 -150013653 + MSTA LTR MaLR 1 427 -1 8921 240 53 42 chr11 769900 770478 -150013075 - L1ME1 LINE L1 -213 6022 5452 2174 109 0 13 chr11 770478 770782 -150012771 - AluSx SINE Alu -12 300 1 8921 240 53 42 chr11 770782 771290 -150012263 - L1ME1 LINE L1 -783 5452 4951 2406 183 17 19 chr11 771290 771711 -150011842 + L1MB2 LINE L1 5698 6119 -52 1244 167 89 60 chr11 771711 771993 -150011560 + AluJb SINE Alu 1 290 -22 2406 183 17 19 chr11 771993 772041 -150011512 + L1MB2 LINE L1 6119 6166 -5 8921 240 53 42 chr11 772041 772188 -150011365 - L1ME1 LINE L1 -1284 4951 4807 2243 108 0 9 chr11 772188 772503 -150011050 - AluSx SINE Alu 0 312 1 8921 240 53 42 chr11 772503 772747 -150010806 - L1ME1 LINE L1 -1428 4807 4567 1940 129 0 3 chr11 772747 773042 -150010511 - AluSx SINE Alu -18 294 1 8921 240 53 42 chr11 773042 775092 -150008461 - L1ME1 LINE L1 -1668 4567 2441 1577 247 62 5 chr11 775094 775499 -150008054 - L1ME1 LINE L1 -5785 611 184 2139 171 33 10 chr11 775599 776335 -150007218 + L1MB3 LINE L1 1614 2450 -3934 2290 95 0 0 chr11 776336 776631 -150006922 + AluY SINE Alu 1 295 -16 3834 232 25 14 chr11 776631 777820 -150005733 + L1MB3 LINE L1 2651 3853 -2529 1614 120 12 4 chr11 777829 778071 -150005482 - THE1B LTR MaLR 0 364 121 5209 235 53 47 chr11 778080 779278 -150004275 + L1MB3 LINE L1 3858 5072 -1310 2045 117 7 3 chr11 779278 779578 -150003975 - AluSq SINE Alu -12 301 1 5209 235 53 47 chr11 779578 780098 -150003455 + L1MB3 LINE L1 5072 5587 -795 2260 109 0 0 chr11 780098 780530 -150003023 - AluSx SINE Alu 0 432 1 2630 251 72 19 chr11 780530 781298 -150002255 + L1MB3 LINE L1 5572 6379 -40 2311 78 0 0 chr11 781300 781593 -150001960 + AluSc SINE Alu 6 298 -11 736 139 9 0 chr11 781606 781721 -150001832 + FLAM_C SINE Alu 6 121 -22 198 0 0 0 chr11 781721 781743 -150001810 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1227 286 51 0 chr11 784736 785190 -149998363 - L1MB3 LINE L1 -84 6099 5623 336 250 20 10 chr11 785191 785291 -149998262 - L1MB3 LINE L1 -622 5549 5449 241 304 0 0 chr11 785296 785365 -149998188 + L1ME LINE L1 5590 5658 -463 297 277 34 25 chr11 787212 787331 -149996222 - L1ME LINE L1 -622 5824 5705 1224 52 0 7 chr11 787735 787888 -149995665 + AluY SINE Alu 1 152 -159 2320 91 3 0 chr11 788443 788751 -149994802 - AluSg SINE Alu -1 309 1 502 254 60 50 chr11 789363 789761 -149993792 - L1ME LINE L1 -1331 5095 4680 945 269 177 13 chr11 789861 790240 -149993313 + LTR33 LTR ERVL 32 472 -49 4050 217 74 89 chr11 790242 790572 -149992981 - L1MCa LINE L1 -3302 3124 2790 2126 133 0 0 chr11 790572 790881 -149992672 - AluSg SINE Alu -1 309 1 4050 217 74 89 chr11 790881 791118 -149992435 - L1MCa LINE L1 -3636 2790 2551 318 24 24 0 chr11 791118 791160 -149992393 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2203 82 7 0 chr11 791160 791442 -149992111 - AluSp SINE Alu -1 325 1 4050 217 74 89 chr11 791442 791625 -149991928 - L1MCa LINE L1 -3874 2552 2368 2175 127 41 36 chr11 791625 791987 -149991566 + THE1B LTR MaLR 1 364 0 4050 217 74 89 chr11 791987 792919 -149990634 - L1MCa LINE L1 -4058 2368 1423 1277 122 0 0 chr11 792919 793100 -149990453 - AluSq SINE Alu -1 312 132 2400 73 0 10 chr11 793100 793414 -149990139 - AluY SINE Alu 0 311 1 4050 217 74 89 chr11 793414 794127 -149989426 - L1MCa LINE L1 -5001 1425 575 1514 165 0 18 chr11 794132 794411 -149989142 - L1MCa LINE L1 -5811 615 342 1247 174 41 90 chr11 794553 794862 -149988691 - L1MCa LINE L1 -6063 363 71 2306 78 3 3 chr11 794862 795157 -149988396 - AluY SINE Alu -16 295 1 1247 174 41 90 chr11 795157 795192 -149988361 - L1MCa LINE L1 -6355 71 36 1991 205 66 35 chr11 795592 795848 -149987705 - MER90 LTR ERV1 0 614 367 2231 108 0 3 chr11 795848 796162 -149987391 - AluSq SINE Alu 0 313 1 1991 205 66 35 chr11 796162 796451 -149987102 - MER90 LTR ERV1 -247 367 52 12992 171 16 33 chr11 796839 796885 -149986668 + L1 LINE L1 2350 2395 -3751 2150 121 16 0 chr11 796885 797192 -149986361 + AluSx SINE Alu 1 312 0 12992 171 16 33 chr11 797192 797686 -149985867 + L1 LINE L1 2395 2896 -3250 2215 98 10 0 chr11 797686 797992 -149985561 + AluSx SINE Alu 2 310 -2 12992 171 16 33 chr11 797992 798662 -149984891 + L1 LINE L1 2896 3576 -2570 1863 97 45 4 chr11 798662 798956 -149984597 + AluY SINE Alu 1 305 0 12992 171 16 33 chr11 798956 800789 -149982764 + L1 LINE L1 3576 5345 -801 2115 96 0 55 chr11 800789 801101 -149982452 - AluSx SINE Alu -17 295 1 228 287 6 54 chr11 801181 801200 -149982353 - L1MA10 LINE L1 0 6334 6316 674 190 13 91 chr11 801200 801432 -149982121 - L1ME2 LINE L1 -9 6155 5942 556 297 89 12 chr11 801456 801793 -149981760 - L1M4c LINE L1 -4782 1602 1240 978 212 41 17 chr11 801798 802248 -149981305 - MLT1E LTR MaLR -37 556 1 642 224 77 29 chr11 802275 802445 -149981108 - L2 LINE L2 -1034 2280 2103 205 253 19 45 chr11 803403 803557 -149979996 + (GGGTG)n Simple_repeat Simple_repeat 3 152 0 * 275 149 93 43 chr11 803442 803603 -149979950 + (CTGGGG)n Simple_repeat Simple_repeat 3 171 0 300 219 0 0 chr11 812815 812897 -149970656 + (CCCCG)n Simple_repeat Simple_repeat 1 82 0 184 184 0 26 chr11 813667 813743 -149969810 + G-rich Low_complexity Low_complexity 1 74 0 541 253 124 62 chr11 814484 814903 -149968650 - MLT1C LTR MaLR -15 452 8 2240 107 3 0 chr11 816543 816851 -149966702 + AluSq SINE Alu 1 309 -4 182 319 190 0 chr11 817184 817300 -149966253 - L2 LINE L2 0 3313 3176 328 373 0 0 chr11 817530 817640 -149965913 + (TGGG)n Simple_repeat Simple_repeat 1 110 0 253 307 7 15 chr11 822224 822361 -149961192 + (CCA)n Simple_repeat Simple_repeat 3 138 0 231 307 7 15 chr11 823895 824032 -149959521 + (CCA)n Simple_repeat Simple_repeat 3 138 0 471 299 147 0 chr11 824378 824582 -149958971 - L2 LINE L2 -1217 2097 1864 2317 171 69 19 chr11 824584 825106 -149958447 - MER41C LTR ERV1 0 554 7 23 33 0 0 chr11 825720 825750 -149957803 + GC_rich Low_complexity Low_complexity 1 30 0 260 294 35 12 chr11 826690 826775 -149956778 + MIR3 SINE MIR 107 193 -15 2192 152 89 8 chr11 826885 827279 -149956274 - MSTA LTR MaLR -2 426 1 200 293 0 12 chr11 828498 828580 -149954973 + G-rich Low_complexity Low_complexity 3 83 0 352 321 49 40 chr11 829741 829965 -149953588 - L1MC5 LINE L1 -741 7220 6995 288 345 28 0 chr11 830317 830459 -149953094 - L1MCa LINE L1 -3791 2635 2490 307 298 53 53 chr11 830485 830673 -149952880 - L1MCa LINE L1 -3964 2462 2275 2265 102 0 0 chr11 831355 831659 -149951894 - AluSx SINE Alu -8 304 1 379 280 77 10 chr11 833776 833983 -149949570 + MER106B DNA MER1_type 7 227 -832 596 285 131 15 chr11 834022 834572 -149948981 + MER106B DNA MER1_type 352 1059 0 560 301 97 11 chr11 836213 836575 -149946978 - L1MD3 LINE L1 0 7995 7603 340 178 0 97 chr11 838361 838546 -149945007 + (CACCC)n Simple_repeat Simple_repeat 3 169 0 261 191 0 96 chr11 838557 838714 -149944839 + (CACCC)n Simple_repeat Simple_repeat 3 144 0 219 216 20 0 chr11 839401 839452 -149944101 - MIR SINE MIR -60 148 97 207 392 110 18 chr11 841633 842133 -149941420 + L2 LINE L2 2035 2580 -734 419 330 68 56 chr11 842803 843158 -149940395 + HAL1b LINE L1 335 693 -655 227 274 0 12 chr11 843945 844029 -149939524 - L1 LINE L1 -1082 5064 4982 231 200 40 0 chr11 846124 846174 -149937379 + (CCCTAG)n Simple_repeat Simple_repeat 6 57 0 348 253 66 0 chr11 847252 847418 -149936135 + (CAGGG)n Simple_repeat Simple_repeat 4 180 0 427 160 67 0 chr11 847532 848057 -149935496 + (CGG)n Simple_repeat Simple_repeat 1 560 0 2284 82 0 3 chr11 850813 851107 -149932446 + AluY SINE Alu 5 297 -14 520 187 0 37 chr11 852487 852616 -149930937 - L1PA8A LINE L1 0 6131 6025 207 0 0 0 chr11 852651 852674 -149930879 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1039 33 0 0 chr11 852676 852798 -149930755 - L1PA4 LINE L1 -13 6142 6021 958 80 0 22 chr11 852815 852953 -149930600 - L1PA4 LINE L1 0 6155 6021 1000 58 0 22 chr11 852970 853108 -149930445 - L1PA4 LINE L1 0 6155 6021 805 249 47 8 chr11 853113 853370 -149930183 - L1MC4 LINE L1 -994 7048 6782 27 29 0 0 chr11 861900 861934 -149921619 + AT_rich Low_complexity Low_complexity 1 34 0 2479 58 0 3 chr11 861934 862243 -149921310 - AluY SINE Alu -3 308 1 219 69 0 0 chr11 862550 862579 -149920974 + (T)n Simple_repeat Simple_repeat 1 29 0 398 322 141 34 chr11 865927 866150 -149917403 + L1M4 LINE L1 4508 4706 -1440 2060 103 17 13 chr11 866150 866451 -149917102 + AluSx SINE Alu 11 312 0 2184 102 0 3 chr11 866458 866753 -149916800 + AluSg SINE Alu 1 294 -16 398 322 141 34 chr11 866753 867118 -149916435 + L1M4 LINE L1 4711 5168 -978 2229 110 3 0 chr11 867178 867486 -149916067 + AluSx SINE Alu 1 309 -3 620 288 56 28 chr11 867553 867838 -149915715 - HAL1 LINE L1 -799 1708 1416 2488 79 0 0 chr11 868149 868491 -149915062 + THE1A LTR MaLR 14 355 0 11729 100 4 19 chr11 868492 868928 -149914625 + THE1A-int LTR MaLR 3 444 -1136 2095 102 18 0 chr11 868928 869212 -149914341 + AluSx SINE Alu 1 289 -23 11729 100 4 19 chr11 869212 870378 -149913175 + THE1A-int LTR MaLR 444 1580 0 2638 69 29 6 chr11 870378 870725 -149912828 + THE1A LTR MaLR 1 355 0 1695 137 21 27 chr11 870725 871054 -149912499 + THE1C LTR MaLR 49 375 0 2483 71 0 0 chr11 871299 871609 -149911944 - AluY SINE Alu -1 310 1 417 316 99 0 chr11 871648 871819 -149911734 + MIR SINE MIR 4 191 -71 229 128 0 139 chr11 872638 872724 -149910829 + (CGGGA)n Simple_repeat Simple_repeat 2 75 0 217 204 51 51 chr11 878859 878957 -149904596 + G-rich Low_complexity Low_complexity 4 101 0 206 255 20 0 chr11 880222 880273 -149903280 + MIR SINE MIR 90 141 -67 848 237 117 41 chr11 880283 880701 -149902852 + MLT1C LTR MaLR 6 455 -12 231 253 0 0 chr11 881062 881157 -149902396 + (CACCC)n Simple_repeat Simple_repeat 5 99 0 218 318 7 13 chr11 883158 883312 -149900241 + (TGG)n Simple_repeat Simple_repeat 1 153 0 207 328 0 0 chr11 883367 883486 -149900067 + (TGG)n Simple_repeat Simple_repeat 3 121 0 217 314 7 15 chr11 885374 885511 -149898042 + (TGG)n Simple_repeat Simple_repeat 3 138 0 242 307 7 15 chr11 887045 887182 -149896371 + (TGG)n Simple_repeat Simple_repeat 3 138 0 2930 214 22 27 chr11 1089123 1090156 -149693397 + L1P3 LINE L1 981 2000 -4461 5704 85 2 0 chr11 1090256 1091112 -149692441 - L1P LINE L1 -1542 4604 3747 2314 11 0 0 chr11 1091111 1091530 -149692023 + L1P1 LINE L1 5133 5551 -604 * 411 172 188 39 chr11 1092520 1092648 -149690905 - L2 LINE L2 0 3313 3167 349 227 33 60 chr11 1092897 1093047 -149690506 - L1MD3 LINE L1 -8 7987 7842 528 211 17 18 chr11 1093047 1093177 -149690376 - MER20 DNA MER1_type -57 162 48 492 303 92 80 chr11 1093649 1094249 -149689304 + L1MC/D LINE L1 4785 5449 -767 236 363 48 0 chr11 1094252 1094398 -149689155 - MLT1I LTR MaLR -13 396 244 2271 233 105 27 chr11 1094679 1095037 -149688516 - L1 LINE L1 -3739 3826 3497 366 91 0 0 chr11 1095037 1095092 -149688461 + (TG)n Simple_repeat Simple_repeat 2 56 0 2271 233 105 27 chr11 1095092 1095897 -149687656 - L1 LINE L1 -4068 3497 2582 1967 148 167 11 chr11 1098692 1099063 -149684490 - Tigger2a DNA MER2_type -2 432 4 199 378 75 21 chr11 1099646 1099834 -149683719 - L2 LINE L2 -14 3299 3102 245 327 154 29 chr11 1099967 1100175 -149683378 - L2 LINE L2 -509 2805 2572 281 246 100 18 chr11 1102159 1102269 -149681284 + MIR SINE MIR 117 235 -27 316 249 228 40 chr11 1102597 1103023 -149680530 - L2 LINE L2 -735 2579 2074 1610 53 18 0 chr11 1103112 1103339 -149680214 - L1PA5 LINE L1 -253 5901 5671 187 223 97 39 chr11 1103601 1103704 -149679849 - L2 LINE L2 -1688 1626 1518 1684 32 0 0 chr11 1103740 1103960 -149679593 + L1P2 LINE L1 5334 5553 -601 2022 99 28 62 chr11 1104075 1104397 -149679156 - AluSx SINE Alu 0 312 2 2213 64 43 0 chr11 1104471 1104751 -149678802 - AluY SINE Alu -17 294 3 699 207 0 15 chr11 1104755 1104890 -149678663 - FLAM_C SINE Alu 0 133 1 200 322 25 34 chr11 1104909 1105027 -149678526 + MER5A DNA MER1_type 46 162 -27 1814 144 0 23 chr11 1105480 1105779 -149677774 - AluJo SINE Alu -20 292 1 3560 44 9 0 chr11 1107134 1107564 -149675989 + L1PA6 LINE L1 5721 6154 0 1492 205 166 27 chr11 1107916 1108326 -149675227 - MLT1C LTR MaLR 0 467 1 239 302 52 10 chr11 1110989 1111085 -149672468 + L2 LINE L2 3174 3273 -40 260 326 132 21 chr11 1111597 1111741 -149671812 + MIR SINE MIR 1 160 -102 233 235 176 29 chr11 1112041 1112143 -149671410 - MIR3 SINE MIR -7 201 85 261 119 0 0 chr11 1114234 1114276 -149669277 + (T)n Simple_repeat Simple_repeat 1 42 0 39 92 0 0 chr11 1114781 1114890 -149668663 + GC_rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr11 1114967 1114990 -149668563 + GC_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 1115014 1115059 -149668494 + GC_rich Low_complexity Low_complexity 1 45 0 248 164 45 15 chr11 1115233 1115300 -149668253 + (CCGGG)n Simple_repeat Simple_repeat 3 71 0 546 261 0 0 chr11 1115483 1115659 -149667894 + (CTGGGG)n Simple_repeat Simple_repeat 3 178 0 233 170 0 38 chr11 1116154 1116207 -149667346 + GA-rich Low_complexity Low_complexity 2 52 0 25 51 0 0 chr11 1116440 1116479 -149667074 + GC_rich Low_complexity Low_complexity 1 39 0 213 125 62 0 chr11 1116530 1116578 -149666975 + (CCCCG)n Simple_repeat Simple_repeat 3 53 0 226 217 9 47 chr11 1116599 1116705 -149666848 + G-rich Low_complexity Low_complexity 1 102 0 3065 162 34 26 chr11 1116846 1117463 -149666090 - L1MC1 LINE L1 -172 6161 5540 400 341 97 19 chr11 1117728 1118048 -149665505 + MLT1I LTR MaLR 42 386 -23 1762 157 0 41 chr11 1118465 1118783 -149664770 + AluJb SINE Alu 1 305 -7 2188 104 0 0 chr11 1118785 1119082 -149664471 + AluY SINE Alu 1 297 -14 2254 87 3 10 chr11 1119524 1119834 -149663719 + AluY SINE Alu 1 308 -3 576 280 134 8 chr11 1119916 1120231 -149663322 - MLT1G1 LTR MaLR -175 367 12 1849 151 3 10 chr11 1120341 1120632 -149662921 + AluJb SINE Alu 21 309 -3 296 283 42 17 chr11 1120889 1121009 -149662544 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 313 289 66 33 chr11 1121099 1121251 -149662302 - L1MC5 LINE L1 -45 7916 7760 859 175 0 0 chr11 1121252 1121395 -149662158 + FLAM_C SINE Alu 1 143 0 298 302 35 0 chr11 1122352 1122438 -149661115 + MIR3 SINE MIR 109 197 -11 279 176 29 20 chr11 1122801 1122874 -149660679 + MSTC LTR MaLR 7 81 -284 1513 173 47 20 chr11 1122875 1123176 -149660377 + AluJo SINE Alu 1 309 -3 1883 131 4 4 chr11 1123177 1123452 -149660101 + AluSx SINE Alu 1 275 -37 2159 112 3 0 chr11 1123623 1123918 -149659635 - AluSx SINE Alu -16 296 1 210 71 0 0 chr11 1125262 1125290 -149658263 + (CAGCC)n Simple_repeat Simple_repeat 1 28 0 235 278 0 0 chr11 1125388 1125442 -149658111 + MIR SINE MIR 96 149 -113 422 239 84 80 chr11 1125813 1126052 -149657501 - MLT1D LTR MaLR -260 245 6 212 0 36 0 chr11 1126206 1126234 -149657319 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1778 174 3 3 chr11 1126236 1126535 -149657018 - AluSx SINE Alu -5 307 9 297 211 44 22 chr11 1126903 1126993 -149656560 - L1MB3 LINE L1 -2 6181 6090 1216 201 48 0 chr11 1128173 1128446 -149655107 - L1MB3 LINE L1 -75 6108 5823 1355 94 4 3 chr11 1128446 1128691 -149654862 - AluSp SINE Alu -6 307 1 424 184 149 21 chr11 1128692 1128833 -149654720 - L1MB3 LINE L1 -342 5829 5671 1876 155 3 16 chr11 1132140 1132444 -149651109 - AluJo SINE Alu -12 300 1 318 295 74 20 chr11 1133059 1133208 -149650345 + L2 LINE L2 2848 3004 -309 195 350 36 44 chr11 1134866 1135003 -149648550 - MIR3 SINE MIR -71 137 2 235 208 94 62 chr11 1135104 1135200 -149648353 - MIR SINE MIR -133 129 31 308 381 14 36 chr11 1136445 1136584 -149646969 - L1MB3 LINE L1 -2206 5602 5467 29 0 0 0 chr11 1137890 1137919 -149645634 + AT_rich Low_complexity Low_complexity 1 29 0 1354 186 48 11 chr11 1137923 1138277 -149645276 + Charlie5 DNA MER1_type 2235 2601 -11 1200 306 101 38 chr11 1138280 1139772 -149643781 + L1ME LINE L1 113 1737 -4573 614 349 73 46 chr11 1139781 1140324 -149643229 + L1ME LINE L1 1789 3318 -2811 4502 206 49 39 chr11 1140366 1141795 -149641758 + L1ME LINE L1 3706 5148 -981 271 247 7 7 chr11 1141916 1142070 -149641483 + (TG)n Simple_repeat Simple_repeat 2 155 0 2321 51 27 10 chr11 1143915 1144209 -149639344 + AluY SINE Alu 1 299 -12 230 238 32 16 chr11 1144618 1144681 -149638872 - L2 LINE L2 0 3272 3209 182 234 0 94 chr11 1150916 1150980 -149632573 - MIR SINE MIR -117 145 88 201 246 108 15 chr11 1151223 1151288 -149632265 - MIR3 SINE MIR -27 181 111 689 321 11 0 chr11 1153326 1153513 -149630040 + MIR SINE MIR 46 234 -28 1070 72 0 7 chr11 1154382 1154534 -149629019 + AluY SINE Alu 149 299 -12 271 188 39 47 chr11 1155897 1156025 -149627528 + (GGGTG)n Simple_repeat Simple_repeat 3 129 0 2286 76 0 20 chr11 1158847 1159148 -149624405 + AluSc SINE Alu 1 295 -14 1918 183 40 0 chr11 1159823 1160146 -149623407 - MER1B DNA MER1_type 0 337 2 261 75 0 0 chr11 1162739 1162779 -149620774 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 22 0 0 0 chr11 1163077 1163099 -149620454 + GC_rich Low_complexity Low_complexity 1 22 0 236 217 0 0 chr11 1163341 1163387 -149620166 + MIR SINE MIR 107 152 -110 369 216 11 0 chr11 1163890 1163978 -149619575 - MER45A DNA AcHobo -21 157 69 267 217 17 0 chr11 1165862 1165922 -149617631 - MIR SINE MIR -62 146 86 1612 186 32 0 chr11 1166410 1166749 -149616804 + L1ME LINE L1 5251 5600 -549 1521 283 63 67 chr11 1166752 1167993 -149615560 + L1M4 LINE L1 2558 3793 -2353 436 228 31 6 chr11 1168982 1169137 -149614416 + MIR SINE MIR 61 219 -43 188 151 170 19 chr11 1169188 1169241 -149614312 - MIR3 SINE MIR -52 156 96 258 81 0 0 chr11 1178540 1178577 -149604976 + (TC)n Simple_repeat Simple_repeat 2 38 0 218 358 47 34 chr11 1181722 1181870 -149601683 + MIR3 SINE MIR 34 183 -25 221 287 11 23 chr11 1182581 1182668 -149600885 + G-rich Low_complexity Low_complexity 2 87 0 2891 161 24 39 chr11 1183297 1183795 -149599758 + MER39B LTR ERV1 1 490 -163 2510 36 3 7 chr11 1183795 1184104 -149599449 - AluY SINE Alu -3 308 1 2891 161 24 39 chr11 1184104 1184228 -149599325 + MER39B LTR ERV1 490 614 -39 346 329 105 44 chr11 1184955 1185299 -149598254 - L2 LINE L2 -93 3179 2815 245 329 37 0 chr11 1185472 1185554 -149597999 - L2 LINE L2 -5 3308 3224 260 296 348 12 chr11 1185651 1186474 -149597079 - L2 LINE L2 -524 2790 1692 372 241 25 0 chr11 1187929 1188008 -149595545 + MER81 DNA DNA 17 97 -17 234 255 0 0 chr11 1188306 1188353 -149595200 + (TG)n Simple_repeat Simple_repeat 1 47 0 1522 177 65 31 chr11 1188642 1188936 -149594617 - AluJo SINE Alu -8 304 1 1890 136 6 31 chr11 1189789 1190106 -149593447 + AluSx SINE Alu 1 309 -3 518 300 66 31 chr11 1190278 1190505 -149593048 + MIR SINE MIR 21 255 -7 2264 92 10 0 chr11 1190696 1190991 -149592562 + AluSg SINE Alu 1 298 -12 459 95 0 0 chr11 1191256 1191330 -149592223 - MIR SINE MIR -123 139 66 247 215 0 32 chr11 1191852 1191945 -149591608 + GA-rich Low_complexity Low_complexity 3 92 0 181 237 51 0 chr11 1192146 1192205 -149591348 - MIR SINE MIR -61 147 86 219 114 0 0 chr11 1192547 1192582 -149590971 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 380 250 0 0 chr11 1192665 1192749 -149590804 + MIR SINE MIR 68 151 -57 439 278 44 56 chr11 1194230 1194410 -149589143 + MIR SINE MIR 85 262 0 233 304 48 32 chr11 1195091 1195216 -149588337 + MIR SINE MIR 59 185 -77 1778 166 3 7 chr11 1195399 1195700 -149587853 - AluJb SINE Alu 0 312 13 245 298 75 6 chr11 1195956 1196117 -149587436 - MLT1J2 LTR MaLR -245 205 34 191 295 39 26 chr11 1196278 1196356 -149587197 - L3 LINE CR1 -220 1357 1279 306 73 0 0 chr11 1197628 1197669 -149585884 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 212 26 62 chr11 1198205 1198318 -149585235 + (CCGGG)n Simple_repeat Simple_repeat 2 110 0 260 185 0 0 chr11 1198646 1198700 -149584853 - L2 LINE L2 -265 3048 2995 225 363 26 0 chr11 1198838 1198951 -149584602 - L2 LINE L2 -670 2644 2529 191 355 26 0 chr11 1199061 1199137 -149584416 - L2 LINE L2 -953 2361 2284 211 243 27 40 chr11 1202292 1202366 -149581187 - MIR SINE MIR -116 92 20 208 244 0 0 chr11 1203482 1203527 -149580026 + (TG)n Simple_repeat Simple_repeat 1 45 0 1547 149 58 0 chr11 1206939 1207200 -149576353 - AluJb SINE Alu -20 292 17 350 256 87 23 chr11 1207280 1207452 -149576101 - MLT1K LTR MaLR -243 345 163 289 324 133 6 chr11 1207836 1208009 -149575544 + MIR SINE MIR 27 221 -41 1099 81 0 69 chr11 1209160 1209333 -149574220 + AluY SINE Alu 1 161 -150 256 198 10 10 chr11 1209348 1209444 -149574109 + (CA)n Simple_repeat Simple_repeat 2 97 0 239 333 21 0 chr11 1210842 1210938 -149572615 + MIR SINE MIR 84 181 -81 1771 145 35 10 chr11 1211076 1211365 -149572188 - AluJo SINE Alu -16 296 1 235 302 93 0 chr11 1212564 1212693 -149570860 + LTR48 LTR ERV1 579 719 -68 191 356 11 11 chr11 1214706 1214793 -149568760 + L2 LINE L2 2965 3051 -221 182 236 91 0 chr11 1216876 1216931 -149566622 - L2 LINE L2 -1375 1939 1880 259 121 45 15 chr11 1217221 1217287 -149566266 + (CCCGG)n Simple_repeat Simple_repeat 3 70 0 30 27 0 0 chr11 1217326 1217363 -149566190 + GC_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr11 1217678 1217722 -149565831 + GC_rich Low_complexity Low_complexity 1 44 0 43 20 0 0 chr11 1217812 1217862 -149565691 + GC_rich Low_complexity Low_complexity 1 50 0 376 354 112 29 chr11 1218360 1218451 -149565102 + HAL1 LINE L1 1004 1086 -1421 1498 177 75 17 chr11 1218451 1218745 -149564808 + AluJb SINE Alu 2 312 0 376 354 112 29 chr11 1218745 1218930 -149564623 + HAL1 LINE L1 1086 1303 -1204 398 318 41 72 chr11 1220097 1220181 -149563372 + L1ME4a LINE L1 1040 1125 -4996 764 186 0 0 chr11 1220181 1220305 -149563248 + FLAM_A SINE Alu 1 124 -9 398 318 41 72 chr11 1220305 1220321 -149563232 + L1ME4a LINE L1 1125 1140 -4981 1758 140 0 29 chr11 1220321 1220599 -149562954 + AluJo SINE Alu 19 288 -24 398 318 41 72 chr11 1220599 1220821 -149562732 + L1ME4a LINE L1 1140 6119 -2 196 354 13 0 chr11 1221257 1221336 -149562217 - MIR SINE MIR -84 124 45 202 259 37 0 chr11 1221445 1221499 -149562054 + GA-rich Low_complexity Low_complexity 1 56 0 1976 176 43 5 chr11 1221949 1222325 -149561228 + MLT1B LTR MaLR 1 390 0 214 200 0 18 chr11 1222983 1223038 -149560515 + A-rich Low_complexity Low_complexity 2 55 0 258 105 0 0 chr11 1223598 1223636 -149559917 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 218 265 15 0 chr11 1224565 1224633 -149558920 + (CGGA)n Simple_repeat Simple_repeat 2 70 0 2141 102 0 57 chr11 1227219 1227551 -149556002 - AluSq SINE Alu 0 313 1 251 170 21 0 chr11 1227742 1227789 -149555764 - MLT1A1 LTR MaLR 0 457 410 2123 109 3 0 chr11 1227790 1228116 -149555437 - AluSp SINE Alu 0 327 1 582 91 0 0 chr11 1228118 1228195 -149555358 - AluSp SINE Alu -181 132 56 674 150 33 0 chr11 1228196 1228316 -149555237 - MLT1A1 LTR MaLR -38 327 204 247 279 0 15 chr11 1230432 1230500 -149553053 + G-rich Low_complexity Low_complexity 2 68 0 411 325 90 8 chr11 1230557 1230791 -149552762 - L2 LINE L2 -254 3059 2807 262 0 53 0 chr11 1230927 1230965 -149552588 + (TG)n Simple_repeat Simple_repeat 2 41 0 276 152 63 13 chr11 1230989 1231147 -149552406 + (TG)n Simple_repeat Simple_repeat 2 167 0 224 295 71 36 chr11 1231492 1231604 -149551949 - MIR SINE MIR -62 146 31 321 290 73 17 chr11 1232150 1232297 -149551256 + MIR SINE MIR 5 148 -62 1046 261 46 4 chr11 1232923 1233256 -149550297 - MLT1A2 LTR MaLR -23 444 1 320 267 103 0 chr11 1235844 1235960 -149547593 - MIR SINE MIR -120 142 15 226 333 0 0 chr11 1236360 1236417 -149547136 - MIR SINE MIR -93 169 113 821 251 5 5 chr11 1237051 1237250 -149546303 + MER58A DNA MER1_type 26 224 0 407 324 91 16 chr11 1237334 1237587 -149545966 + L1ME LINE L1 5539 5810 -311 201 132 0 0 chr11 1237852 1237890 -149545663 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 214 319 0 30 chr11 1239214 1239349 -149544204 + C-rich Low_complexity Low_complexity 2 132 0 208 410 35 0 chr11 1239480 1239624 -149543929 + MIR SINE MIR 91 239 -23 207 69 0 0 chr11 1240137 1240166 -149543387 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 530 229 6 0 chr11 1240419 1240598 -149542955 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 228 67 0 0 chr11 1240599 1240629 -149542924 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 482 144 19 0 chr11 1240759 1240863 -149542690 - HAL1b LINE L1 -278 1070 965 417 352 20 52 chr11 1240978 1241228 -149542325 - HAL1b LINE L1 -534 814 573 1128 341 85 1 chr11 1241423 1242167 -149541386 - HAL1 LINE L1 -725 1782 977 322 188 35 0 chr11 1243819 1243904 -149539649 + CT-rich Low_complexity Low_complexity 4 91 0 325 299 75 21 chr11 1244140 1244381 -149539172 + L2 LINE L2 2634 2887 -427 190 372 35 26 chr11 1244585 1244698 -149538855 + L2 LINE L2 3180 3293 -20 254 235 10 0 chr11 1245435 1245537 -149538016 + (TGGA)n Simple_repeat Simple_repeat 2 104 0 698 208 12 0 chr11 1245553 1245986 -149537567 + (TGGA)n Simple_repeat Simple_repeat 1 438 0 410 233 17 6 chr11 1245997 1246173 -149537380 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 378 151 0 0 chr11 1246162 1246235 -149537318 + GA-rich Low_complexity Low_complexity 1 73 0 * 192 333 200 0 chr11 1246600 1246705 -149536848 - MIR SINE MIR -2 260 135 271 253 12 0 chr11 1248229 1248312 -149535241 + L2 LINE L2 2892 2975 -339 351 167 51 0 chr11 1249459 1249537 -149534016 - MER103 DNA DNA -67 99 18 234 62 0 0 chr11 1250652 1250684 -149532869 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 233 316 63 0 chr11 1250689 1250784 -149532769 - L2 LINE L2 -36 3236 3136 366 333 165 12 chr11 1251035 1251290 -149532263 - L1 LINE L1 -2310 3836 3543 308 311 144 16 chr11 1251346 1251976 -149531577 - L1 LINE L1 -2665 3481 2771 264 30 0 0 chr11 1252117 1252150 -149531403 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1514 194 110 22 chr11 1253434 1253878 -149529675 + MLT1D LTR MaLR 23 505 0 205 309 119 99 chr11 1253885 1254287 -149529266 - L2 LINE L2 -46 3226 2817 352 288 59 13 chr11 1254402 1254638 -149528915 + HAL1 LINE L1 1017 1263 -1244 712 245 142 78 chr11 1254649 1255200 -149528353 + HAL1 LINE L1 1337 1922 -585 281 233 0 22 chr11 1255626 1255716 -149527837 + (CA)n Simple_repeat Simple_repeat 1 88 0 222 334 178 28 chr11 1255747 1256286 -149527267 - L2 LINE L2 -623 2691 2072 267 289 198 0 chr11 1257124 1257245 -149526308 - L2 LINE L2 -9 3263 3119 184 268 0 0 chr11 1258309 1258350 -149525203 - L2 LINE L2 -31 3241 3201 571 340 41 16 chr11 1258872 1259187 -149524366 - MLT1J LTR MaLR -148 363 41 222 384 138 15 chr11 1259249 1259780 -149523773 - L2 LINE L2 -769 2545 1950 406 275 42 75 chr11 1259853 1260093 -149523460 + HAL1 LINE L1 6 237 -2270 406 315 36 27 chr11 1260142 1260364 -149523189 + HAL1 LINE L1 391 614 -1893 2326 240 77 46 chr11 1260371 1261365 -149522188 + HAL1 LINE L1 1392 2415 -92 506 69 0 83 chr11 1261490 1261635 -149521918 + (GGA)n Simple_repeat Simple_repeat 1 133 0 213 261 0 0 chr11 1262403 1262449 -149521104 + MIR3 SINE MIR 109 154 -54 203 447 11 0 chr11 1262540 1262719 -149520834 + MIR SINE MIR 36 216 -46 194 336 58 73 chr11 1262974 1263111 -149520442 + L2 LINE L2 3022 3156 -116 203 210 8 40 chr11 1263156 1263280 -149520273 + C-rich Low_complexity Low_complexity 1 120 0 251 210 7 91 chr11 1265669 1265812 -149517741 + (ACGTG)n Simple_repeat Simple_repeat 5 135 0 321 26 0 0 chr11 1266950 1266988 -149516565 + (CA)n Simple_repeat Simple_repeat 1 38 0 266 299 159 75 chr11 1267070 1267535 -149516018 - L2 LINE L2 -6 3307 2804 217 259 103 52 chr11 1267700 1267874 -149515679 - L2 LINE L2 -2678 636 454 205 299 73 15 chr11 1269214 1269351 -149514202 - L2 LINE L2 -213 3059 2915 350 232 6 39 chr11 1320357 1320695 -149462858 + G-rich Low_complexity Low_complexity 1 326 0 206 337 6 33 chr11 1320704 1320885 -149462668 + (GGGTG)n Simple_repeat Simple_repeat 4 179 0 * 370 333 0 32 chr11 1320759 1320945 -149462608 + G-rich Low_complexity Low_complexity 1 180 0 2005 123 10 3 chr11 1321373 1321665 -149461888 - AluSq SINE Alu -19 294 1 265 232 66 60 chr11 1321713 1321864 -149461689 - L1MC5 LINE L1 -933 7028 6877 387 0 0 0 chr11 1322053 1322096 -149461457 + (CA)n Simple_repeat Simple_repeat 2 44 0 307 266 188 0 chr11 1322795 1322923 -149460630 + L1ME4a LINE L1 5967 6118 -3 486 343 26 22 chr11 1323115 1323383 -149460170 - L1MC4 LINE L1 -16 8026 7758 2635 102 5 30 chr11 1323496 1323869 -149459684 + THE1B LTR MaLR 1 364 0 4225 122 29 3 chr11 1323869 1324638 -149458915 + THE1B-int LTR MaLR 1 789 -791 2630 290 22 16 chr11 1325631 1326103 -149457450 + L1MC4a LINE L1 6477 6944 -864 2142 122 6 3 chr11 1326103 1326414 -149457139 + AluSx SINE Alu 1 312 0 2630 290 22 16 chr11 1326414 1327010 -149456543 + L1MC4a LINE L1 6944 7520 -288 280 264 27 0 chr11 1328060 1328149 -149455404 + MIR3 SINE MIR 63 157 -51 243 246 35 0 chr11 1328786 1328843 -149454710 + MIR SINE MIR 64 122 -86 689 148 9 0 chr11 1329089 1329197 -149454356 + FRAM SINE Alu 62 170 -6 34 65 0 0 chr11 1329969 1330031 -149453522 + AT_rich Low_complexity Low_complexity 1 62 0 186 43 0 0 chr11 1330729 1330752 -149452801 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 401 353 107 43 chr11 1331744 1332212 -149451341 - HAL1 LINE L1 -1206 1301 880 245 346 0 32 chr11 1332407 1332592 -149450961 + GA-rich Low_complexity Low_complexity 1 179 0 379 335 12 12 chr11 1333820 1333990 -149449563 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 225 65 0 0 chr11 1335204 1335235 -149448318 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 856 298 79 74 chr11 1336795 1337023 -149446530 - L1MC5 LINE L1 -397 7564 7339 231 61 0 0 chr11 1337023 1337056 -149446497 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 856 298 79 74 chr11 1337056 1337818 -149445735 - L1MC5 LINE L1 -622 7339 6555 1412 241 33 9 chr11 1337895 1338322 -149445231 - L1PA16 LINE L1 -5 6161 5725 1715 189 5 28 chr11 1338606 1338961 -149444592 + L1P LINE L1 4978 5323 -823 2081 118 7 0 chr11 1338961 1339249 -149444304 + AluSc SINE Alu 1 290 -19 1715 189 5 28 chr11 1339249 1339328 -149444225 + L1P LINE L1 5323 5402 -744 1250 132 21 13 chr11 1339328 1339563 -149443990 + THE1A LTR MaLR 1 237 -118 676 66 0 0 chr11 1339563 1339654 -149443899 + AluSp/q SINE Alu 215 305 -8 953 70 0 0 chr11 1339654 1339782 -149443771 + THE1A LTR MaLR 228 355 0 4757 94 35 0 chr11 1339783 1340506 -149443047 + THE1A-int LTR MaLR 3 750 -830 1342 126 13 4 chr11 1340506 1340736 -149442817 - THE1A LTR MaLR -123 232 1 3303 79 2 4 chr11 1340736 1341205 -149442348 - THE1A-int LTR MaLR 0 1580 1113 415 113 16 0 chr11 1341208 1341270 -149442283 - AluJb SINE Alu -83 229 167 2062 116 0 38 chr11 1342482 1342802 -149440751 + AluSx SINE Alu 1 308 -4 1213 215 95 31 chr11 1342860 1343170 -149440383 - MLT1C LTR MaLR -52 415 74 2037 147 0 3 chr11 1343170 1343483 -149440070 + AluJb SINE Alu 1 312 0 1213 215 95 31 chr11 1343483 1343562 -149439991 - MLT1C LTR MaLR -393 74 1 1342 174 89 0 chr11 1344096 1344367 -149439186 - MLT1C LTR MaLR -2 430 170 26 0 0 27 chr11 1344370 1344383 -149439170 + AT_rich Low_complexity Low_complexity 1 13 -23 2172 84 7 0 chr11 1344383 1344670 -149438883 + AluSp SINE Alu 1 289 -24 26 0 0 27 chr11 1344670 1344693 -149438860 + AT_rich Low_complexity Low_complexity 13 36 0 204 40 0 0 chr11 1344696 1344721 -149438832 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 835 175 7 13 chr11 1344723 1344877 -149438676 - FRAM SINE Alu -30 146 1 811 118 77 29 chr11 1344877 1345047 -149438506 - MLT1C LTR MaLR -289 178 1 850 158 0 0 chr11 1345251 1345384 -149438169 - AluSq/x SINE Alu -180 133 1 2367 90 0 0 chr11 1345868 1346178 -149437375 - AluSx SINE Alu -2 310 1 979 188 0 0 chr11 1346229 1346399 -149437154 - FRAM SINE Alu -10 166 1 290 288 39 10 chr11 1348480 1348657 -149434896 + MIR SINE MIR 6 241 -21 2012 55 76 7 chr11 1349017 1349292 -149434261 + AluY SINE Alu 1 294 -17 708 290 43 24 chr11 1349628 1349883 -149433670 - MIR SINE MIR -1 261 2 341 277 36 0 chr11 1350714 1350826 -149432727 - MER5A DNA MER1_type -38 151 36 2253 72 3 0 chr11 1350926 1351254 -149432299 + AluSx SINE Alu 1 312 0 33 25 0 0 chr11 1351933 1351973 -149431580 + AT_rich Low_complexity Low_complexity 1 40 0 210 321 94 19 chr11 1352088 1352194 -149431359 - MIR SINE MIR -25 237 124 252 276 115 0 chr11 1352346 1352433 -149431120 - L1ME4a LINE L1 -3 6118 6022 457 267 15 0 chr11 1355042 1355177 -149428376 - MER67B LTR ERV1 0 661 525 978 176 0 0 chr11 1355177 1355373 -149428180 + FRAM SINE Alu 1 176 0 516 280 131 27 chr11 1355373 1355790 -149427763 - MER67B LTR ERV1 -128 533 34 1060 174 0 0 chr11 1355938 1356099 -149427454 + U1 snRNA snRNA 1 161 -4 617 209 199 31 chr11 1356136 1356332 -149427221 - L1MB5 LINE L1 -18 6156 5928 2496 57 0 0 chr11 1357163 1357464 -149426089 - AluY SINE Alu -10 301 1 2177 75 0 0 chr11 1358896 1359177 -149424376 + AluY SINE Alu 1 281 -30 1896 123 50 0 chr11 1359765 1360042 -149423511 + AluSg SINE Alu 1 291 -19 696 150 0 9 chr11 1361923 1362036 -149421517 + AluY SINE Alu 184 295 -16 379 263 177 7 chr11 1362970 1363175 -149420378 + MIR SINE MIR 23 262 0 2247 161 68 12 chr11 1364078 1364487 -149419066 - Tigger2a DNA MER2_type -1 433 2 413 245 93 16 chr11 1365966 1366134 -149417419 - MIR SINE MIR -37 171 8 382 102 0 0 chr11 1367449 1367508 -149416045 - L1MB2 LINE L1 0 6171 6113 2405 257 45 14 chr11 1367532 1368145 -149415408 - L1MB5 LINE L1 -282 5901 5308 932 278 141 43 chr11 1368145 1368655 -149414898 - MER68 LTR ERV1 -2 560 1 2405 257 45 14 chr11 1368655 1368680 -149414873 - L1MB5 LINE L1 -875 5308 5538 1781 176 0 7 chr11 1368680 1368981 -149414572 + AluJo SINE Alu 1 299 -13 2405 257 45 14 chr11 1368981 1369177 -149414376 - L1MB5 LINE L1 -644 5539 5351 2008 129 88 16 chr11 1369268 1369632 -149413921 + MSTC LTR MaLR 1 390 -38 2044 114 0 20 chr11 1369632 1369931 -149413622 + AluSc SINE Alu 1 293 -16 2269 93 7 0 chr11 1369945 1370255 -149413298 + AluSx SINE Alu 1 312 0 201 200 20 0 chr11 1370259 1370309 -149413244 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 801 193 0 0 chr11 1370381 1370516 -149413037 + AluJo SINE Alu 1 135 -177 26 0 0 0 chr11 1370516 1370542 -149413011 + AT_rich Low_complexity Low_complexity 1 26 0 841 305 98 82 chr11 1370671 1371399 -149412154 - L1MEd LINE L1 -2919 3210 2472 1802 181 75 14 chr11 1371405 1371820 -149411733 - L1MC1 LINE L1 -5 6328 5889 945 221 4 65 chr11 1371862 1372093 -149411460 - MER21B LTR ERV1 -72 791 575 1987 112 0 0 chr11 1372094 1372371 -149411182 + AluSc SINE Alu 1 277 -32 546 91 0 0 chr11 1372371 1372448 -149411105 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 2652 169 27 4 chr11 1372453 1372932 -149410621 - L1MCa LINE L1 -5930 496 7 410 323 65 46 chr11 1373098 1373885 -149409668 - L1MEd LINE L1 -4845 1465 642 8751 41 2 1 chr11 1375981 1376987 -149406566 - LTR13 LTR ERVK 0 1007 1 2540 174 36 11 chr11 1377947 1378423 -149405130 - L1MA4 LINE L1 -3 6297 5810 2192 113 0 0 chr11 1378910 1379211 -149404342 + AluSx SINE Alu 6 306 -6 1971 147 0 0 chr11 1379685 1379984 -149403569 + AluJo SINE Alu 1 299 -13 277 295 124 30 chr11 1380012 1380243 -149403310 + L1M4 LINE L1 2820 3028 -3118 2360 80 0 0 chr11 1380243 1380543 -149403010 + AluSg SINE Alu 2 301 -9 277 295 124 30 chr11 1380543 1380748 -149402805 + L1M4 LINE L1 3028 3297 -2849 1556 176 11 0 chr11 1380751 1381012 -149402541 + AluJb SINE Alu 13 276 -36 243 103 0 0 chr11 1381012 1381051 -149402502 + (TATG)n Simple_repeat Simple_repeat 4 42 0 1583 238 65 19 chr11 1381865 1382394 -149401159 - LTR26E LTR ERV1 0 622 1 239 238 119 16 chr11 1382728 1382854 -149400699 + L1ME4a LINE L1 5974 6112 -9 247 344 41 16 chr11 1384385 1384507 -149399046 + MIR3 SINE MIR 77 201 -7 2081 87 3 48 chr11 1384709 1385019 -149398534 - AluSg SINE Alu -14 296 1 215 299 39 13 chr11 1385462 1385539 -149398014 + MIR SINE MIR 18 96 -166 2303 82 3 3 chr11 1386766 1387072 -149396481 - AluSp SINE Alu -7 306 1 1429 197 24 7 chr11 1387521 1387816 -149395737 + AluJb SINE Alu 1 300 -12 2331 84 0 10 chr11 1387911 1388221 -149395332 + AluY SINE Alu 2 308 -3 270 176 0 0 chr11 1390463 1390514 -149393039 - AluSg SINE Alu -1 307 257 1762 101 4 19 chr11 1390607 1390864 -149392689 - AluSg SINE Alu -57 253 1 2222 77 11 0 chr11 1390987 1391272 -149392281 + AluSp SINE Alu 7 294 -19 2048 99 0 0 chr11 1391281 1391554 -149391999 + AluSc SINE Alu 37 309 0 366 294 52 0 chr11 1392298 1392451 -149391102 - MER20 DNA MER1_type -2 217 57 2232 45 0 28 chr11 1392800 1393108 -149390445 - AluY SINE Alu 0 300 1 180 382 67 0 chr11 1393291 1393380 -149390173 - MIR SINE MIR -10 252 158 1509 214 38 3 chr11 1394857 1395226 -149388327 - L1MB3 LINE L1 -43 6140 5759 2276 111 0 0 chr11 1395796 1396093 -149387460 - AluSc SINE Alu -12 297 1 2174 103 43 10 chr11 1397953 1398255 -149385298 - AluSx SINE Alu 0 312 1 877 180 0 0 chr11 1398265 1398426 -149385127 - L1MA4 LINE L1 -6 6294 6134 1888 119 83 4 chr11 1398522 1398799 -149384754 + AluSx SINE Alu 2 300 -12 216 0 0 0 chr11 1398910 1398934 -149384619 + (CAGGG)n Simple_repeat Simple_repeat 3 26 0 2401 92 0 7 chr11 1399301 1399604 -149383949 - AluSg SINE Alu -9 301 1 289 289 67 19 chr11 1400949 1401053 -149382500 + L2 LINE L2 2281 2389 -925 366 299 98 40 chr11 1401071 1401245 -149382308 + L2 LINE L2 2292 2475 -839 255 296 49 43 chr11 1404268 1404430 -149379123 + L1MD2 LINE L1 5683 5845 -1963 25 0 0 0 chr11 1404453 1404478 -149379075 + AT_rich Low_complexity Low_complexity 1 25 0 446 193 44 9 chr11 1404520 1404637 -149378916 - MLT1G1 LTR MaLR 0 595 429 425 296 29 39 chr11 1404738 1404944 -149378609 - MLT1G1 LTR MaLR -331 259 56 2162 94 0 0 chr11 1405219 1405485 -149378068 - AluSx SINE Alu -46 266 1 336 301 147 19 chr11 1405506 1405825 -149377728 + L1MC4a LINE L1 6504 6863 -945 599 270 60 27 chr11 1405835 1406201 -149377352 + L1MD2 LINE L1 5835 6267 -92 301 195 5 0 chr11 1406231 1406291 -149377262 + L1MC4 LINE L1 6856 7010 -1032 1256 173 13 9 chr11 1406292 1406518 -149377035 + AluJo SINE Alu 85 311 -1 312 266 71 48 chr11 1406629 1406841 -149376712 + L1MC4 LINE L1 7032 7207 -754 239 236 28 28 chr11 1407070 1407142 -149376411 - MER5A DNA MER1_type -89 100 29 412 322 78 43 chr11 1407158 1407429 -149376124 + L1MC5 LINE L1 7322 7609 -352 2384 71 30 7 chr11 1407429 1407726 -149375827 + AluSp SINE Alu 1 304 -9 412 322 78 43 chr11 1407726 1407799 -149375754 + L1MC5 LINE L1 7609 7678 -283 21 0 0 0 chr11 1408625 1408646 -149374907 + AT_rich Low_complexity Low_complexity 1 21 0 206 284 90 0 chr11 1409156 1409223 -149374330 - L2 LINE L2 -30 3242 3170 206 256 0 0 chr11 1409442 1409485 -149374068 + MER5B DNA MER1_type 1 43 -135 1530 161 12 24 chr11 1409486 1409740 -149373813 - AluJo SINE Alu -19 293 43 229 175 0 0 chr11 1409741 1409781 -149373772 - MLT1C LTR MaLR -354 113 74 2564 39 3 10 chr11 1410258 1410564 -149372989 - AluY SINE Alu -7 304 1 1237 177 85 35 chr11 1410564 1410847 -149372706 - AluJb SINE Alu -4 298 2 609 139 0 0 chr11 1410852 1410938 -149372615 - FLAM_A SINE Alu -17 125 40 40 49 0 0 chr11 1412209 1412270 -149371283 + GC_rich Low_complexity Low_complexity 1 61 0 216 200 0 91 chr11 1412285 1412395 -149371158 + G-rich Low_complexity Low_complexity 3 102 0 513 256 34 59 chr11 1413576 1413775 -149369778 - MIR SINE MIR -28 234 37 375 272 258 14 chr11 1415893 1416110 -149367443 - L2 LINE L2 -18 3295 3026 305 309 32 16 chr11 1416504 1416627 -149366926 - L2 LINE L2 -9 3304 3180 2415 79 3 7 chr11 1416642 1416945 -149366608 - AluSx SINE Alu -10 302 1 603 177 0 71 chr11 1416972 1417113 -149366440 + FLAM_C SINE Alu 1 131 -2 2196 87 30 33 chr11 1417498 1417798 -149365755 + AluSq SINE Alu 3 301 -12 2271 129 0 0 chr11 1418016 1418327 -149365226 - AluSx SINE Alu -1 311 1 827 161 111 5 chr11 1418717 1418924 -149364629 - L1MA8 LINE L1 -2 6289 6057 2015 132 87 3 chr11 1419178 1419511 -149364042 + MER46B DNA MER2_type 1 236 0 192 301 75 32 chr11 1419620 1419713 -149363840 - MIR SINE MIR -61 201 105 2398 86 7 0 chr11 1419823 1420125 -149363428 - AluSp SINE Alu -9 304 1 908 178 0 46 chr11 1420226 1420400 -149363153 - FRAM SINE Alu -10 166 1 1470 134 20 35 chr11 1420404 1420658 -149362895 - AluSx SINE Alu -6 306 57 814 198 0 32 chr11 1420896 1421053 -149362500 + FRAM SINE Alu 1 152 -24 238 209 209 0 chr11 1421174 1421241 -149362312 - L2 LINE L2 -1 3312 3232 2240 106 3 0 chr11 1421369 1421671 -149361882 - AluSg SINE Alu -7 303 1 317 261 81 27 chr11 1421779 1421890 -149361663 + MIR SINE MIR 74 190 -72 236 189 151 0 chr11 1422157 1422210 -149361343 + L1ME LINE L1 5576 5636 -485 2326 85 7 0 chr11 1422570 1422865 -149360688 - AluSp SINE Alu -16 297 1 960 115 0 55 chr11 1422971 1423136 -149360417 - FRAM SINE Alu 0 176 21 1816 152 7 29 chr11 1423160 1423470 -149360083 - AluSx SINE Alu -6 306 4 1838 148 25 3 chr11 1423934 1424218 -149359335 + AluJo SINE Alu 1 290 -22 192 40 0 0 chr11 1424621 1424646 -149358907 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2204 96 4 0 chr11 1424648 1424929 -149358624 - AluSq SINE Alu -31 282 1 720 218 84 6 chr11 1424936 1425115 -149358438 - L1ME2 LINE L1 0 6164 5972 323 250 68 104 chr11 1426299 1426402 -149357151 - L1MC5 LINE L1 -44 7917 7823 710 214 8 0 chr11 1426402 1426533 -149357020 - FLAM_A SINE Alu -1 132 1 323 250 68 104 chr11 1426533 1426621 -149356932 - L1MC5 LINE L1 -138 7823 7733 503 304 154 27 chr11 1426730 1427244 -149356309 - L1MC4 LINE L1 -251 7791 7213 23 0 0 0 chr11 1428121 1428144 -149355409 + AT_rich Low_complexity Low_complexity 1 23 0 572 237 18 0 chr11 1428855 1428969 -149354584 - FLAM_A SINE Alu -17 116 1 919 199 23 0 chr11 1429094 1429265 -149354288 - AluJo SINE Alu -18 294 120 1890 105 81 48 chr11 1429396 1429554 -149353999 - AluSx SINE Alu -7 305 154 568 130 0 0 chr11 1429554 1429646 -149353907 - L1PA8 LINE L1 -5 6167 6076 212 0 36 0 chr11 1429652 1429680 -149353873 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1890 105 81 48 chr11 1429680 1429809 -149353744 - AluSx SINE Alu -162 150 1 902 35 18 0 chr11 1430177 1430290 -149353263 + L1PA4 LINE L1 6041 6155 0 1801 174 3 0 chr11 1430355 1430642 -149352911 + AluJb SINE Alu 1 288 -24 1846 156 17 13 chr11 1431432 1431733 -149351820 - AluJo SINE Alu -10 302 1 246 233 194 61 chr11 1431736 1432081 -149351472 - L1ME2 LINE L1 -469 5652 5256 21 0 0 0 chr11 1432096 1432117 -149351436 + AT_rich Low_complexity Low_complexity 1 21 0 1513 210 93 0 chr11 1432347 1432681 -149350872 - MER47A DNA MER2_type 0 366 2 1791 150 61 10 chr11 1435147 1435440 -149348113 + AluJb SINE Alu 1 308 -4 189 206 0 0 chr11 1436091 1436125 -149347428 + MER5B DNA MER1_type 20 53 -125 2513 57 6 22 chr11 1436779 1437095 -149346458 - AluY SINE Alu 0 311 1 638 247 97 0 chr11 1437149 1437303 -149346250 - FAM SINE Alu -6 169 1 1314 171 122 49 chr11 1437874 1438259 -149345294 + L1MA5 LINE L1 5883 6295 -5 2224 58 68 4 chr11 1438608 1438886 -149344667 + AluY SINE Alu 1 296 -15 1422 184 141 3 chr11 1438915 1439220 -149344333 + MER7A DNA MER2_type 1 345 -1 308 319 28 14 chr11 1441263 1441309 -149342244 - L1MCa LINE L1 -4049 2377 2333 2599 78 0 0 chr11 1441309 1441618 -149341935 - AluSc SINE Alu 0 309 1 308 319 28 14 chr11 1441618 1441715 -149341838 - L1MCa LINE L1 -4093 2333 2232 313 308 8 53 chr11 1442183 1442316 -149341237 - L1ME LINE L1 -399 5722 5596 238 158 0 53 chr11 1442329 1442386 -149341167 - AluSp SINE Alu -132 171 118 927 128 0 0 chr11 1442606 1442739 -149340814 + FLAM_C SINE Alu 1 133 0 451 300 137 13 chr11 1443346 1443573 -149339980 - MIR SINE MIR -3 259 5 276 302 39 34 chr11 1443594 1443773 -149339780 - L1ME LINE L1 -386 5735 5556 25 0 0 0 chr11 1446683 1446708 -149336845 + AT_rich Low_complexity Low_complexity 1 25 0 296 254 16 49 chr11 1447366 1447488 -149336065 + L1MB8 LINE L1 6055 6172 -6 1307 178 91 56 chr11 1448787 1448934 -149334619 + AluJo SINE Alu 1 141 -161 1870 137 10 33 chr11 1448934 1449241 -149334312 + AluSx SINE Alu 1 300 -12 1307 178 91 56 chr11 1449241 1449379 -149334174 + AluJo SINE Alu 141 296 -6 729 205 119 11 chr11 1450916 1451101 -149332452 + MER3 DNA MER1_type 1 205 -4 345 296 271 0 chr11 1451276 1451475 -149332078 + MIR SINE MIR 2 254 -8 343 318 77 51 chr11 1452814 1453009 -149330544 + L1ME LINE L1 5582 5781 -340 292 197 314 0 chr11 1457186 1457323 -149326230 - MER46A DNA MER2_type -56 180 1 335 250 23 0 chr11 1462031 1462119 -149321434 + L1ME2 LINE L1 6066 6155 -9 2173 108 3 0 chr11 1462130 1462425 -149321128 - AluSx SINE Alu -16 296 1 210 71 0 0 chr11 1463769 1463797 -149319756 + (CAGCC)n Simple_repeat Simple_repeat 1 28 0 235 278 0 0 chr11 1463895 1463949 -149319604 + MIR SINE MIR 96 149 -113 429 232 84 80 chr11 1464320 1464557 -149318996 - MLT1D LTR MaLR -260 245 8 212 0 36 0 chr11 1464713 1464741 -149318812 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1792 171 3 3 chr11 1464743 1465042 -149318511 - AluSx SINE Alu -5 307 9 297 211 44 22 chr11 1465411 1465501 -149318052 - L1MB3 LINE L1 -2 6181 6090 1229 202 47 0 chr11 1467070 1467347 -149316206 - L1MB3 LINE L1 -75 6108 5819 2174 92 0 78 chr11 1467347 1467682 -149315871 - AluSq SINE Alu -3 310 2 2221 64 43 0 chr11 1467756 1468037 -149315516 - AluY SINE Alu -16 295 3 668 204 0 29 chr11 1468047 1468184 -149315369 - FLAM_C SINE Alu 0 133 1 200 322 25 34 chr11 1468203 1468321 -149315232 + MER5A DNA MER1_type 46 162 -27 1820 144 0 20 chr11 1468774 1469072 -149314481 - AluJo SINE Alu -20 292 1 267 217 17 0 chr11 1470738 1470798 -149312755 + MIR SINE MIR 86 146 -62 369 216 11 0 chr11 1472682 1472770 -149310783 + MER45A DNA AcHobo 69 157 -21 236 217 0 0 chr11 1473273 1473319 -149310234 - MIR SINE MIR -110 152 107 261 75 0 0 chr11 1473881 1473921 -149309632 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 1918 183 40 0 chr11 1476514 1476837 -149306716 + MER1B DNA MER1_type 2 337 0 2286 76 0 20 chr11 1477511 1477812 -149305741 - AluSc SINE Alu -14 295 1 281 156 47 55 chr11 1480574 1480702 -149302851 + (CACCC)n Simple_repeat Simple_repeat 3 129 0 2349 48 0 32 chr11 1482022 1482332 -149301221 - AluY SINE Alu -11 300 1 289 324 133 6 chr11 1483485 1483658 -149299895 - MIR SINE MIR -41 221 27 350 256 87 23 chr11 1484042 1484214 -149299339 + MLT1K LTR MaLR 163 345 -243 1538 150 58 0 chr11 1484294 1484554 -149298999 + AluJb SINE Alu 17 291 -21 208 244 0 0 chr11 1487966 1488011 -149295542 + (CA)n Simple_repeat Simple_repeat 1 45 0 211 243 27 40 chr11 1489128 1489202 -149294351 + MIR SINE MIR 20 92 -116 209 348 211 3 chr11 1492355 1492654 -149290899 + L2 LINE L2 2284 2644 -670 1464 205 166 27 chr11 1495631 1496041 -149287512 + MLT1C LTR MaLR 1 467 0 6057 45 6 0 chr11 1496396 1497212 -149286341 - L1PA6 LINE L1 0 6154 5334 187 223 97 39 chr11 1497248 1497351 -149286202 + L2 LINE L2 1518 1626 -1688 1610 53 18 0 chr11 1497613 1497840 -149285713 + L1PA5 LINE L1 5671 5901 -253 303 251 228 40 chr11 1497929 1498355 -149285198 + L2 LINE L2 2074 2579 -735 292 236 100 18 chr11 1498683 1498793 -149284760 - MIR SINE MIR -27 235 117 342 254 8 31 chr11 1501301 1501431 -149282122 + G-rich Low_complexity Low_complexity 1 127 0 2903 159 24 39 chr11 1502060 1502558 -149280995 + MER39B LTR ERV1 1 490 -163 2519 35 3 7 chr11 1502558 1502868 -149280685 - AluY SINE Alu -2 309 1 2903 159 24 39 chr11 1502868 1502992 -149280561 + MER39B LTR ERV1 490 614 -39 363 326 105 44 chr11 1503719 1504063 -149279490 - L2 LINE L2 -93 3179 2815 245 329 37 0 chr11 1504236 1504318 -149279235 - L2 LINE L2 -5 3308 3224 254 300 348 12 chr11 1504415 1505238 -149278315 - L2 LINE L2 -524 2790 1692 372 241 25 0 chr11 1506694 1506773 -149276780 + MER81 DNA DNA 17 97 -17 234 255 0 0 chr11 1507071 1507118 -149276435 + (TG)n Simple_repeat Simple_repeat 1 47 0 1522 177 65 31 chr11 1507407 1507701 -149275852 - AluJo SINE Alu -8 304 1 1858 142 6 31 chr11 1508555 1508872 -149274681 + AluSx SINE Alu 1 309 -3 521 308 66 31 chr11 1509044 1509271 -149274282 + MIR SINE MIR 21 255 -7 2263 92 10 0 chr11 1509462 1509757 -149273796 + AluSg SINE Alu 1 298 -12 459 95 0 0 chr11 1510022 1510096 -149273457 - MIR SINE MIR -123 139 66 247 215 0 32 chr11 1510617 1510710 -149272843 + GA-rich Low_complexity Low_complexity 3 92 0 181 237 51 0 chr11 1510910 1510969 -149272584 - MIR SINE MIR -61 147 86 380 250 0 0 chr11 1511427 1511511 -149272042 + MIR SINE MIR 68 151 -57 416 323 38 0 chr11 1512994 1513152 -149270401 + MIR SINE MIR 85 248 -14 233 304 48 32 chr11 1513855 1513980 -149269573 + MIR SINE MIR 59 185 -77 1792 163 3 7 chr11 1514163 1514464 -149269089 - AluJb SINE Alu 0 312 13 256 275 75 0 chr11 1514761 1514881 -149268672 - MLT1J2 LTR MaLR -288 162 34 191 295 39 26 chr11 1515042 1515120 -149268433 - L3 LINE CR1 -220 1357 1279 306 73 0 0 chr11 1516392 1516433 -149267120 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 212 26 62 chr11 1516969 1517082 -149266471 + (CCGGG)n Simple_repeat Simple_repeat 2 110 0 206 266 0 0 chr11 1517107 1517171 -149266382 + G-rich Low_complexity Low_complexity 1 64 0 226 217 9 47 chr11 1517209 1517315 -149266238 + C-rich Low_complexity Low_complexity 1 102 0 213 125 62 0 chr11 1517336 1517384 -149266169 + (CGGGG)n Simple_repeat Simple_repeat 3 53 0 25 51 0 0 chr11 1517435 1517474 -149266079 + GC_rich Low_complexity Low_complexity 1 39 0 233 170 0 38 chr11 1517707 1517760 -149265793 + CT-rich Low_complexity Low_complexity 2 52 0 447 278 0 0 chr11 1518255 1518431 -149265122 + (CCCCAG)n Simple_repeat Simple_repeat 3 178 0 223 179 45 15 chr11 1518614 1518681 -149264872 + (CCCGG)n Simple_repeat Simple_repeat 3 71 0 31 44 0 0 chr11 1518886 1518931 -149264622 + GC_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr11 1518955 1518978 -149264575 + GC_rich Low_complexity Low_complexity 1 23 0 39 92 0 0 chr11 1519055 1519164 -149264389 + GC_rich Low_complexity Low_complexity 1 109 0 261 119 0 0 chr11 1519669 1519711 -149263842 + (A)n Simple_repeat Simple_repeat 1 42 0 233 235 176 29 chr11 1521801 1521903 -149261650 + MIR3 SINE MIR 85 201 -7 260 326 132 21 chr11 1522203 1522347 -149261206 - MIR SINE MIR -102 160 1 239 302 52 10 chr11 1522860 1522956 -149260597 - L2 LINE L2 -40 3273 3174 3131 162 34 24 chr11 1523136 1523758 -149259795 - L1MC1 LINE L1 -166 6167 5540 400 341 97 19 chr11 1524023 1524343 -149259210 + MLT1I LTR MaLR 42 386 -23 1762 157 0 41 chr11 1524760 1525078 -149258475 + AluJb SINE Alu 1 305 -7 2188 104 0 0 chr11 1525080 1525377 -149258176 + AluY SINE Alu 1 297 -14 576 299 94 31 chr11 1525753 1525819 -149257734 - MLT1G1 LTR MaLR 0 595 535 2254 87 3 10 chr11 1525819 1526129 -149257424 + AluY SINE Alu 1 308 -3 576 299 94 31 chr11 1526129 1526526 -149257027 - MLT1G1 LTR MaLR -60 535 12 1849 151 3 10 chr11 1526636 1526927 -149256626 + AluJb SINE Alu 21 309 -3 296 283 42 17 chr11 1527184 1527304 -149256249 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 313 289 66 33 chr11 1527394 1527546 -149256007 - L1MC5 LINE L1 -45 7916 7760 859 175 0 0 chr11 1527547 1527690 -149255863 + FLAM_C SINE Alu 1 143 0 252 294 59 12 chr11 1528648 1528733 -149254820 + MIR3 SINE MIR 109 197 -11 954 187 88 75 chr11 1529104 1529170 -149254383 + MLT1A1 LTR MaLR 19 83 -282 1513 173 47 20 chr11 1529170 1529471 -149254082 + AluJo SINE Alu 1 309 -3 2050 126 3 19 chr11 1529472 1529789 -149253764 + AluSx SINE Alu 1 312 0 954 187 88 75 chr11 1529789 1530025 -149253528 + MLT1A1 LTR MaLR 82 327 -38 582 91 0 0 chr11 1530026 1530103 -149253450 + AluSp SINE Alu 56 132 -181 2124 109 3 0 chr11 1530105 1530431 -149253122 + AluSp SINE Alu 1 327 0 251 170 21 0 chr11 1530432 1530479 -149253074 + MLT1A1 LTR MaLR 410 457 0 2141 102 0 57 chr11 1530670 1531002 -149252551 + AluSq SINE Alu 1 313 0 218 265 15 0 chr11 1533590 1533658 -149249895 + (TCCG)n Simple_repeat Simple_repeat 2 70 0 258 105 0 0 chr11 1534587 1534625 -149248928 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 214 200 0 18 chr11 1535185 1535240 -149248313 + T-rich Low_complexity Low_complexity 2 55 0 1976 176 43 5 chr11 1535897 1536273 -149247280 - MLT1B LTR MaLR 0 390 1 196 354 13 0 chr11 1536886 1536965 -149246588 + MIR SINE MIR 45 124 -84 398 304 33 76 chr11 1537401 1537585 -149245968 - L1ME4a LINE L1 -2 6119 5944 24 0 0 0 chr11 1537599 1537623 -149245930 + AT_rich Low_complexity Low_complexity 1 24 0 1758 140 0 29 chr11 1537623 1537901 -149245652 - AluJo SINE Alu -24 288 19 764 186 0 0 chr11 1537917 1538041 -149245512 - FLAM_A SINE Alu -9 124 1 304 345 90 55 chr11 1539293 1539491 -149244062 - HAL1 LINE L1 -1204 1303 1090 1495 177 75 17 chr11 1539491 1539785 -149243768 - AluJb SINE Alu 0 312 2 304 345 90 55 chr11 1539785 1539876 -149243677 - HAL1 LINE L1 -1417 1090 1004 43 20 0 0 chr11 1540374 1540424 -149243129 + GC_rich Low_complexity Low_complexity 1 50 0 23 68 0 0 chr11 1540514 1540558 -149242995 + GC_rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr11 1540873 1540910 -149242643 + GC_rich Low_complexity Low_complexity 1 37 0 259 121 45 15 chr11 1540949 1541015 -149242538 + (CCGGG)n Simple_repeat Simple_repeat 3 70 0 182 236 91 0 chr11 1541305 1541360 -149242193 + L2 LINE L2 1880 1939 -1375 191 356 11 11 chr11 1543444 1543531 -149240022 - L2 LINE L2 -221 3051 2965 235 302 93 0 chr11 1545544 1545673 -149237880 - LTR48 LTR ERV1 -68 719 579 1771 145 35 10 chr11 1546872 1547161 -149236392 + AluJo SINE Alu 1 296 -16 239 333 21 0 chr11 1547299 1547395 -149236158 - MIR SINE MIR -81 181 84 317 247 6 0 chr11 1548827 1548993 -149234560 + (TG)n Simple_repeat Simple_repeat 1 167 0 198 207 0 0 chr11 1549009 1549067 -149234486 + (TG)n Simple_repeat Simple_repeat 2 59 0 2321 51 27 10 chr11 1550915 1551209 -149232344 + AluY SINE Alu 1 299 -12 230 238 32 16 chr11 1551618 1551681 -149231872 - L2 LINE L2 0 3272 3209 689 321 11 0 chr11 1560334 1560521 -149223032 + MIR SINE MIR 46 234 -28 245 327 154 29 chr11 1561850 1562058 -149221495 + L2 LINE L2 2572 2805 -509 210 372 75 21 chr11 1562191 1562379 -149221174 + L2 LINE L2 3102 3299 -14 1902 147 180 11 chr11 1562962 1563329 -149220224 + Tigger2a DNA MER2_type 4 432 -2 205 299 73 15 chr11 1565511 1565648 -149217905 + L2 LINE L2 2915 3059 -213 217 259 103 52 chr11 1566988 1567162 -149216391 + L2 LINE L2 454 636 -2678 266 299 159 75 chr11 1567327 1567792 -149215761 + L2 LINE L2 2804 3307 -6 285 29 0 0 chr11 1567874 1567908 -149215645 + (TG)n Simple_repeat Simple_repeat 1 34 0 251 210 7 91 chr11 1569046 1569189 -149214364 + (CACGT)n Simple_repeat Simple_repeat 5 135 0 224 202 8 40 chr11 1571578 1571702 -149211851 + G-rich Low_complexity Low_complexity 1 120 0 194 336 58 73 chr11 1571747 1571884 -149211669 - L2 LINE L2 -116 3156 3022 225 441 11 0 chr11 1572139 1572318 -149211235 - MIR SINE MIR -46 216 36 213 261 0 0 chr11 1572409 1572455 -149211098 - MIR3 SINE MIR -54 154 109 516 62 0 83 chr11 1573223 1573368 -149210185 + (TCC)n Simple_repeat Simple_repeat 1 133 0 2346 237 77 46 chr11 1573493 1574487 -149209066 - HAL1 LINE L1 -92 2415 1392 406 315 36 27 chr11 1574494 1574716 -149208837 - HAL1 LINE L1 -1893 614 391 406 275 42 75 chr11 1574765 1575005 -149208548 - HAL1 LINE L1 -2270 237 6 222 384 138 15 chr11 1575078 1575609 -149207944 + L2 LINE L2 1950 2545 -769 571 340 41 16 chr11 1575671 1575986 -149207567 + MLT1J LTR MaLR 41 363 -148 184 268 0 0 chr11 1576508 1576549 -149207004 + L2 LINE L2 3201 3241 -31 267 289 198 0 chr11 1577613 1577734 -149205819 + L2 LINE L2 3119 3263 -9 226 340 178 28 chr11 1578564 1579103 -149204450 + L2 LINE L2 2072 2691 -623 281 233 0 22 chr11 1579134 1579224 -149204329 + (TG)n Simple_repeat Simple_repeat 1 88 0 697 247 142 78 chr11 1579650 1580201 -149203352 - HAL1 LINE L1 -585 1922 1337 352 288 59 13 chr11 1580212 1580448 -149203105 - HAL1 LINE L1 -1244 1263 1017 197 313 119 99 chr11 1580563 1580965 -149202588 + L2 LINE L2 2817 3226 -46 1514 194 110 22 chr11 1580972 1581416 -149202137 - MLT1D LTR MaLR 0 505 23 264 30 0 0 chr11 1582700 1582733 -149200820 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 297 313 144 16 chr11 1582874 1583504 -149200049 + L1 LINE L1 2771 3481 -2665 366 333 165 12 chr11 1583560 1583815 -149199738 + L1 LINE L1 3543 3836 -2310 227 326 63 0 chr11 1584066 1584161 -149199392 + L2 LINE L2 3136 3236 -36 234 62 0 0 chr11 1584166 1584198 -149199355 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 351 167 51 0 chr11 1585313 1585391 -149198162 + MER103 DNA DNA 18 99 -67 271 253 12 0 chr11 1586538 1586621 -149196932 - L2 LINE L2 -339 2974 2891 192 333 200 0 chr11 1588145 1588250 -149195303 + MIR SINE MIR 135 260 -2 342 159 0 0 chr11 1588615 1588684 -149194869 + CT-rich Low_complexity Low_complexity 1 69 0 * 389 239 17 6 chr11 1588673 1588849 -149194704 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 698 208 12 0 chr11 1588860 1589293 -149194260 + (TCCA)n Simple_repeat Simple_repeat 1 438 0 254 235 10 0 chr11 1589309 1589411 -149194142 + (TCCA)n Simple_repeat Simple_repeat 2 104 0 190 372 35 26 chr11 1590147 1590260 -149193293 - L2 LINE L2 -20 3293 3180 325 299 75 21 chr11 1590464 1590705 -149192848 - L2 LINE L2 -427 2887 2634 322 188 35 0 chr11 1590941 1591026 -149192527 + GA-rich Low_complexity Low_complexity 4 91 0 1128 341 85 1 chr11 1592678 1593422 -149190131 + HAL1 LINE L1 977 1782 -725 417 352 20 52 chr11 1593617 1593867 -149189686 + HAL1b LINE L1 573 814 -534 482 144 19 0 chr11 1593982 1594086 -149189467 + HAL1b LINE L1 965 1070 -278 228 67 0 0 chr11 1594216 1594246 -149189307 + (CCCA)n Simple_repeat Simple_repeat 2 31 0 530 229 6 0 chr11 1594247 1594426 -149189127 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 207 69 0 0 chr11 1594679 1594708 -149188845 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 208 410 35 0 chr11 1595221 1595365 -149188188 - MIR SINE MIR -23 239 91 214 319 0 30 chr11 1595496 1595631 -149187922 + G-rich Low_complexity Low_complexity 2 132 0 201 132 0 0 chr11 1596955 1596993 -149186560 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 407 324 91 16 chr11 1597258 1597511 -149186042 - L1ME LINE L1 -311 5810 5539 821 251 5 5 chr11 1597595 1597794 -149185759 - MER58A DNA MER1_type 0 224 26 226 333 0 0 chr11 1598428 1598485 -149185068 + MIR SINE MIR 113 169 -93 320 267 103 0 chr11 1598885 1599001 -149184552 + MIR SINE MIR 15 142 -120 1046 261 46 4 chr11 1601588 1601921 -149181632 + MLT1A2 LTR MaLR 1 444 -23 321 290 73 17 chr11 1602547 1602694 -149180859 - MIR SINE MIR -62 146 5 224 295 71 36 chr11 1603240 1603352 -149180201 + MIR SINE MIR 31 146 -62 276 152 63 13 chr11 1603697 1603855 -149179698 + (CA)n Simple_repeat Simple_repeat 2 167 0 262 0 53 0 chr11 1603879 1603917 -149179636 + (CA)n Simple_repeat Simple_repeat 2 41 0 411 325 90 8 chr11 1604053 1604287 -149179266 + L2 LINE L2 2807 3059 -254 247 279 0 15 chr11 1604344 1604412 -149179141 + C-rich Low_complexity Low_complexity 2 68 0 1016 183 0 0 chr11 1609652 1609816 -149173737 - AluJo/FRAM SINE Alu -12 300 137 466 145 0 0 chr11 1609816 1609885 -149173668 - AluJ/FLAM SINE Alu -243 69 1 318 295 74 20 chr11 1610500 1610649 -149172904 + L2 LINE L2 2848 3004 -309 195 350 36 44 chr11 1612305 1612442 -149171111 - MIR3 SINE MIR -71 137 2 235 208 94 62 chr11 1612543 1612639 -149170914 - MIR SINE MIR -133 129 31 308 381 14 36 chr11 1613884 1614023 -149169530 - L1MC/D LINE L1 -2206 5602 5467 29 0 0 0 chr11 1615333 1615362 -149168191 + AT_rich Low_complexity Low_complexity 1 29 0 1354 186 48 11 chr11 1615366 1615720 -149167833 + Charlie5 DNA MER1_type 2235 2601 -11 1190 308 91 37 chr11 1615723 1617218 -149166335 + L1MEd LINE L1 113 1737 -4573 511 320 96 54 chr11 1617358 1617756 -149165797 + L1MEd LINE L1 1878 3318 -2811 5672 200 41 28 chr11 1617798 1619671 -149163882 + L1MEd LINE L1 3706 5600 -549 1521 283 63 67 chr11 1619674 1620915 -149162638 + L1M4 LINE L1 2558 3793 -2353 436 228 31 6 chr11 1621904 1622059 -149161494 + MIR SINE MIR 61 219 -43 188 151 170 19 chr11 1622110 1622163 -149161390 - MIR3 SINE MIR -52 156 96 258 81 0 0 chr11 1631423 1631460 -149152093 + (TC)n Simple_repeat Simple_repeat 2 38 0 218 358 47 34 chr11 1634605 1634753 -149148800 + MIR3 SINE MIR 34 183 -25 377 236 17 0 chr11 1635699 1635820 -149147733 + MLT1H LTR MaLR 1 143 -406 1966 112 34 0 chr11 1636012 1636281 -149147272 - AluSc SINE Alu -31 278 1 301 172 0 0 chr11 1636290 1636348 -149147205 + MLT1H LTR MaLR 492 549 0 533 261 119 42 chr11 1636644 1636955 -149146598 + MLT1H LTR MaLR 162 496 -53 588 332 160 27 chr11 1636958 1637220 -149146333 + L1ME LINE L1 721 1017 -5053 3577 263 87 76 chr11 1637253 1639315 -149144238 + L1ME LINE L1 2073 4111 -1969 1366 201 82 15 chr11 1639315 1639584 -149143969 + AluJo SINE Alu 1 287 -15 3577 263 87 76 chr11 1639584 1639762 -149143791 + L1ME LINE L1 4111 4286 -1794 782 189 8 0 chr11 1639762 1639894 -149143659 - FLAM_A SINE Alu 0 133 1 3577 263 87 76 chr11 1639894 1640259 -149143294 + L1ME LINE L1 4286 4707 -1373 1966 134 3 15 chr11 1640296 1640625 -149142928 - MER1B DNA MER1_type 0 339 15 471 318 52 20 chr11 1640703 1640955 -149142598 + L1ME LINE L1 4819 5078 -1002 3199 149 43 63 chr11 1641579 1642420 -149141133 + LTR1 LTR ERV1 1 785 0 3840 240 42 37 chr11 1644013 1646366 -149137187 - L1MD1 LINE L1 -13 6229 3753 855 160 0 7 chr11 1646421 1646565 -149136988 + FLAM_C SINE Alu 1 143 0 547 358 47 5 chr11 1646766 1647191 -149136362 - L1ME3A LINE L1 -288 5882 5440 552 301 77 34 chr11 1647383 1647437 -149136116 - L1ME3A LINE L1 -873 5273 5223 1587 224 78 51 chr11 1647437 1647612 -149135941 + MLT1D LTR MaLR 3 172 -333 1563 180 3 32 chr11 1647612 1647895 -149135658 + AluJo SINE Alu 1 275 -37 300 27 0 0 chr11 1647897 1647934 -149135619 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1587 224 78 51 chr11 1647934 1648245 -149135308 + MLT1D LTR MaLR 172 505 0 552 301 77 34 chr11 1648245 1648814 -149134739 - L1ME3A LINE L1 -923 5223 4606 1059 148 64 49 chr11 1648983 1649268 -149134285 - L1M4 LINE L1 -664 5514 5227 470 168 32 0 chr11 1649502 1649597 -149133956 + L1MB7 LINE L1 6035 6132 -52 1578 209 50 47 chr11 1650374 1650738 -149132815 + MLT1A1 LTR MaLR 1 365 0 259 302 20 20 chr11 1650846 1650995 -149132558 + (CAGCT)n Simple_repeat Simple_repeat 4 152 0 201 159 0 0 chr11 1650998 1651042 -149132511 + (CACAA)n Simple_repeat Simple_repeat 3 46 0 931 139 114 0 chr11 1653190 1653348 -149130205 - AluSg/x SINE Alu -11 301 126 2042 58 41 55 chr11 1653348 1653641 -149129912 - AluY SINE Alu -22 289 1 415 271 11 0 chr11 1653677 1653792 -149129761 - MIR SINE MIR -63 145 32 1905 249 44 7 chr11 1656375 1656962 -149126591 + L1MC3 LINE L1 7177 7785 0 2114 120 0 0 chr11 1656979 1657287 -149126266 + AluSx SINE Alu 1 308 0 230 360 9 18 chr11 1657661 1657775 -149125778 + L1M4 LINE L1 4265 4377 -1769 373 347 9 14 chr11 1657846 1658065 -149125488 + L1M4 LINE L1 4479 4696 -1450 341 327 45 0 chr11 1658518 1658628 -149124925 + L2 LINE L2 3199 3313 0 949 199 24 74 chr11 1662113 1662570 -149120983 + MLT1D LTR MaLR 19 501 -4 253 233 47 0 chr11 1662734 1662820 -149120733 + MER113 DNA MER1_type? 50 139 -382 231 293 0 0 chr11 1664783 1664841 -149118712 + L2 LINE L2 3004 3061 -211 1213 226 29 7 chr11 1667226 1667535 -149116018 + MLT1B LTR MaLR 58 373 -17 191 345 17 0 chr11 1668322 1668380 -149115173 - MIR SINE MIR -113 149 91 459 35 0 0 chr11 1669305 1669362 -149114191 + (GA)n Simple_repeat Simple_repeat 1 57 0 300 27 0 0 chr11 1669361 1669398 -149114155 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 222 37 0 0 chr11 1669950 1669977 -149113576 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 258 169 34 17 chr11 1670068 1670127 -149113426 - MIR SINE MIR -60 148 89 730 193 76 6 chr11 1672730 1672901 -149110652 + MLT1D LTR MaLR 319 501 -4 409 270 113 0 chr11 1672909 1673068 -149110485 + L2 LINE L2 2525 2701 -613 290 306 187 8 chr11 1673118 1673353 -149110200 + L2 LINE L2 2857 3133 -180 1011 213 157 28 chr11 1673374 1673661 -149109892 + MER2 DNA MER2_type 1 324 -21 187 156 89 44 chr11 1673725 1673770 -149109783 + L2 LINE L2 3223 3269 -3 384 289 19 0 chr11 1673784 1673888 -149109665 - MIR SINE MIR -47 215 110 278 308 108 10 chr11 1675047 1675242 -149108311 - L2 LINE L2 -371 2943 2730 438 291 82 10 chr11 1675416 1675612 -149107941 + LTR33 LTR ERVL 15 224 -297 359 246 164 25 chr11 1675809 1675931 -149107622 - MIR SINE MIR -100 162 24 204 313 30 15 chr11 1679764 1679831 -149103722 - MIR SINE MIR -108 154 87 362 300 196 9 chr11 1680537 1680767 -149102786 + L2 LINE L2 1874 2146 -1168 189 94 0 0 chr11 1683660 1683692 -149099861 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 891 187 123 25 chr11 1683724 1683927 -149099626 - AluJo SINE Alu -76 236 14 203 310 70 30 chr11 1683971 1684071 -149099482 - MIR SINE MIR -89 173 70 197 319 42 0 chr11 1684181 1684253 -149099300 + MER5A DNA MER1_type 67 141 -48 190 329 41 0 chr11 1688637 1688710 -149094843 - L2 LINE L2 -18 3295 3220 309 346 31 25 chr11 1690820 1690979 -149092574 + L2 LINE L2 3113 3272 0 4687 173 34 12 chr11 1691976 1693708 -149089845 + L1MB7 LINE L1 4424 6175 -9 308 286 93 39 chr11 1695340 1695522 -149088031 + MIR SINE MIR 3 194 -14 2251 215 122 8 chr11 1696573 1697080 -149086473 - MLT1F1 LTR MaLR -2 565 1 190 322 46 35 chr11 1697237 1697324 -149086229 + L2 LINE L2 3214 3301 -12 492 297 92 20 chr11 1698443 1698692 -149084861 + L2 LINE L2 2551 2817 -497 190 358 43 12 chr11 1699716 1699878 -149083675 - MIR3 SINE MIR -8 200 34 197 256 23 0 chr11 1700924 1700967 -149082586 + L2 LINE L2 3180 3223 -90 913 295 70 17 chr11 1701375 1701677 -149081876 - MER45C DNA AcHobo -616 337 20 25 51 0 0 chr11 1702405 1702444 -149081109 + GC_rich Low_complexity Low_complexity 1 39 0 250 323 114 30 chr11 1704926 1705093 -149078460 + L2 LINE L2 3119 3299 -14 894 287 42 51 chr11 1705319 1705768 -149077785 + L1M4 LINE L1 3661 4105 -2041 588 224 8 0 chr11 1705860 1705994 -149077559 - Charlie1 DNA MER1_type -4 2757 2623 * 687 218 198 0 chr11 1705978 1706180 -149077373 - Charlie1 DNA MER1_type -2519 242 1 468 349 99 29 chr11 1706274 1707080 -149076473 + L1M4 LINE L1 4308 5170 -976 295 186 29 14 chr11 1707101 1707171 -149076382 + Charlie1 DNA MER1_type 68 138 -2623 438 328 90 16 chr11 1707298 1707554 -149075999 + L1M4 LINE L1 5370 5644 -534 358 310 213 18 chr11 1708049 1708542 -149075011 + L2 LINE L2 2718 3306 -7 920 227 58 5 chr11 1708652 1708859 -149074694 - MER20 DNA MER1_type 0 219 2 232 175 18 53 chr11 1708983 1709040 -149074513 + MLT1K LTR MaLR 155 209 -379 188 327 0 0 chr11 1710363 1710415 -149073138 - L2 LINE L2 0 3313 3262 502 320 85 29 chr11 1710695 1711011 -149072542 - L2 LINE L2 -559 2755 2422 255 277 108 40 chr11 1712840 1712988 -149070565 - MIR SINE MIR -66 196 39 360 0 0 0 chr11 1720661 1720701 -149062852 + (CTCA)n Simple_repeat Simple_repeat 2 41 0 229 356 69 59 chr11 1720703 1721023 -149062530 - L2 LINE L2 -14 3258 2936 288 339 136 0 chr11 1721060 1721237 -149062316 + MIR SINE MIR 62 262 0 2156 167 30 8 chr11 1722283 1722685 -149060868 + L1MD1 LINE L1 5832 6242 0 317 332 52 57 chr11 1722720 1722949 -149060604 + L1MC4a LINE L1 4407 4634 -1512 24 0 0 0 chr11 1722950 1722974 -149060579 + AT_rich Low_complexity Low_complexity 1 24 0 2039 138 7 0 chr11 1722984 1723289 -149060264 + AluSx SINE Alu 1 307 -5 728 265 103 0 chr11 1723683 1723887 -149059666 - MIR SINE MIR -27 235 11 725 371 80 11 chr11 1724597 1725074 -149058479 + L1MC4a LINE L1 4742 5251 -895 621 263 115 7 chr11 1725116 1725386 -149058167 + L1MC4a LINE L1 5326 5624 -2184 259 271 119 25 chr11 1726132 1726250 -149057303 + L1MC4a LINE L1 5738 5866 -1942 234 277 19 69 chr11 1727004 1727163 -149056390 + L1MC4a LINE L1 5879 6029 -1779 243 0 0 0 chr11 1728316 1728343 -149055210 + (T)n Simple_repeat Simple_repeat 1 27 0 210 244 0 0 chr11 1728750 1728791 -149054762 + (CACG)n Simple_repeat Simple_repeat 3 43 0 316 284 52 17 chr11 1730426 1730542 -149053011 + MIR SINE MIR 16 135 -73 328 308 23 30 chr11 1732563 1732696 -149050857 + MIR3 SINE MIR 49 180 -28 183 375 31 10 chr11 1732694 1732790 -149050763 + L2 LINE L2 3167 3264 -8 * 265 342 114 6 chr11 1733411 1733569 -149049984 - MIR SINE MIR -1 261 87 1935 315 77 17 chr11 1733663 1735335 -149048218 + L1ME3A LINE L1 4416 6168 -2 216 356 22 30 chr11 1735919 1736054 -149047499 - MIR3 SINE MIR -72 136 3 272 285 135 89 chr11 1742321 1742693 -149040860 - L1MC/D LINE L1 -746 5400 5209 6528 208 135 53 chr11 1742949 1745018 -149038535 + L1MD3 LINE L1 4975 7486 -509 538 178 16 47 chr11 1745018 1745147 -149038406 + MLT1F1 LTR MaLR 1 125 -442 6528 208 135 53 chr11 1745147 1745672 -149037881 + L1MD3 LINE L1 7486 7966 -29 1357 272 129 29 chr11 1745685 1746649 -149036904 + L1M4 LINE L1 4370 5429 -735 181 227 186 72 chr11 1746852 1746949 -149036604 - MIR SINE MIR -108 154 47 21 0 0 0 chr11 1748054 1748075 -149035478 + AT_rich Low_complexity Low_complexity 1 21 0 274 161 169 97 chr11 1748079 1748203 -149035350 + L1ME4a LINE L1 5961 6093 -28 896 267 91 98 chr11 1749193 1749774 -149033779 + MLT1K LTR MaLR 2 578 -10 240 301 131 31 chr11 1751629 1751858 -149031695 + LTR16C LTR ERVL 42 293 -198 585 316 90 17 chr11 1751953 1752241 -149031312 - L2 LINE L2 -555 2759 2451 8539 184 65 39 chr11 1752594 1754951 -149028602 + L1MA5 LINE L1 1438 3733 -3115 1512 169 48 11 chr11 1754951 1755223 -149028330 - AluJb SINE Alu -30 282 1 8539 184 65 39 chr11 1755223 1756343 -149027210 + L1MA5 LINE L1 3733 5026 -1822 1538 191 38 0 chr11 1756343 1756610 -149026943 + AluJb SINE Alu 5 281 -31 8539 184 65 39 chr11 1756610 1756903 -149026650 + L1MA5 LINE L1 5026 5310 -1538 * 11145 195 53 17 chr11 1756902 1760665 -149022888 + L1MA4A LINE L1 1 4036 -2812 4911 154 72 9 chr11 1760669 1762587 -149020966 + L1MA4A LINE L1 4959 7005 0 1177 202 0 0 chr11 1762596 1762799 -149020754 + AluJo SINE Alu 27 229 -83 40281 54 4 9 chr11 1762800 1768981 -149014572 + L1PA5 LINE L1 2 6149 -5 604 175 0 14 chr11 1769016 1769159 -149014394 + L1MA5 LINE L1 5302 5442 -1406 952 257 13 13 chr11 1769159 1769385 -149014168 - MER8 DNA MER2_type 0 239 14 2972 165 83 6 chr11 1769385 1770471 -149013082 + L1MA5 LINE L1 5449 6602 -400 853 132 25 13 chr11 1770473 1770632 -149012921 + L1MA5 LINE L1 6842 7002 0 1049 193 77 36 chr11 1770656 1770948 -149012605 + L1MB3 LINE L1 4012 4323 -1823 2433 85 0 3 chr11 1770948 1771255 -149012298 - AluY SINE Alu -5 306 1 1049 193 77 36 chr11 1771255 1771325 -149012228 + L1MB3 LINE L1 4323 4389 -1757 311 333 16 32 chr11 1771343 1771469 -149012084 + L1MA9 LINE L1 2154 2277 -5289 2378 267 42 23 chr11 1771471 1772675 -149010878 + L1MA9 LINE L1 2096 3404 -4162 3251 208 23 6 chr11 1772704 1773488 -149010065 + L1MA9 LINE L1 5030 5826 -1739 1339 227 9 9 chr11 1773479 1773823 -149009730 + L1M3 LINE L1 4807 5150 -996 * 4534 166 59 44 chr11 1773823 1775110 -149008443 + L1MA9 LINE L1 5828 7166 -565 1726 179 3 7 chr11 1775110 1775406 -149008147 + AluJo SINE Alu 6 300 -12 4534 166 59 44 chr11 1775406 1775981 -149007572 + L1MA9 LINE L1 7166 7731 0 2624 194 46 101 chr11 1775980 1776329 -149007224 + L1MB3 LINE L1 4392 4759 -1421 * 1555 221 10 0 chr11 1776329 1776623 -149006930 + AluJb SINE Alu 1 297 -15 2624 194 46 101 chr11 1776623 1777288 -149006265 + L1MB3 LINE L1 4759 5328 -852 2278 79 24 0 chr11 1777288 1777578 -149005975 + AluY SINE Alu 1 297 -14 2624 194 46 101 chr11 1777578 1777729 -149005824 + L1MB3 LINE L1 5328 5486 -694 752 224 0 33 chr11 1777743 1777895 -149005658 + AluJb SINE Alu 143 289 -23 3460 168 23 12 chr11 1777903 1778595 -149004958 + L1MB3 LINE L1 5480 6179 -4 1865 180 3 2 chr11 1778615 1779155 -149004398 + L1MC1 LINE L1 5029 5570 -744 587 186 0 17 chr11 1779161 1779279 -149004274 + L1M3 LINE L1 5534 5649 -534 4093 142 13 38 chr11 1779317 1779830 -149003723 + L1MC1 LINE L1 5586 6075 -258 1861 110 190 19 chr11 1779830 1780194 -149003359 - MSTA LTR MaLR -2 426 1 4093 142 13 38 chr11 1780194 1780446 -149003107 + L1MC1 LINE L1 6075 6332 -1 1087 226 51 11 chr11 1780492 1781030 -149002523 + L1MC4a LINE L1 2252 2810 -3572 * 8221 196 68 29 chr11 1781028 1781606 -149001947 + L1MA9 LINE L1 3127 3681 -2867 5157 115 21 53 chr11 1781606 1781879 -149001674 + L1PA16 LINE L1 5151 5431 -735 2215 121 0 3 chr11 1781879 1782233 -149001320 + AluSx SINE Alu 1 312 0 5157 115 21 53 chr11 1782233 1782641 -149000912 + L1PA16 LINE L1 5431 5791 -375 2393 86 3 0 chr11 1782641 1782945 -149000608 + AluSp SINE Alu 1 305 -8 5157 115 21 53 chr11 1782945 1783304 -149000249 + L1PA16 LINE L1 5791 6160 -6 8221 196 68 29 chr11 1783304 1784737 -148998816 + L1MA9 LINE L1 3681 5057 -1491 1225 118 81 5 chr11 1784737 1784948 -148998605 - MER30 DNA MER1_type -3 227 1 8221 196 68 29 chr11 1784948 1786147 -148997406 + L1MA9 LINE L1 5057 6466 -82 26 0 0 0 chr11 1786167 1786193 -148997360 + AT_rich Low_complexity Low_complexity 1 26 0 6844 220 52 46 chr11 1786209 1788735 -148994818 + L1MC4a LINE L1 2811 5351 -1031 336 132 0 0 chr11 1788730 1788783 -148994770 + L1MB5 LINE L1 6084 6136 -38 * 1039 261 126 10 chr11 1789064 1789478 -148994075 + L1MC4a LINE L1 5964 6425 -1619 1784 230 53 93 chr11 1789910 1790740 -148992813 + L1M4 LINE L1 684 1480 -5062 1830 134 124 0 chr11 1790762 1791061 -148992492 - MER1B DNA MER1_type -1 336 1 1107 217 35 67 chr11 1791291 1791645 -148991908 + L1M4 LINE L1 2529 2814 -3830 2065 141 27 0 chr11 1791645 1791944 -148991609 + AluSx SINE Alu 1 307 -5 1107 217 35 67 chr11 1791944 1792159 -148991394 + L1M4 LINE L1 2814 3034 -3610 270 164 0 45 chr11 1792186 1792253 -148991300 - L1M4 LINE L1 -3549 2597 2534 6263 222 40 80 chr11 1792332 1794368 -148989185 + L1MB3 LINE L1 1503 3620 -2627 1222 178 48 96 chr11 1794368 1794682 -148988871 + AluJo SINE Alu 1 299 -3 6263 222 40 80 chr11 1794682 1795447 -148988106 + L1MB3 LINE L1 3620 4415 -1832 2058 165 25 6 chr11 1795447 1795805 -148987748 - MLT1A1 LTR MaLR 0 365 1 6263 222 40 80 chr11 1795805 1795954 -148987599 + L1MB3 LINE L1 4415 4569 -1678 2524 77 0 3 chr11 1795954 1796264 -148987289 + AluY SINE Alu 1 309 -2 6263 222 40 80 chr11 1796264 1796453 -148987100 + L1MB3 LINE L1 4569 4764 -1483 2331 151 57 5 chr11 1796453 1796857 -148986696 - MSTB LTR MaLR 0 426 2 6263 222 40 80 chr11 1796857 1797041 -148986512 + L1MB3 LINE L1 4764 4954 -1293 397 167 52 0 chr11 1797041 1797137 -148986416 + L1MB3 LINE L1 6152 6252 0 6263 222 40 80 chr11 1797137 1798306 -148985247 + L1MB3 LINE L1 4954 5667 -580 2142 101 3 3 chr11 1798315 1798611 -148984942 + AluSg SINE Alu 1 296 -14 1128 172 33 25 chr11 1798624 1798868 -148984685 + L1MB8 LINE L1 5854 6099 -79 689 179 22 8 chr11 1798873 1799007 -148984546 + Tigger1 DNA MER2_type 22 157 -2261 * 1310 105 29 5 chr11 1798996 1799206 -148984347 + Tigger1 DNA MER2_type 2202 2416 -2 503 131 0 0 chr11 1799206 1799290 -148984263 + L1MB8 LINE L1 6095 6178 0 2447 228 37 21 chr11 1799295 1799946 -148983607 + L1MD1 LINE L1 5050 5743 -499 2312 165 65 45 chr11 1799946 1800437 -148983116 - MLT1D LTR MaLR 0 505 5 2447 228 37 21 chr11 1800437 1800937 -148982616 + L1MD1 LINE L1 5743 6234 -8 620 150 55 8 chr11 1800952 1801079 -148982474 + L1M4 LINE L1 5320 5452 -726 1478 285 77 31 chr11 1801214 1801976 -148981577 + L1MC4 LINE L1 7244 8040 -2 875 200 184 0 chr11 1802022 1802207 -148981346 + MER20 DNA MER1_type 1 219 0 2179 162 12 54 chr11 1802356 1802763 -148980790 + MLT1B LTR MaLR 1 390 0 310 321 53 79 chr11 1802769 1803034 -148980519 + L1M4c LINE L1 937 1194 -5190 673 273 41 5 chr11 1803400 1803594 -148979959 - MIR SINE MIR -49 213 13 1536 329 123 38 chr11 1803785 1804676 -148978877 + L1M4c LINE L1 2887 3853 -2529 735 280 76 16 chr11 1804848 1805280 -148978273 - L1MC/D LINE L1 -2039 5769 5312 30 27 0 0 chr11 1805400 1805437 -148978116 + AT_rich Low_complexity Low_complexity 1 37 0 2178 239 28 40 chr11 1805440 1806217 -148977336 - L1ME1 LINE L1 -4 6162 5395 3994 111 12 0 chr11 1806217 1806856 -148976697 - Tigger1 DNA MER2_type -656 1762 1116 357 141 141 13 chr11 1806856 1806934 -148976619 - Tigger1 DNA MER2_type -2330 88 1 616 253 11 0 chr11 1806934 1807120 -148976433 - L1ME1 LINE L1 -1769 4377 4190 1118 310 93 26 chr11 1807123 1808238 -148975315 + L1MEd LINE L1 447 1682 -4628 184 304 87 0 chr11 1809028 1809097 -148974456 + L2 LINE L2 3039 3113 -159 182 204 143 0 chr11 1809347 1809396 -148974157 - L2 LINE L2 -339 2974 2919 287 222 56 0 chr11 1813955 1814027 -148969526 - L2 LINE L2 -307 3006 2931 449 96 0 101 chr11 1817600 1817798 -148965755 + (CA)n Simple_repeat Simple_repeat 2 179 0 282 232 0 0 chr11 1817812 1817976 -148965577 + (CA)n Simple_repeat Simple_repeat 2 165 0 216 234 30 24 chr11 1818066 1818233 -148965320 + (CATA)n Simple_repeat Simple_repeat 2 169 0 231 152 30 15 chr11 1818261 1818327 -148965226 + (CA)n Simple_repeat Simple_repeat 2 68 0 367 221 182 0 chr11 1821769 1821923 -148961630 + Charlie1 DNA MER1_type 2436 2617 -144 27 0 0 0 chr11 1822238 1822265 -148961288 + AT_rich Low_complexity Low_complexity 1 27 0 189 383 11 11 chr11 1824033 1824127 -148959426 + MIR SINE MIR 77 170 -92 274 155 52 0 chr11 1824906 1824964 -148958589 + L2 LINE L2 3006 3066 -206 217 333 0 0 chr11 1825290 1825350 -148958203 - MIR SINE MIR -109 153 94 351 247 137 93 chr11 1826126 1826490 -148957063 + MLT1G1 LTR MaLR 1 380 -10 340 291 10 0 chr11 1828812 1828915 -148954638 - MER45C DNA AcHobo -129 824 721 544 289 0 6 chr11 1828997 1829156 -148954397 - MER45C DNA AcHobo -738 215 58 197 217 66 57 chr11 1830587 1830693 -148952860 - MIR SINE MIR -62 146 40 242 236 79 71 chr11 1832462 1832589 -148950964 + MIR SINE MIR 113 240 -22 2270 101 0 3 chr11 1833122 1833429 -148950124 + AluSg SINE Alu 1 306 -4 279 351 36 0 chr11 1833547 1833658 -148949895 + L2 LINE L2 3199 3313 0 2149 88 0 39 chr11 1833980 1834319 -148949234 - AluSx SINE Alu 0 312 1 206 296 0 0 chr11 1835818 1835872 -148947681 - MIR SINE MIR -114 148 95 2766 214 57 69 chr11 1836806 1837697 -148945856 + L1MB3 LINE L1 5281 6156 -27 2161 101 3 7 chr11 1837697 1837994 -148945559 - AluSx SINE Alu -16 296 1 2766 214 57 69 chr11 1837994 1838022 -148945531 + L1MB3 LINE L1 6156 6183 0 530 227 8 0 chr11 1838051 1838170 -148945383 + L1MB5 LINE L1 6019 6138 -36 205 156 0 0 chr11 1840065 1840097 -148943456 + C-rich Low_complexity Low_complexity 2 33 0 364 295 27 0 chr11 1840690 1840802 -148942751 + MIR SINE MIR 77 191 -71 2401 41 7 3 chr11 1841076 1841371 -148942182 - AluY SINE Alu 0 311 16 254 298 61 35 chr11 1844209 1844407 -148939146 - L1M4 LINE L1 -3240 2906 2704 395 308 35 0 chr11 1844690 1844833 -148938720 + MLT1G1 LTR MaLR 448 595 0 392 352 102 22 chr11 1844892 1845207 -148938346 - L1M4 LINE L1 -3540 2606 2267 866 247 49 45 chr11 1845679 1845902 -148937651 - MER58A DNA MER1_type 0 224 1 1184 192 108 26 chr11 1845938 1846282 -148937271 + MLT1C LTR MaLR 8 379 -88 3429 227 49 115 chr11 1847916 1848290 -148935263 + L1ME1 LINE L1 3398 3795 -2371 2252 94 0 13 chr11 1848290 1848597 -148934956 + AluSq SINE Alu 1 303 -10 3429 227 49 115 chr11 1848597 1848628 -148934925 + L1ME1 LINE L1 3795 3826 -2340 207 0 0 0 chr11 1848628 1848651 -148934902 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 3429 227 49 115 chr11 1848651 1851195 -148932358 + L1ME1 LINE L1 3826 6161 -5 387 304 144 22 chr11 1854143 1854555 -148928998 + L2 LINE L2 2634 3109 -204 1966 134 0 13 chr11 1854772 1855078 -148928475 + AluSx SINE Alu 1 302 -10 2710 232 83 60 chr11 1855182 1855542 -148928011 + L1ME1 LINE L1 2216 2566 -3649 399 100 11 89 chr11 1855542 1855632 -148927921 + L1MA5 LINE L1 6217 6299 -1 2710 232 83 60 chr11 1855632 1856609 -148926944 + L1ME1 LINE L1 2566 3544 -2671 881 271 83 56 chr11 1856837 1858708 -148924845 + L1ME1 LINE L1 3521 5432 -803 1741 165 7 3 chr11 1858708 1859005 -148924548 + AluJo SINE Alu 1 298 -14 881 271 83 56 chr11 1859005 1859827 -148923726 + L1ME1 LINE L1 5432 6230 -5 302 300 0 11 chr11 1860062 1860152 -148923401 - MIR SINE MIR -78 184 96 220 399 14 14 chr11 1861169 1861312 -148922241 + (CGTG)n Simple_repeat Simple_repeat 3 145 0 199 205 0 0 chr11 1861970 1862009 -148921544 - L2 LINE L2 -528 2786 2748 237 304 22 0 chr11 1864166 1864258 -148919295 + L1MC4 LINE L1 7808 7901 -141 1751 174 9 22 chr11 1864265 1864581 -148918972 + AluJb SINE Alu 1 312 0 594 266 85 0 chr11 1864934 1865133 -148918420 - MER58A DNA MER1_type -8 216 1 * 1029 213 16 56 chr11 1865133 1865532 -148918021 + MLT1C LTR MaLR 18 375 -15 268 226 0 0 chr11 1867421 1867474 -148916079 + L2 LINE L2 3261 3313 0 356 354 17 17 chr11 1868631 1868809 -148914744 + (CACG)n Simple_repeat Simple_repeat 1 178 0 188 326 264 4 chr11 1870221 1870482 -148913071 - L2 LINE L2 -351 2963 2635 365 331 11 22 chr11 1871407 1871588 -148911965 + (CA)n Simple_repeat Simple_repeat 2 180 0 255 347 8 8 chr11 1871638 1871759 -148911794 + (CA)n Simple_repeat Simple_repeat 1 121 0 304 272 76 0 chr11 1872210 1872302 -148911251 + L1MB7 LINE L1 3726 3824 -2322 384 390 47 36 chr11 1872878 1873240 -148910313 + L1MB7 LINE L1 4614 4979 -1167 624 303 127 17 chr11 1874476 1874879 -148908674 + L1MB7 LINE L1 5738 6184 0 627 262 63 9 chr11 1878089 1878310 -148905243 - MLT1D LTR MaLR -265 240 8 180 0 0 0 chr11 1878510 1878530 -148905023 + (A)n Simple_repeat Simple_repeat 1 20 0 2147 90 0 37 chr11 1878782 1879105 -148904448 + AluSx SINE Alu 1 311 -1 786 193 86 6 chr11 1881026 1881232 -148902321 + L1MB3 LINE L1 5974 6183 0 286 253 147 7 chr11 1882334 1882484 -148901069 - MLT1D LTR MaLR -290 215 45 929 201 0 5 chr11 1882618 1882825 -148900728 - AluJo SINE Alu 0 312 121 290 163 0 0 chr11 1885545 1885594 -148897959 - MER58A DNA MER1_type -19 88 40 336 280 56 15 chr11 1885977 1886117 -148897436 - MIR SINE MIR -62 146 39 1207 212 58 18 chr11 1886915 1887245 -148896308 + L1PB4 LINE L1 5814 6156 0 2307 46 18 0 chr11 1887447 1887728 -148895825 - AluY SINE Alu -21 290 5 280 356 40 6 chr11 1889696 1889870 -148893683 - MLT1J LTR MaLR -310 201 22 202 328 31 0 chr11 1891141 1891205 -148892348 - L2 LINE L2 -28 3244 3179 234 271 56 28 chr11 1891314 1891421 -148892132 - L2 LINE L2 -309 3004 2895 1727 160 3 30 chr11 1891662 1891962 -148891591 - AluJo SINE Alu -16 296 5 1817 149 0 44 chr11 1891970 1892291 -148891262 - AluJo SINE Alu -2 310 4 334 335 128 33 chr11 1894360 1894993 -148888560 + L2 LINE L2 2023 2715 -599 295 353 35 0 chr11 1895043 1895304 -148888249 + L1MC4a LINE L1 4963 5232 -914 791 280 42 8 chr11 1895316 1895958 -148887595 + L1MC4a LINE L1 5256 5728 -585 561 237 149 0 chr11 1895975 1896169 -148887384 + L1M4 LINE L1 4895 5117 -1029 539 202 0 28 chr11 1896166 1896312 -148887241 - L1M1 LINE L1 -499 5665 5588 * 1940 262 37 34 chr11 1896295 1897056 -148886497 + L1M4 LINE L1 2140 2905 -3241 1168 130 12 0 chr11 1897056 1897225 -148886328 + L1PA10 LINE L1 5998 6168 0 1940 262 37 34 chr11 1897225 1897338 -148886215 + L1M4 LINE L1 2905 3016 -3130 11537 152 20 11 chr11 1897348 1897506 -148886047 - L1MA3 LINE L1 0 7724 7569 1814 166 7 3 chr11 1897506 1897808 -148885745 - AluSx SINE Alu -9 303 1 11537 152 20 11 chr11 1897808 1898578 -148884975 - L1MA3 LINE L1 -155 7569 6808 2654 26 0 3 chr11 1898578 1898888 -148884665 - L1PA4 LINE L1 0 6155 5847 11537 152 20 11 chr11 1898888 1901277 -148882276 - L1MA3 LINE L1 -916 6808 4371 5926 50 1 1 chr11 1901268 1902071 -148881482 - L1PA7 LINE L1 -22 6132 5330 * 343 71 18 0 chr11 1902067 1902123 -148881430 + L1P LINE L1 4448 4504 -1642 * 2136 174 29 37 chr11 1902121 1903105 -148880448 - L1MA3 LINE L1 -3170 4395 3258 28604 110 14 25 chr11 1903108 1905819 -148877734 + L1PA8 LINE L1 6 2744 -3743 2395 97 0 3 chr11 1905819 1906128 -148877425 - AluY SINE Alu -3 308 1 28604 110 14 25 chr11 1906128 1909930 -148873623 + L1PA8 LINE L1 2744 6480 -7 18143 128 79 12 chr11 1909919 1911276 -148872277 - L1MA3 LINE L1 -4282 3283 2019 * 2248 108 30 0 chr11 1911276 1911397 -148872156 + AluSp SINE Alu 1 117 -196 243 0 0 0 chr11 1911397 1911424 -148872129 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2248 108 30 0 chr11 1911424 1911598 -148871955 + AluSp SINE Alu 117 305 -8 18143 128 79 12 chr11 1911598 1913308 -148870245 - L1MA3 LINE L1 -5546 2019 10 9452 193 39 17 chr11 1913304 1915357 -148868196 + L1MB2 LINE L1 3013 5158 -1013 * 2093 135 133 3 chr11 1915357 1915734 -148867819 + MSTB LTR MaLR 1 426 0 9452 193 39 17 chr11 1915734 1916769 -148866784 + L1MB2 LINE L1 5158 6169 -2 4363 279 58 40 chr11 1916765 1917817 -148865736 + L1MC4a LINE L1 5885 6967 -841 * 2243 122 6 3 chr11 1917817 1918128 -148865425 + AluSx SINE Alu 1 312 0 4363 279 58 40 chr11 1918128 1918984 -148864569 + L1MC4a LINE L1 6967 7807 -1 367 351 4 30 chr11 1919005 1919236 -148864317 + L2 LINE L2 2809 3033 -280 481 331 68 11 chr11 1919666 1919932 -148863621 + L1ME4a LINE L1 5538 5818 -303 225 94 0 0 chr11 1920063 1920095 -148863458 + (CA)n Simple_repeat Simple_repeat 1 32 0 369 259 12 0 chr11 1920156 1920241 -148863312 - MIR SINE MIR -65 197 112 3576 126 2 0 chr11 1920266 1920790 -148862763 - MER1A DNA MER1_type -2 525 1 309 250 188 0 chr11 1920937 1921065 -148862488 + L1ME4a LINE L1 5967 6118 -3 1001 286 74 70 chr11 1921257 1921638 -148861915 - L1MC4 LINE L1 -16 8026 7648 2471 102 5 30 chr11 1921638 1922011 -148861542 + THE1B LTR MaLR 1 364 0 11502 86 5 0 chr11 1922011 1923584 -148859969 + THE1B-int LTR MaLR 1 1580 0 2288 126 5 27 chr11 1923584 1923956 -148859597 + THE1B LTR MaLR 1 364 0 1001 286 74 70 chr11 1923956 1924327 -148859226 - L1MC4 LINE L1 -393 7649 7269 242 269 84 34 chr11 1924390 1924509 -148859044 - L1MC4 LINE L1 -912 7130 7006 733 142 45 52 chr11 1924531 1924665 -148858888 - FLAM_C SINE Alu 0 133 1 1998 150 0 7 chr11 1925293 1925593 -148857960 + AluSx SINE Alu 1 298 -14 331 345 54 25 chr11 1925960 1926163 -148857390 - L1M4 LINE L1 -3299 2847 2639 1936 131 68 37 chr11 1926280 1926632 -148856921 - THE1B LTR MaLR -1 363 1 1095 266 62 11 chr11 1926916 1927288 -148856265 + L1MB7 LINE L1 5776 6166 -18 223 186 314 0 chr11 1927317 1927403 -148856150 + MIR SINE MIR 31 143 -119 446 247 6 0 chr11 1929841 1930019 -148853534 + (CA)n Simple_repeat Simple_repeat 1 179 0 384 283 3 0 chr11 1930034 1930354 -148853199 + (CA)n Simple_repeat Simple_repeat 1 321 0 495 269 0 0 chr11 1930401 1930721 -148852832 + (CA)n Simple_repeat Simple_repeat 1 320 0 799 252 91 7 chr11 1931195 1931481 -148852072 + L1ME1 LINE L1 4885 5194 -952 331 155 0 0 chr11 1931481 1931539 -148852014 + AluJo SINE Alu 40 97 -205 2669 172 61 33 chr11 1931539 1932114 -148851439 + LTR59 LTR ERV1 1 591 -6 1129 174 10 0 chr11 1932114 1932310 -148851243 + AluJo SINE Alu 94 291 -21 2370 56 45 0 chr11 1932322 1932608 -148850945 + AluY SINE Alu 1 299 -12 1290 273 124 52 chr11 1932612 1932711 -148850842 + L1ME1 LINE L1 5186 5276 -890 2147 111 3 19 chr11 1932711 1933018 -148850535 + AluSg SINE Alu 1 302 -8 1290 273 124 52 chr11 1933018 1933831 -148849722 + L1ME1 LINE L1 5276 6161 -5 2030 131 0 3 chr11 1933852 1934135 -148849418 + AluJo SINE Alu 18 299 -13 230 258 65 0 chr11 1934221 1934283 -148849270 - MIR SINE MIR -86 176 111 258 284 27 0 chr11 1935440 1935514 -148848039 - MIR SINE MIR -91 171 96 281 239 15 0 chr11 1936013 1936080 -148847473 + MIR3 SINE MIR 90 157 -51 224 246 35 0 chr11 1936717 1936774 -148846779 + MIR SINE MIR 64 122 -86 641 148 9 0 chr11 1937020 1937128 -148846425 + FRAM SINE Alu 62 170 -6 32 67 0 0 chr11 1937903 1937963 -148845590 + AT_rich Low_complexity Low_complexity 1 60 0 186 43 0 0 chr11 1938661 1938684 -148844869 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 379 335 12 12 chr11 1940384 1940554 -148842999 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 258 32 0 0 chr11 1941767 1941798 -148841755 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 809 291 83 79 chr11 1943359 1943587 -148839966 - L1MC5 LINE L1 -397 7564 7339 483 33 0 0 chr11 1943587 1943648 -148839905 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 809 291 83 79 chr11 1943648 1944411 -148839142 - L1MC5 LINE L1 -622 7339 6555 5173 176 42 64 chr11 1944488 1945316 -148838237 - L1PA16 LINE L1 -5 6161 5316 2545 49 0 55 chr11 1945316 1945642 -148837911 - AluY SINE Alu -3 308 1 5173 176 42 64 chr11 1945642 1945956 -148837597 - L1PA16 LINE L1 -850 5316 4997 412 158 0 0 chr11 1945956 1946032 -148837521 - AluSg/q SINE Alu -2 311 236 1474 125 0 0 chr11 1946032 1946224 -148837329 - AluSg SINE Alu -118 192 1 5173 176 42 64 chr11 1946224 1946885 -148836668 - L1PA16 LINE L1 -1168 4998 4327 2451 71 3 3 chr11 1946885 1947181 -148836372 + AluY SINE Alu 1 296 -15 5173 176 42 64 chr11 1947181 1947650 -148835903 - L1PA16 LINE L1 -1839 4327 3849 353 320 112 44 chr11 1947825 1948209 -148835344 - L1MC4a LINE L1 -1541 6267 5858 677 209 0 0 chr11 1948213 1948347 -148835206 + FLAM_C SINE Alu 2 135 -8 584 295 153 3 chr11 1948347 1948635 -148834918 - L1MC4a LINE L1 -1946 5862 5532 2456 81 3 0 chr11 1948893 1949190 -148834363 - AluSp SINE Alu -15 298 1 1850 149 30 7 chr11 1950845 1951141 -148832412 + MER1B DNA MER1_type 37 339 0 33 94 0 0 chr11 1956962 1957058 -148826495 + GC_rich Low_complexity Low_complexity 1 96 0 34 55 0 0 chr11 1957281 1957336 -148826217 + GC_rich Low_complexity Low_complexity 1 55 0 218 260 16 31 chr11 1957375 1957502 -148826051 + (CCCCG)n Simple_repeat Simple_repeat 5 129 0 327 85 0 0 chr11 1957519 1957566 -148825987 + (CCCCCG)n Simple_repeat Simple_repeat 4 50 0 284 333 23 11 chr11 1957601 1957775 -148825778 + (CCCCG)n Simple_repeat Simple_repeat 2 177 0 589 327 121 32 chr11 1958973 1959319 -148824234 + L1MC5 LINE L1 4877 5253 -893 826 261 46 25 chr11 1959320 1959604 -148823949 + L1MC5 LINE L1 5255 5544 -2264 487 289 58 0 chr11 1959608 1959816 -148823737 + L1MC5 LINE L1 5585 5804 -2004 405 0 0 0 chr11 1959861 1959906 -148823647 + (TG)n Simple_repeat Simple_repeat 2 46 0 265 232 66 60 chr11 1960095 1960246 -148823307 + L1MC5 LINE L1 6877 7028 -933 2157 109 3 0 chr11 1960294 1960587 -148822966 + AluSq SINE Alu 1 294 -19 184 232 36 0 chr11 1960602 1960658 -148822895 + L3 LINE CR1 588 645 -932 198 71 0 0 chr11 1961507 1961535 -148822018 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 214 274 32 0 chr11 1961538 1961600 -148821953 - L2 LINE L2 -14 3258 3195 5638 120 15 3 chr11 1961953 1963607 -148819946 - L1PA16 LINE L1 -16 6150 4477 1897 157 0 7 chr11 1963607 1963900 -148819653 - AluJb SINE Alu -21 291 1 5638 120 15 3 chr11 1963900 1963975 -148819578 - L1PA16 LINE L1 -1689 4477 4404 1773 185 15 10 chr11 1963978 1964373 -148819180 - L1 LINE L1 -2041 4105 3709 882 206 0 0 chr11 1966477 1966793 -148816760 + (TGGA)n Simple_repeat Simple_repeat 1 316 0 223 220 0 37 chr11 1966820 1966929 -148816624 + (TGGG)n Simple_repeat Simple_repeat 2 106 0 271 182 55 0 chr11 1967123 1967178 -148816375 + L2 LINE L2 3200 3257 -15 762 176 7 22 chr11 1967183 1967319 -148816234 + AluJo SINE Alu 1 134 -178 202 56 19 93 chr11 1967539 1967593 -148815960 + (CA)n Simple_repeat Simple_repeat 1 50 0 323 194 0 58 chr11 1967648 1967839 -148815714 + (CA)n Simple_repeat Simple_repeat 1 180 0 199 187 0 27 chr11 1967872 1967947 -148815606 + (CA)n Simple_repeat Simple_repeat 2 74 0 370 212 6 71 chr11 1968011 1968542 -148815011 + (CA)n Simple_repeat Simple_repeat 1 496 0 438 350 147 3 chr11 1970307 1970647 -148812906 - L2 LINE L2 0 3313 2925 906 164 0 4 chr11 1971331 1971832 -148811721 + (CCA)n Simple_repeat Simple_repeat 2 676 0 744 127 19 45 chr11 1971843 1972005 -148811548 - THE1C LTR MaLR -22 435 195 237 311 27 54 chr11 1972039 1972187 -148811366 - L2 LINE L2 -460 2854 2711 946 130 120 29 chr11 1972311 1972519 -148811034 - THE1C LTR MaLR -148 227 1 375 169 0 56 chr11 1972530 1972672 -148810881 + (CACCAT)n Simple_repeat Simple_repeat 1 134 0 498 192 6 34 chr11 1972699 1973037 -148810516 + (CACCAT)n Simple_repeat Simple_repeat 1 328 0 757 180 6 6 chr11 1973083 1973261 -148810292 + (CCA)n Simple_repeat Simple_repeat 3 180 0 300 296 12 0 chr11 1973262 1973343 -148810210 + (CACCAT)n Simple_repeat Simple_repeat 5 86 0 605 216 0 6 chr11 1973343 1973524 -148810029 + (CCA)n Simple_repeat Simple_repeat 1 180 0 278 244 0 26 chr11 1973541 1973656 -148809897 + (CACCAT)n Simple_repeat Simple_repeat 2 113 0 537 230 0 0 chr11 1973692 1973844 -148809709 + (CCA)n Simple_repeat Simple_repeat 2 153 0 209 307 183 7 chr11 1974066 1974219 -148809334 - MIR SINE MIR -70 192 13 294 303 67 0 chr11 1975523 1975642 -148807911 - MIR SINE MIR -59 149 23 657 271 140 17 chr11 1976759 1977117 -148806436 + MLT1C LTR MaLR 59 460 -7 799 216 104 78 chr11 1977489 1977873 -148805680 - MLT1C LTR MaLR -39 428 35 213 281 56 0 chr11 1979636 1979725 -148803828 - MIR3 SINE MIR -53 155 62 182 228 101 51 chr11 1980866 1980945 -148802608 + MIR SINE MIR 52 134 -74 2003 114 0 48 chr11 1982642 1982957 -148800596 - AluSx SINE Alu -12 300 1 2238 87 0 13 chr11 1984798 1985107 -148798446 - AluY SINE Alu 0 311 7 922 253 139 21 chr11 1985111 1985443 -148798110 - L1MB7 LINE L1 -66 6118 5748 25 31 0 0 chr11 1987576 1987608 -148795945 + GC_rich Low_complexity Low_complexity 1 32 0 957 177 6 0 chr11 1990221 1990385 -148793168 + AluJb SINE Alu 140 304 -8 205 241 24 48 chr11 1990404 1990487 -148793066 + MIR SINE MIR 42 122 -86 180 219 49 0 chr11 1991943 1991984 -148791569 + L2 LINE L2 3269 3311 -2 234 237 17 0 chr11 1994191 1994250 -148789303 + MER81 DNA DNA 53 112 -2 277 250 75 67 chr11 2000879 2000999 -148782554 - MIR SINE MIR -65 143 23 3844 147 165 23 chr11 2003676 2003850 -148779703 + MER4D LTR ERV1 3 151 -752 1666 140 57 18 chr11 2003850 2004129 -148779424 + AluSq SINE Alu 6 295 -18 3844 147 165 23 chr11 2004129 2004743 -148778810 + MER4D LTR ERV1 151 903 0 210 125 16 31 chr11 2011152 2011216 -148772337 + CT-rich Low_complexity Low_complexity 3 65 0 537 256 62 17 chr11 2012122 2012298 -148771255 - MER53 DNA DNA 0 189 6 181 264 38 0 chr11 2012920 2012973 -148770580 + L2 LINE L2 3189 3243 -29 1092 132 0 0 chr11 2014072 2014231 -148769322 + FRAM SINE Alu 1 159 -17 303 316 26 8 chr11 2014976 2015093 -148768460 + MIR SINE MIR 46 164 -98 1266 269 43 38 chr11 2015979 2016579 -148766974 + L1ME2 LINE L1 5254 5853 -311 509 213 19 0 chr11 2016983 2017091 -148766462 + L1MA10 LINE L1 6223 6332 -2 295 168 15 128 chr11 2017739 2017935 -148765618 + (CACCC)n Simple_repeat Simple_repeat 3 176 0 185 333 14 0 chr11 2021497 2021566 -148761987 - MIR SINE MIR -109 153 84 243 213 0 0 chr11 2021818 2021893 -148761660 + (TG)n Simple_repeat Simple_repeat 1 75 0 283 261 7 25 chr11 2022800 2023079 -148760474 + C-rich Low_complexity Low_complexity 1 273 0 233 174 26 70 chr11 2024733 2024848 -148758705 + (CGGG)n Simple_repeat Simple_repeat 3 112 0 22 70 0 0 chr11 2024868 2024911 -148758642 + GC_rich Low_complexity Low_complexity 1 43 0 204 183 50 0 chr11 2025018 2025078 -148758475 + C-rich Low_complexity Low_complexity 2 64 0 198 152 136 91 chr11 2025336 2025402 -148758151 - L2 LINE L2 -177 3095 3027 662 286 130 0 chr11 2026001 2026186 -148757367 + MER3 DNA MER1_type 1 209 0 417 280 57 96 chr11 2026653 2026985 -148756568 - L2 LINE L2 -1 3271 2953 576 219 41 0 chr11 2027995 2028141 -148755412 - MER89 LTR ERV1 -1 558 407 5689 203 27 33 chr11 2028164 2028544 -148755009 + L1MB7 LINE L1 3830 4211 -1973 1936 178 36 22 chr11 2028544 2028904 -148754649 + MLT1A1 LTR MaLR 1 365 0 5689 203 27 33 chr11 2028904 2029537 -148754016 + L1MB7 LINE L1 4211 4846 -1338 872 80 0 0 chr11 2029537 2029649 -148753904 - HY1 scRNA scRNA 0 112 1 5689 203 27 33 chr11 2029649 2029848 -148753705 + L1MB7 LINE L1 4846 5045 -1139 2353 103 0 0 chr11 2029848 2030160 -148753393 + AluSx SINE Alu 1 312 0 5689 203 27 33 chr11 2030160 2030774 -148752779 + L1MB7 LINE L1 5045 5661 -523 414 0 0 0 chr11 2030774 2030820 -148752733 + (TG)n Simple_repeat Simple_repeat 2 47 0 5689 203 27 33 chr11 2030820 2030886 -148752667 + L1MB7 LINE L1 5661 5726 -458 1987 130 0 3 chr11 2030886 2031199 -148752354 - AluSx SINE Alu 0 312 1 5689 203 27 33 chr11 2031199 2031663 -148751890 + L1MB7 LINE L1 5726 6173 -11 2250 87 0 3 chr11 2031678 2031978 -148751575 + AluY SINE Alu 1 299 -12 342 271 92 28 chr11 2032005 2032223 -148751330 - MER89 LTR ERV1 -146 413 182 245 279 0 0 chr11 2032231 2032292 -148751261 - MER89 LTR ERV1 -497 62 2 246 308 132 0 chr11 2032749 2032931 -148750622 - L2 LINE L2 -553 2761 2556 330 270 78 26 chr11 2036062 2036177 -148747376 + L2 LINE L2 3191 3311 -2 764 262 161 0 chr11 2036745 2036993 -148746560 + MSTD LTR MaLR 108 395 -1 609 209 54 106 chr11 2036998 2037036 -148746517 + MER39 LTR ERV1 412 450 -115 2552 124 72 10 chr11 2037036 2037439 -148746114 + MSTA LTR MaLR 1 428 0 609 209 54 106 chr11 2037439 2037541 -148746012 + MER39 LTR ERV1 450 412 -153 2002 110 4 4 chr11 2037541 2037822 -148745731 - AluSx SINE Alu -2 310 30 609 209 54 106 chr11 2037822 2037964 -148745589 + MER39 LTR ERV1 411 559 -6 1304 221 67 38 chr11 2038576 2038996 -148744557 + MLT1C LTR MaLR 36 467 0 534 295 68 31 chr11 2039369 2039694 -148743859 - LTR16A LTR ERVL -27 423 87 1014 126 0 0 chr11 2039782 2039851 -148743702 + (CAGA)n Simple_repeat Simple_repeat 1 236 0 1014 126 0 0 chr11 2039851 2040018 -148743535 + (CAGA)n Simple_repeat Simple_repeat 2 168 0 447 52 0 0 chr11 2040137 2040195 -148743358 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 2340 160 59 30 chr11 2040197 2040691 -148742862 - MLT2B3 LTR ERVL -46 508 1 23866 202 44 31 chr11 2040691 2041268 -148742285 - ERVL-B3 LTR ERVL -7 5757 5189 2478 58 0 3 chr11 2041268 2041579 -148741974 - AluY SINE Alu -1 310 1 23866 202 44 31 chr11 2041579 2043435 -148740118 - ERVL-B3 LTR ERVL -575 5189 3358 2061 111 3 0 chr11 2043435 2043724 -148739829 - AluSx SINE Alu 0 312 23 23866 202 44 31 chr11 2043724 2045679 -148737874 - ERVL-B3 LTR ERVL -2406 3358 1278 3638 133 9 6 chr11 2045679 2046204 -148737349 - MER1A DNA MER1_type 0 527 1 23866 202 44 31 chr11 2046204 2047497 -148736056 - ERVL-B3 LTR ERVL -4486 1278 3 225 163 0 0 chr11 2047502 2047545 -148736008 - ERVL-B3 LTR ERVL -7 513 471 2308 86 0 3 chr11 2047551 2047853 -148735700 + AluSc SINE Alu 1 301 -8 1583 186 32 74 chr11 2047880 2048283 -148735270 - MLT2B3 LTR ERVL -39 515 130 584 204 8 54 chr11 2048283 2048312 -148735241 + MLT1A1 LTR MaLR 1 30 -335 1894 114 48 14 chr11 2048312 2048602 -148734951 - AluSx SINE Alu -12 300 1 584 204 8 54 chr11 2048602 2048763 -148734790 + MLT1A1 LTR MaLR 30 182 -183 482 249 29 23 chr11 2048804 2048977 -148734576 + MLT1A1 LTR MaLR 192 365 0 5513 236 63 44 chr11 2048996 2049193 -148734360 + MSTC-int LTR MaLR 20 212 -1523 2417 57 0 0 chr11 2049193 2049489 -148734064 + AluY SINE Alu 1 296 -15 5513 236 63 44 chr11 2049489 2050975 -148732578 + MSTC-int LTR MaLR 212 1735 0 986 211 133 58 chr11 2050975 2051373 -148732180 + MSTC LTR MaLR 1 428 0 326 137 0 0 chr11 2051373 2051424 -148732129 - MLT2B3 LTR ERVL -424 130 80 2170 153 112 5 chr11 2051424 2051809 -148731744 - MSTB LTR MaLR 0 426 1 10023 169 10 9 chr11 2051809 2053458 -148730095 - MSTB-int LTR MaLR 0 1651 1 1635 168 47 0 chr11 2053499 2053796 -148729757 + AluSx SINE Alu 1 311 -1 968 190 36 0 chr11 2053601 2053797 -148729756 + AluSg/x SINE Alu 110 367 0 323 73 18 18 chr11 2053797 2053852 -148729701 + (GAAAA)n Simple_repeat Simple_repeat 3 180 0 1314 132 83 61 chr11 2053852 2054228 -148729325 - MSTB LTR MaLR -27 401 1 548 92 0 0 chr11 2054228 2054312 -148729241 - MLT2B3 LTR ERVL -470 84 1 2453 161 14 45 chr11 2054313 2054828 -148728725 + MLT2B3 LTR ERVL 55 553 -1 275 367 44 39 chr11 2054883 2055452 -148728101 - HERVL LTR ERVL -342 5312 4741 459 383 27 6 chr11 2055861 2056198 -148727355 - HERVL LTR ERVL -1385 4269 3926 618 217 22 7 chr11 2056403 2056541 -148727012 - MLT2B1 LTR ERVL -50 470 331 2138 141 39 0 chr11 2056590 2056974 -148726579 + MSTB1 LTR MaLR 34 432 0 1026 213 17 0 chr11 2056974 2057202 -148726351 - MLT2B1 LTR ERVL -288 232 1 1775 292 86 15 chr11 2057241 2057841 -148725712 - HERVL LTR ERVL -2639 2357 1696 2297 156 34 3 chr11 2057841 2058219 -148725334 - MLT1B LTR MaLR 0 390 1 1775 292 86 15 chr11 2058219 2058340 -148725213 - HERVL LTR ERVL -3300 1696 1585 953 152 25 15 chr11 2058397 2058592 -148724961 - THE1C LTR MaLR 0 375 178 854 106 194 12 chr11 2058593 2058763 -148724790 + MSTA LTR MaLR 228 428 0 1123 158 0 0 chr11 2058764 2058929 -148724624 + FRAM SINE Alu 2 166 0 1275 181 39 11 chr11 2058931 2059213 -148724340 + MLT1B LTR MaLR 98 387 -3 593 185 86 0 chr11 2059561 2059712 -148723841 + MLT2B2 LTR ERVL 1 164 -351 2823 94 163 16 chr11 2059713 2060265 -148723288 - LTR10E LTR ERV1 0 633 1 2816 247 9 9 chr11 2060421 2061180 -148722373 - LTR10E-int LTR ERV1 -738 5911 3345 4449 128 33 27 chr11 2061242 2062062 -148721491 - LTR10E-int LTR ERV1 -3912 2984 2160 277 244 39 13 chr11 2062066 2062144 -148721409 + LTR8 LTR ERV1 156 235 -456 981 35 0 7 chr11 2062144 2062287 -148721266 - Harlequin LTR ERV1 -5168 1728 1587 4141 51 7 28 chr11 2062288 2062515 -148721038 - LTR10C LTR ERV1 0 591 361 3514 57 2 13 chr11 2062515 2062968 -148720585 - LTR7 LTR ERV1 -2 448 1 4141 51 7 28 chr11 2062968 2063086 -148720467 - LTR10C LTR ERV1 -230 361 242 1368 199 102 60 chr11 2063086 2063518 -148720035 + LTR7 LTR ERV1 1 450 0 4141 51 7 28 chr11 2063518 2063775 -148719778 - LTR10C LTR ERV1 -349 242 1 3378 172 46 54 chr11 2063775 2064684 -148718869 - LTR10E-int LTR ERV1 -3397 4388 953 723 260 0 6 chr11 2064665 2064846 -148718707 - LTR10E-int LTR ERV1 -4468 3317 3138 * 1219 165 93 8 chr11 2064837 2065277 -148718276 - LTR10E-int LTR ERV1 -3955 2694 840 999 234 55 64 chr11 2065495 2066028 -148717525 - LTR10E-int LTR ERV1 -6335 314 3 2310 107 153 20 chr11 2066046 2066504 -148717049 - LTR10E LTR ERV1 -43 590 72 511 73 0 12 chr11 2067165 2067247 -148716306 - LTR10E LTR ERV1 -549 84 4 924 292 111 37 chr11 2067260 2067692 -148715861 + L1M4 LINE L1 4408 4871 -1275 2074 112 3 0 chr11 2067693 2068002 -148715551 + AluSg SINE Alu 1 310 0 6346 62 16 73 chr11 2068796 2070504 -148713049 - SVA Other Other -683 1386 57 387 41 0 0 chr11 2070504 2070553 -148713000 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 993 229 121 36 chr11 2070574 2070625 -148712928 + MLT2B1 LTR ERVL 160 205 -315 2092 161 83 14 chr11 2070625 2071046 -148712507 + LTR7 LTR ERV1 1 450 0 993 229 121 36 chr11 2071046 2071326 -148712227 + MLT2B1 LTR ERVL 205 519 -1 224 311 0 0 chr11 2071718 2071792 -148711761 + L2 LINE L2 1000 1073 -2241 1812 137 0 0 chr11 2071810 2072072 -148711481 - AluSx SINE Alu -10 302 41 246 217 0 0 chr11 2072076 2072122 -148711431 + MSTD LTR MaLR 224 269 -127 289 136 0 0 chr11 2072130 2072174 -148711379 - AluSx SINE Alu -258 44 1 665 224 61 0 chr11 2072185 2072332 -148711221 - MER5A DNA MER1_type -26 163 8 470 208 42 76 chr11 2072478 2072622 -148710931 - MLT1J2 LTR MaLR -292 158 20 240 234 16 31 chr11 2073011 2073075 -148710478 - MLT1I LTR MaLR 0 409 347 1294 200 134 45 chr11 2073567 2073902 -148709651 + MLT1A1 LTR MaLR 1 365 0 3851 246 77 44 chr11 2073902 2074476 -148709077 + MLT1A1-int LTR MaLR 1 554 -1097 1579 57 0 0 chr11 2074476 2074670 -148708883 + L1PA4 LINE L1 5962 6155 0 3851 246 77 44 chr11 2074670 2075491 -148708062 + MLT1A1-int LTR MaLR 554 1446 -205 7050 180 66 19 chr11 2075491 2075892 -148707661 - ERVL LTR ERVL -2012 3752 3371 2157 132 50 19 chr11 2075892 2076256 -148707297 + THE1C LTR MaLR 1 375 0 7050 180 66 19 chr11 2076256 2077351 -148706202 - ERVL LTR ERVL -2393 3371 2185 2596 165 66 23 chr11 2077351 2077474 -148706079 + Tigger3b DNA MER2_type 1 117 -2911 2944 88 0 3 chr11 2077474 2077850 -148705703 - THE1C LTR MaLR 0 375 1 2596 165 66 23 chr11 2077850 2078290 -148705263 + Tigger3b DNA MER2_type 117 588 -643 7763 116 10 9 chr11 2078296 2080463 -148703090 - L1PA11 LINE L1 -21 6153 3979 767 100 0 27 chr11 2080463 2080573 -148702980 - U6 snRNA snRNA 0 107 1 201 40 0 100 chr11 2082616 2082666 -148700887 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 315 0 0 0 chr11 2082669 2082689 -148700864 + (CA)n Simple_repeat Simple_repeat 1 55 0 315 0 0 0 chr11 2082689 2082724 -148700829 + (CA)n Simple_repeat Simple_repeat 2 36 0 1159 128 0 0 chr11 2082743 2082907 -148700646 - AluSg/x SINE Alu -15 297 134 2065 111 0 20 chr11 2082907 2083236 -148700317 - AluSq SINE Alu 0 313 1 1732 142 4 25 chr11 2083238 2083519 -148700034 - AluJo SINE Alu -16 296 22 2067 157 23 0 chr11 2083847 2084190 -148699363 + L1MB3 LINE L1 5826 6176 -7 833 270 34 0 chr11 2084242 2084505 -148699048 + MLT1E2 LTR MaLR 355 626 0 211 273 0 0 chr11 2087079 2087134 -148696419 + G-rich Low_complexity Low_complexity 5 59 0 902 114 0 50 chr11 2088113 2088253 -148695300 - FLAM_C SINE Alu 0 133 1 318 265 128 0 chr11 2088253 2088355 -148695198 + MER45A DNA AcHobo 64 178 0 206 269 64 13 chr11 2089308 2089386 -148694167 + L2 LINE L2 2981 3062 -210 307 128 58 0 chr11 2090202 2090288 -148693265 + (CCCTG)n Simple_repeat Simple_repeat 4 94 0 323 179 0 0 chr11 2091597 2091653 -148691900 - MIR SINE MIR -63 145 90 549 164 0 53 chr11 2095217 2095406 -148688147 + CT-rich Low_complexity Low_complexity 1 179 0 466 209 11 33 chr11 2095388 2095570 -148687983 + C-rich Low_complexity Low_complexity 1 178 0 * 288 77 0 0 chr11 2095707 2095746 -148687807 + (TC)n Simple_repeat Simple_repeat 1 39 0 423 165 0 0 chr11 2096219 2096304 -148687249 + (CA)n Simple_repeat Simple_repeat 2 86 0 240 111 0 0 chr11 2100148 2100184 -148683369 + (TCCCC)n Simple_repeat Simple_repeat 2 37 0 220 324 23 17 chr11 2101924 2102100 -148681453 + (CCCCG)n Simple_repeat Simple_repeat 2 178 0 * 488 231 29 0 chr11 2101992 2102216 -148681337 + (CACCC)n Simple_repeat Simple_repeat 1 230 0 206 222 99 0 chr11 2102407 2102488 -148681065 + (CATG)n Simple_repeat Simple_repeat 4 92 0 1414 204 33 84 chr11 2104165 2104558 -148678995 + MLT1A2 LTR MaLR 2 374 0 228 67 0 0 chr11 2104566 2104596 -148678957 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2710 262 58 8 chr11 2105646 2106372 -148677181 + ERVL LTR ERVL 1823 2584 -3180 1959 169 66 3 chr11 2106382 2106761 -148676792 - L1MC2 LINE L1 -14 6330 5928 1977 248 71 8 chr11 2106816 2107308 -148676245 + ERVL LTR ERVL 3066 3588 -2176 1470 254 32 28 chr11 2107292 2107729 -148675824 + ERVL LTR ERVL 3795 4233 -1531 * 2449 298 70 18 chr11 2107940 2108942 -148674611 + ERVL LTR ERVL 4516 5569 -195 2275 95 20 0 chr11 2108942 2109248 -148674305 + AluSx SINE Alu 1 312 0 21 0 0 0 chr11 2109315 2109336 -148674217 + AT_rich Low_complexity Low_complexity 1 21 0 275 302 32 8 chr11 2109365 2109491 -148674062 + ERVL LTR ERVL 5590 5718 -46 481 188 52 155 chr11 2109513 2109726 -148673827 + L1MB7 LINE L1 5913 6103 -75 599 155 10 0 chr11 2110780 2110883 -148672670 + L1MB7 LINE L1 6070 6173 -11 1629 181 22 16 chr11 2111838 2112158 -148671395 - L1MB3 LINE L1 0 6183 5862 226 291 58 0 chr11 2112227 2112313 -148671240 + L2 LINE L2 2615 2705 -609 2340 68 0 0 chr11 2112454 2112747 -148670806 + AluY SINE Alu 1 293 -18 258 288 7 14 chr11 2112767 2112913 -148670640 + (TG)n Simple_repeat Simple_repeat 1 145 0 401 252 49 0 chr11 2113361 2113484 -148670069 - L1MC4 LINE L1 0 8042 7914 739 341 41 0 chr11 2113516 2113885 -148669668 - L1MEc LINE L1 -5454 942 559 399 264 41 8 chr11 2113928 2114049 -148669504 - L1MEc LINE L1 -5915 481 357 504 209 17 0 chr11 2114051 2114223 -148669330 + CT-rich Low_complexity Low_complexity 2 176 0 268 298 26 0 chr11 2114256 2114370 -148669183 - L1MEc LINE L1 -6012 384 268 747 233 142 0 chr11 2114570 2114810 -148668743 - L1MC4a LINE L1 -500 7308 7035 8298 58 2 5 chr11 2114914 2115923 -148667630 + LTR13 LTR ERVK 2 1007 0 1476 184 32 0 chr11 2116142 2116420 -148667133 + AluJo SINE Alu 1 287 -25 287 347 150 16 chr11 2116677 2117063 -148666490 + HAL1 LINE L1 1227 1664 -843 239 327 36 42 chr11 2117103 2117268 -148666285 - L1M4 LINE L1 -1452 4694 4531 333 350 38 25 chr11 2117368 2117528 -148666025 + L1 LINE L1 4685 4846 -1300 817 194 0 48 chr11 2117539 2117704 -148665849 + AluJo SINE Alu 126 282 -30 274 107 53 13 chr11 2117720 2117795 -148665758 + (TA)n Simple_repeat Simple_repeat 2 79 0 6439 249 80 12 chr11 2117967 2120176 -148663377 - L1MEc LINE L1 -1493 4722 2364 629 219 29 7 chr11 2120190 2120327 -148663226 - MLT1F1 LTR MaLR -9 558 419 1101 161 8 42 chr11 2120328 2120564 -148662989 + MER96B DNA MER1_type? 190 417 0 3105 243 45 52 chr11 2120614 2121519 -148662034 - L1MEc LINE L1 -4002 2394 1485 2810 155 73 2 chr11 2121519 2122023 -148661530 - L1MB3 LINE L1 -1 6182 5643 3105 243 45 52 chr11 2122023 2122079 -148661474 - L1MEc LINE L1 -4911 1485 1430 207 100 0 0 chr11 2122079 2122109 -148661444 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 3105 243 45 52 chr11 2122109 2122145 -148661408 - L1MEc LINE L1 -4966 1430 1395 1993 125 3 0 chr11 2122145 2122433 -148661120 + AluSp SINE Alu 22 310 -3 3105 243 45 52 chr11 2122433 2122806 -148660747 - L1MEc LINE L1 -5001 1395 1031 2319 277 67 26 chr11 2123057 2123981 -148659572 - L1MEc LINE L1 -5413 983 22 189 248 99 30 chr11 2124383 2124484 -148659069 - MIR3 SINE MIR -18 190 83 251 301 29 19 chr11 2124679 2124782 -148658771 + MIR SINE MIR 43 146 -62 2064 197 84 12 chr11 2124801 2125313 -148658240 - MER74A LTR ERVL -2 556 8 905 202 37 24 chr11 2125348 2125618 -148657935 + MER33 DNA MER1_type 2 325 -38 182 163 70 0 chr11 2126207 2126250 -148657303 - L2 LINE L2 -211 3061 3016 483 241 0 19 chr11 2126657 2126765 -148656788 + MER58B DNA MER1_type 6 111 -230 1307 162 5 0 chr11 2126806 2127028 -148656525 + AluSg/x SINE Alu 85 307 -5 3430 209 20 7 chr11 2127030 2127727 -148655826 + L1MB3 LINE L1 5476 6181 -2 453 262 152 5 chr11 2127732 2127923 -148655630 + MER58B DNA MER1_type 123 341 0 1411 232 135 18 chr11 2128029 2128465 -148655088 - L1MB7 LINE L1 -9 6970 6484 242 241 89 13 chr11 2129070 2129149 -148654404 + MLT1H1 LTR MaLR 466 550 -5 207 325 0 0 chr11 2131093 2131176 -148652377 + G-rich Low_complexity Low_complexity 6 88 0 21 0 0 0 chr11 2132488 2132509 -148651044 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 2132603 2132644 -148650909 + GC_rich Low_complexity Low_complexity 1 41 0 281 338 157 12 chr11 2134952 2135372 -148648181 - L1MC5 LINE L1 -130 7831 7351 592 309 98 21 chr11 2135455 2135740 -148647813 + LTR16B LTR ERVL 144 450 -14 1230 101 62 0 chr11 2135968 2136147 -148647406 - MER107 DNA MER1_type 0 197 8 2740 231 66 71 chr11 2136452 2137287 -148646266 - MER45B DNA AcHobo -624 957 126 834 139 8 0 chr11 2137287 2137416 -148646137 + FLAM_C SINE Alu 1 130 -3 2740 231 66 71 chr11 2137416 2137518 -148646035 - MER45B DNA AcHobo -1455 126 25 1144 180 70 22 chr11 2139276 2139556 -148643997 - MLT1B LTR MaLR -4 370 60 250 253 81 20 chr11 2141210 2141309 -148642244 - MIR SINE MIR -114 148 44 334 320 53 53 chr11 2142674 2142918 -148640635 - L1ME3 LINE L1 -32 6130 5887 303 179 0 45 chr11 2143426 2143493 -148640060 + L1PA11 LINE L1 6109 6172 -2 2588 36 0 0 chr11 2143785 2144093 -148639460 - AluY SINE Alu -3 308 1 397 240 6 6 chr11 2144836 2145007 -148638546 + (CA)n Simple_repeat Simple_repeat 2 172 0 242 274 78 0 chr11 2145174 2145276 -148638277 - L1MB7 LINE L1 -774 6365 6256 987 212 31 16 chr11 2145381 2145717 -148637836 - L1MB7 LINE L1 -746 6195 5884 424 196 55 8 chr11 2145724 2145893 -148637660 + MER20 DNA MER1_type 7 219 0 2705 234 66 57 chr11 2145898 2146854 -148636699 - L1MB7 LINE L1 -1070 5871 4902 2361 44 14 14 chr11 2146854 2147151 -148636402 + AluY SINE Alu 3 299 -12 2705 234 66 57 chr11 2147151 2147351 -148636202 - L1MB7 LINE L1 -2039 4902 4705 * 3008 263 50 46 chr11 2147335 2147699 -148635854 - L1MB7 LINE L1 -3644 3297 2936 916 205 0 6 chr11 2147699 2147860 -148635693 - FRAM SINE Alu -6 160 1 3008 263 50 46 chr11 2147860 2148704 -148634849 - L1MB7 LINE L1 -4005 2936 2097 2032 89 64 0 chr11 2148704 2148985 -148634568 + AluSq SINE Alu 1 299 -14 3008 263 50 46 chr11 2148985 2149507 -148634046 - L1MB7 LINE L1 -4844 2097 1579 1671 176 3 22 chr11 2149507 2149820 -148633733 - AluJo SINE Alu -5 307 1 3008 263 50 46 chr11 2149820 2149861 -148633692 - L1MB7 LINE L1 -5362 1579 1540 2200 67 3 3 chr11 2149861 2150187 -148633366 - AluSc SINE Alu 0 326 1 3008 263 50 46 chr11 2150187 2150644 -148632909 - L1MB7 LINE L1 -5401 1540 865 606 290 90 33 chr11 2150915 2151280 -148632273 - L1MCc LINE L1 -6014 409 24 259 232 18 0 chr11 2152304 2152360 -148631193 - LTR16A1 LTR ERVL -2 455 399 425 297 148 5 chr11 2152403 2152605 -148630948 - LTR16A1 LTR ERVL -225 232 2 773 371 59 19 chr11 2153161 2153834 -148629719 - HERVL LTR ERVL -1821 3833 3134 1196 303 27 13 chr11 2153847 2154220 -148629333 - HERVL LTR ERVL -2127 2869 2492 497 302 40 31 chr11 2154244 2154466 -148629087 - HERVL LTR ERVL -3228 2536 2313 2769 233 42 50 chr11 2154468 2154534 -148629019 - L1ME1 LINE L1 -5 6144 6079 2169 112 3 6 chr11 2154534 2154847 -148628706 - AluSx SINE Alu 0 312 1 2769 233 42 50 chr11 2154847 2156606 -148626947 - L1ME1 LINE L1 -70 6079 4327 910 245 121 13 chr11 2156610 2156924 -148626629 - L1ME1 LINE L1 -1887 4242 3895 633 270 23 0 chr11 2156930 2157094 -148626459 + MLT2D LTR ERVL 1 168 -246 950 171 77 13 chr11 2157094 2157425 -148626128 - MSTB1 LTR MaLR 0 457 8 1510 118 41 0 chr11 2157425 2157646 -148625907 + MER30 DNA MER1_type 1 230 0 646 236 99 17 chr11 2157655 2157846 -148625707 + MLT2D LTR ERVL 163 378 -36 312 27 0 0 chr11 2157846 2157883 -148625670 + (CA)n Simple_repeat Simple_repeat 1 37 0 646 236 99 17 chr11 2157883 2157924 -148625629 + MLT2D LTR ERVL 378 414 0 1604 259 44 16 chr11 2157932 2158638 -148624915 - L1ME1 LINE L1 -2240 3889 3164 264 252 9 28 chr11 2162898 2163005 -148620548 + (GGGTG)n Simple_repeat Simple_repeat 2 106 0 300 231 51 0 chr11 2265604 2265682 -148517871 + AluJ/FRAM SINE Alu 217 298 -4 2127 127 3 0 chr11 2265687 2265994 -148517559 + AluSp SINE Alu 2 309 -4 231 62 0 62 chr11 2265994 2266042 -148517511 - L1MC/D LINE L1 -478 5855 5811 262 305 169 17 chr11 2266069 2266364 -148517189 - L1ME1 LINE L1 -4880 1239 900 2304 88 0 22 chr11 2266385 2266705 -148516848 - AluSq SINE Alu 0 313 1 227 277 72 0 chr11 2266827 2266910 -148516643 + L2 LINE L2 3225 3313 0 285 348 85 20 chr11 2267013 2267318 -148516235 - L1ME1 LINE L1 -5581 538 214 240 195 11 46 chr11 2267327 2267414 -148516139 + CT-rich Low_complexity Low_complexity 3 86 0 943 183 9 163 chr11 2267537 2267886 -148515667 - MER82 DNA MER2_type -314 339 45 2244 97 0 25 chr11 2267995 2268314 -148515239 - AluSx SINE Alu -1 311 1 316 377 47 19 chr11 2268421 2268687 -148514866 - L1M4c LINE L1 -2946 3436 2258 1716 186 0 7 chr11 2268711 2269018 -148514535 + AluJb SINE Alu 1 305 -7 1707 119 43 61 chr11 2269054 2269399 -148514154 + THE1C LTR MaLR 1 339 -36 465 133 0 0 chr11 2269399 2269474 -148514079 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 304 246 100 9 chr11 2269596 2269706 -148513847 - MIR SINE MIR -58 150 31 187 294 59 0 chr11 2270368 2270419 -148513134 - L2 LINE L2 -608 2706 2653 816 196 0 0 chr11 2270524 2270703 -148512850 + (CAT)n Simple_repeat Simple_repeat 1 179 0 383 146 0 0 chr11 2270703 2270758 -148512795 + (CCA)n Simple_repeat Simple_repeat 3 57 0 990 176 0 0 chr11 2270758 2271087 -148512466 + (CAT)n Simple_repeat Simple_repeat 1 329 0 210 250 9 18 chr11 2271464 2271576 -148511977 + G-rich Low_complexity Low_complexity 2 112 0 263 313 0 30 chr11 2271576 2271675 -148511878 + GA-rich Low_complexity Low_complexity 4 99 0 2877 89 91 0 chr11 2272595 2273012 -148510541 + L1PA13 LINE L1 5708 6162 -1 385 181 0 36 chr11 2273047 2273130 -148510423 - L1M3 LINE L1 -469 5714 5635 1097 110 7 0 chr11 2273281 2273436 -148510117 - AluSq SINE Alu -157 156 1 282 136 153 0 chr11 2273436 2273495 -148510058 - L1MA8 LINE L1 -185 6106 6039 245 167 0 0 chr11 2273496 2273550 -148510003 - L1M3 LINE L1 -537 5646 5593 933 72 8 0 chr11 2273591 2273716 -148509837 + AluSp/q SINE Alu 188 313 0 4915 155 38 21 chr11 2273721 2273901 -148509652 - L1MA8 LINE L1 -10 6281 6105 1954 109 38 0 chr11 2273901 2274194 -148509359 - AluSx SINE Alu -4 308 5 4915 155 38 21 chr11 2274194 2275177 -148508376 - L1MA8 LINE L1 -186 6105 5106 857 163 59 50 chr11 2275170 2275391 -148508162 - L1M3 LINE L1 -576 5607 5385 * 830 130 0 23 chr11 2275396 2275527 -148508026 - FLAM_C SINE Alu -1 142 15 419 101 0 0 chr11 2275541 2275620 -148507933 - L1M3 LINE L1 -785 5395 5317 447 98 16 0 chr11 2275756 2275817 -148507736 - AluJ/FLAM SINE Alu -238 74 13 910 297 100 96 chr11 2275820 2276023 -148507530 - L1M4 LINE L1 -2849 3297 3096 2387 80 0 0 chr11 2276023 2276323 -148507230 - AluSg SINE Alu -9 301 2 910 297 100 96 chr11 2276323 2276582 -148506971 - L1M4 LINE L1 -3050 3096 2840 1968 139 0 0 chr11 2276582 2276870 -148506683 - AluJo SINE Alu -13 299 12 910 297 100 96 chr11 2276870 2277143 -148506410 - L1M4 LINE L1 -3306 2840 2558 2219 113 0 0 chr11 2277354 2277655 -148505898 - AluSx SINE Alu -6 306 6 2495 171 41 13 chr11 2278142 2278609 -148504944 + L1MA4 LINE L1 5810 6289 -11 8726 42 2 1 chr11 2279674 2280680 -148502873 + LTR13 LTR ERVK 1 1007 0 327 321 66 63 chr11 2282835 2283553 -148500000 + L1MEd LINE L1 704 1457 -4853 2060 116 0 38 chr11 2284859 2285179 -148498374 + AluSx SINE Alu 1 308 -4 1243 216 95 28 chr11 2285237 2285546 -148498007 - MLT1C LTR MaLR -52 415 73 2037 147 0 3 chr11 2285546 2285859 -148497694 + AluJb SINE Alu 1 312 0 1243 216 95 28 chr11 2285859 2285938 -148497615 - MLT1C LTR MaLR -394 73 1 1243 174 89 0 chr11 2286471 2286742 -148496811 - MLT1C LTR MaLR -2 430 170 26 0 0 27 chr11 2286745 2286758 -148496795 + AT_rich Low_complexity Low_complexity 1 13 -23 2234 77 7 0 chr11 2286758 2287045 -148496508 + AluSp SINE Alu 1 289 -24 26 0 0 27 chr11 2287045 2287068 -148496485 + AT_rich Low_complexity Low_complexity 13 36 0 204 40 0 0 chr11 2287071 2287096 -148496457 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 897 162 7 13 chr11 2287098 2287252 -148496301 - FRAM SINE Alu -30 146 1 751 118 77 29 chr11 2287252 2287422 -148496131 - MLT1C LTR MaLR -289 178 1 867 158 0 0 chr11 2287627 2287760 -148495793 - AluSq/x SINE Alu -179 133 1 1633 141 20 0 chr11 2288856 2289111 -148494442 - AluJo SINE Alu -35 277 18 213 218 18 0 chr11 2291429 2291484 -148492069 + (CAGCC)n Simple_repeat Simple_repeat 2 57 0 756 134 0 0 chr11 2294594 2294728 -148488825 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 977 134 6 0 chr11 2294743 2294915 -148488638 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 287 283 0 7 chr11 2296993 2297138 -148486415 + (CA)n Simple_repeat Simple_repeat 1 144 0 198 333 42 21 chr11 2297741 2297837 -148485716 + MIR SINE MIR 47 144 -64 904 224 97 21 chr11 2298013 2298405 -148485148 + MLT1C LTR MaLR 7 466 -1 464 293 67 67 chr11 2299082 2299457 -148484096 - MER113 DNA MER1_type? -83 438 64 660 264 42 10 chr11 2300168 2300379 -148483174 + MIR SINE MIR 42 261 -1 1523 150 24 53 chr11 2301761 2301864 -148481689 + MLT1B LTR MaLR 2 106 -284 995 9 0 0 chr11 2301864 2301995 -148481558 + L1PA5 LINE L1 6028 6158 0 1523 150 24 53 chr11 2301995 2302231 -148481322 + MLT1B LTR MaLR 106 332 -58 2334 94 7 0 chr11 2303624 2303932 -148479621 + AluSg SINE Alu 1 310 0 1694 163 34 3 chr11 2304621 2304915 -148478638 + AluJo SINE Alu 1 303 -9 913 223 35 1 chr11 2307509 2307847 -148475706 + MLT1B LTR MaLR 2 379 -11 244 276 134 39 chr11 2308106 2308233 -148475320 - MIR SINE MIR -103 159 21 229 301 11 21 chr11 2311171 2311264 -148472289 + G-rich Low_complexity Low_complexity 2 93 0 287 268 143 0 chr11 2312039 2312151 -148471402 - L3 LINE CR1 -108 1469 1342 245 316 22 22 chr11 2313960 2314099 -148469454 + L1MC5 LINE L1 5723 5861 -1947 771 111 0 0 chr11 2314119 2314227 -148469326 + AluSg/x SINE Alu 203 310 0 1177 272 68 53 chr11 2314250 2314923 -148468630 + L1MC5 LINE L1 6694 7376 -585 2222 113 7 0 chr11 2315221 2315531 -148468022 + AluSx SINE Alu 1 312 0 287 252 10 29 chr11 2315543 2315646 -148467907 + L1MC5 LINE L1 7701 7801 -160 296 206 17 39 chr11 2315797 2315977 -148467576 + GA-rich Low_complexity Low_complexity 3 178 0 900 205 65 0 chr11 2316719 2316934 -148466619 + L1MC2 LINE L1 6106 6334 -10 415 360 79 9 chr11 2316935 2317163 -148466390 + L1MCa LINE L1 1402 1645 -4781 1468 51 6 0 chr11 2317169 2317345 -148466208 + AluSp SINE Alu 1 177 -136 568 40 0 0 chr11 2317345 2317420 -148466133 + AluSp SINE Alu 228 302 -11 283 191 103 0 chr11 2317747 2317815 -148465738 + MIR SINE MIR 67 141 -121 2386 99 0 0 chr11 2318345 2318657 -148464896 - AluSx SINE Alu 0 312 1 320 308 50 33 chr11 2320004 2320124 -148463429 + MIR3 SINE MIR 58 179 -29 484 276 62 50 chr11 2322659 2323017 -148460536 + MER90 LTR ERV1 227 588 -26 198 0 0 0 chr11 2323464 2323486 -148460067 + (CAGC)n Simple_repeat Simple_repeat 3 24 0 2243 98 3 0 chr11 2325176 2325472 -148458081 - AluSp SINE Alu -16 297 1 1824 115 51 10 chr11 2325482 2325778 -148457775 - AluSx SINE Alu -2 310 3 269 133 0 0 chr11 2326896 2326941 -148456612 + MIR SINE MIR 113 157 -105 496 134 41 21 chr11 2326967 2327064 -148456489 + MER4A LTR ERV1 1 99 -565 1628 125 36 20 chr11 2327064 2327401 -148456152 + MER4A LTR ERV1 262 662 -2 3508 132 173 140 chr11 2327408 2328798 -148454755 + MER4A-int LTR ERV1 1 1435 -5163 1629 163 61 3 chr11 2328926 2329220 -148454333 - AluSx SINE Alu 0 312 2 2098 94 14 0 chr11 2329228 2329514 -148454039 - AluSp SINE Alu -23 290 1 764 185 31 25 chr11 2329537 2329699 -148453854 - FRAM SINE Alu -14 162 1 687 234 234 0 chr11 2329702 2329724 -148453829 + MER82 DNA MER2_type 352 368 -285 228 35 0 0 chr11 2329724 2329753 -148453800 + (CA)n Simple_repeat Simple_repeat 1 29 0 687 234 234 0 chr11 2329753 2329974 -148453579 + MER82 DNA MER2_type 368 652 -1 231 333 0 0 chr11 2329984 2330095 -148453458 + L1MCa LINE L1 2716 2826 -3600 1681 68 0 0 chr11 2330847 2331052 -148452501 + AluSq SINE Alu 1 205 -108 1055 169 34 0 chr11 2331052 2331229 -148452324 + AluSg/x SINE Alu 127 309 -1 186 43 0 0 chr11 2331266 2331289 -148452264 + (A)n Simple_repeat Simple_repeat 1 23 0 3947 183 20 40 chr11 2331291 2331438 -148452115 + L1P LINE L1 4398 4546 -1600 2158 103 0 0 chr11 2331438 2331745 -148451808 - AluSp SINE Alu 0 307 1 3947 183 20 40 chr11 2331745 2331821 -148451732 + L1P LINE L1 4546 4622 -1524 1803 167 10 13 chr11 2331821 2332133 -148451420 + AluJb SINE Alu 1 311 -1 3947 183 20 40 chr11 2332133 2332852 -148450701 + L1P LINE L1 4622 5323 -823 2097 121 3 0 chr11 2332852 2333141 -148450412 + AluSc SINE Alu 1 290 -19 3947 183 20 40 chr11 2333141 2333220 -148450333 + L1P LINE L1 5323 5402 -744 1147 132 44 4 chr11 2333220 2333448 -148450105 + THE1A LTR MaLR 1 237 -118 692 56 0 0 chr11 2333448 2333538 -148450015 + AluSp/q SINE Alu 215 304 -9 953 70 0 0 chr11 2333538 2333666 -148449887 + THE1A LTR MaLR 228 355 0 4817 83 39 0 chr11 2333667 2334387 -148449166 + THE1A-int LTR MaLR 3 750 -830 1342 126 13 4 chr11 2334387 2334617 -148448936 - THE1A LTR MaLR -123 232 1 3184 78 2 0 chr11 2334617 2335064 -148448489 - THE1A-int LTR MaLR 0 1580 1133 193 279 54 78 chr11 2337010 2337139 -148446414 + L2 LINE L2 3123 3248 -24 399 254 78 14 chr11 2338233 2338375 -148445178 + MLT1D LTR MaLR 1 151 -354 188 294 71 12 chr11 2338938 2339023 -148444530 + L2 LINE L2 3100 3189 -83 593 325 41 26 chr11 2339532 2339873 -148443680 - L1MB7 LINE L1 -195 5989 5644 386 174 45 39 chr11 2339994 2340149 -148443404 + (CCCTG)n Simple_repeat Simple_repeat 5 160 0 214 257 29 57 chr11 2340539 2340609 -148442944 + MIR SINE MIR 82 149 -59 216 228 52 57 chr11 2340806 2340910 -148442643 + MIR SINE MIR 25 102 -106 2181 102 0 19 chr11 2340910 2341225 -148442328 + AluSx SINE Alu 1 309 -3 216 228 52 57 chr11 2341225 2341248 -148442305 + MIR SINE MIR 102 124 -84 265 302 125 0 chr11 2342876 2342972 -148440581 - L3 LINE CR1 -489 1088 981 1045 181 0 11 chr11 2344036 2344218 -148439335 - AluJo SINE Alu -132 180 1 2145 122 0 0 chr11 2344252 2344547 -148439006 + AluSx SINE Alu 1 295 -17 1877 113 11 11 chr11 2344548 2344822 -148438731 + AluY SINE Alu 2 275 -36 915 100 0 0 chr11 2344822 2344952 -148438601 + AluY SINE Alu 173 302 -9 2396 146 15 34 chr11 2345129 2345159 -148438394 - MER57A LTR ERV1 0 403 374 186 71 0 0 chr11 2345159 2345187 -148438366 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1941 110 7 11 chr11 2345191 2345472 -148438081 - AluSq SINE Alu -33 280 1 2396 146 15 34 chr11 2345472 2345847 -148437706 - MER57A LTR ERV1 -32 371 1 2238 99 3 6 chr11 2346641 2346955 -148436598 + AluSp SINE Alu 1 313 0 2088 97 3 14 chr11 2347136 2347424 -148436129 + AluSp SINE Alu 1 285 -28 228 67 0 0 chr11 2347424 2347454 -148436099 + (TA)n Simple_repeat Simple_repeat 2 31 0 2098 115 3 13 chr11 2347529 2347834 -148435719 - AluSq SINE Alu -11 302 1 507 65 0 13 chr11 2347834 2347911 -148435642 - MER4E LTR ERV1 -676 90 15 302 225 0 0 chr11 2348873 2348944 -148434609 - MER81 DNA DNA -6 108 38 332 253 75 71 chr11 2348967 2349242 -148434311 - MLT1C LTR MaLR -12 378 110 1814 147 0 14 chr11 2349257 2349419 -148434134 - AluJb SINE Alu -19 293 135 2305 108 0 0 chr11 2349419 2349724 -148433829 - AluSq SINE Alu -8 305 1 1814 147 0 14 chr11 2349724 2349854 -148433699 - AluJb SINE Alu -177 135 5 2122 121 0 10 chr11 2350005 2350311 -148433242 + AluSq SINE Alu 1 303 -10 2344 68 7 0 chr11 2350834 2351130 -148432423 - AluSc SINE Alu -11 298 1 1288 160 88 40 chr11 2351172 2351422 -148432131 + AluJb SINE Alu 39 300 -12 2147 102 0 7 chr11 2351422 2351742 -148431811 + AluSx SINE Alu 1 312 0 1003 234 151 13 chr11 2351751 2352135 -148431418 - L1MC4 LINE L1 -444 7598 7162 5807 77 48 6 chr11 2352310 2353237 -148430316 + MER4A-int LTR ERV1 1479 2450 -4148 2009 102 4 4 chr11 2353237 2353512 -148430041 + AluSg SINE Alu 19 293 -17 5807 77 48 6 chr11 2353512 2353560 -148429993 + MER4A-int LTR ERV1 2450 2495 -4103 1212 152 84 0 chr11 2353560 2353797 -148429756 - LTR8 LTR ERV1 -434 257 1 3317 130 83 53 chr11 2353800 2354437 -148429116 + MER4A-int LTR ERV1 2741 3416 -3182 2436 61 0 13 chr11 2354437 2354748 -148428805 - AluY SINE Alu -4 307 1 3317 130 83 53 chr11 2354748 2355023 -148428530 + MER4A-int LTR ERV1 3416 3681 -2917 * 15489 93 47 20 chr11 2355021 2356422 -148427131 + MER4A-int LTR ERV1 3836 5198 -1400 2417 88 0 0 chr11 2356422 2356730 -148426823 + AluSx SINE Alu 2 309 -3 15489 93 47 20 chr11 2356730 2358019 -148425534 + MER4A-int LTR ERV1 5198 6598 0 495 131 20 20 chr11 2358020 2358119 -148425434 + MER4A LTR ERV1 1 99 -565 1735 113 6 57 chr11 2358119 2358424 -148425129 + MER4A LTR ERV1 262 606 -58 2217 100 10 0 chr11 2358424 2358723 -148424830 - AluSx SINE Alu -10 302 1 1735 113 6 57 chr11 2358723 2358780 -148424773 + MER4A LTR ERV1 606 664 0 2171 116 0 3 chr11 2358865 2359166 -148424387 - AluSq SINE Alu -13 300 1 505 309 17 6 chr11 2359739 2359920 -148423633 + MER53 DNA DNA 1 183 -6 2263 80 17 3 chr11 2360909 2361208 -148422345 - AluSq SINE Alu -10 303 1 292 204 68 0 chr11 2361208 2361296 -148422257 + MER69 DNA AcHobo 2361 2454 -72 541 228 62 11 chr11 2361565 2361799 -148421754 + MLT1C LTR MaLR 72 373 -17 1181 265 73 0 chr11 2363113 2363426 -148420127 + MER58B DNA MER1_type 3 338 -3 318 297 58 36 chr11 2363597 2363735 -148419818 - MIR SINE MIR -33 229 89 655 236 56 15 chr11 2363911 2364106 -148419447 - MIR SINE MIR -45 217 15 205 239 65 76 chr11 2364299 2364391 -148419162 + L2 LINE L2 2883 2973 -299 414 57 0 0 chr11 2364643 2364696 -148418857 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 1038 217 17 0 chr11 2365105 2365370 -148418183 + L1M4 LINE L1 5202 5470 -704 1291 86 0 56 chr11 2365370 2365395 -148418158 + AluY SINE Alu 118 143 -168 2383 41 3 7 chr11 2365395 2365690 -148417863 + AluY SINE Alu 17 310 -1 1291 86 0 56 chr11 2365690 2365861 -148417692 + AluY SINE Alu 143 303 -8 1081 179 20 99 chr11 2365865 2366167 -148417386 + L1M4 LINE L1 5479 5756 -418 445 281 126 7 chr11 2368449 2368584 -148414969 - MIR SINE MIR -100 162 12 190 262 0 0 chr11 2369997 2370039 -148413514 - MIR SINE MIR -63 145 104 236 225 30 175 chr11 2370478 2370644 -148412909 - MIR SINE MIR -65 143 3 830 145 6 23 chr11 2371162 2371472 -148412081 + (TCCA)n Simple_repeat Simple_repeat 1 305 0 235 314 82 57 chr11 2373185 2373344 -148410209 + MIR SINE MIR 77 239 -23 229 182 73 0 chr11 2374215 2374270 -148409283 - L2 LINE L2 -186 3086 3028 212 293 121 32 chr11 2374372 2374529 -148409024 - L2 LINE L2 -168 3104 2934 535 340 30 8 chr11 2376203 2376435 -148407118 + MIR SINE MIR 1 234 -28 481 281 65 0 chr11 2379017 2379170 -148404383 - MLT1C LTR MaLR 0 467 305 383 365 19 6 chr11 2379872 2380028 -148403525 - MIR SINE MIR -10 252 95 184 315 9 93 chr11 2381580 2381688 -148401865 + MER5B DNA MER1_type 13 111 -67 205 280 32 11 chr11 2382394 2382487 -148401066 - L2 LINE L2 -182 3090 2996 2452 152 67 0 chr11 2382788 2383189 -148400364 - MSTA LTR MaLR 0 428 1 2218 75 0 7 chr11 2383448 2383741 -148399812 - AluY SINE Alu -20 291 1 1191 216 36 88 chr11 2384186 2384571 -148398982 + MLT1A1 LTR MaLR 1 365 0 188 274 78 0 chr11 2384595 2384646 -148398907 - L3 LINE CR1 -12 1565 1511 251 182 55 0 chr11 2384722 2384777 -148398776 - MER117 DNA MER1_type -82 115 58 404 382 66 5 chr11 2384818 2385030 -148398523 - L3 LINE CR1 -374 1203 979 226 331 60 8 chr11 2385285 2385407 -148398146 + MIR SINE MIR 18 150 -69 1618 145 3 74 chr11 2385869 2386193 -148397360 + AluJb SINE Alu 6 306 -6 2312 65 14 0 chr11 2386524 2386815 -148396738 - AluSx SINE Alu -17 295 1 3066 230 17 25 chr11 2386986 2387926 -148395627 - L1M3 LINE L1 -704 5479 4547 3397 141 16 18 chr11 2388010 2388640 -148394913 + L1PA16 LINE L1 5460 6088 -78 401 213 0 0 chr11 2388905 2388985 -148394568 + L1PA16 LINE L1 6079 6158 -8 1013 67 6 16 chr11 2389015 2389233 -148394320 + L1HS LINE L1 5992 6180 0 282 209 58 23 chr11 2389300 2389386 -148394167 - MLT1I LTR MaLR -40 369 281 1072 266 18 35 chr11 2389549 2389818 -148393735 + MLT1A2 LTR MaLR 1 264 -110 2303 109 124 16 chr11 2389818 2390204 -148393349 + MSTA LTR MaLR 1 428 0 1072 266 18 35 chr11 2390204 2390272 -148393281 + MLT1A2 LTR MaLR 264 332 -42 1206 152 0 15 chr11 2390314 2390512 -148393041 - AluJo SINE Alu -37 275 81 2155 128 0 0 chr11 2390565 2390862 -148392691 - AluSx SINE Alu -15 297 1 482 292 87 5 chr11 2390889 2391074 -148392479 - MER3 DNA MER1_type 0 209 10 1337 184 78 73 chr11 2391579 2391782 -148391771 + MSTB1 LTR MaLR 6 207 -225 1450 166 7 50 chr11 2391782 2392084 -148391469 + AluJo SINE Alu 24 312 0 1337 184 78 73 chr11 2392084 2392305 -148391248 + MSTB1 LTR MaLR 207 432 0 1515 209 29 24 chr11 2393212 2393590 -148389963 + Ricksha_c DNA DNA 70 449 -1597 4685 155 34 19 chr11 2393767 2394662 -148388891 + Ricksha_c DNA DNA 454 1361 -685 2567 62 6 3 chr11 2394665 2395019 -148388534 + THE1A LTR MaLR 1 355 0 2928 161 34 58 chr11 2395019 2395383 -148388170 + Ricksha_c DNA DNA 1361 1732 -1522 1926 149 0 10 chr11 2395383 2395679 -148387874 - AluSx SINE Alu -19 293 1 2928 161 34 58 chr11 2395679 2395863 -148387690 + Ricksha_c DNA DNA 1732 1891 -1363 1854 132 39 0 chr11 2395863 2396144 -148387409 + AluSx SINE Alu 1 292 -20 2928 161 34 58 chr11 2396144 2396297 -148387256 + Ricksha_c DNA DNA 1891 2046 0 4572 222 127 20 chr11 2396299 2397424 -148386129 - L1ME1 LINE L1 -21 6145 5142 219 69 0 0 chr11 2397424 2397453 -148386100 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 4572 222 127 20 chr11 2397453 2398547 -148385006 - L1ME1 LINE L1 -1024 5142 3694 237 270 283 4 chr11 2398682 2398854 -148384699 - MIR SINE MIR -21 187 16 713 309 104 24 chr11 2399045 2399594 -148383959 + L2 LINE L2 2714 3299 -14 187 225 25 0 chr11 2399924 2399964 -148383589 + L2 LINE L2 3211 3251 -21 418 264 71 14 chr11 2400092 2400232 -148383321 + MIR SINE MIR 96 243 -19 233 255 10 0 chr11 2400265 2400363 -148383190 + (ATGGTG)n Simple_repeat Simple_repeat 6 104 0 * 865 162 6 6 chr11 2400348 2400527 -148383026 + (ATG)n Simple_repeat Simple_repeat 1 179 0 785 189 0 6 chr11 2400571 2400751 -148382802 + (ATG)n Simple_repeat Simple_repeat 1 179 0 519 189 13 26 chr11 2400764 2400917 -148382636 + (ATGGTG)n Simple_repeat Simple_repeat 2 152 0 1904 193 52 25 chr11 2401057 2401535 -148382018 - Charlie1b DNA MER1_type -4 519 29 2468 59 0 0 chr11 2401604 2401907 -148381646 + AluSx SINE Alu 1 303 -9 1589 188 27 60 chr11 2402794 2403240 -148380313 + MLT1C LTR MaLR 37 467 0 180 103 29 59 chr11 2404740 2404808 -148378745 + (CAGAGA)n Simple_repeat Simple_repeat 1 66 0 325 325 65 56 chr11 2405168 2405399 -148378154 + MIR SINE MIR 21 253 -9 240 233 0 111 chr11 2405691 2405755 -148377798 + MIR SINE MIR 117 170 -92 2330 91 0 0 chr11 2405755 2406063 -148377490 + AluSg SINE Alu 1 308 -2 240 233 0 111 chr11 2406063 2406088 -148377465 + MIR SINE MIR 170 196 -66 436 276 17 17 chr11 2406405 2406546 -148377007 + MIR SINE MIR 104 243 -19 678 259 38 28 chr11 2406710 2406922 -148376631 - MER20 DNA MER1_type 0 219 6 282 333 16 40 chr11 2407113 2407239 -148376314 - MIR SINE MIR -51 211 89 228 367 28 0 chr11 2407351 2407460 -148376093 - MIR SINE MIR -102 160 49 25 0 0 0 chr11 2409458 2409483 -148374070 + GC_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr11 2409516 2409550 -148374003 + GC_rich Low_complexity Low_complexity 1 34 0 383 312 75 48 chr11 2412348 2412946 -148370607 + L2 LINE L2 2451 3073 -240 191 274 14 68 chr11 2414805 2414878 -148368675 + MIR3 SINE MIR 99 167 -41 248 217 50 0 chr11 2417793 2417853 -148365700 + MIR SINE MIR 82 144 -118 2229 82 0 0 chr11 2419245 2419568 -148363985 - AluSc SINE Alu 0 323 1 1000 188 0 0 chr11 2419619 2419789 -148363764 - FRAM SINE Alu -10 166 1 299 288 39 10 chr11 2421868 2422045 -148361508 + MIR SINE MIR 6 241 -21 2034 55 76 7 chr11 2422405 2422680 -148360873 + AluY SINE Alu 1 294 -17 755 282 47 28 chr11 2423016 2423271 -148360282 - MIR SINE MIR -1 261 2 369 333 37 0 chr11 2424079 2424241 -148359312 - MER5A DNA MER1_type -13 176 9 2275 72 3 0 chr11 2424315 2424643 -148358910 + AluSx SINE Alu 1 312 0 33 25 0 0 chr11 2425322 2425362 -148358191 + AT_rich Low_complexity Low_complexity 1 40 0 225 321 94 19 chr11 2425477 2425583 -148357970 - MIR SINE MIR -25 237 124 238 276 115 0 chr11 2425735 2425822 -148357731 - L1ME4a LINE L1 -3 6118 6022 198 342 54 36 chr11 2426129 2426240 -148357313 + MIR SINE MIR 71 183 -79 197 387 93 34 chr11 2426831 2427154 -148356399 - L2 LINE L2 0 3272 2931 444 263 15 0 chr11 2428427 2428564 -148354989 - MER67B LTR ERV1 0 661 523 969 184 0 0 chr11 2428564 2428754 -148354799 + FRAM SINE Alu 1 176 0 454 278 131 27 chr11 2428754 2429171 -148354382 - MER67B LTR ERV1 -128 533 34 1059 174 0 0 chr11 2429319 2429480 -148354073 + U1 snRNA snRNA 1 161 -4 554 236 185 10 chr11 2429517 2429712 -148353841 - L1MB5 LINE L1 -18 6156 5928 2532 53 0 0 chr11 2430541 2430842 -148352711 - AluY SINE Alu -10 301 1 2226 68 0 0 chr11 2432275 2432556 -148350997 + AluY SINE Alu 1 281 -30 1910 126 50 0 chr11 2433144 2433421 -148350132 + AluSg SINE Alu 1 291 -19 701 150 0 9 chr11 2435301 2435414 -148348139 + AluY SINE Alu 184 295 -16 389 267 196 10 chr11 2436348 2436553 -148347000 + MIR SINE MIR 23 262 0 2238 159 68 12 chr11 2437456 2437865 -148345688 - Tigger2a DNA MER2_type -1 433 2 454 304 60 51 chr11 2439295 2439512 -148344041 - MIR SINE MIR -31 231 13 373 102 0 0 chr11 2440826 2440885 -148342668 - L1MB2 LINE L1 0 6171 6113 2252 218 32 4 chr11 2440909 2441445 -148342108 - L1MB5 LINE L1 -282 5901 5351 546 339 116 31 chr11 2441445 2441522 -148342031 - L1MC/D LINE L1 -566 5956 5887 972 285 146 43 chr11 2441522 2442030 -148341523 - MER68 LTR ERV1 -2 560 1 546 339 116 31 chr11 2442030 2442055 -148341498 - L1MC/D LINE L1 -635 5887 5866 1826 176 0 7 chr11 2442055 2442356 -148341197 + AluJo SINE Alu 1 299 -13 546 339 116 31 chr11 2442356 2442641 -148340912 - L1MC/D LINE L1 -656 5866 5535 1846 157 71 0 chr11 2442643 2443007 -148340546 + MSTC LTR MaLR 1 390 -38 2099 107 0 20 chr11 2443007 2443306 -148340247 + AluSc SINE Alu 1 293 -16 2283 94 7 0 chr11 2443320 2443629 -148339924 + AluSx SINE Alu 1 311 -1 185 139 23 0 chr11 2443633 2443676 -148339877 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 820 193 0 0 chr11 2443759 2443894 -148339659 + AluJo SINE Alu 1 135 -177 26 0 0 0 chr11 2443894 2443920 -148339633 + AT_rich Low_complexity Low_complexity 1 26 0 1057 300 94 82 chr11 2444004 2444776 -148338777 - L1MC/D LINE L1 -1500 4926 2769 1679 182 74 12 chr11 2444782 2445199 -148338354 - L1MC1 LINE L1 -5 6328 5886 863 221 4 65 chr11 2445238 2445469 -148338084 - MER21B LTR ERV1 -72 791 575 2031 135 7 0 chr11 2445470 2445773 -148337780 + AluSc SINE Alu 1 305 -4 549 44 0 0 chr11 2445773 2445841 -148337712 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 2092 167 28 0 chr11 2445845 2446240 -148337313 - L1MC/D LINE L1 -5930 496 91 12557 81 2 21 chr11 2546270 2548020 -148235533 - L1P3 LINE L1 -4738 1723 8 337 179 60 12 chr11 2548027 2548111 -148235442 - MLT1B LTR MaLR -210 180 93 2503 34 41 0 chr11 2548777 2549071 -148234482 - AluY SINE Alu -5 306 1 40 21 0 0 chr11 2549076 2549123 -148234430 + AT_rich Low_complexity Low_complexity 1 47 0 262 261 14 14 chr11 2549879 2549948 -148233605 - HERVL LTR ERVL -3194 2460 2392 271 287 47 67 chr11 2551338 2551488 -148232065 + MIR SINE MIR 70 216 -46 1429 183 57 89 chr11 2551996 2552197 -148231356 + MER57A LTR ERV1 13 196 -207 2095 129 10 0 chr11 2552197 2552492 -148231061 + AluSx SINE Alu 1 298 -14 1429 183 57 89 chr11 2552492 2552694 -148230859 + MER57A LTR ERV1 196 403 0 216 289 36 12 chr11 2552699 2552782 -148230771 - MIR SINE MIR -130 132 48 2178 116 34 0 chr11 2552838 2553131 -148230422 - AluSx SINE Alu -9 303 1 247 310 177 0 chr11 2555241 2555354 -148228199 - MIR SINE MIR -51 211 79 1087 170 28 161 chr11 2555977 2556407 -148227146 + MER93b LTR ERV1 1 373 0 4659 86 7 18 chr11 2556449 2557002 -148226551 - L1PA11 LINE L1 -128 6046 5500 2105 91 62 0 chr11 2557002 2557278 -148226275 - AluSg SINE Alu -17 293 1 4659 86 7 18 chr11 2557278 2557398 -148226155 - L1PA11 LINE L1 -674 5500 5380 404 240 39 0 chr11 2557484 2557588 -148225965 + MER5A DNA MER1_type 76 183 -6 726 185 20 20 chr11 2558592 2558794 -148224759 + L1MA8 LINE L1 5971 6181 -124 196 303 28 46 chr11 2559057 2559166 -148224387 + MIR SINE MIR 35 141 -67 377 289 16 31 chr11 2559234 2559362 -148224191 - L2 LINE L2 -10 3262 3137 189 0 0 0 chr11 2559579 2559600 -148223953 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 327 350 64 6 chr11 2559600 2559757 -148223796 + MIR SINE MIR 49 214 -48 3529 105 8 12 chr11 2560328 2560843 -148222710 + LTR10D LTR ERV1 1 513 0 2134 138 3 0 chr11 2561726 2562031 -148221522 + AluSx SINE Alu 1 306 -6 298 289 26 46 chr11 2562538 2562690 -148220863 - MLT2F LTR ERVL -5 658 510 1150 256 140 43 chr11 2562708 2563162 -148220391 + MLT1E LTR MaLR 23 530 -63 2240 115 0 0 chr11 2563162 2563457 -148220096 - AluSx SINE Alu -17 295 1 1150 256 140 43 chr11 2563457 2563494 -148220059 + MLT1E LTR MaLR 530 562 -31 2441 84 0 3 chr11 2563544 2563854 -148219699 - AluY SINE Alu -2 309 1 2899 157 10 29 chr11 2564159 2564682 -148218871 - L1MA8 LINE L1 -159 6132 5620 2315 108 129 5 chr11 2564880 2565259 -148218294 - MSTA LTR MaLR -2 426 1 206 372 0 13 chr11 2565553 2565631 -148217922 + MIR3 SINE MIR 89 165 -43 441 139 13 0 chr11 2565770 2565849 -148217704 - MADE1 DNA Mariner 0 80 1 235 263 92 20 chr11 2567761 2567913 -148215640 - L1ME3 LINE L1 -91 6071 5909 1532 196 0 27 chr11 2569431 2569732 -148213821 + AluJb SINE Alu 1 293 -19 186 330 89 22 chr11 2571564 2571743 -148211810 - MIR SINE MIR -44 218 28 1412 154 32 0 chr11 2573500 2573721 -148209832 + MER30 DNA MER1_type 1 228 -2 572 276 118 26 chr11 2574210 2574514 -148209039 + L1ME2 LINE L1 5811 6142 -22 213 209 0 0 chr11 2574635 2574678 -148208875 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 499 269 100 45 chr11 2575023 2575385 -148208168 + L1ME1 LINE L1 5745 6125 -41 23 33 0 0 chr11 2575583 2575613 -148207940 + AT_rich Low_complexity Low_complexity 1 30 0 1606 165 15 4 chr11 2577275 2577548 -148206005 - AluJo SINE Alu -22 290 15 240 207 35 0 chr11 2577724 2577782 -148205771 + G-rich Low_complexity Low_complexity 5 64 0 231 114 0 0 chr11 2577791 2577826 -148205727 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 566 211 26 0 chr11 2578189 2578303 -148205250 + AluJo SINE Alu 90 206 -106 3421 203 85 34 chr11 2578327 2580068 -148203485 + L1MA8 LINE L1 4474 6291 0 1894 138 0 4 chr11 2580199 2580467 -148203086 - AluSx SINE Alu -45 267 1 2286 98 0 7 chr11 2580913 2581210 -148202343 - AluSx SINE Alu -13 299 5 28 0 0 0 chr11 2582210 2582238 -148201315 + AT_rich Low_complexity Low_complexity 1 28 0 1771 187 3 16 chr11 2582648 2582963 -148200590 - AluJo SINE Alu -1 311 1 3536 71 0 0 chr11 2583472 2583910 -148199643 - LTR21B LTR ERV1 0 438 1 1806 243 19 63 chr11 2583910 2584532 -148199021 - HERVFH21 LTR ERV1 0 6529 5935 20686 137 30 21 chr11 2584533 2588645 -148194908 - HERVFH21 LTR ERV1 -1791 4738 539 1794 200 60 25 chr11 2588639 2589184 -148194369 - HERVFH21 LTR ERV1 -5951 578 1 * 3478 58 11 0 chr11 2589185 2589618 -148193935 - LTR21B LTR ERV1 0 438 1 226 310 58 7 chr11 2592631 2592786 -148190767 + L1M4c LINE L1 1951 2113 -4917 764 261 67 71 chr11 2592821 2593072 -148190481 + L1M4c LINE L1 2013 2264 -4842 1790 181 0 10 chr11 2593072 2593364 -148190189 + AluJb SINE Alu 1 289 -23 764 261 67 71 chr11 2593364 2594834 -148188719 + L1M4c LINE L1 2264 3837 -3269 987 275 22 16 chr11 2594845 2595165 -148188388 + L1 LINE L1 4519 4840 -1306 237 363 6 0 chr11 2595198 2595355 -148188198 + L1M3 LINE L1 1684 1841 -5009 * 400 248 14 35 chr11 2595334 2595475 -148188078 + L1M3 LINE L1 2464 2601 -4248 567 208 32 8 chr11 2595482 2595607 -148187946 + FLAM_C SINE Alu 6 133 -10 897 265 123 33 chr11 2595801 2596793 -148186760 + L1M3 LINE L1 2493 3569 -3279 1847 230 111 36 chr11 2596838 2597273 -148186280 + L1M3 LINE L1 5246 5647 -1226 2594 51 0 22 chr11 2597273 2597588 -148185965 + AluY SINE Alu 1 308 -3 1847 230 111 36 chr11 2597588 2598094 -148185459 + L1M3 LINE L1 5647 6311 -562 1753 170 0 0 chr11 2598094 2598377 -148185176 + AluJb SINE Alu 15 297 -15 1847 230 111 36 chr11 2598377 2598604 -148184949 + L1M3 LINE L1 6311 6520 -353 2188 91 7 21 chr11 2599088 2599398 -148184155 + AluSp SINE Alu 2 307 0 269 271 21 21 chr11 2599520 2599616 -148183937 + L1MA9 LINE L1 3 98 -5857 485 275 8 0 chr11 2599626 2599746 -148183807 + FLAM_C SINE Alu 4 124 -19 259 297 0 0 chr11 2599746 2599810 -148183743 + L1MA9 LINE L1 92 155 -5800 * 1735 264 44 15 chr11 2599807 2600395 -148183158 + L1MA9 LINE L1 4463 5067 -967 310 240 53 0 chr11 2600458 2600533 -148183020 + MADE1 DNA Mariner 1 79 -1 2829 228 44 22 chr11 2600534 2601310 -148182243 + L1MA9 LINE L1 5378 6170 -30 434 165 1 3 chr11 2601360 2601466 -148182087 + L1MA4 LINE L1 5745 5849 -314 226 143 54 0 chr11 2601498 2601554 -148181999 - L1MCa LINE L1 -4362 2064 2006 254 364 0 0 chr11 2603366 2603465 -148180088 - MER5A DNA MER1_type -80 109 11 500 254 113 24 chr11 2603621 2603834 -148179719 + L1MC4 LINE L1 7278 7509 -533 1995 138 0 7 chr11 2604041 2604338 -148179215 - AluSx SINE Alu -16 296 2 246 300 100 27 chr11 2605317 2605467 -148178086 + MER5B DNA MER1_type 17 177 -1 1162 78 203 5 chr11 2607568 2607760 -148175793 + MER30 DNA MER1_type 1 230 0 2446 59 0 0 chr11 2609333 2609620 -148173933 + AluSx SINE Alu 1 287 -25 1179 280 19 24 chr11 2609624 2609996 -148173557 + MER93a LTR ERV1 7 376 -26 28 0 0 0 chr11 2610182 2610210 -148173343 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 2610734 2610758 -148172795 + AT_rich Low_complexity Low_complexity 1 24 0 819 263 103 0 chr11 2610882 2611163 -148172390 - MER33 DNA MER1_type -14 310 1 1368 234 119 66 chr11 2611708 2612070 -148171483 - MLT1H LTR MaLR 0 549 151 2695 98 0 3 chr11 2612070 2612426 -148171127 + THE1A LTR MaLR 1 355 0 1368 234 119 66 chr11 2612426 2612577 -148170976 - MLT1H LTR MaLR -398 151 9 299 284 66 47 chr11 2612577 2612729 -148170824 - MIR SINE MIR -54 154 4 468 269 46 29 chr11 2613262 2613437 -148170116 + MER5B DNA MER1_type 1 178 0 642 125 9 9 chr11 2613439 2613551 -148170002 - L1PA13 LINE L1 0 6163 6052 235 306 14 0 chr11 2613551 2613623 -148169930 + L2 LINE L2 3232 3304 -9 595 309 15 15 chr11 2614427 2614631 -148168922 - MIR SINE MIR -37 225 22 260 222 19 0 chr11 2614627 2614681 -148168872 - L2 LINE L2 0 3272 3218 * 327 322 14 61 chr11 2614854 2614910 -148168643 - MIR SINE MIR -49 213 156 2391 63 0 10 chr11 2614910 2615213 -148168340 + AluY SINE Alu 1 300 -11 327 322 14 61 chr11 2615213 2615370 -148168183 - MIR SINE MIR -106 156 10 280 285 71 32 chr11 2616425 2616706 -148166847 - HAL1 LINE L1 -1124 1383 1092 1125 186 11 76 chr11 2616732 2617007 -148166546 - L1MC1 LINE L1 0 6333 6077 302 280 119 0 chr11 2617310 2617453 -148166100 + L1P LINE L1 3725 3884 -2262 873 192 41 0 chr11 2617922 2618094 -148165459 - MSTD LTR MaLR 0 396 218 882 256 231 23 chr11 2618182 2618459 -148165094 + SATR1 Satellite Satellite 1 219 -2272 2411 54 0 0 chr11 2618459 2618756 -148164797 + AluY SINE Alu 1 297 -14 882 256 231 23 chr11 2618756 2620243 -148163310 + SATR1 Satellite Satellite 219 2489 -2 1034 227 192 48 chr11 2620267 2622051 -148161502 + SATR1 Satellite Satellite 1 2041 -404 1968 128 0 3 chr11 2623755 2624059 -148159494 + AluY SINE Alu 1 303 -8 213 250 81 81 chr11 2624117 2624253 -148159300 - L2 LINE L2 0 3272 3137 2012 128 0 6 chr11 2624619 2624931 -148158622 - AluSg SINE Alu 0 310 1 228 395 45 14 chr11 2625323 2625543 -148158010 + MIR SINE MIR 32 258 -4 3407 209 17 63 chr11 2625863 2626879 -148156674 - LTR5 LTR ERVK 0 969 1 31 0 0 0 chr11 2627335 2627366 -148156187 + AT_rich Low_complexity Low_complexity 1 31 0 1225 225 15 44 chr11 2627386 2627639 -148155914 - L1MB3 LINE L1 -30 6153 5911 1874 153 0 7 chr11 2627639 2627933 -148155620 - AluSx SINE Alu -18 294 3 1225 225 15 44 chr11 2627933 2628021 -148155532 - L1MB3 LINE L1 -272 5911 5822 272 83 21 0 chr11 2628022 2628070 -148155483 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 7680 91 69 71 chr11 2628101 2629405 -148154148 + SVA Other Other 85 1386 0 732 228 41 15 chr11 2629423 2629643 -148153910 + MLT1C LTR MaLR 238 363 -2 2769 81 100 5 chr11 2630099 2630508 -148153045 + LTR7 LTR ERV1 1 448 -2 246 282 77 0 chr11 2631197 2631275 -148152278 + MLT1J2 LTR MaLR 252 335 -115 2009 133 3 0 chr11 2631655 2631964 -148151589 + AluSx SINE Alu 1 310 -2 1017 196 72 0 chr11 2633272 2633481 -148150072 + MER58A DNA MER1_type 1 224 0 231 353 0 0 chr11 2633678 2633746 -148149807 + L2 LINE L2 3153 3220 -52 1902 123 35 0 chr11 2634576 2634861 -148148692 + AluSx SINE Alu 5 299 -13 1974 128 24 0 chr11 2635242 2635538 -148148015 - AluSx SINE Alu -9 303 1 1779 119 32 11 chr11 2636811 2637096 -148146457 - AluSx SINE Alu -21 291 1 1899 101 4 14 chr11 2637174 2637483 -148146070 - AluSq SINE Alu 0 313 16 625 133 0 0 chr11 2637484 2637599 -148145954 + AluSg/x SINE Alu 199 310 0 431 73 176 0 chr11 2638134 2638202 -148145351 - MADE1 DNA Mariner 0 80 1 825 245 40 0 chr11 2639435 2639635 -148143918 - MER58A DNA MER1_type -16 208 1 2170 96 3 13 chr11 2642103 2642405 -148141148 + AluSx SINE Alu 1 299 -13 378 0 0 0 chr11 2642406 2642448 -148141105 + (CA)n Simple_repeat Simple_repeat 1 42 0 1028 147 58 0 chr11 2642509 2642699 -148140854 - AluJo SINE Alu -6 306 106 1839 124 13 52 chr11 2642737 2643043 -148140510 - AluSx SINE Alu -11 301 8 1184 110 12 0 chr11 2643181 2643354 -148140199 + MER30 DNA MER1_type 1 175 -55 1317 151 5 0 chr11 2643472 2643691 -148139862 - AluJo SINE Alu -92 220 1 275 280 144 8 chr11 2643964 2644096 -148139457 + MIR SINE MIR 81 230 -32 247 254 15 15 chr11 2644254 2644321 -148139232 - MIR SINE MIR -115 147 81 628 314 74 0 chr11 2646088 2646317 -148137236 + L1MD2 LINE L1 5763 6008 -351 1782 128 45 14 chr11 2646374 2646530 -148137023 - AluSg SINE Alu -11 299 128 2198 104 3 0 chr11 2646530 2646829 -148136724 - AluSq SINE Alu -13 300 1 1782 128 45 14 chr11 2646829 2646960 -148136593 - AluSg SINE Alu -182 128 3 301 290 73 67 chr11 2647039 2647180 -148136373 - MIR SINE MIR -68 140 43 709 153 51 8 chr11 2647482 2647600 -148135953 + FLAM_A SINE Alu 4 126 -7 2050 132 3 0 chr11 2648099 2648403 -148135150 + AluSx SINE Alu 1 305 -7 510 275 194 14 chr11 2648415 2648782 -148134771 - LTR33A LTR ERVL -16 507 75 1990 141 0 0 chr11 2649677 2649974 -148133579 - AluSx SINE Alu -15 297 1 841 262 88 31 chr11 2651429 2651914 -148131639 + L2 LINE L2 2777 3312 -1 865 247 64 0 chr11 2651914 2652149 -148131404 - MIR SINE MIR 0 262 13 180 136 45 68 chr11 2652174 2652218 -148131335 + MIR SINE MIR 135 177 -85 413 253 88 50 chr11 2654418 2654600 -148128953 - L2 LINE L2 -3 3310 3122 2235 90 3 7 chr11 2655646 2655956 -148127597 - AluSq SINE Alu -4 309 1 1885 107 32 0 chr11 2656050 2656331 -148127222 - AluSc SINE Alu -19 290 1 1510 178 28 14 chr11 2656988 2657274 -148126279 + AluJo SINE Alu 1 290 -22 1442 192 27 72 chr11 2657294 2657447 -148126106 + MLT1C LTR MaLR 41 199 -268 1959 124 3 7 chr11 2657447 2657745 -148125808 + AluSx SINE Alu 1 297 -15 1442 192 27 72 chr11 2657745 2657992 -148125561 + MLT1C LTR MaLR 199 423 -44 2100 121 3 0 chr11 2658016 2658322 -148125231 - AluSq SINE Alu -6 307 1 1470 170 58 7 chr11 2658328 2658605 -148124948 - AluJo SINE Alu -21 291 1 538 164 95 9 chr11 2658606 2658722 -148124831 - MER45A DNA AcHobo -52 126 1 1454 176 127 0 chr11 2659502 2659769 -148123784 - AluJo SINE Alu -1 301 1 555 251 91 23 chr11 2660880 2661099 -148122454 - MIR SINE MIR 0 262 29 1331 185 46 73 chr11 2661261 2661563 -148121990 - AluJo SINE Alu -18 294 1 2016 126 7 10 chr11 2661761 2662071 -148121482 + AluSx SINE Alu 2 310 -2 2162 107 0 7 chr11 2662692 2663002 -148120551 - AluSx SINE Alu -4 308 1 1670 182 3 43 chr11 2663104 2663292 -148120261 - AluJb SINE Alu -1 311 140 1892 113 65 28 chr11 2663292 2663583 -148119970 - AluSx SINE Alu -10 302 1 1670 182 3 43 chr11 2663583 2663718 -148119835 - AluJb SINE Alu -172 140 1 1941 180 20 87 chr11 2663729 2663799 -148119754 - L1MB7 LINE L1 0 6184 6111 1883 157 3 10 chr11 2663799 2664099 -148119454 + AluJb SINE Alu 1 298 -14 1941 180 20 87 chr11 2664099 2664612 -148118941 - L1MB7 LINE L1 -73 6111 5643 4023 118 99 94 chr11 2664812 2666178 -148117375 - pTR5 LTR ERV1 0 2438 742 2282 158 46 11 chr11 2666178 2666615 -148116938 - MER66B LTR ERV1 -34 452 1 1539 172 0 16 chr11 2666615 2666865 -148116688 - AluJb SINE Alu -66 246 1 313 315 54 15 chr11 2666885 2667015 -148116538 + MIR SINE MIR 96 230 -32 1900 173 0 22 chr11 2667037 2667355 -148116198 - AluJo SINE Alu -1 311 1 183 167 0 0 chr11 2667494 2667536 -148116017 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 2325 103 0 0 chr11 2667536 2667826 -148115727 - AluSx SINE Alu -22 290 1 534 286 14 0 chr11 2668703 2668850 -148114703 - MER104 DNA Tc2 -4 176 28 372 296 16 40 chr11 2668886 2669011 -148114542 + L1MC4 LINE L1 6582 6703 -1339 1501 157 0 67 chr11 2669025 2669136 -148114417 - AluJo SINE Alu -63 249 132 2025 161 0 0 chr11 2669136 2669434 -148114119 - AluSx SINE Alu -14 298 1 1501 157 0 67 chr11 2669434 2669589 -148113964 - AluJo SINE Alu -180 132 1 1153 101 0 0 chr11 2669684 2669832 -148113721 - AluSp/q SINE Alu -5 308 161 358 288 17 45 chr11 2670027 2670204 -148113349 + MLT1K LTR MaLR 98 269 -319 542 133 0 0 chr11 2670396 2670471 -148113082 + Alu SINE Alu 220 294 -17 1517 156 67 25 chr11 2670481 2670763 -148112790 + AluJo SINE Alu 1 294 -18 398 257 176 0 chr11 2670769 2670905 -148112648 + MIR SINE MIR 31 190 -72 914 212 69 0 chr11 2671543 2671760 -148111793 + LTR16A1 LTR ERVL 226 457 0 395 268 68 63 chr11 2671884 2672074 -148111479 + L2 LINE L2 3120 3310 -3 2088 155 0 3 chr11 2672132 2672442 -148111111 - AluSg SINE Alu -1 309 1 255 79 0 0 chr11 2673015 2673053 -148110500 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 161 0 0 chr11 2674250 2674312 -148109241 + GA-rich Low_complexity Low_complexity 1 62 0 787 266 99 9 chr11 2675135 2675368 -148108185 + MIR SINE MIR 3 256 -6 729 181 23 84 chr11 2675517 2675585 -148107968 - MER3 DNA MER1_type 0 209 138 2149 126 3 0 chr11 2675585 2675878 -148107675 + AluSx SINE Alu 1 294 -18 729 181 23 84 chr11 2675878 2676024 -148107529 - MER3 DNA MER1_type -71 138 8 3308 139 50 2 chr11 2676044 2676547 -148107006 - MER1A DNA MER1_type 0 527 1 2302 108 0 0 chr11 2676634 2676931 -148106622 - AluSq SINE Alu -16 297 1 592 246 33 30 chr11 2676948 2677152 -148106401 - MIR SINE MIR -40 222 23 353 284 74 0 chr11 2677515 2677610 -148105943 - L2 LINE L2 -12 3260 3159 487 270 82 19 chr11 2677636 2677795 -148105758 - MIR SINE MIR -15 247 79 2871 221 28 58 chr11 2678113 2678976 -148104577 - LTR5 LTR ERVK 0 969 133 253 282 40 74 chr11 2729054 2729203 -148054350 + MER5A DNA MER1_type 32 175 -3 2115 121 14 7 chr11 2729496 2729786 -148053767 - AluSc SINE Alu -17 292 1 570 286 96 64 chr11 2729867 2730241 -148053312 + L1MC5 LINE L1 7548 7933 -28 1872 167 20 10 chr11 2730243 2730543 -148053010 + AluJb SINE Alu 1 303 -9 241 250 164 3 chr11 2730986 2731100 -148052453 - MIR SINE MIR -47 161 31 2160 148 3 0 chr11 2731454 2731765 -148051788 - AluSx SINE Alu 0 312 1 220 346 9 37 chr11 2731879 2731986 -148051567 - MIR SINE MIR -46 216 113 443 277 92 11 chr11 2732428 2732612 -148050941 - MIR SINE MIR -52 210 12 180 325 0 65 chr11 2732594 2732671 -148050882 + L2 LINE L2 3241 3312 -1 * 504 246 0 0 chr11 2732685 2732930 -148050623 + (TGGA)n Simple_repeat Simple_repeat 1 245 0 621 174 0 0 chr11 2732967 2733099 -148050454 + (TGGA)n Simple_repeat Simple_repeat 1 132 0 327 238 135 40 chr11 2734135 2734261 -148049292 + MIR SINE MIR 10 147 -115 283 301 168 38 chr11 2734265 2734611 -148048942 - L2 LINE L2 -2 3311 2921 2304 105 13 7 chr11 2734954 2735260 -148048293 + AluSq SINE Alu 1 308 -5 190 276 53 40 chr11 2735302 2735378 -148048175 + L3 LINE CR1 230 306 -1271 775 217 6 0 chr11 2735957 2736132 -148047421 + MER53 DNA DNA 14 189 0 316 268 0 52 chr11 2736726 2736823 -148046730 - MIR SINE MIR -70 192 101 283 378 27 5 chr11 2737136 2737321 -148046232 + L1MC/D LINE L1 5611 5799 -2009 2027 84 3 0 chr11 2737506 2737790 -148045763 + L1PA8 LINE L1 5886 6170 -2 1459 123 25 185 chr11 2737904 2738271 -148045282 - AluSg SINE Alu -2 308 1 2315 107 13 0 chr11 2738893 2739192 -148044361 - AluSx SINE Alu -9 303 1 986 192 25 5 chr11 2740094 2740292 -148043261 - MER58A DNA MER1_type -14 210 9 2450 133 52 36 chr11 2740701 2740875 -148042678 + L1MA8 LINE L1 5777 5947 -344 1804 186 6 3 chr11 2740875 2741186 -148042367 + AluJo SINE Alu 1 312 0 2450 133 52 36 chr11 2741186 2741515 -148042038 + L1MA8 LINE L1 5947 6288 -3 25 0 0 0 chr11 2741550 2741575 -148041978 + AT_rich Low_complexity Low_complexity 1 25 0 2197 117 13 13 chr11 2741580 2741887 -148041666 - AluSx SINE Alu -3 309 3 1303 156 54 0 chr11 2742119 2742324 -148041229 + AluSx SINE Alu 1 216 -96 247 365 64 0 chr11 2742352 2742555 -148040998 + L2 LINE L2 2155 2370 -944 2150 131 0 0 chr11 2743670 2743967 -148039586 + AluSx SINE Alu 8 304 -8 371 315 54 22 chr11 2743970 2744154 -148039399 - MIR SINE MIR -32 230 41 642 209 39 96 chr11 2744183 2744413 -148039140 + MER20 DNA MER1_type 1 217 -2 200 184 0 0 chr11 2744845 2744883 -148038670 + C-rich Low_complexity Low_complexity 1 38 0 1452 175 14 37 chr11 2745732 2746029 -148037524 - AluJb SINE Alu -22 290 1 625 290 16 36 chr11 2746112 2746360 -148037193 - MIR SINE MIR -12 250 8 295 280 118 48 chr11 2748478 2748923 -148034630 - L2 LINE L2 -11 3261 2803 242 301 88 0 chr11 2749397 2749510 -148034043 + L2 LINE L2 3178 3300 -13 433 293 16 0 chr11 2749600 2749723 -148033830 - MIR SINE MIR -38 224 100 2734 216 57 7 chr11 2749740 2750342 -148033211 + ERVL LTR ERVL 1518 2149 -3615 215 317 17 0 chr11 2750347 2750407 -148033146 - MIR SINE MIR -187 75 15 2123 108 4 0 chr11 2750658 2750975 -148032578 + AluSc SINE Alu 1 318 0 2501 67 0 26 chr11 2751209 2751521 -148032032 - AluY SINE Alu -7 304 1 210 176 0 0 chr11 2752167 2752218 -148031335 + GA-rich Low_complexity Low_complexity 2 52 0 1420 169 36 16 chr11 2752287 2752536 -148031017 + AluJo SINE Alu 42 295 -17 335 325 169 0 chr11 2752538 2752698 -148030855 - L2 LINE L2 -609 2705 2519 217 262 24 36 chr11 2752707 2752791 -148030762 + MER5A DNA MER1_type 107 189 0 2148 122 7 7 chr11 2753103 2753397 -148030156 + AluSq SINE Alu 1 294 -19 432 284 272 11 chr11 2753458 2754084 -148029469 - L2 LINE L2 -244 3028 2243 4854 129 304 86 chr11 2755374 2756767 -148026786 + pTR5 LTR ERV1 743 2438 0 216 315 112 11 chr11 2756878 2756967 -148026586 + MIR3 SINE MIR 57 154 -54 351 308 26 32 chr11 2757017 2757173 -148026380 + L1M4 LINE L1 2398 2552 -3594 444 204 59 35 chr11 2757182 2757382 -148026171 + MLT1J1 LTR MaLR 2 222 -187 262 277 212 65 chr11 2757378 2757562 -148025991 + MLT1J2 LTR MaLR 238 448 -2 * 345 284 79 22 chr11 2757723 2757952 -148025601 + L1M4 LINE L1 2716 2957 -3189 303 28 0 0 chr11 2757955 2757991 -148025562 + (TA)n Simple_repeat Simple_repeat 2 37 0 404 184 20 10 chr11 2758008 2758106 -148025447 - L1M4 LINE L1 -1425 4721 4623 2248 98 0 52 chr11 2759231 2759558 -148023995 - AluSg SINE Alu 0 310 1 324 350 47 14 chr11 2759952 2760166 -148023387 + MIR SINE MIR 32 252 -10 3324 203 21 78 chr11 2760491 2761518 -148022035 - LTR5 LTR ERVK 0 969 1 24 32 0 0 chr11 2761977 2762008 -148021545 + AT_rich Low_complexity Low_complexity 1 31 0 3019 235 22 39 chr11 2762028 2762280 -148021273 - L1MB3 LINE L1 -30 6153 5898 1998 127 35 0 chr11 2762280 2762563 -148020990 - AluSx SINE Alu -17 295 3 3019 235 22 39 chr11 2762563 2762673 -148020880 - L1MB3 LINE L1 -285 5898 5788 1935 135 3 43 chr11 2762673 2762998 -148020555 - AluSx SINE Alu 0 312 1 3019 235 22 39 chr11 2762998 2763992 -148019561 - L1MB3 LINE L1 -395 5788 4818 2249 97 3 3 chr11 2764037 2764337 -148019216 + AluSp SINE Alu 1 300 -13 1217 230 3 65 chr11 2764421 2764620 -148018933 - L1MA4 LINE L1 -175 6125 5960 1705 170 3 3 chr11 2764620 2764903 -148018650 - AluSx SINE Alu -29 283 1 1217 230 3 65 chr11 2764903 2765086 -148018467 - L1MA4 LINE L1 -340 5960 5767 261 259 105 35 chr11 2765124 2765267 -148018286 + HsTC2 DNA Tc2 1631 1783 -115 2029 134 3 31 chr11 2765272 2765592 -148017961 + AluSp SINE Alu 1 311 -2 357 239 97 9 chr11 2765780 2765893 -148017660 + MER5B DNA MER1_type 50 172 -6 633 235 51 0 chr11 2765998 2766194 -148017359 - MER6B DNA MER2_type 0 210 5 1379 128 27 14 chr11 2768087 2768306 -148015247 + AluSq SINE Alu 1 222 -91 744 231 280 3 chr11 2768310 2768639 -148014914 + SATR1 Satellite Satellite 48 467 -3 1889 182 99 24 chr11 2768669 2769476 -148014077 + SATR1 Satellite Satellite 1 866 -93 2773 106 12 2 chr11 2769505 2769929 -148013624 - Tigger1 DNA MER2_type -1404 1014 587 1360 187 120 4 chr11 2769930 2770197 -148013356 + AluJo SINE Alu 2 299 -3 422 195 46 0 chr11 2770252 2770339 -148013214 + Tigger1 DNA MER2_type 501 591 -1827 429 115 33 0 chr11 2770339 2770400 -148013153 - Alu SINE Alu -16 296 234 593 68 0 0 chr11 2770406 2770479 -148013074 + AluSg/x SINE Alu 178 250 -62 1225 177 9 19 chr11 2770479 2770530 -148013023 + AluJo SINE Alu 85 135 -177 2499 86 0 6 chr11 2770530 2770843 -148012710 + AluY SINE Alu 1 311 0 1225 177 9 19 chr11 2770843 2771006 -148012547 + AluJo SINE Alu 135 297 -15 455 220 0 0 chr11 2771007 2771098 -148012455 - Tigger1 DNA MER2_type -1827 591 501 1183 143 37 0 chr11 2771215 2771404 -148012149 - Tigger1 DNA MER2_type -1944 474 279 1202 177 80 17 chr11 2771431 2771668 -148011885 + AluJo SINE Alu 44 295 -17 1460 153 38 11 chr11 2771668 2771929 -148011624 - Tigger1 DNA MER2_type -2127 291 24 303 284 183 24 chr11 2772129 2772298 -148011255 - MIR3 SINE MIR -10 198 3 398 308 17 17 chr11 2772768 2772888 -148010665 + L2 LINE L2 3192 3311 -2 333 230 14 0 chr11 2772910 2772984 -148010569 + MER94 DNA DNA 1 75 -59 9379 93 0 28 chr11 2773084 2774501 -148009052 + HERVH LTR ERV1 1537 2914 -4799 1476 94 5 15 chr11 2774601 2774804 -148008749 + AluY SINE Alu 104 304 -7 1809 154 20 24 chr11 2774891 2775189 -148008364 - AluJb SINE Alu -15 297 1 2190 141 0 10 chr11 2775193 2775505 -148008048 - AluSx SINE Alu -3 309 1 2459 73 0 3 chr11 2775512 2775812 -148007741 - AluY SINE Alu -12 299 1 457 212 66 15 chr11 2775862 2775999 -148007554 + L1ME2 LINE L1 5429 5572 -592 325 202 90 19 chr11 2776000 2776175 -148007378 + L1ME2 LINE L1 5695 5888 -276 1923 155 10 3 chr11 2776547 2776850 -148006703 + AluSx SINE Alu 6 310 -2 245 302 190 17 chr11 2776871 2776987 -148006566 + L3 LINE CR1 1286 1421 -156 2219 93 10 0 chr11 2777304 2777593 -148005960 - AluSx SINE Alu -20 292 1 22 35 0 0 chr11 2777690 2777719 -148005834 + AT_rich Low_complexity Low_complexity 1 29 0 818 171 158 10 chr11 2777858 2778155 -148005398 + Tigger2a DNA MER2_type 1 443 -1 1847 131 0 22 chr11 2778275 2778550 -148005003 + AluSx SINE Alu 1 269 -43 1644 173 10 45 chr11 2778680 2778993 -148004560 - AluJo SINE Alu -8 304 3 367 308 206 40 chr11 2780405 2780730 -148002823 - L2 LINE L2 -2 3311 2933 3861 156 61 20 chr11 2781096 2781121 -148002432 + L1MB7 LINE L1 5142 5165 -1019 2502 88 0 0 chr11 2781121 2781428 -148002125 + AluSp SINE Alu 1 307 -6 3861 156 61 20 chr11 2781428 2782253 -148001300 + L1MB7 LINE L1 5165 6027 -157 2294 116 3 0 chr11 2782253 2782564 -148000989 - AluSx SINE Alu 0 312 1 3861 156 61 20 chr11 2782564 2782642 -148000911 + L1MB7 LINE L1 6027 6100 -84 1419 108 0 5 chr11 2782796 2782981 -148000572 - AluSx SINE Alu -128 184 1 644 236 100 115 chr11 2782983 2783322 -148000231 - L2 LINE L2 -12 3260 2927 2125 135 3 3 chr11 2784271 2784583 -147998970 - AluSx SINE Alu 0 312 1 806 189 0 0 chr11 2784585 2784717 -147998836 - FLAM_A SINE Alu -1 132 1 249 200 71 12 chr11 2785590 2785675 -147997878 - MIR SINE MIR -79 183 94 211 284 28 46 chr11 2785674 2785783 -147997770 + L2 LINE L2 2311 2417 -897 * 205 298 39 10 chr11 2786026 2786130 -147997423 + L2 LINE L2 2888 2994 -278 269 244 39 13 chr11 2786141 2786219 -147997334 + L2 LINE L2 3229 3308 -5 359 313 52 82 chr11 2786264 2786532 -147997021 + MIR SINE MIR 3 262 0 204 331 113 8 chr11 2787283 2787407 -147996146 - MIR3 SINE MIR -31 177 41 2474 62 3 7 chr11 2788060 2788365 -147995188 - AluY SINE Alu -7 304 1 1929 106 8 0 chr11 2788676 2788930 -147994623 + AluSq SINE Alu 52 307 -6 743 157 17 0 chr11 2788930 2789045 -147994508 - AluJo/FLAM SINE Alu -194 118 2 373 255 46 36 chr11 2789109 2789276 -147994277 + MIR SINE MIR 21 183 -62 228 333 50 17 chr11 2789608 2789728 -147993825 + L2 LINE L2 2930 3053 -219 320 273 13 0 chr11 2792148 2792225 -147991328 - MIR3 SINE MIR -5 203 126 187 270 32 16 chr11 2792534 2792597 -147990956 + MIR SINE MIR 108 171 -91 195 364 26 0 chr11 2793903 2793980 -147989573 + MIR SINE MIR 34 112 -150 1111 136 21 21 chr11 2794068 2794085 -147989468 + AluSg/x SINE Alu 120 136 -176 2301 112 16 0 chr11 2794085 2794390 -147989163 + AluSq SINE Alu 1 310 -3 1111 136 21 21 chr11 2794390 2794563 -147988990 + AluSg/x SINE Alu 135 310 -2 331 193 148 34 chr11 2794564 2794652 -147988901 - L1MC4 LINE L1 -1339 6703 6606 419 141 39 0 chr11 2794653 2794731 -147988822 - L1MB7 LINE L1 -84 6100 6020 724 85 11 0 chr11 2794732 2794826 -147988727 + AluJ/FLAM SINE Alu 2 96 -216 862 122 0 43 chr11 2794965 2795074 -147988479 + AluJo/FLAM SINE Alu 1 104 -198 2360 87 0 0 chr11 2795074 2795362 -147988191 - AluSc SINE Alu -20 289 2 862 122 0 43 chr11 2795362 2795391 -147988162 + AluJo/FLAM SINE Alu 104 133 -169 226 255 0 0 chr11 2795392 2795443 -147988110 - MIR SINE MIR -65 143 93 349 228 206 15 chr11 2795987 2796123 -147987430 + MIR SINE MIR 1 162 -100 1643 88 5 0 chr11 2796125 2796329 -147987224 + AluSx SINE Alu 9 213 -99 2014 138 0 10 chr11 2796611 2796908 -147986645 + AluSx SINE Alu 1 294 -18 27 0 0 0 chr11 2796908 2796935 -147986618 + AT_rich Low_complexity Low_complexity 1 27 0 2093 128 0 20 chr11 2797199 2797504 -147986049 - AluSx SINE Alu -13 299 1 806 193 223 0 chr11 2797624 2797826 -147985727 - Tigger2a DNA MER2_type -1 443 197 594 139 37 19 chr11 2797813 2797921 -147985632 - Tigger2a DNA MER2_type -324 110 1 * 1055 164 6 0 chr11 2798165 2798330 -147985223 + AluSg/x SINE Alu 124 289 -20 1646 176 68 56 chr11 2798369 2798496 -147985057 - Charlie1 DNA MER1_type -349 2412 2288 2065 112 30 3 chr11 2798496 2798791 -147984762 - AluSx SINE Alu -9 303 1 1646 176 68 56 chr11 2798791 2798974 -147984579 - Charlie1 DNA MER1_type -473 2288 2093 1939 137 0 11 chr11 2798974 2799287 -147984266 - AluSx SINE Alu 0 312 14 1646 176 68 56 chr11 2799287 2799419 -147984134 - Charlie1 DNA MER1_type -668 2093 1964 2494 87 0 0 chr11 2799419 2799730 -147983823 - AluY SINE Alu 0 311 1 2249 114 3 0 chr11 2799768 2800065 -147983488 - AluSg SINE Alu -12 298 1 1204 141 5 5 chr11 2800065 2800263 -147983290 - AluYa5 SINE Alu -1 310 113 1229 186 97 14 chr11 2801274 2801553 -147982000 + AluJo SINE Alu 5 306 -6 210 37 0 0 chr11 2801675 2801702 -147981851 + (A)n Simple_repeat Simple_repeat 1 27 0 198 0 0 0 chr11 2802889 2802911 -147980642 + (GAGAA)n Simple_repeat Simple_repeat 3 24 0 227 204 0 0 chr11 2803393 2803437 -147980116 + L2 LINE L2 3270 3313 0 344 98 33 0 chr11 2803515 2803576 -147979977 + (TTTAA)n Simple_repeat Simple_repeat 4 66 0 2372 88 0 7 chr11 2803586 2803892 -147979661 + AluSg SINE Alu 1 304 -6 2291 112 0 6 chr11 2803908 2804222 -147979331 + AluSq SINE Alu 2 313 0 775 216 6 28 chr11 2804227 2804403 -147979150 + MIR SINE MIR 91 262 0 2616 50 0 0 chr11 2804417 2804717 -147978836 + AluY SINE Alu 1 300 -11 2051 109 3 21 chr11 2804721 2805034 -147978519 + AluSx SINE Alu 3 310 0 228 163 0 0 chr11 2805103 2805146 -147978407 + T-rich Low_complexity Low_complexity 1 43 0 284 299 103 8 chr11 2805737 2805854 -147977699 + MIR SINE MIR 18 145 -63 2502 64 3 13 chr11 2805870 2806049 -147977504 - AluY SINE Alu 0 311 135 2378 91 7 0 chr11 2806049 2806347 -147977206 - AluSx SINE Alu -12 300 1 2502 64 3 13 chr11 2806347 2806481 -147977072 - AluY SINE Alu -176 135 1 2144 137 0 0 chr11 2806482 2806782 -147976771 - AluSx SINE Alu -12 300 1 2090 140 0 0 chr11 2806852 2807145 -147976408 - AluSx SINE Alu -19 293 1 184 304 109 0 chr11 2807498 2807590 -147975963 - MIR SINE MIR -90 118 17 2302 112 0 6 chr11 2807741 2808055 -147975498 - AluSx SINE Alu 0 312 1 226 221 233 0 chr11 2808224 2808310 -147975243 - MIR SINE MIR -1 261 156 1240 172 9 9 chr11 2808310 2808531 -147975022 - AluSg/x SINE Alu -7 303 83 680 384 0 0 chr11 2808631 2808782 -147974771 + C-rich Low_complexity Low_complexity 1 151 0 455 237 12 12 chr11 2808821 2808990 -147974563 + C-rich Low_complexity Low_complexity 1 169 0 2403 64 14 0 chr11 2809194 2809490 -147974063 - AluSq SINE Alu -13 300 1 238 238 155 0 chr11 2809490 2809574 -147973979 + MIR SINE MIR 163 259 -3 21 0 0 0 chr11 2810422 2810443 -147973110 + GC_rich Low_complexity Low_complexity 1 21 0 844 247 22 35 chr11 2810823 2811050 -147972503 + MIR SINE MIR 33 256 -6 447 199 69 46 chr11 2811197 2811328 -147972225 - MIR3 SINE MIR -14 194 61 187 259 52 35 chr11 2812014 2812072 -147971481 + MIR SINE MIR 109 167 -95 1538 192 17 10 chr11 2814164 2814456 -147969097 - AluJb SINE Alu -18 294 1 1737 133 4 12 chr11 2814631 2814887 -147968666 - AluSq SINE Alu -59 254 1 2176 85 7 29 chr11 2815201 2815507 -147968046 + AluSx SINE Alu 1 299 -13 2355 93 0 3 chr11 2815516 2815818 -147967735 + AluSx SINE Alu 5 305 -7 206 171 0 105 chr11 2816381 2816457 -147967096 + C-rich Low_complexity Low_complexity 5 72 0 216 171 0 24 chr11 2816619 2816660 -147966893 + (CGG)n Simple_repeat Simple_repeat 3 42 0 251 197 0 145 chr11 2817334 2817410 -147966143 - MIR3 SINE MIR -32 176 112 227 125 0 62 chr11 2818511 2818559 -147964994 + L2 LINE L2 3224 3268 -4 1949 146 3 19 chr11 2818676 2818984 -147964569 - AluJb SINE Alu -9 303 1 1452 224 14 0 chr11 2819230 2819516 -147964037 + AluJb SINE Alu 1 290 -22 2079 119 7 19 chr11 2819521 2819831 -147963722 + AluSx SINE Alu 6 311 -1 675 257 39 6 chr11 2819935 2820114 -147963439 - MER20 DNA MER1_type -1 218 34 2135 109 7 0 chr11 2820150 2820455 -147963098 - AluSq SINE Alu 0 307 1 809 119 9 0 chr11 2820559 2820668 -147962885 + AluSg SINE Alu 1 110 -200 269 262 0 0 chr11 2820817 2820878 -147962675 - L1MC5 LINE L1 -71 7890 7830 1557 196 0 50 chr11 2820973 2821150 -147962403 - AluJb SINE Alu -6 306 151 1768 123 0 0 chr11 2821150 2821385 -147962168 - AluSx SINE Alu -77 235 1 1557 196 0 50 chr11 2821385 2821529 -147962024 - AluJb SINE Alu -161 151 1 2117 100 0 39 chr11 2821611 2821921 -147961632 - AluY SINE Alu 0 311 14 344 266 69 58 chr11 2822001 2822174 -147961379 + MER5B DNA MER1_type 3 177 -1 1095 86 0 14 chr11 2822198 2822337 -147961216 - AluSq/x SINE Alu -176 137 1 2401 77 3 0 chr11 2822525 2822823 -147960730 - AluSp SINE Alu -14 299 1 1487 190 14 7 chr11 2822837 2823132 -147960421 - AluJb SINE Alu -15 297 1 1501 115 115 63 chr11 2823383 2823670 -147959883 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr11 2824421 2824442 -147959111 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 2824721 2824746 -147958807 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr11 2824898 2824919 -147958634 + AT_rich Low_complexity Low_complexity 1 21 0 326 302 63 57 chr11 2825788 2825947 -147957606 - MER117 DNA MER1_type 0 197 38 2520 74 0 3 chr11 2826021 2826333 -147957220 - AluY SINE Alu 0 311 1 2444 82 0 0 chr11 2826605 2826908 -147956645 - AluSg SINE Alu -6 304 2 2319 81 0 29 chr11 2827459 2827768 -147955785 + AluY SINE Alu 1 300 -11 2089 136 0 10 chr11 2827829 2828131 -147955422 + AluJb SINE Alu 4 302 -10 2216 114 0 19 chr11 2828688 2829005 -147954548 - AluSq SINE Alu -2 311 1 1999 100 64 0 chr11 2829529 2829810 -147953743 - AluSx SINE Alu -13 299 1 2211 102 0 43 chr11 2829812 2830135 -147953418 - AluSg SINE Alu -1 309 1 1474 184 60 14 chr11 2830851 2831133 -147952420 - AluJb SINE Alu -17 295 1 1020 159 6 0 chr11 2831246 2831416 -147952137 - AluSg/x SINE Alu 0 312 142 1842 152 14 0 chr11 2831425 2831715 -147951838 - AluSg SINE Alu -14 296 3 316 155 175 31 chr11 2831717 2831814 -147951739 - L1ME3A LINE L1 -260 5910 5800 190 0 32 32 chr11 2831989 2832020 -147951533 + (TTTTTA)n Simple_repeat Simple_repeat 1 31 0 428 253 42 93 chr11 2832507 2832819 -147950734 - L2 LINE L2 -91 3222 2927 571 267 179 35 chr11 2832865 2833090 -147950463 - L2 LINE L2 -493 2821 2535 2107 150 7 0 chr11 2833090 2833397 -147950156 + AluSx SINE Alu 1 309 -3 571 267 179 35 chr11 2833397 2833489 -147950064 - L2 LINE L2 -779 2535 2458 258 32 0 0 chr11 2833674 2833705 -147949848 + (CA)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr11 2833739 2833766 -147949787 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1049 174 117 68 chr11 2833779 2833911 -147949642 - AluJb SINE Alu -35 277 153 1842 117 80 4 chr11 2833911 2834185 -147949368 - AluSq SINE Alu -13 300 6 1049 174 117 68 chr11 2834185 2834196 -147949357 - AluJb SINE Alu -159 153 144 2104 119 3 7 chr11 2834196 2834490 -147949063 - AluSg1 SINE Alu -16 293 1 1049 174 117 68 chr11 2834490 2834609 -147948944 - AluJb SINE Alu -168 144 1 816 151 0 0 chr11 2834655 2834774 -147948779 - FRAM SINE Alu -8 168 50 1434 196 3 35 chr11 2834799 2835110 -147948443 - AluJo SINE Alu -11 301 1 222 128 0 0 chr11 2835461 2835500 -147948053 + (T)n Simple_repeat Simple_repeat 1 39 0 2453 77 0 0 chr11 2835815 2836113 -147947440 - AluY SINE Alu -13 298 1 202 320 16 41 chr11 2836113 2836226 -147947327 + MIR3 SINE MIR 22 133 -75 1868 143 37 14 chr11 2836632 2836926 -147946627 + AluSx SINE Alu 1 301 -11 694 214 81 39 chr11 2836949 2836992 -147946561 + L1MB7 LINE L1 3741 3781 -2365 2127 120 7 0 chr11 2836992 2837293 -147946260 + AluSg SINE Alu 1 303 -7 694 214 81 39 chr11 2837293 2837483 -147946070 + L1MB7 LINE L1 3781 3984 -2162 * 3453 175 113 46 chr11 2837476 2837535 -147946018 + L1MB7 LINE L1 4663 4717 -1467 2187 126 3 3 chr11 2837535 2837845 -147945708 - AluSx SINE Alu -2 310 1 3453 175 113 46 chr11 2837845 2837859 -147945694 + L1MB7 LINE L1 4717 4729 -1455 1687 173 10 10 chr11 2837859 2838160 -147945393 - AluJb SINE Alu -11 301 1 3453 175 113 46 chr11 2838160 2838432 -147945121 + L1MB7 LINE L1 4729 4981 -1203 2209 122 0 7 chr11 2838432 2838735 -147944818 - AluSx SINE Alu -11 301 1 3453 175 113 46 chr11 2838735 2838888 -147944665 + L1MB7 LINE L1 4981 5122 -1062 871 216 6 6 chr11 2838888 2839059 -147944494 + FAM SINE Alu 1 171 -4 3453 175 113 46 chr11 2839059 2839375 -147944178 + L1MB7 LINE L1 5122 5415 -769 2210 99 10 3 chr11 2839375 2839669 -147943884 + AluSg SINE Alu 1 296 -14 3453 175 113 46 chr11 2839669 2840275 -147943278 + L1MB7 LINE L1 5415 6184 0 1830 122 70 0 chr11 2840415 2840685 -147942868 + AluSx SINE Alu 1 289 -23 243 301 192 13 chr11 2840963 2841119 -147942434 + MIR SINE MIR 49 232 -30 2251 97 0 39 chr11 2841832 2842140 -147941413 + AluSq SINE Alu 1 296 -17 1777 139 18 14 chr11 2842279 2842456 -147941097 - AluSx SINE Alu 0 313 138 254 0 83 0 chr11 2842456 2842492 -147941061 + T-rich Low_complexity Low_complexity 2 40 0 2171 74 7 11 chr11 2842492 2842776 -147940777 - AluSg SINE Alu -27 283 1 1777 139 18 14 chr11 2842776 2842909 -147940644 - AluSx SINE Alu -174 139 1 1451 200 79 10 chr11 2842922 2843257 -147940296 - L1MB7 LINE L1 -7 6177 5817 200 106 15 61 chr11 2844076 2844142 -147939411 + (TTTTTG)n Simple_repeat Simple_repeat 1 63 0 394 148 0 0 chr11 2844164 2844218 -147939335 - Alu SINE Alu -248 54 1 832 220 36 0 chr11 2844246 2844414 -147939139 + FAM SINE Alu 1 174 -1 236 128 0 0 chr11 2844515 2844554 -147938999 - L1ME4a LINE L1 -23 6098 6060 2005 115 14 21 chr11 2844630 2844939 -147938614 - AluSx SINE Alu 0 307 1 287 61 41 0 chr11 2845431 2845480 -147938073 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1931 113 0 0 chr11 2845491 2845747 -147937806 - AluSq SINE Alu -53 260 5 2304 92 0 13 chr11 2845903 2846218 -147937335 - AluY SINE Alu 0 311 1 718 201 13 13 chr11 2846220 2846369 -147937184 - MER106A DNA MER1_type -55 181 33 2390 100 0 0 chr11 2846436 2846736 -147936817 - AluSq SINE Alu -12 301 2 212 0 36 0 chr11 2846738 2846766 -147936787 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1868 138 22 0 chr11 2846771 2847047 -147936506 - AluJb SINE Alu -30 282 1 1821 105 0 0 chr11 2847983 2848211 -147935342 + AluSx SINE Alu 1 228 -84 2156 113 0 3 chr11 2848731 2849023 -147934530 - AluSg1 SINE Alu -18 291 1 1856 141 3 36 chr11 2849225 2849531 -147934022 - AluSx SINE Alu -14 298 3 2024 154 0 0 chr11 2849742 2850048 -147933505 - AluSx SINE Alu -6 306 1 2092 131 13 0 chr11 2850255 2850561 -147932992 - AluSg SINE Alu 0 310 1 1974 121 3 70 chr11 2850742 2851073 -147932480 - AluSx SINE Alu -3 309 1 315 0 0 0 chr11 2852152 2852187 -147931366 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2012 132 4 0 chr11 2852189 2852470 -147931083 - AluSx SINE Alu -30 282 1 1740 117 120 0 chr11 2852544 2852810 -147930743 - AluSg SINE Alu -2 298 1 1590 199 0 0 chr11 2852838 2853129 -147930424 - AluJo SINE Alu -21 291 1 2277 94 3 0 chr11 2853331 2853629 -147929924 - AluSp SINE Alu -14 299 1 467 263 116 13 chr11 2853664 2853770 -147929783 - MER112 DNA MER1_type -4 256 162 1342 221 13 39 chr11 2853770 2854082 -147929471 + AluJo SINE Alu 1 304 -8 467 263 116 13 chr11 2854082 2854207 -147929346 - MER112 DNA MER1_type -98 162 1 1119 191 109 4 chr11 2854310 2854540 -147929013 + AluJb SINE Alu 1 254 -58 286 287 151 12 chr11 2854610 2854861 -147928692 - L1ME LINE L1 -335 5786 5501 1917 107 21 11 chr11 2855063 2855363 -147928190 - AluSq SINE Alu 0 303 1 2850 19 0 0 chr11 2855369 2855679 -147927874 - AluYb8 SINE Alu -8 310 1 713 104 0 0 chr11 2856047 2856143 -147927410 - AluSq/x SINE Alu -177 136 41 1601 119 171 4 chr11 2856171 2856422 -147927131 - AluSg1 SINE Alu -16 293 1 244 273 64 55 chr11 2857897 2858007 -147925546 - L2 LINE L2 -2 3270 3160 216 289 106 10 chr11 2858032 2858136 -147925417 + MIR SINE MIR 93 206 -56 1919 138 0 0 chr11 2858283 2858558 -147924995 - AluSx SINE Alu -37 275 1 1114 153 35 83 chr11 2858573 2858694 -147924859 - MER33 DNA MER1_type -2275 310 185 2382 95 3 0 chr11 2858694 2859000 -147924553 - AluSg SINE Alu -3 307 1 1114 153 35 83 chr11 2859000 2859191 -147924362 - MER33 DNA MER1_type -2400 185 13 191 247 82 0 chr11 2859255 2859328 -147924225 + L2 LINE L2 3019 3097 -175 738 183 15 8 chr11 2859577 2859708 -147923845 - FLAM_A SINE Alu -1 132 1 2402 105 0 0 chr11 2860156 2860462 -147923091 + AluSc SINE Alu 1 306 -3 238 287 129 0 chr11 2860505 2860606 -147922947 + MIR3 SINE MIR 85 198 -10 207 262 214 0 chr11 2860717 2860820 -147922733 + L2 LINE L2 3134 3258 -14 641 246 0 0 chr11 2861428 2861554 -147921999 + FLAM_A SINE Alu 1 126 -7 209 290 123 22 chr11 2861587 2861623 -147921930 + MIR SINE MIR 106 137 -125 1798 186 3 3 chr11 2861623 2861934 -147921619 + AluJo SINE Alu 1 311 -1 209 290 123 22 chr11 2861934 2862035 -147921518 + MIR SINE MIR 137 257 -5 2101 97 38 3 chr11 2862441 2862729 -147920824 - AluSx SINE Alu -14 298 1 2035 138 7 3 chr11 2862729 2863033 -147920520 - AluSq SINE Alu -8 305 1 2401 100 3 0 chr11 2863185 2863496 -147920057 - AluSx SINE Alu 0 312 1 221 245 0 0 chr11 2863792 2863841 -147919712 + MIR SINE MIR 59 107 -155 324 163 128 0 chr11 2863880 2863966 -147919587 - MIR SINE MIR -54 208 112 2008 126 3 21 chr11 2863968 2864253 -147919300 + AluSx SINE Alu 1 280 -32 188 33 0 33 chr11 2864266 2864296 -147919257 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 546 211 0 24 chr11 2864402 2864525 -147919028 + L2 LINE L2 3192 3311 -2 592 224 195 9 chr11 2864884 2865094 -147918459 - MIR SINE MIR 0 262 14 363 23 0 0 chr11 2865224 2865268 -147918285 + (CA)n Simple_repeat Simple_repeat 2 45 0 267 336 104 8 chr11 2865714 2865839 -147917714 - L2 LINE L2 0 3272 3136 968 179 0 6 chr11 2865856 2866011 -147917542 + FRAM SINE Alu 1 151 -161 244 0 0 0 chr11 2866011 2866038 -147917515 + (TAAA)n Simple_repeat Simple_repeat 2 108 0 677 173 0 0 chr11 2866067 2866171 -147917382 + AluJb SINE Alu 196 299 -13 272 116 23 0 chr11 2866408 2866451 -147917102 + MIR SINE MIR 102 145 -63 1206 157 114 0 chr11 2866454 2866690 -147916863 - Tigger7 DNA MER2_type -1 2486 2224 2301 91 10 0 chr11 2866696 2866992 -147916561 - AluSx SINE Alu -10 302 4 209 250 0 31 chr11 2867066 2867130 -147916423 + MIR SINE MIR 160 221 -41 1909 147 7 3 chr11 2867302 2867588 -147915965 - AluJb SINE Alu -12 300 14 319 312 96 25 chr11 2867701 2867858 -147915695 - MIR3 SINE MIR -14 194 27 2256 101 3 3 chr11 2867878 2868186 -147915367 - AluSx SINE Alu -4 308 1 2578 68 3 0 chr11 2868522 2868829 -147914724 - AluSp SINE Alu -5 308 1 579 204 74 0 chr11 2869065 2869173 -147914380 + FLAM_A SINE Alu 1 116 -17 23 33 0 0 chr11 2869631 2869661 -147913892 + AT_rich Low_complexity Low_complexity 1 30 0 376 273 136 8 chr11 2869692 2869824 -147913729 + MIR SINE MIR 14 162 -100 366 325 49 18 chr11 2869824 2869987 -147913566 - MIR SINE MIR -7 255 88 240 238 81 56 chr11 2870493 2870653 -147912900 - HAL1 LINE L1 -108 2399 2236 2165 123 0 23 chr11 2870736 2871045 -147912508 - AluSg SINE Alu -8 302 1 226 172 23 58 chr11 2871049 2871136 -147912417 + MER113 DNA MER1_type? 3 86 -435 1557 96 0 5 chr11 2871150 2871349 -147912204 - AluY SINE Alu -10 301 104 258 156 0 0 chr11 2871663 2871708 -147911845 + CT-rich Low_complexity Low_complexity 1 45 0 1902 136 0 7 chr11 2871708 2871987 -147911566 - AluSq SINE Alu -36 277 1 336 24 0 0 chr11 2872394 2872435 -147911118 + (CA)n Simple_repeat Simple_repeat 1 41 0 207 69 0 0 chr11 2872541 2872570 -147910983 + (T)n Simple_repeat Simple_repeat 1 29 0 502 187 19 0 chr11 2872875 2872982 -147910571 - FLAM_A SINE Alu -1 141 33 1535 206 18 4 chr11 2873342 2873618 -147909935 + AluJb SINE Alu 1 280 -32 240 35 0 0 chr11 2873620 2873649 -147909904 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2300 102 0 0 chr11 2874225 2874565 -147908988 - AluSq SINE Alu 0 340 1 275 154 0 0 chr11 2874734 2874786 -147908767 + L1M4 LINE L1 3416 3467 -2679 190 130 0 43 chr11 2874789 2874835 -147908718 + (TTTCC)n Simple_repeat Simple_repeat 5 48 0 2245 129 3 0 chr11 2874839 2875149 -147908404 - AluSq SINE Alu -2 311 1 2145 248 147 11 chr11 2875158 2876104 -147907449 + L1M4 LINE L1 3474 4548 -1598 2083 111 10 0 chr11 2876105 2876394 -147907159 + AluSx SINE Alu 1 292 -20 240 312 185 25 chr11 2876670 2876827 -147906726 - L3 LINE CR1 -110 1467 1286 1887 161 10 3 chr11 2876845 2877155 -147906398 - AluSx SINE Alu 0 312 1 180 0 0 0 chr11 2877544 2877564 -147905989 + (T)n Simple_repeat Simple_repeat 1 20 0 2300 98 0 7 chr11 2878002 2878308 -147905245 - AluY SINE Alu -7 304 1 180 0 0 0 chr11 2878310 2878330 -147905223 + (T)n Simple_repeat Simple_repeat 1 20 0 225 239 62 54 chr11 2878949 2879006 -147904547 - L1ME LINE L1 -293 5828 5773 1643 130 115 4 chr11 2879006 2879276 -147904277 - AluSx SINE Alu -12 300 1 225 239 62 54 chr11 2879276 2879348 -147904205 - L1ME LINE L1 -348 5773 5698 1430 182 4 30 chr11 2879420 2879552 -147904001 + AluJb SINE Alu 1 124 -188 207 0 0 0 chr11 2879552 2879575 -147903978 + (CA)n Simple_repeat Simple_repeat 2 24 0 1430 182 4 30 chr11 2879575 2879711 -147903842 + AluJb SINE Alu 124 262 -50 198 103 0 0 chr11 2879789 2879818 -147903735 + (CA)n Simple_repeat Simple_repeat 2 30 0 378 0 0 0 chr11 2879861 2879903 -147903650 + (CA)n Simple_repeat Simple_repeat 2 43 0 365 276 35 55 chr11 2879973 2880172 -147903381 - L1ME LINE L1 -758 5484 5290 32 43 0 0 chr11 2880280 2880326 -147903227 + AT_rich Low_complexity Low_complexity 1 46 0 616 148 157 0 chr11 2880752 2880867 -147902686 - FLAM_C SINE Alu 0 133 1 314 322 49 0 chr11 2880868 2880974 -147902579 - MIR SINE MIR -63 145 34 319 308 149 34 chr11 2881031 2881239 -147902314 + MIR SINE MIR 10 241 -21 2227 101 10 0 chr11 2881320 2881617 -147901936 + AluSq SINE Alu 2 301 -12 205 303 119 28 chr11 2881747 2881856 -147901697 - L2 LINE L2 -30 3283 3165 1530 186 65 48 chr11 2881902 2882044 -147901509 + L1MB7 LINE L1 5746 5884 -300 2111 134 0 0 chr11 2882044 2882342 -147901211 + AluSq SINE Alu 5 302 -11 1530 186 65 48 chr11 2882342 2882613 -147900940 + L1MB7 LINE L1 5884 6166 -18 1115 114 0 6 chr11 2883396 2883554 -147899999 - AluSg/x SINE Alu -22 290 134 1281 138 51 0 chr11 2883689 2883906 -147899647 + MER46A DNA MER2_type 9 236 0 26 64 0 0 chr11 2884303 2884350 -147899203 + AT_rich Low_complexity Low_complexity 1 47 0 2120 127 10 0 chr11 2884367 2884667 -147898886 - AluSx SINE Alu -9 303 1 571 174 9 28 chr11 2884829 2884938 -147898615 - AluJb SINE Alu -11 301 195 2019 124 3 26 chr11 2884988 2885294 -147898259 + AluSx SINE Alu 1 299 -13 2008 127 38 0 chr11 2885401 2885692 -147897861 - AluSx SINE Alu -10 302 1 1603 154 46 39 chr11 2885910 2886216 -147897337 - AluJo SINE Alu -4 308 1 3462 259 59 18 chr11 2886229 2886885 -147896668 + L2 LINE L2 1950 2672 -641 2259 99 0 13 chr11 2886885 2887198 -147896355 - AluY SINE Alu -2 309 1 3462 259 59 18 chr11 2887198 2887609 -147895944 + L2 LINE L2 2672 3065 -248 1676 188 10 0 chr11 2887617 2887909 -147895644 - AluJo SINE Alu -17 295 1 661 195 9 0 chr11 2887952 2888065 -147895488 - FLAM_C SINE Alu -24 119 6 342 296 8 8 chr11 2888109 2888241 -147895312 - L1MC4 LINE L1 -1013 7029 6898 321 207 94 47 chr11 2888345 2888472 -147895081 - FLAM_A SINE Alu -2 131 15 510 280 50 70 chr11 2888472 2888590 -147894963 - L1M4 LINE L1 -2458 3688 3569 1323 177 106 39 chr11 2888590 2888873 -147894680 + AluJo SINE Alu 3 304 -8 510 280 50 70 chr11 2888873 2889329 -147894224 - L1M4 LINE L1 -2577 3569 3125 374 228 44 9 chr11 2889489 2889603 -147893950 - L1M4 LINE L1 -3376 2770 2653 1032 167 36 50 chr11 2889619 2889840 -147893713 + AluJb SINE Alu 82 299 -13 1878 130 41 3 chr11 2890849 2891141 -147892412 - AluSx SINE Alu -9 303 1 2050 132 6 19 chr11 2891190 2891501 -147892052 - AluSq SINE Alu -6 307 1 451 263 93 45 chr11 2891513 2891760 -147891793 - L1ME4a LINE L1 -175 5946 5688 268 79 0 0 chr11 2891764 2891802 -147891751 + MER4E LTR ERV1 654 691 -75 27 0 0 0 chr11 2891885 2891912 -147891641 + AT_rich Low_complexity Low_complexity 1 27 0 383 267 23 46 chr11 2892012 2892143 -147891410 + MIR SINE MIR 134 261 -1 1550 169 59 0 chr11 2892809 2893106 -147890447 - AluJb SINE Alu 0 313 1 21 0 0 0 chr11 2893171 2893192 -147890361 + AT_rich Low_complexity Low_complexity 1 21 0 1576 177 53 14 chr11 2893251 2893534 -147890019 + AluJo SINE Alu 3 296 -16 2300 102 0 0 chr11 2893636 2893976 -147889577 - AluSq SINE Alu 0 340 1 275 154 0 0 chr11 2894145 2894197 -147889356 + L1MB3 LINE L1 3416 3467 -2679 190 130 0 43 chr11 2894200 2894246 -147889307 + (TTTCC)n Simple_repeat Simple_repeat 5 48 0 2245 129 3 0 chr11 2894250 2894560 -147888993 - AluSq SINE Alu -2 311 1 4234 191 86 89 chr11 2894569 2895516 -147888037 + L1MB3 LINE L1 3474 4423 -1760 1901 118 35 14 chr11 2895516 2895803 -147887750 + AluSx SINE Alu 1 293 -19 4234 191 86 89 chr11 2895803 2896101 -147887452 + L1MB3 LINE L1 4423 4720 -1463 1697 183 3 10 chr11 2896101 2896390 -147887163 - AluJb SINE Alu -25 287 1 4234 191 86 89 chr11 2896390 2896911 -147886642 + L1MB3 LINE L1 4720 5241 -942 1279 164 48 106 chr11 2896911 2897223 -147886330 + AluJo SINE Alu 5 298 -14 4234 191 86 89 chr11 2897223 2897381 -147886172 + L1MB3 LINE L1 5241 5398 -785 1777 146 43 0 chr11 2897381 2897661 -147885892 + AluSg SINE Alu 1 292 -18 4234 191 86 89 chr11 2897661 2897975 -147885578 + L1MB3 LINE L1 5398 5796 -387 447 104 15 0 chr11 2897975 2898042 -147885511 + U6 snRNA snRNA 40 107 0 4234 191 86 89 chr11 2898042 2898256 -147885297 + L1MB3 LINE L1 5796 6009 -174 1634 191 0 4 chr11 2899101 2899378 -147884175 - AluJo SINE Alu -36 276 1 28 48 0 0 chr11 2901203 2901245 -147882308 + AT_rich Low_complexity Low_complexity 1 42 0 1540 164 34 27 chr11 2901563 2901856 -147881697 - AluSx SINE Alu -17 295 1 252 330 0 31 chr11 2902641 2902738 -147880815 - MER5B DNA MER1_type -81 97 4 1328 69 0 6 chr11 2902834 2903009 -147880544 - L1PA3 LINE L1 -8 6147 5974 1098 192 14 23 chr11 2903165 2903384 -147880169 - AluJo SINE Alu -95 217 1 855 138 32 0 chr11 2903422 2903545 -147880008 - FLAM_C SINE Alu -16 127 1 190 369 0 15 chr11 2904547 2904612 -147878941 - L2 LINE L2 -20 3252 3189 2131 136 7 3 chr11 2904686 2904987 -147878566 - AluSx SINE Alu -10 302 1 1241 185 82 55 chr11 2905058 2905350 -147878203 - AluSx SINE Alu 0 312 13 2416 71 0 0 chr11 2905490 2905786 -147877767 + AluY SINE Alu 1 296 -15 1605 228 49 23 chr11 2905788 2906261 -147877292 - Charlie1a DNA MER1_type -969 486 2 1847 121 11 21 chr11 2906602 2906915 -147876638 + AluSc SINE Alu 1 310 0 1121 154 8 9 chr11 2906916 2907183 -147876370 + AluJb SINE Alu 1 312 0 280 280 112 0 chr11 2907535 2907642 -147875911 - MIR SINE MIR -79 183 65 22 35 0 0 chr11 2907643 2907672 -147875881 + AT_rich Low_complexity Low_complexity 1 29 0 2042 125 3 7 chr11 2907716 2908021 -147875532 - AluSp SINE Alu -9 304 1 180 0 0 0 chr11 2908070 2908090 -147875463 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1851 103 52 7 chr11 2908093 2908364 -147875189 - AluSq SINE Alu -30 283 1 2308 86 0 0 chr11 2908681 2908973 -147874580 - AluSc SINE Alu -17 292 1 1942 125 35 3 chr11 2909096 2909385 -147874168 - AluSx SINE Alu -14 298 1 608 172 114 41 chr11 2910490 2910698 -147872855 + MIR SINE MIR 42 252 -10 1979 163 0 0 chr11 2910907 2911207 -147872346 - AluSx SINE Alu -12 300 1 463 274 48 58 chr11 2911261 2911469 -147872084 - MER102a DNA MER1_type 0 330 125 2294 103 0 3 chr11 2911517 2911829 -147871724 - AluSx SINE Alu -1 311 1 230 382 18 0 chr11 2911831 2911941 -147871612 - MER5B DNA MER1_type -17 161 50 885 223 46 65 chr11 2911957 2912217 -147871336 - AluJo SINE Alu -57 255 1 187 200 100 0 chr11 2912226 2912276 -147871277 - MER5B DNA MER1_type -123 55 1 37 0 0 0 chr11 2912766 2912803 -147870750 + AT_rich Low_complexity Low_complexity 1 37 0 2165 137 3 3 chr11 2912961 2913267 -147870286 - AluSp SINE Alu -7 306 1 1552 118 111 80 chr11 2913331 2913620 -147869933 - AluSx SINE Alu -14 298 1 1825 127 0 68 chr11 2914894 2915218 -147868335 - AluSx SINE Alu -10 302 1 272 336 73 0 chr11 2915477 2915587 -147867966 - L2 LINE L2 -10 3262 3145 1481 196 17 24 chr11 2916065 2916361 -147867192 - AluJo SINE Alu -17 295 2 747 182 0 0 chr11 2917098 2917219 -147866334 + FLAM_C SINE Alu 1 121 -22 29 28 0 0 chr11 2917234 2917270 -147866283 + AT_rich Low_complexity Low_complexity 1 36 0 507 262 81 62 chr11 2917421 2917570 -147865983 + MIR SINE MIR 19 175 -87 2287 104 3 7 chr11 2917570 2917869 -147865684 + AluSg SINE Alu 1 298 -12 507 262 81 62 chr11 2917869 2917929 -147865624 + MIR SINE MIR 175 232 -30 216 0 0 0 chr11 2918716 2918740 -147864813 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 324 0 0 0 chr11 2918739 2918775 -147864778 + (TG)n Simple_repeat Simple_repeat 2 37 0 960 188 218 4 chr11 2918813 2919047 -147864506 - AluSg1 SINE Alu -25 284 1 2288 89 0 7 chr11 2919090 2919382 -147864171 + AluY SINE Alu 22 311 0 2132 110 45 7 chr11 2919507 2919798 -147863755 + AluSx SINE Alu 1 302 -10 286 47 0 0 chr11 2920766 2920809 -147862744 - AluSc SINE Alu 0 308 266 1389 94 0 0 chr11 2920810 2920981 -147862572 - AluSc SINE Alu -138 171 1 552 314 123 35 chr11 2922746 2923151 -147860402 + L2 LINE L2 2832 3272 0 339 270 75 63 chr11 2923349 2923400 -147860153 - Charlie8 DNA MER1_type -2231 186 137 1786 167 13 31 chr11 2923400 2923718 -147859835 + AluJo SINE Alu 1 312 0 339 270 75 63 chr11 2923718 2923825 -147859728 - Charlie8 DNA MER1_type -2280 137 26 2653 155 65 6 chr11 2924129 2924639 -147858914 + L1MB2 LINE L1 5591 6130 -41 2467 86 0 6 chr11 2924640 2924953 -147858600 + AluY SINE Alu 1 311 0 2148 109 44 7 chr11 2925078 2925371 -147858182 + AluSx SINE Alu 1 304 -8 286 47 0 0 chr11 2926338 2926381 -147857172 - AluSc SINE Alu 0 301 259 1411 88 0 0 chr11 2926382 2926553 -147857000 - AluSc SINE Alu -138 171 1 24 32 0 0 chr11 2927701 2927732 -147855821 + AT_rich Low_complexity Low_complexity 1 31 0 2493 80 10 0 chr11 2928168 2928470 -147855083 - AluSq SINE Alu -8 305 1 371 278 143 79 chr11 2928509 2928865 -147854688 - L1ME4a LINE L1 0 6121 5743 2093 119 3 34 chr11 2929071 2929391 -147854162 - AluSq SINE Alu -3 310 1 875 135 14 21 chr11 2929648 2929789 -147853764 - FLAM_C SINE Alu -3 140 1 2213 119 6 3 chr11 2930082 2930393 -147853160 - AluSx SINE Alu 0 312 1 1948 158 0 0 chr11 2930419 2930698 -147852855 - AluSx SINE Alu -31 281 3 2055 147 3 0 chr11 2930710 2931010 -147852543 - AluSq SINE Alu -12 301 1 994 193 0 0 chr11 2931750 2931911 -147851642 - AluJ SINE Alu -23 289 129 658 202 0 17 chr11 2932029 2932148 -147851405 - AluJ SINE Alu -190 122 6 2400 100 0 0 chr11 2932160 2932461 -147851092 - AluY SINE Alu -10 301 1 2251 114 7 0 chr11 2932522 2932830 -147850723 - AluSq SINE Alu -3 310 1 1087 83 0 0 chr11 2932839 2932972 -147850581 - AluSq/x SINE Alu -179 133 1 608 228 0 0 chr11 2933230 2933344 -147850209 + FLAM_C SINE Alu 3 116 -27 1835 98 117 4 chr11 2934308 2934573 -147848980 - AluSg1 SINE Alu -12 297 3 822 155 101 54 chr11 2934576 2934744 -147848809 - FRAM SINE Alu -6 170 1 591 101 20 20 chr11 2934775 2934874 -147848679 - U13 snRNA snRNA 0 104 6 647 206 30 0 chr11 2934882 2935013 -147848540 - FLAM_C SINE Alu -8 135 1 2238 123 0 0 chr11 2935067 2935367 -147848186 + AluSx SINE Alu 1 300 -12 294 267 78 35 chr11 2935792 2935908 -147847645 - L1ME1 LINE L1 -46 6120 6000 1934 109 0 0 chr11 2936020 2936267 -147847286 - AluSx SINE Alu -65 247 1 491 145 46 2 chr11 2936271 2936301 -147847252 - L1ME1 LINE L1 -740 5430 5403 670 117 31 92 chr11 2936301 2936344 -147847209 - L1MB3 LINE L1 -3 6180 6136 2294 73 29 35 chr11 2936344 2936657 -147846896 - AluY SINE Alu 0 311 1 670 117 31 92 chr11 2936657 2936776 -147846777 - L1MB3 LINE L1 -47 6136 6028 491 145 46 2 chr11 2936776 2936871 -147846682 - L1ME1 LINE L1 -767 5403 5338 848 61 0 0 chr11 2936902 2937000 -147846553 - AluY SINE Alu -220 98 1 492 256 23 51 chr11 2937010 2937225 -147846328 - L1M4 LINE L1 -2768 3378 3170 1252 196 19 16 chr11 2937229 2937546 -147846007 + L1M4 LINE L1 4987 5304 -842 1269 193 8 29 chr11 2937546 2937784 -147845769 + AluJb SINE Alu 1 233 -79 1798 150 31 11 chr11 2937786 2938073 -147845480 - AluSx SINE Alu -14 298 6 402 238 0 10 chr11 2938079 2938180 -147845373 + L1MA10 LINE L1 6205 6304 -30 285 73 0 0 chr11 2938217 2938258 -147845295 + Alu SINE Alu 256 296 -5 2161 116 10 0 chr11 2939656 2939948 -147843605 + AluSp SINE Alu 1 295 -18 23 0 0 0 chr11 2940526 2940549 -147843004 + AT_rich Low_complexity Low_complexity 1 23 0 10452 152 60 63 chr11 2940648 2942153 -147841400 + Tigger1 DNA MER2_type 1 1509 -909 1807 156 3 7 chr11 2942153 2942435 -147841118 + AluJb SINE Alu 1 281 -31 10452 152 60 63 chr11 2942435 2942648 -147840905 + Tigger1 DNA MER2_type 1509 1721 -697 1753 166 17 20 chr11 2942648 2942950 -147840603 + AluJb SINE Alu 3 303 -9 10452 152 60 63 chr11 2942950 2943656 -147839897 + Tigger1 DNA MER2_type 1721 2418 0 2016 150 0 7 chr11 2944349 2944649 -147838904 - AluSx SINE Alu -8 304 7 286 304 65 93 chr11 2945061 2945280 -147838273 + MIR SINE MIR 23 236 -26 1535 103 43 47 chr11 2945280 2945514 -147838039 - AluSg SINE Alu -14 296 64 286 304 65 93 chr11 2945514 2945541 -147838012 + MIR SINE MIR 236 262 0 277 208 19 0 chr11 2945566 2945619 -147837934 + L2 LINE L2 3208 3261 -11 314 352 56 16 chr11 2945695 2945820 -147837733 - L2 LINE L2 -4 3268 3139 684 149 116 25 chr11 2945900 2946021 -147837532 + FLAM_C SINE Alu 2 133 0 296 269 181 40 chr11 2946108 2946257 -147837296 + L2 LINE L2 2919 3088 -184 262 325 18 61 chr11 2946414 2946528 -147837025 + MIR SINE MIR 19 127 -81 28 29 0 0 chr11 2948315 2948350 -147835203 + AT_rich Low_complexity Low_complexity 1 35 0 214 237 46 118 chr11 2948703 2948855 -147834698 + MIR SINE MIR 53 193 -69 192 293 43 0 chr11 2949035 2949089 -147834464 + MIR SINE MIR 48 104 -104 1722 173 7 0 chr11 2949206 2949477 -147834076 + AluJo SINE Alu 1 273 -39 2260 67 34 17 chr11 2949575 2949872 -147833681 - AluY SINE Alu -9 302 1 1236 148 31 10 chr11 2950293 2950489 -147833064 + AluJo SINE Alu 1 200 -112 231 339 99 6 chr11 2950557 2950728 -147832825 - L2 LINE L2 -960 2354 2168 410 289 59 48 chr11 2950844 2951031 -147832522 - MIR SINE MIR -15 247 59 237 335 7 20 chr11 2951675 2951827 -147831726 + GA-rich Low_complexity Low_complexity 2 151 0 227 302 223 0 chr11 2953457 2953596 -147829957 - MIR SINE MIR -16 246 77 249 233 48 101 chr11 2954521 2954559 -147828994 - MER34B LTR ERV1 -65 500 462 2421 74 0 0 chr11 2954559 2954855 -147828698 - AluY SINE Alu -15 296 1 249 233 48 101 chr11 2954855 2955005 -147828548 - MER34B LTR ERV1 -103 462 322 538 243 15 7 chr11 2956083 2956219 -147827334 - MIR SINE MIR 0 262 126 1124 178 130 0 chr11 2957580 2957827 -147825726 - MLT2B3 LTR ERVL -233 321 43 587 140 0 11 chr11 2957828 2957921 -147825632 + HY4 scRNA scRNA 2 93 0 1023 167 0 0 chr11 2957933 2958083 -147825470 + AluJo SINE Alu 87 236 -76 373 269 50 56 chr11 2958359 2958519 -147825034 - L2 LINE L2 -87 3185 3027 643 118 0 11 chr11 2959176 2959269 -147824284 + HY4 scRNA scRNA 2 93 0 1440 146 0 0 chr11 2959282 2959488 -147824065 + AluJo SINE Alu 86 291 -21 388 257 67 8 chr11 2959762 2959883 -147823670 + MIR SINE MIR 21 150 -82 1162 0 50 6 chr11 2959925 2960084 -147823469 + (AGATG)n Simple_repeat Simple_repeat 5 170 0 309 264 104 110 chr11 2960110 2960208 -147823345 + MIR SINE MIR 7 106 -156 2400 64 4 0 chr11 2960208 2960524 -147823029 - AluSp SINE Alu 0 317 1 309 264 104 110 chr11 2960524 2960606 -147822947 + MIR SINE MIR 106 187 -75 436 231 77 50 chr11 2960781 2960940 -147822613 - MIR3 SINE MIR -17 191 28 2507 68 0 10 chr11 2961289 2961596 -147821957 + AluSq SINE Alu 1 304 -9 184 338 0 27 chr11 2961736 2961810 -147821743 - MIR3 SINE MIR 0 208 137 312 197 16 0 chr11 2963873 2963934 -147819619 + MIR SINE MIR 81 142 -66 194 333 78 35 chr11 2964004 2964145 -147819408 - L2 LINE L2 -156 3116 2970 2280 108 3 16 chr11 2964719 2965035 -147818518 - AluSx SINE Alu 0 312 1 436 281 64 27 chr11 2965059 2965495 -147818058 - L1MC4a LINE L1 -306 5815 5437 2131 131 0 0 chr11 2965497 2965794 -147817759 - AluJo SINE Alu -15 297 1 217 164 0 55 chr11 2966156 2966211 -147817342 + L2 LINE L2 2333 2384 -930 1301 138 0 96 chr11 2966295 2966440 -147817113 + AluJo SINE Alu 1 158 -154 1978 96 4 0 chr11 2966440 2966691 -147816862 + AluSx SINE Alu 36 287 -25 306 0 0 0 chr11 2966697 2966731 -147816822 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1301 138 0 96 chr11 2966731 2966838 -147816715 + AluJo SINE Alu 163 235 -77 2426 92 0 3 chr11 2966853 2967158 -147816395 + AluSq SINE Alu 1 304 -9 308 264 54 14 chr11 2967245 2967399 -147816154 + MLT1K LTR MaLR 99 262 -326 658 282 68 19 chr11 2967503 2967866 -147815687 + LTR16C LTR ERVL 52 489 -2 263 380 8 0 chr11 2969413 2969534 -147814019 - L2 LINE L2 -773 2541 2420 717 36 0 0 chr11 2969576 2969660 -147813893 - LTR7 LTR ERV1 -2 448 365 10187 95 3 10 chr11 2969760 2971233 -147812320 - HERVH LTR ERV1 -6251 1462 1 2295 66 5 2 chr11 2971235 2971593 -147811960 - LTR7 LTR ERV1 -2 448 1 1143 145 31 110 chr11 2971700 2971873 -147811680 - L1MA10 LINE L1 0 6334 6149 1906 143 6 16 chr11 2971873 2972188 -147811365 - AluSx SINE Alu 0 312 1 1980 100 14 11 chr11 2972193 2972503 -147811050 - AluSp SINE Alu 0 311 1 195 42 0 0 chr11 2972512 2972536 -147811017 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1143 145 31 110 chr11 2972536 2972663 -147810890 - L1MA10 LINE L1 -197 6137 6042 235 200 0 0 chr11 2972676 2972721 -147810832 + L2 LINE L2 3226 3270 -2 211 370 59 0 chr11 2973262 2973381 -147810172 + L2 LINE L2 2624 2749 -565 442 315 129 4 chr11 2973626 2973867 -147809686 + L2 LINE L2 2919 3189 -83 1699 205 109 17 chr11 2974598 2975018 -147808535 + LTR2B LTR ERV1 32 490 0 2393 59 0 0 chr11 2975349 2975638 -147807915 - AluSc SINE Alu -20 289 1 1758 104 107 4 chr11 2975995 2976275 -147807278 - AluSg1 SINE Alu 0 309 1 267 275 14 0 chr11 2978278 2978347 -147805206 - L3 LINE CR1 -14 1563 1494 312 288 0 0 chr11 2978429 2978502 -147805051 - MIR SINE MIR -139 123 51 2216 100 0 3 chr11 2978505 2978805 -147804748 + AluSx SINE Alu 7 305 -7 1061 146 12 0 chr11 2978805 2978976 -147804577 + AluSg/x SINE Alu 134 306 -6 2333 66 0 7 chr11 2981139 2981442 -147802111 + AluY SINE Alu 1 301 -10 187 302 66 90 chr11 2982674 2983008 -147800545 + L2 LINE L2 2947 3272 0 229 258 0 16 chr11 2983009 2983071 -147800482 + (TGAG)n Simple_repeat Simple_repeat 3 63 0 380 254 118 0 chr11 2985427 2985537 -147798016 - L2 LINE L2 0 3313 3191 839 167 0 0 chr11 2985591 2985723 -147797830 + FLAM_C SINE Alu 1 132 -11 25 0 0 0 chr11 2985723 2985748 -147797805 + AT_rich Low_complexity Low_complexity 1 25 0 454 279 100 79 chr11 2985765 2986205 -147797348 - L2 LINE L2 -179 3093 2621 1911 148 0 3 chr11 2986205 2986496 -147797057 + AluSx SINE Alu 1 290 -22 454 279 100 79 chr11 2986496 2986551 -147797002 - L2 LINE L2 -651 2621 2569 1586 154 82 4 chr11 2986908 2987188 -147796365 + AluJb SINE Alu 3 304 -8 252 366 131 34 chr11 2987606 2988018 -147795535 + L2 LINE L2 2819 3270 -2 1719 155 4 4 chr11 2988116 2988394 -147795159 + AluJb SINE Alu 23 300 -12 2141 111 7 0 chr11 2988414 2988712 -147794841 + AluSx SINE Alu 1 300 -12 1435 258 177 9 chr11 2988762 2988857 -147794696 + L1MC4 LINE L1 6969 7047 -995 2254 115 0 0 chr11 2988857 2989169 -147794384 + AluSx SINE Alu 1 312 0 1435 258 177 9 chr11 2989169 2989751 -147793802 + L1MC4 LINE L1 7047 7760 -282 2118 98 3 0 chr11 2989753 2990048 -147793505 + AluSg SINE Alu 1 296 -14 350 310 23 0 chr11 2990048 2990135 -147793418 + L1MC4 LINE L1 6615 6703 -1339 334 298 48 0 chr11 2990131 2990215 -147793338 - L1MC4 LINE L1 -1339 6703 6616 * 559 270 132 9 chr11 2990216 2990523 -147793030 + L1MC4 LINE L1 7592 8042 0 213 232 0 0 chr11 2990535 2990604 -147792949 + (TGAA)n Simple_repeat Simple_repeat 3 71 0 2150 81 3 11 chr11 2990936 2991240 -147792313 - AluSx SINE Alu 0 303 2 250 278 213 9 chr11 2991634 2991742 -147791811 - MIR3 SINE MIR -28 180 51 947 91 0 0 chr11 2992848 2992969 -147790584 + AluJ SINE Alu 3 123 -189 23 0 0 0 chr11 2992969 2992992 -147790561 + AT_rich Low_complexity Low_complexity 1 23 0 349 307 83 83 chr11 2993115 2993428 -147790125 + L2 LINE L2 2873 3185 -87 854 225 6 12 chr11 2993565 2993738 -147789815 + AluJ SINE Alu 123 294 -18 284 350 80 25 chr11 2994295 2994495 -147789058 + L2 LINE L2 2977 3187 -85 933 175 0 18 chr11 2994513 2994684 -147788869 - AluJo SINE Alu -13 299 132 1724 160 3 3 chr11 2994699 2994981 -147788572 - AluJb SINE Alu -30 282 1 318 291 12 0 chr11 2995427 2995513 -147788040 - L3 LINE CR1 -84 1493 1407 2170 119 0 0 chr11 2995542 2995854 -147787699 - AluSx SINE Alu 0 312 1 841 154 0 22 chr11 2995874 2996010 -147787543 - AluJo SINE Alu -169 133 1 1133 77 11 17 chr11 2996017 2996198 -147787355 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1448 145 0 4 chr11 2996224 2996451 -147787102 - AluSg/x SINE Alu -1 311 86 552 332 118 26 chr11 2996451 2996600 -147786953 - L3 LINE CR1 -196 1381 1247 1759 100 4 8 chr11 2996600 2996850 -147786703 - AluSx SINE Alu -6 306 58 552 332 118 26 chr11 2996850 2997116 -147786437 - L3 LINE CR1 -330 1247 928 257 189 19 0 chr11 2998246 2998299 -147785254 + MIR SINE MIR 112 165 -97 1767 162 10 10 chr11 2999064 2999372 -147784181 + AluJb SINE Alu 4 311 -1 1772 93 0 16 chr11 2999377 2999624 -147783929 + AluSx SINE Alu 1 243 -69 213 214 29 57 chr11 3000144 3000214 -147783339 - L2 LINE L2 -182 3090 3023 186 289 0 0 chr11 3000302 3000347 -147783206 - L2 LINE L2 -569 2745 2701 1132 149 9 33 chr11 3000351 3000566 -147782987 - AluJb SINE Alu -18 294 85 270 321 102 27 chr11 3000567 3000754 -147782799 - L2 LINE L2 -601 2713 2513 234 128 0 0 chr11 3001123 3001162 -147782391 + (TG)n Simple_repeat Simple_repeat 2 40 0 1938 107 68 0 chr11 3001693 3001974 -147781579 + AluSq SINE Alu 1 300 -13 1013 160 24 0 chr11 3001974 3002143 -147781410 + AluSg/x SINE Alu 132 304 -6 640 236 25 19 chr11 3002144 3002301 -147781252 - MIR SINE MIR -82 180 23 2043 102 7 3 chr11 3002773 3003066 -147780487 + AluSx SINE Alu 2 295 -17 1495 159 53 40 chr11 3003076 3003377 -147780176 + AluJb SINE Alu 1 305 -7 2533 40 0 0 chr11 3003378 3003675 -147779878 + AluY SINE Alu 1 297 -14 1408 157 132 18 chr11 3003684 3003964 -147779589 + AluJb SINE Alu 1 312 0 2060 126 7 0 chr11 3004320 3004630 -147778923 - AluSx SINE Alu 0 312 1 300 301 8 38 chr11 3007235 3007368 -147776185 + MIR3 SINE MIR 53 181 -27 966 266 40 4 chr11 3009683 3009918 -147773635 + MIR SINE MIR 2 248 -14 2431 54 10 0 chr11 3009918 3010215 -147773338 - AluY SINE Alu -11 300 1 966 266 40 4 chr11 3010215 3010231 -147773322 + MIR SINE MIR 248 262 0 2185 113 7 0 chr11 3010545 3010846 -147772707 - AluSx SINE Alu -9 303 1 2302 81 0 7 chr11 3011046 3011342 -147772211 - AluSg SINE Alu -16 294 1 626 244 42 63 chr11 3011499 3011668 -147771885 + MIR SINE MIR 18 182 -80 1988 139 0 3 chr11 3011668 3011970 -147771583 + AluJo SINE Alu 1 301 -11 626 244 42 63 chr11 3011970 3012038 -147771515 + MIR SINE MIR 182 250 -12 200 216 0 0 chr11 3012709 3012746 -147770807 + (TG)n Simple_repeat Simple_repeat 1 37 0 404 301 48 2 chr11 3012831 3012963 -147770590 + MIR SINE MIR 21 156 -74 463 250 119 18 chr11 3013489 3013657 -147769896 - MIR SINE MIR -57 205 21 372 234 0 75 chr11 3013684 3013791 -147769762 + MIR SINE MIR 68 166 -96 730 147 123 68 chr11 3014201 3014364 -147769189 + FAM SINE Alu 1 172 -3 1750 138 12 63 chr11 3014395 3014714 -147768839 - AluJb SINE Alu -9 303 1 604 245 18 31 chr11 3014844 3015007 -147768546 + MIR SINE MIR 41 201 -61 202 331 107 8 chr11 3015080 3015201 -147768352 + L2 LINE L2 2898 3030 -242 1855 130 0 0 chr11 3015251 3015513 -147768040 - AluSx SINE Alu -46 266 5 194 240 140 40 chr11 3016690 3016790 -147766763 + L2 LINE L2 2932 3041 -231 180 0 0 0 chr11 3017276 3017296 -147766257 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2236 99 0 13 chr11 3017511 3017823 -147765730 + AluSx SINE Alu 3 310 -2 2224 105 0 13 chr11 3018055 3018370 -147765183 + AluSx SINE Alu 1 311 -1 369 117 0 0 chr11 3020901 3020961 -147762592 + (CA)n Simple_repeat Simple_repeat 1 60 0 297 51 0 0 chr11 3021027 3021066 -147762487 + (CA)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chr11 3022165 3022195 -147761358 + GC_rich Low_complexity Low_complexity 1 30 0 203 95 48 0 chr11 3022419 3022461 -147761092 + (CGGGG)n Simple_repeat Simple_repeat 5 48 0 1486 201 8 0 chr11 3073454 3073722 -147709831 + AluJo SINE Alu 5 274 -38 338 304 199 0 chr11 3073963 3074124 -147709429 - MIR SINE MIR -9 253 61 216 267 93 23 chr11 3074735 3074821 -147708732 + L2 LINE L2 3169 3260 -12 23 0 0 0 chr11 3074926 3074949 -147708604 + AT_rich Low_complexity Low_complexity 1 23 0 188 268 18 0 chr11 3074958 3075014 -147708539 - MIR SINE MIR -21 241 185 21 0 0 0 chr11 3075018 3075039 -147708514 + AT_rich Low_complexity Low_complexity 1 21 0 466 274 43 0 chr11 3075065 3075182 -147708371 + L2 LINE L2 3187 3308 -5 363 239 197 28 chr11 3075212 3075354 -147708199 - MIR SINE MIR -84 178 13 13439 24 1 2 chr11 3075477 3077030 -147706523 - L1P LINE L1 -1043 5103 3553 1863 88 4 0 chr11 3077026 3077275 -147706278 - L1P LINE L1 -5671 475 226 * 1002 171 64 0 chr11 3077401 3077588 -147705965 + L1MB5 LINE L1 5968 6166 -8 1726 193 7 0 chr11 3077739 3078035 -147705518 + AluJb SINE Alu 3 300 -12 731 278 179 34 chr11 3078068 3078514 -147705039 - MLT1J LTR MaLR 0 511 1 2214 112 3 3 chr11 3078559 3078853 -147704700 + AluSq SINE Alu 1 294 -19 206 227 0 23 chr11 3078920 3078964 -147704589 + GA-rich Low_complexity Low_complexity 4 46 0 759 258 32 24 chr11 3079536 3079784 -147703769 - MIR SINE MIR -1 261 12 430 293 50 14 chr11 3080052 3080192 -147703361 + MIR SINE MIR 3 147 -115 2595 68 0 0 chr11 3080328 3080714 -147702839 + AluY SINE Alu 1 386 0 201 147 0 0 chr11 3081062 3081096 -147702457 + (CA)n Simple_repeat Simple_repeat 1 34 0 2261 114 0 3 chr11 3081163 3081462 -147702091 + AluSx SINE Alu 1 298 -14 274 269 0 13 chr11 3081592 3081670 -147701883 - L2 LINE L2 0 3272 3196 419 223 79 114 chr11 3081789 3081991 -147701562 - LTR67 LTR ERVL -9 548 354 786 257 31 9 chr11 3082571 3082793 -147700760 - MIR SINE MIR -2 260 34 185 232 152 18 chr11 3083256 3083368 -147700185 + L2 LINE L2 2842 2968 -304 313 264 79 36 chr11 3084185 3084325 -147699228 - MIR3 SINE MIR -42 166 21 237 235 98 10 chr11 3084842 3084944 -147698609 - MIR SINE MIR -4 258 148 12806 95 6 8 chr11 3085056 3086852 -147696701 - L1P LINE L1 -4355 1791 1 1023 207 14 33 chr11 3087057 3087106 -147696447 + MER58A DNA MER1_type 4 52 -2368 1628 158 62 11 chr11 3087106 3087378 -147696175 - AluJo SINE Alu -26 286 1 1023 207 14 33 chr11 3087378 3087541 -147696012 + MER58A DNA MER1_type 52 212 -12 199 409 36 0 chr11 3087543 3087653 -147695900 + L2 LINE L2 2868 2981 -291 438 243 181 33 chr11 3088115 3088325 -147695228 + MIR SINE MIR 2 242 -20 3237 110 15 25 chr11 3088894 3089414 -147694139 + L1MA6 LINE L1 5768 6282 -18 301 115 0 0 chr11 3089437 3089489 -147694064 - AluJo SINE Alu 0 302 251 1200 175 0 5 chr11 3089489 3089689 -147693864 - AluJo SINE Alu -113 199 1 46 33 0 0 chr11 3089718 3089778 -147693775 + AT_rich Low_complexity Low_complexity 1 60 0 1418 273 21 40 chr11 3090164 3090416 -147693137 - L2 LINE L2 -275 3038 2783 2198 102 3 38 chr11 3090416 3090594 -147692959 - AluSp SINE Alu -11 302 138 2951 6 0 9 chr11 3090594 3090913 -147692640 - AluYb8 SINE Alu -2 316 1 2198 102 3 38 chr11 3090913 3091047 -147692506 - AluSp SINE Alu -175 138 1 1418 273 21 40 chr11 3091047 3091320 -147692233 - L2 LINE L2 -530 2783 2524 1388 129 19 5 chr11 3091877 3092086 -147691467 + L1P3 LINE L1 10 221 -6240 327 267 199 17 chr11 3092485 3092694 -147690859 + MIR SINE MIR 10 247 -15 1693 133 13 63 chr11 3093081 3093302 -147690251 - MLT1A1 LTR MaLR 0 365 161 2396 100 0 0 chr11 3093302 3093613 -147689940 - AluY SINE Alu 0 311 1 1693 133 13 63 chr11 3093613 3093692 -147689861 - MLT1A1 LTR MaLR -204 161 80 999 136 7 7 chr11 3093698 3093853 -147689700 - LTR32 LTR ERVL 0 471 317 1879 182 32 15 chr11 3093932 3094273 -147689280 - LTR32 LTR ERVL -110 361 15 541 152 0 0 chr11 3094273 3094352 -147689201 - MLT1A1 LTR MaLR -295 79 1 272 277 54 36 chr11 3094581 3094693 -147688860 + L2 LINE L2 3158 3271 -1 542 283 61 100 chr11 3094726 3095087 -147688466 + L2 LINE L2 2924 3270 -2 487 250 123 26 chr11 3095635 3095837 -147687716 + MIR SINE MIR 38 262 0 2129 111 35 0 chr11 3096762 3097050 -147686503 + AluSx SINE Alu 1 298 -14 223 313 76 8 chr11 3097390 3097521 -147686032 - MIR SINE MIR -11 251 112 1876 154 0 39 chr11 3097615 3097921 -147685632 - AluJb SINE Alu -18 294 1 2398 126 3 15 chr11 3098221 3098562 -147684991 - MER1B DNA MER1_type 0 337 1 850 250 9 4 chr11 3098850 3099134 -147684419 - MIR SINE MIR -13 249 1 2422 94 3 0 chr11 3099770 3100077 -147683476 + AluSg SINE Alu 1 308 -2 263 340 108 30 chr11 3100205 3100537 -147683016 - L2 LINE L2 -395 2919 2562 481 306 128 37 chr11 3100653 3101248 -147682305 - L2 LINE L2 -979 2335 1687 520 264 54 0 chr11 3101505 3101653 -147681900 + L2 LINE L2 2191 2346 -968 1799 257 75 17 chr11 3101657 3102433 -147681120 + L2 LINE L2 2488 3312 -1 269 274 69 20 chr11 3102454 3102556 -147680997 - MIR SINE MIR -32 230 124 2419 82 0 0 chr11 3102566 3102860 -147680693 + AluY SINE Alu 1 294 -17 1737 77 0 0 chr11 3103778 3103986 -147679567 + AluY SINE Alu 1 208 -103 491 60 0 0 chr11 3103986 3104053 -147679500 + AluY SINE Alu 239 305 -4 271 349 0 0 chr11 3105237 3105323 -147678230 + L2 LINE L2 3186 3271 -1 351 0 0 0 chr11 3105432 3105471 -147678082 + (CA)n Simple_repeat Simple_repeat 2 40 0 235 167 0 62 chr11 3105930 3105978 -147677575 + MER58B DNA MER1_type 47 91 -250 1348 176 43 4 chr11 3107232 3107487 -147676066 + MER58B DNA MER1_type 76 340 -1 4290 154 18 72 chr11 3107511 3108421 -147675132 - L1MB8 LINE L1 -6 6172 5313 1812 174 31 3 chr11 3108439 3108766 -147674787 - L1PA16 LINE L1 -9 6157 5822 767 156 0 0 chr11 3108786 3108914 -147674639 - FRAM SINE Alu 0 40 1 355 316 151 34 chr11 3109285 3109636 -147673917 + L3 LINE CR1 948 1339 -238 1638 176 56 0 chr11 3109752 3110048 -147673505 + AluJb SINE Alu 1 311 0 2313 92 3 13 chr11 3110662 3110966 -147672587 - AluSq SINE Alu -12 301 1 2041 126 11 0 chr11 3111294 3111580 -147671973 + AluSx SINE Alu 1 289 -23 247 167 0 0 chr11 3111983 3112025 -147671528 + L3 LINE CR1 1533 1574 -3 264 231 0 46 chr11 3112345 3112410 -147671143 - MIR SINE MIR -64 144 83 429 221 65 26 chr11 3113171 3113325 -147670228 + MIR SINE MIR 79 238 -24 843 194 159 9 chr11 3113652 3113879 -147669674 + MIR SINE MIR 2 262 0 254 254 0 0 chr11 3114409 3114472 -147669081 - L1M4 LINE L1 -875 5271 5209 2487 53 3 10 chr11 3114773 3115076 -147668477 + AluY SINE Alu 1 301 -10 1314 223 70 76 chr11 3115079 3115283 -147668270 - L1M4 LINE L1 -1059 5087 4883 2182 134 0 0 chr11 3115283 3115582 -147667971 + AluSx SINE Alu 1 299 -13 1314 223 70 76 chr11 3115582 3115940 -147667613 - L1M4 LINE L1 -1263 4883 4525 227 30 0 30 chr11 3115940 3115973 -147667580 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 524 137 253 0 chr11 3115979 3116074 -147667479 - FLAM_C SINE Alu -14 119 1 1314 223 70 76 chr11 3116074 3116145 -147667408 - L1M4 LINE L1 -1626 4520 4450 2548 78 0 0 chr11 3116145 3116454 -147667099 - AluY SINE Alu -2 309 1 1314 223 70 76 chr11 3116454 3116525 -147667028 - L1M4 LINE L1 -1696 4450 4378 1994 234 81 47 chr11 3116525 3117071 -147666482 - Charlie7 DNA MER1_type -1125 1487 903 2209 100 0 0 chr11 3117071 3117379 -147666174 + AluSc SINE Alu 1 308 0 1994 234 81 47 chr11 3117379 3117621 -147665932 - Charlie7 DNA MER1_type -1709 903 671 586 197 87 104 chr11 3117638 3117821 -147665732 + MER58A DNA MER1_type 45 224 0 1185 268 138 53 chr11 3117824 3118447 -147665106 - Charlie7 DNA MER1_type -1936 676 1 1228 42 24 0 chr11 3118917 3119082 -147664471 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 211 318 16 0 chr11 3119106 3119169 -147664384 + MIR SINE MIR 76 139 -69 2304 95 0 32 chr11 3119627 3119942 -147663611 + AluSx SINE Alu 1 305 -7 1022 166 37 0 chr11 3120601 3120764 -147662789 + AluJo SINE Alu 1 169 -143 1451 85 0 40 chr11 3120824 3121023 -147662530 + AluSg/x SINE Alu 105 295 -15 214 191 107 71 chr11 3121364 3121448 -147662105 - L2 LINE L2 0 3272 3186 718 178 0 0 chr11 3121628 3121735 -147661818 + FLAM_C SINE Alu 24 130 -13 192 47 47 23 chr11 3122482 3122525 -147661028 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 201 264 0 19 chr11 3122614 3122667 -147660886 - L2 LINE L2 -8 3264 3213 924 201 126 10 chr11 3122668 3122867 -147660686 + MER58A DNA MER1_type 2 223 -1 462 183 139 17 chr11 3122876 3122991 -147660562 + L1ME3 LINE L1 6027 6155 -7 2018 125 27 10 chr11 3123096 3123391 -147660162 + AluSx SINE Alu 7 306 -6 23 33 0 0 chr11 3123391 3123421 -147660132 + AT_rich Low_complexity Low_complexity 1 30 0 1254 100 0 0 chr11 3123953 3124113 -147659440 - AluSg/x SINE Alu -16 294 135 253 291 35 0 chr11 3124451 3124537 -147659016 - MIR SINE MIR -107 155 67 279 213 17 43 chr11 3125174 3125263 -147658290 - HERV16 LTR ERVL -2848 2148 2082 1222 131 159 19 chr11 3125298 3125544 -147658009 + L1MB7 LINE L1 5839 6118 -66 776 214 0 0 chr11 3125545 3125676 -147657877 + FLAM_C SINE Alu 2 132 -11 1539 188 3 14 chr11 3125714 3126001 -147657552 - AluJo SINE Alu -20 292 9 2373 76 3 0 chr11 3126300 3126589 -147656964 + AluSq SINE Alu 1 290 -23 1232 255 79 44 chr11 3127055 3127241 -147656312 + MLT1K LTR MaLR 3 181 -295 1775 140 12 64 chr11 3127241 3127570 -147655983 - AluJb SINE Alu 0 312 1 1232 255 79 44 chr11 3127570 3127838 -147655715 + MLT1K LTR MaLR 181 473 -3 2033 155 3 0 chr11 3128071 3128375 -147655178 + AluJb SINE Alu 1 305 -7 2200 87 13 23 chr11 3128917 3129053 -147654500 + AluSx SINE Alu 1 137 -175 2305 93 7 3 chr11 3129053 3129354 -147654199 + AluSq SINE Alu 1 302 -11 2200 87 13 23 chr11 3129354 3129517 -147654036 + AluSx SINE Alu 137 297 -15 4234 162 50 72 chr11 3129566 3129712 -147653841 + L1MB5 LINE L1 4967 5115 -1065 188 83 0 28 chr11 3129712 3129748 -147653805 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1785 144 4 11 chr11 3129754 3130024 -147653529 - AluSx SINE Alu -38 274 7 4234 162 50 72 chr11 3130024 3130107 -147653446 + L1MB5 LINE L1 5120 5203 -977 2524 56 0 7 chr11 3130107 3130410 -147653143 + AluY SINE Alu 1 301 -10 753 216 0 8 chr11 3130413 3130547 -147653006 + FLAM_C SINE Alu 1 133 0 4234 162 50 72 chr11 3130547 3131064 -147652489 + L1MB5 LINE L1 5205 5547 -633 2199 109 3 0 chr11 3131064 3131358 -147652195 + AluSc SINE Alu 1 295 -14 4234 162 50 72 chr11 3131358 3131978 -147651575 + L1MB5 LINE L1 5547 6180 0 36261 85 12 18 chr11 3132109 3135084 -147648469 + L1PA6 LINE L1 240 3163 -2991 2430 76 0 10 chr11 3135084 3135398 -147648155 + AluY SINE Alu 1 311 0 36261 85 12 18 chr11 3135398 3138373 -147645180 + L1PA6 LINE L1 3163 6154 0 468 137 86 26 chr11 3138403 3138520 -147645033 + MIR SINE MIR 69 192 -70 236 177 89 137 chr11 3138553 3138620 -147644933 + Charlie8 DNA MER1_type 36 96 -2321 2036 148 0 0 chr11 3138620 3138918 -147644635 + AluSx SINE Alu 1 298 -14 236 177 89 137 chr11 3138918 3138974 -147644579 + Charlie8 DNA MER1_type 96 153 -2264 1652 192 0 7 chr11 3138976 3139247 -147644306 + AluJb SINE Alu 1 269 -43 903 143 8 0 chr11 3139466 3139592 -147643961 - FLAM_A SINE Alu -2 131 5 254 309 52 10 chr11 3139624 3139721 -147643832 + L2 LINE L2 3122 3222 -50 3319 256 63 23 chr11 3140146 3141047 -147642506 + L1M4b LINE L1 11 947 -5912 1285 167 0 39 chr11 3141047 3141108 -147642445 + AluJo SINE Alu 84 146 -166 301 93 37 0 chr11 3141108 3141162 -147642391 + L1PA8 LINE L1 6117 6172 0 1285 167 0 39 chr11 3141162 3141333 -147642220 + AluJo SINE Alu 146 307 -5 2873 204 84 44 chr11 3141334 3141718 -147641835 + L1M4b LINE L1 945 1312 -5647 224 30 30 0 chr11 3141718 3141751 -147641802 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2873 204 84 44 chr11 3141751 3142247 -147641306 + L1M4b LINE L1 1312 1787 -5172 1748 148 7 4 chr11 3142247 3142517 -147641036 + AluSx SINE Alu 37 307 -5 2873 204 84 44 chr11 3142517 3142995 -147640558 + L1M4b LINE L1 1787 2369 -4590 1227 259 100 92 chr11 3142995 3143310 -147640243 - L2 LINE L2 -31 3282 2971 2187 108 3 0 chr11 3143310 3143597 -147639956 - AluSx SINE Alu -24 288 1 1227 259 100 92 chr11 3143597 3144224 -147639329 - L2 LINE L2 -342 2971 2327 1509 186 13 16 chr11 3144224 3144531 -147639022 + L1M4 LINE L1 5027 5332 -814 1736 167 20 26 chr11 3144531 3144837 -147638716 - AluSx SINE Alu -6 306 3 24 32 0 0 chr11 3144845 3144876 -147638677 + AT_rich Low_complexity Low_complexity 1 31 0 1752 110 13 77 chr11 3144876 3144991 -147638562 + L1P4 LINE L1 5476 5597 -569 2602 57 3 6 chr11 3144991 3145305 -147638248 - AluSp SINE Alu 0 313 1 1752 110 13 77 chr11 3145305 3145489 -147638064 + L1P4 LINE L1 5597 5756 -410 1000 105 0 26 chr11 3145501 3145654 -147637899 + AluJo SINE Alu 1 149 -163 21 0 0 0 chr11 3145776 3145797 -147637756 + AT_rich Low_complexity Low_complexity 1 21 0 1599 173 26 4 chr11 3146055 3146326 -147637227 - AluJo SINE Alu -30 282 6 311 216 137 20 chr11 3146754 3146856 -147636697 - MIR SINE MIR -27 235 122 827 160 30 15 chr11 3147088 3147219 -147636334 + FLAM_A SINE Alu 1 133 0 212 0 36 0 chr11 3147246 3147274 -147636279 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1211 128 35 66 chr11 3147333 3147559 -147635994 - MER20 DNA MER1_type 0 219 1 804 123 0 0 chr11 3147600 3147714 -147635839 - AluSg SINE Alu -23 289 176 803 114 0 0 chr11 3147714 3147819 -147635734 - AluSg SINE Alu -205 105 1 2053 149 0 9 chr11 3148606 3148921 -147634632 - AluJo SINE Alu 0 312 1 261 367 43 7 chr11 3148921 3149060 -147634493 + MIR SINE MIR 92 235 -27 252 336 35 9 chr11 3149097 3149213 -147634340 - MIR SINE MIR -27 235 117 567 161 108 0 chr11 3149268 3149398 -147634155 + L1MB7 LINE L1 6041 6184 0 1957 144 0 13 chr11 3149520 3149825 -147633728 - AluSx SINE Alu -11 301 1 220 246 0 0 chr11 3150409 3150454 -147633099 + CT-rich Low_complexity Low_complexity 5 52 -9 2222 112 7 0 chr11 3150454 3150757 -147632796 - AluSq SINE Alu -8 305 1 220 246 0 0 chr11 3150757 3150768 -147632785 + CT-rich Low_complexity Low_complexity 51 61 0 352 296 148 0 chr11 3151282 3151397 -147632156 + MIR SINE MIR 23 154 -108 287 333 8 0 chr11 3151879 3152011 -147631542 + (TG)n Simple_repeat Simple_repeat 2 134 0 452 308 39 19 chr11 3153134 3153342 -147630211 - L2 LINE L2 -196 3076 2865 30345 30 4 1 chr11 3153497 3157831 -147625722 + L1PA3 LINE L1 1811 6155 0 2602 119 45 31 chr11 3158110 3158490 -147625063 + MSTA LTR MaLR 1 389 -39 1954 144 10 13 chr11 3158490 3158802 -147624751 - AluSx SINE Alu -1 311 1 2602 119 45 31 chr11 3158802 3158840 -147624713 + MSTA LTR MaLR 389 425 -3 1771 135 114 3 chr11 3160143 3160440 -147623113 + MER7A DNA MER2_type 2 329 -17 3565 139 11 20 chr11 3160446 3161006 -147622547 - MER6A DNA MER2_type -50 555 1 2299 74 7 13 chr11 3161097 3161395 -147622158 + AluY SINE Alu 1 296 -15 2148 108 17 3 chr11 3161418 3161740 -147621813 + AluSx SINE Alu 1 312 0 190 246 53 18 chr11 3162116 3162173 -147621380 + L2 LINE L2 3004 3062 -210 858 140 22 0 chr11 3162581 3162717 -147620836 + AluJb SINE Alu 1 139 -173 233 318 149 0 chr11 3162921 3163028 -147620525 + L2 LINE L2 3191 3313 0 350 303 114 18 chr11 3163535 3163734 -147619819 + MIR3 SINE MIR 2 220 -42 1124 231 12 16 chr11 3164009 3164252 -147619301 + MIR SINE MIR 12 253 -9 1997 97 6 74 chr11 3164256 3164567 -147618986 + AluSx SINE Alu 1 290 -22 314 295 66 41 chr11 3164605 3164682 -147618871 + L2 LINE L2 3142 3225 -47 2423 155 77 10 chr11 3164682 3165083 -147618470 - MSTA LTR MaLR 0 428 1 314 295 66 41 chr11 3165083 3165127 -147618426 + L2 LINE L2 3225 3266 -6 418 302 26 0 chr11 3165163 3165279 -147618274 + MIR SINE MIR 75 193 -69 449 267 17 33 chr11 3165762 3165930 -147617623 + MIR3 SINE MIR 23 186 -22 305 283 0 33 chr11 3165930 3166022 -147617531 + MIR3 SINE MIR 83 171 -37 375 302 142 12 chr11 3166275 3166444 -147617109 + MIR3 SINE MIR 1 191 -17 512 299 92 5 chr11 3166716 3166900 -147616653 + MIR SINE MIR 29 228 -34 201 301 14 14 chr11 3167440 3167513 -147616040 - MIR SINE MIR -98 164 92 216 176 0 0 chr11 3167801 3167835 -147615718 - L2 LINE L2 -14 3299 3266 798 186 37 12 chr11 3167918 3168079 -147615474 - MIR SINE MIR -17 245 81 622 301 37 50 chr11 3168066 3168365 -147615188 - L2 LINE L2 -149 3123 2829 * 2347 172 161 47 chr11 3168630 3169095 -147614458 - L1MD2 LINE L1 -1 6358 5805 2428 84 0 0 chr11 3169095 3169392 -147614161 - AluSg SINE Alu -13 297 1 2347 172 161 47 chr11 3169392 3169541 -147614012 - L1MD2 LINE L1 -554 5805 5674 311 339 42 52 chr11 3169542 3169587 -147613966 - L2 LINE L2 -563 2751 2707 1926 156 7 13 chr11 3169587 3169888 -147613665 - AluJo SINE Alu -13 299 1 311 339 42 52 chr11 3169888 3170034 -147613519 - L2 LINE L2 -607 2707 2562 1763 134 76 0 chr11 3171088 3171371 -147612182 + AluJb SINE Alu 1 295 -17 201 312 43 35 chr11 3172500 3172641 -147610912 + MIR3 SINE MIR 50 191 -17 1884 176 23 0 chr11 3172730 3173031 -147610522 - AluJb SINE Alu -4 308 1 517 267 74 57 chr11 3173306 3173602 -147609951 - L2 LINE L2 -1 3312 3012 2924 190 58 18 chr11 3173714 3174340 -147609213 + L1ME2 LINE L1 5504 6154 -10 660 201 44 87 chr11 3174354 3174596 -147608957 + L1ME3 LINE L1 5915 6154 -12 648 158 17 0 chr11 3174653 3174773 -147608780 - MER5B DNA MER1_type -56 122 1 47 0 0 0 chr11 3174848 3174895 -147608658 + AT_rich Low_complexity Low_complexity 1 47 0 337 157 0 0 chr11 3174895 3174946 -147608607 - MER66A LTR ERV1 -140 338 288 363 323 16 0 chr11 3175004 3175128 -147608425 - L2 LINE L2 -468 2846 2721 222 284 203 42 chr11 3175273 3175583 -147607970 - L2 LINE L2 -800 2514 2155 1016 184 6 6 chr11 3175633 3175807 -147607746 + AluJb SINE Alu 138 311 -1 737 193 42 31 chr11 3175854 3176046 -147607507 - L2 LINE L2 0 3313 3120 2063 115 0 7 chr11 3176209 3176512 -147607041 - AluSg SINE Alu 0 301 1 1429 199 10 34 chr11 3176529 3176820 -147606733 - AluJo SINE Alu -28 284 1 2339 93 0 0 chr11 3176830 3177119 -147606434 - AluSc SINE Alu -20 289 1 748 185 15 0 chr11 3177183 3177313 -147606240 + FLAM_A SINE Alu 1 132 -1 1965 86 90 21 chr11 3177643 3177922 -147605631 + AluSq SINE Alu 1 298 -15 182 105 26 0 chr11 3178373 3178411 -147605142 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 5676 187 70 8 chr11 3178675 3179908 -147603645 + Charlie1a DNA MER1_type 1 1309 -146 1736 149 76 4 chr11 3179965 3180240 -147603313 - AluJo SINE Alu -17 295 1 1724 180 20 10 chr11 3180411 3180706 -147602847 - AluJb SINE Alu -14 298 1 474 263 26 0 chr11 3180807 3180921 -147602632 + L2 LINE L2 3192 3308 -5 216 0 0 0 chr11 3181247 3181271 -147602282 + (TTA)n Simple_repeat Simple_repeat 2 25 0 682 208 21 0 chr11 3182273 3182417 -147601136 - MIR SINE MIR -48 214 68 381 286 43 19 chr11 3182475 3182636 -147600917 - MIR SINE MIR -90 172 8 239 344 43 0 chr11 3182674 3182767 -147600786 + L2 LINE L2 3206 3302 -11 2406 72 3 3 chr11 3182966 3183258 -147600295 - AluSx SINE Alu -19 293 2 245 313 63 46 chr11 3183575 3183726 -147599827 - MIR SINE MIR -78 184 33 234 302 47 35 chr11 3184089 3184175 -147599378 + MIR SINE MIR 37 123 -139 23 0 0 0 chr11 3185089 3185112 -147598441 + AT_rich Low_complexity Low_complexity 1 23 0 3841 143 46 113 chr11 3185113 3185367 -147598186 - L1MB5 LINE L1 -16 6158 5889 2255 101 0 3 chr11 3185367 3185674 -147597879 - AluY SINE Alu -5 306 1 2052 118 40 0 chr11 3185679 3185975 -147597578 - AluSx SINE Alu -4 308 1 3841 143 46 113 chr11 3185975 3186096 -147597457 - L1MB5 LINE L1 -289 5885 5757 2593 65 3 0 chr11 3186096 3186402 -147597151 - AluSp SINE Alu -6 307 1 3841 143 46 113 chr11 3186402 3186541 -147597012 - L1MB5 LINE L1 -417 5757 5610 507 80 13 0 chr11 3186541 3186616 -147596937 + L1PA10 LINE L1 6093 6168 0 3841 143 46 113 chr11 3186616 3187093 -147596460 - L1MB5 LINE L1 -564 5610 5221 503 331 90 53 chr11 3187131 3187347 -147596206 + L2 LINE L2 2899 3135 -137 2348 100 10 0 chr11 3187347 3187656 -147595897 - AluSq SINE Alu -1 312 1 503 331 90 53 chr11 3187656 3187795 -147595758 + L2 LINE L2 3135 3267 -5 499 257 169 8 chr11 3187880 3188117 -147595436 - L2 LINE L2 0 3313 3039 350 289 75 43 chr11 3188144 3188331 -147595222 + MIR SINE MIR 20 212 -50 530 167 0 0 chr11 3188705 3188789 -147594764 + AluSg/x SINE Alu 201 284 -26 2157 151 39 5 chr11 3188789 3189174 -147594379 + L1MB7 LINE L1 5769 6166 -18 1822 149 17 40 chr11 3189187 3189489 -147594064 - AluJb SINE Alu -17 295 1 1617 196 0 11 chr11 3189614 3189941 -147593612 - AluJo SINE Alu 0 324 1 2484 79 0 0 chr11 3190410 3190715 -147592838 + AluY SINE Alu 1 305 -6 2287 91 3 7 chr11 3190725 3191023 -147592530 + AluSc SINE Alu 1 297 -12 2330 93 0 7 chr11 3191690 3191991 -147591562 + AluY SINE Alu 1 299 -12 1925 121 0 54 chr11 3192543 3192856 -147590697 - AluSx SINE Alu -16 296 1 210 59 0 29 chr11 3193103 3193137 -147590416 - MIR SINE MIR -14 248 216 283 238 0 16 chr11 3193307 3193370 -147590183 - MIR SINE MIR -6 256 195 1346 122 0 0 chr11 3193373 3193553 -147590000 - AluSg/x SINE Alu -13 297 118 2292 93 0 3 chr11 3193720 3194011 -147589542 - AluSg SINE Alu -20 290 1 3280 144 69 29 chr11 3194282 3194649 -147588904 - L1PB4 LINE L1 -3 6153 5747 279 0 0 0 chr11 3194649 3194680 -147588873 + (TG)n Simple_repeat Simple_repeat 2 32 0 3280 144 69 29 chr11 3194680 3194965 -147588588 - L1PB4 LINE L1 -409 5747 5475 21 57 0 0 chr11 3195090 3195125 -147588428 + AT_rich Low_complexity Low_complexity 1 35 0 2562 88 3 3 chr11 3195291 3195644 -147587909 - L1PA13 LINE L1 -7 6156 5804 305 179 253 0 chr11 3195646 3195741 -147587812 + Charlie1 DNA MER1_type 2638 2756 -5 263 241 205 9 chr11 3195829 3195941 -147587612 - L2 LINE L2 0 3272 3139 324 333 109 10 chr11 3196205 3196406 -147587147 - MIR SINE MIR -36 226 6 1932 146 7 10 chr11 3196919 3197227 -147586326 - AluJb SINE Alu -5 307 1 1232 204 9 0 chr11 3197291 3197507 -147586046 + MER58A DNA MER1_type 1 218 -6 2190 105 0 3 chr11 3197926 3198247 -147585306 + AluSx SINE Alu 1 320 0 214 290 97 21 chr11 3198377 3198470 -147585083 + MIR SINE MIR 30 129 -79 288 317 120 7 chr11 3198826 3198968 -147584585 - MIR3 SINE MIR -8 200 43 315 327 72 33 chr11 3199332 3199485 -147584068 - L1ME LINE L1 -634 5487 5329 181 337 87 11 chr11 3200239 3200331 -147583222 - L2 LINE L2 -38 3234 3136 416 309 79 26 chr11 3200503 3200768 -147582785 + L3 LINE CR1 894 1172 -405 440 219 57 32 chr11 3200778 3200901 -147582652 - L2 LINE L2 -7 3306 3181 230 196 39 0 chr11 3200901 3200952 -147582601 + L3 LINE CR1 1206 1258 -319 372 262 248 10 chr11 3201019 3201221 -147582332 - MIR SINE MIR -12 250 1 362 281 39 46 chr11 3201234 3201387 -147582166 + L3 LINE CR1 1312 1463 -114 1907 144 11 0 chr11 3201407 3201713 -147581840 + AluJo SINE Alu 3 311 0 667 166 28 108 chr11 3202766 3203049 -147580504 - MER31-int LTR ERV1 -3250 1686 1313 927 126 0 53 chr11 3203296 3203447 -147580106 + FLAM_C SINE Alu 1 143 0 2433 57 0 0 chr11 3203450 3203768 -147579785 + AluY SINE Alu 1 318 0 2135 128 10 0 chr11 3205602 3205899 -147577654 - AluJb SINE Alu -12 300 1 1041 184 0 0 chr11 3205918 3206086 -147577467 - AluJ SINE Alu -14 298 131 21 0 0 0 chr11 3206091 3206112 -147577441 + AT_rich Low_complexity Low_complexity 1 21 0 889 133 0 15 chr11 3206596 3206731 -147576822 + FLAM_C SINE Alu 1 133 0 517 244 16 0 chr11 3207187 3207310 -147576243 - L2 LINE L2 0 3313 3189 202 241 38 25 chr11 3207391 3207470 -147576083 + MIR SINE MIR 113 192 -70 2077 134 3 16 chr11 3207534 3207847 -147575706 + AluSx SINE Alu 1 309 -3 3270 194 37 80 chr11 3207856 3208754 -147574799 + L1ME1 LINE L1 5290 6148 -18 838 148 16 0 chr11 3208868 3208996 -147574557 - AluJ SINE Alu -182 130 1 2117 134 0 0 chr11 3209005 3209297 -147574256 - AluSx SINE Alu -20 292 1 256 333 34 8 chr11 3209327 3209444 -147574109 + L2 LINE L2 3151 3270 -2 722 246 81 21 chr11 3209606 3209842 -147573711 + MIR SINE MIR 3 252 -10 448 309 152 10 chr11 3209859 3210063 -147573490 + MIR SINE MIR 20 252 -10 4703 130 241 44 chr11 3210321 3210337 -147573216 - L1 LINE L1 -761 5385 5373 1702 180 0 44 chr11 3210337 3210654 -147572899 - AluJb SINE Alu -9 303 1 4703 130 241 44 chr11 3210654 3210885 -147572668 - L1 LINE L1 -773 5373 5189 198 0 0 0 chr11 3210885 3210907 -147572646 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4703 130 241 44 chr11 3210907 3210927 -147572626 - L1 LINE L1 -957 5189 5174 1898 124 0 0 chr11 3210927 3211177 -147572376 - AluSx SINE Alu -62 250 1 4703 130 241 44 chr11 3211177 3211801 -147571752 - L1 LINE L1 -972 5174 4674 1934 156 0 13 chr11 3211801 3212115 -147571438 + AluJb SINE Alu 1 310 -2 4703 130 241 44 chr11 3212115 3212409 -147571144 - L1 LINE L1 -1472 4674 3963 1022 261 81 32 chr11 3212417 3212789 -147570764 - MLT1G LTR MaLR -191 399 10 1864 146 14 4 chr11 3212800 3213114 -147570439 + AluSx SINE Alu 1 317 0 220 324 101 14 chr11 3213146 3213294 -147570259 + MIR SINE MIR 84 244 -18 240 300 0 22 chr11 3214002 3214092 -147569461 - L3 LINE CR1 -90 1487 1400 513 335 133 6 chr11 3214219 3214535 -147569018 - L3 LINE CR1 -343 1234 879 432 170 38 28 chr11 3216130 3216236 -147567317 - MIR SINE MIR -10 252 146 1258 296 38 81 chr11 3216239 3216953 -147566600 - MER21B LTR ERV1 -176 687 5 2346 93 0 16 chr11 3217054 3217365 -147566188 - AluSc SINE Alu -1 308 3 652 193 51 57 chr11 3267835 3267877 -147515676 - MER5B DNA MER1_type -2 176 135 1864 152 10 10 chr11 3267877 3268055 -147515498 - AluJb SINE Alu -9 303 123 261 0 0 0 chr11 3268055 3268084 -147515469 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1864 152 10 10 chr11 3268084 3268208 -147515345 - AluJb SINE Alu -188 124 1 652 193 51 57 chr11 3268208 3268341 -147515212 - MER5B DNA MER1_type -43 135 2 2332 98 0 13 chr11 3268550 3268857 -147514696 - AluSx SINE Alu -9 303 1 748 50 0 20 chr11 3268857 3268957 -147514596 - AluY SINE Alu -35 276 179 349 263 46 46 chr11 3269115 3269160 -147514393 + MLT1K LTR MaLR 384 428 -160 1978 155 0 13 chr11 3269160 3269464 -147514089 + AluJb SINE Alu 1 300 -12 349 263 46 46 chr11 3269464 3269593 -147513960 + MLT1K LTR MaLR 427 558 -30 35 0 0 22 chr11 3269738 3269755 -147513798 + AT_rich Low_complexity Low_complexity 1 17 -28 2395 89 0 0 chr11 3269755 3270047 -147513506 + AluSx SINE Alu 1 292 -20 35 0 0 22 chr11 3270047 3270075 -147513478 + AT_rich Low_complexity Low_complexity 17 45 0 23 33 0 0 chr11 3270456 3270486 -147513067 + AT_rich Low_complexity Low_complexity 1 30 0 1221 189 62 72 chr11 3270673 3270785 -147512768 + Tigger3(Golem) DNA MER2_type 2530 2642 -387 2267 102 14 0 chr11 3270785 3271080 -147512473 - AluSq SINE Alu -14 299 1 1221 189 62 72 chr11 3271080 3271189 -147512364 + Tigger3(Golem) DNA MER2_type 2642 2751 -278 2098 135 0 25 chr11 3271189 3271507 -147512046 - AluSx SINE Alu -2 310 1 1221 189 62 72 chr11 3271507 3271685 -147511868 + Tigger3(Golem) DNA MER2_type 2751 2926 -103 1865 99 56 49 chr11 3272443 3272747 -147510806 + AluSx SINE Alu 1 306 -6 667 280 59 57 chr11 3272867 3273239 -147510314 + L2 LINE L2 2941 3313 0 186 364 34 23 chr11 3273310 3273398 -147510155 + L2 LINE L2 3136 3224 -48 207 146 0 0 chr11 3273445 3273486 -147510067 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 2123 110 0 0 chr11 3273633 3273906 -147509647 + AluSx SINE Alu 24 296 -16 282 246 0 0 chr11 3274085 3274142 -147509411 - MER8 DNA MER2_type -2 237 181 2859 117 27 27 chr11 3274157 3274603 -147508950 + Tigger2 DNA MER2_type 2273 2718 0 727 359 23 11 chr11 3274893 3275155 -147508398 + MLT1K LTR MaLR 17 281 -307 180 152 0 0 chr11 3275206 3275239 -147508314 + (TAA)n Simple_repeat Simple_repeat 3 35 0 872 253 21 17 chr11 3275241 3275482 -147508071 - MIR SINE MIR 0 262 21 441 0 0 0 chr11 3275487 3275536 -147508017 + (TG)n Simple_repeat Simple_repeat 2 50 0 2422 113 30 0 chr11 3276842 3277205 -147506348 + THE1C LTR MaLR 2 375 0 22 35 0 0 chr11 3277226 3277255 -147506298 + AT_rich Low_complexity Low_complexity 1 29 0 181 333 49 12 chr11 3277271 3277352 -147506201 + MIR SINE MIR 60 143 -119 2036 143 14 0 chr11 3277526 3277812 -147505741 - AluSx SINE Alu -22 290 1 192 40 0 0 chr11 3278138 3278163 -147505390 + (TA)n Simple_repeat Simple_repeat 1 25 0 298 253 88 60 chr11 3278172 3278354 -147505199 + L1ME4a LINE L1 5917 6103 -18 8558 47 9 0 chr11 3278862 3280690 -147502863 + L1PA5 LINE L1 4300 6154 0 814 171 8 0 chr11 3280731 3280854 -147502699 - FLAM_C SINE Alu -19 124 1 1186 118 49 25 chr11 3280873 3281077 -147502476 + MER3 DNA MER1_type 1 209 0 1521 150 0 0 chr11 3281338 3281551 -147502002 + MER1B DNA MER1_type 1 213 -84 315 209 60 0 chr11 3281655 3281722 -147501831 + MER5B DNA MER1_type 108 178 0 1621 172 0 40 chr11 3281756 3282053 -147501500 - MLT1D LTR MaLR 0 505 221 274 167 91 91 chr11 3282050 3282116 -147501437 - MLT1D LTR MaLR -439 66 1 * 563 287 35 0 chr11 3282536 3282738 -147500815 - LTR33 LTR ERVL -7 514 306 458 281 97 42 chr11 3282786 3283003 -147500550 - LTR33 LTR ERVL -292 229 1 1166 162 15 0 chr11 3283032 3283230 -147500323 + L1MB1 LINE L1 5596 5796 -372 3570 111 4 132 chr11 3283230 3283771 -147499782 + MER4D LTR ERV1 1 427 -445 7775 28 17 0 chr11 3283771 3284763 -147498790 - L1PA3 LINE L1 0 6155 5160 3570 111 4 132 chr11 3284763 3284951 -147498602 + MER4D LTR ERV1 427 637 -235 658 175 0 0 chr11 3285102 3285216 -147498337 + AluSg/x SINE Alu 199 312 0 2013 131 37 6 chr11 3285216 3285544 -147498009 + L1MB1 LINE L1 5803 6140 -28 2261 85 0 7 chr11 3285544 3285827 -147497726 - AluSc SINE Alu -15 294 14 348 176 0 44 chr11 3287016 3287084 -147496469 - MER4D LTR ERV1 -455 417 353 4408 156 47 56 chr11 3287140 3288482 -147495071 + L1MB7 LINE L1 4860 6184 0 294 295 67 40 chr11 3288536 3288760 -147494793 - L2 LINE L2 -945 2369 2140 1019 59 7 13 chr11 3290251 3290403 -147493150 + SVA Other Other 716 866 -520 6611 73 37 43 chr11 3290420 3291594 -147491959 + SVA Other Other 432 1383 -3 198 0 0 0 chr11 3291608 3291630 -147491923 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 622 158 103 91 chr11 3291630 3291839 -147491714 + AluSg/x SINE Alu 121 331 0 1964 151 7 0 chr11 3291846 3292130 -147491423 + AluSx SINE Alu 1 286 -26 197 143 29 0 chr11 3292469 3292504 -147491049 + L2 LINE L2 3262 3297 -16 510 230 46 75 chr11 3294034 3294094 -147489459 - MER5B DNA MER1_type -8 170 110 2193 89 52 0 chr11 3294094 3294385 -147489168 + AluSx SINE Alu 1 306 -6 510 230 46 75 chr11 3294385 3294498 -147489055 - MER5B DNA MER1_type -68 110 2 1236 208 0 21 chr11 3295172 3295412 -147488141 - AluJo SINE Alu -77 235 1 247 309 15 0 chr11 3296035 3296103 -147487450 + L2 LINE L2 3231 3299 -14 619 239 46 10 chr11 3296172 3296369 -147487184 + L1MEc LINE L1 1972 2175 -4221 195 42 0 0 chr11 3296549 3296573 -147486980 + (CA)n Simple_repeat Simple_repeat 1 24 0 2436 89 0 19 chr11 3296895 3297208 -147486345 + AluSx SINE Alu 1 307 -5 252 267 9 57 chr11 3297607 3297712 -147485841 + MIR SINE MIR 58 157 -105 876 206 85 45 chr11 3297721 3297849 -147485704 - MER2 DNA MER2_type -4 341 220 2532 57 0 0 chr11 3297849 3298146 -147485407 + AluY SINE Alu 1 297 -14 876 206 85 45 chr11 3298146 3298264 -147485289 - MER2 DNA MER2_type -125 220 85 4282 124 53 49 chr11 3298269 3298929 -147484624 - L1MA5A LINE L1 -4 6293 5628 1963 156 0 16 chr11 3298929 3299243 -147484310 - AluJo SINE Alu -3 309 1 4282 124 53 49 chr11 3299243 3299375 -147484178 - L1MA5A LINE L1 -669 5628 5498 2285 106 6 6 chr11 3301038 3301350 -147482203 + AluSx SINE Alu 1 312 0 16668 177 66 37 chr11 3301402 3303565 -147479988 - ERVL LTR ERVL -1994 3770 1472 2311 115 0 0 chr11 3303565 3303861 -147479692 - AluSx SINE Alu -16 296 1 16668 177 66 37 chr11 3303861 3305063 -147478490 - ERVL LTR ERVL -4292 1472 307 282 270 56 0 chr11 3305092 3305181 -147478372 + L1M4 LINE L1 842 935 -5607 1756 191 3 3 chr11 3305183 3305492 -147478061 + AluSx SINE Alu 1 309 -3 1735 199 57 14 chr11 3305493 3305981 -147477572 + L1M4 LINE L1 1094 1602 -4940 2091 109 0 4 chr11 3306083 3306358 -147477195 - AluSx SINE Alu -38 274 1 253 217 0 0 chr11 3306494 3306540 -147477013 - L2 LINE L2 -15 3257 3212 208 274 158 18 chr11 3307511 3307675 -147475878 + L2 LINE L2 3127 3313 0 526 267 11 59 chr11 3307738 3307894 -147475659 - MIR SINE MIR -80 182 35 1574 170 60 3 chr11 3307894 3308177 -147475376 - AluJo SINE Alu -13 299 1 526 267 11 59 chr11 3308177 3308207 -147475346 - MIR SINE MIR -227 35 5 1059 235 71 18 chr11 3308507 3308847 -147474706 + L2 LINE L2 2944 3301 -12 199 318 63 0 chr11 3309148 3309211 -147474342 - MIR SINE MIR -46 216 150 * 297 232 134 36 chr11 3309208 3309320 -147474233 + L2 LINE L2 3191 3313 0 295 266 128 9 chr11 3309320 3309429 -147474124 - MIR SINE MIR -66 142 21 340 222 136 25 chr11 3309861 3310023 -147473530 + Charlie7 DNA MER1_type 2427 2606 -6 2441 84 3 0 chr11 3310024 3310320 -147473233 + AluSc SINE Alu 1 297 -12 872 203 122 10 chr11 3311119 3311316 -147472237 + MER20 DNA MER1_type 1 219 0 1667 187 3 10 chr11 3311743 3312037 -147471516 - AluJb SINE Alu -16 296 5 2314 87 0 13 chr11 3312049 3312349 -147471204 - AluSx SINE Alu -6 306 11 1209 94 12 0 chr11 3312349 3312509 -147471044 - AluSg/x SINE Alu -5 307 146 1914 163 3 13 chr11 3312929 3313242 -147470311 - AluJo SINE Alu -2 310 1 593 194 0 0 chr11 3313489 3313597 -147469956 + FLAM_C SINE Alu 3 110 -33 2680 126 12 7 chr11 3313697 3314103 -147469450 - L1PA15 LINE L1 -267 5898 5488 1669 144 88 11 chr11 3314103 3314388 -147469165 - AluJo SINE Alu -5 307 1 331 335 33 42 chr11 3314503 3314718 -147468835 - L1M4 LINE L1 -2574 3572 3360 345 340 205 0 chr11 3315717 3315932 -147467621 - L2 LINE L2 0 3272 3014 331 257 108 12 chr11 3316980 3317129 -147466424 - MIR3 SINE MIR -63 145 3 796 231 74 10 chr11 3317872 3318075 -147465478 - MLT1C LTR MaLR 0 467 252 611 263 58 26 chr11 3318103 3318293 -147465260 - MLT1C LTR MaLR -309 196 1 183 287 69 30 chr11 3319337 3319438 -147464115 + L2 LINE L2 2949 3053 -219 28 0 0 0 chr11 3319920 3319948 -147463605 + AT_rich Low_complexity Low_complexity 1 28 0 2120 132 0 0 chr11 3319951 3320239 -147463314 + AluSx SINE Alu 1 288 -24 1289 131 62 4 chr11 3320242 3320486 -147463067 - L1MA4A LINE L1 -3 6300 6043 189 254 79 0 chr11 3321784 3321847 -147461706 - MIR3 SINE MIR -31 177 110 533 224 209 25 chr11 3322001 3322197 -147461356 + MIR SINE MIR 27 258 -4 402 257 58 134 chr11 3322216 3322477 -147461076 - L2 LINE L2 -2 3270 3030 358 322 115 0 chr11 3322498 3322681 -147460872 - MIR SINE MIR -39 223 20 624 208 76 0 chr11 3322829 3322973 -147460580 + MIR SINE MIR 2 156 -106 183 299 91 0 chr11 3322968 3323045 -147460508 - MIR SINE MIR -1 261 178 * 548 202 171 0 chr11 3323048 3323177 -147460376 + MIR SINE MIR 112 262 0 414 206 97 45 chr11 3323429 3323584 -147459969 + MER103 DNA DNA 2 164 -2 836 143 8 15 chr11 3323641 3323774 -147459779 + FLAM_C SINE Alu 2 133 -10 480 247 95 47 chr11 3323801 3323991 -147459562 + MIR SINE MIR 63 261 -1 200 277 92 0 chr11 3323979 3324044 -147459509 - MIR SINE MIR -66 196 126 * 189 74 0 0 chr11 3324460 3324487 -147459066 + (CGG)n Simple_repeat Simple_repeat 3 29 0 885 119 24 54 chr11 3325533 3325701 -147457852 - MLT1A2 LTR MaLR -208 166 4 252 301 75 11 chr11 3326734 3326827 -147456726 + MIR3 SINE MIR 12 110 -98 1114 222 15 11 chr11 3329299 3329569 -147453984 - L1ME1 LINE L1 -5 6161 5891 726 230 125 30 chr11 3330036 3330264 -147453289 - MIR SINE MIR -2 260 16 539 231 66 16 chr11 3330571 3330692 -147452861 - L2 LINE L2 0 3272 3146 513 264 129 11 chr11 3330945 3331123 -147452430 - MIR SINE MIR -51 211 13 289 347 50 8 chr11 3331182 3331303 -147452250 - L2 LINE L2 -5 3267 3142 752 247 36 46 chr11 3331661 3331763 -147451790 + MIR SINE MIR 40 141 -121 2508 56 0 0 chr11 3331763 3332065 -147451488 + AluY SINE Alu 1 302 -9 752 247 36 46 chr11 3332065 3332181 -147451372 + MIR SINE MIR 141 256 -6 322 294 52 59 chr11 3332341 3332477 -147451076 - MIR3 SINE MIR -40 168 34 268 413 0 14 chr11 3333903 3334041 -147449512 - L2 LINE L2 -218 3054 2919 205 182 23 0 chr11 3334837 3334881 -147448672 - L2 LINE L2 -1 3271 3227 235 303 61 0 chr11 3335043 3335109 -147448444 - L2 LINE L2 -215 3057 2988 3626 173 25 23 chr11 3335618 3336345 -147447208 + L1MB5 LINE L1 5447 6174 0 2292 164 92 31 chr11 3336345 3336515 -147447038 + L1MB7 LINE L1 5110 5268 -916 1987 137 0 7 chr11 3336515 3336821 -147446732 + AluSx SINE Alu 2 305 -7 2292 164 92 31 chr11 3336821 3337470 -147446083 + L1MB7 LINE L1 5268 6167 -17 907 139 7 13 chr11 3337480 3337631 -147445922 + Tigger1 DNA MER2_type 1 150 -2268 1340 124 14 5 chr11 3337634 3337843 -147445710 + Tigger1 DNA MER2_type 2208 2418 0 351 234 175 0 chr11 3337917 3338054 -147445499 + MIR3 SINE MIR 41 201 -7 207 285 118 4 chr11 3338148 3338262 -147445291 + MIR SINE MIR 65 192 -16 327 243 0 0 chr11 3339159 3339229 -147444324 + MIR SINE MIR 61 130 -132 320 303 34 25 chr11 3340609 3340728 -147442825 - L2 LINE L2 -20 3252 3133 825 145 23 8 chr11 3340742 3340873 -147442680 + FLAM_C SINE Alu 1 133 0 181 384 36 27 chr11 3341168 3341280 -147442273 + L2 LINE L2 2224 2336 -978 328 270 120 0 chr11 3341352 3341452 -147442101 - MIR SINE MIR -65 143 32 355 271 47 0 chr11 3341806 3341913 -147441640 + MIR SINE MIR 95 206 -56 484 316 199 3 chr11 3342108 3342390 -147441163 + L3 LINE CR1 342 678 -899 391 275 14 84 chr11 3344817 3344959 -147438594 + MIR3 SINE MIR 72 203 -5 187 303 0 30 chr11 3345439 3345505 -147438048 - L2 LINE L2 -665 2649 2586 180 0 0 0 chr11 3345524 3345544 -147438009 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1528 147 45 4 chr11 3345552 3345817 -147437736 - AluJo SINE Alu -36 276 1 307 270 141 38 chr11 3345872 3346057 -147437496 - MIR SINE MIR -25 237 34 198 0 0 0 chr11 3347226 3347248 -147436305 + (T)n Simple_repeat Simple_repeat 1 22 0 411 244 122 28 chr11 3347609 3347789 -147435764 + L2 LINE L2 3117 3313 0 2248 108 0 9 chr11 3349034 3349350 -147434203 + AluSq SINE Alu 1 313 0 2877 216 105 29 chr11 3349424 3350382 -147433171 - L1ME3 LINE L1 -2 6955 5894 1881 157 0 3 chr11 3350382 3350695 -147432858 + AluSx SINE Alu 1 312 0 2877 216 105 29 chr11 3350695 3350846 -147432707 - L1ME3 LINE L1 -1063 5894 5756 632 270 19 5 chr11 3350907 3351118 -147432435 - L1ME3 LINE L1 -3195 3746 3533 621 248 63 46 chr11 3351129 3351769 -147431784 + L1MEc LINE L1 2160 2694 -3452 * 821 260 99 40 chr11 3351763 3352296 -147431257 - L1ME3 LINE L1 -4887 1536 1279 1867 151 3 0 chr11 3352853 3353151 -147430402 - AluJo SINE Alu -13 299 1 417 310 89 47 chr11 3353874 3354087 -147429466 - L3 LINE CR1 0 1577 1356 332 263 58 12 chr11 3354075 3354190 -147429363 - MIR3 SINE MIR -111 97 1 * 226 296 102 0 chr11 3354353 3354451 -147429102 + MIR SINE MIR 57 164 -98 202 291 0 35 chr11 3354746 3354832 -147428721 + CT-rich Low_complexity Low_complexity 1 83 0 252 278 10 41 chr11 3355055 3355152 -147428401 + CT-rich Low_complexity Low_complexity 5 98 0 200 284 0 40 chr11 3357484 3357558 -147425995 + CT-rich Low_complexity Low_complexity 2 72 0 258 304 189 20 chr11 3358043 3358244 -147425309 - MIR SINE MIR -23 239 5 304 318 93 9 chr11 3358409 3358516 -147425037 - L1ME LINE L1 -370 5751 5636 333 100 0 0 chr11 3359074 3359124 -147424429 + (CCA)n Simple_repeat Simple_repeat 2 51 0 503 308 175 45 chr11 3359546 3360133 -147423420 - L2 LINE L2 -1 3271 2585 210 267 17 0 chr11 3360172 3360232 -147423321 - L2 LINE L2 -829 2485 2425 321 321 46 0 chr11 3360310 3360441 -147423112 - MIR SINE MIR -65 143 30 1695 134 52 14 chr11 3361334 3361625 -147421928 + AluJb SINE Alu 1 302 -10 303 296 91 61 chr11 3362573 3362705 -147420848 - MIR SINE MIR -46 216 81 244 313 6 47 chr11 3363279 3363613 -147419940 + CT-rich Low_complexity Low_complexity 1 320 0 483 173 67 0 chr11 3365713 3365817 -147417736 - MER53 DNA DNA 0 189 79 2052 116 0 0 chr11 3365907 3366209 -147417344 - AluSg SINE Alu -2 308 7 698 155 9 0 chr11 3366213 3366329 -147417224 - AluJo SINE Alu -175 137 21 214 205 179 0 chr11 3367696 3367774 -147415779 - MIR SINE MIR -51 211 120 189 262 143 12 chr11 3368101 3368185 -147415368 - L2 LINE L2 -9 3263 3169 1467 181 0 11 chr11 3368395 3368666 -147414887 - AluJo SINE Alu -24 288 21 22 56 0 0 chr11 3368994 3369030 -147414523 + AT_rich Low_complexity Low_complexity 1 36 0 822 106 8 15 chr11 3369030 3369162 -147414391 - FLAM_C SINE Alu -12 131 1 2040 117 23 3 chr11 3369359 3369658 -147413895 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr11 3369815 3369864 -147413689 + AT_rich Low_complexity Low_complexity 1 49 0 1104 157 0 5 chr11 3369947 3370132 -147413421 - AluSg/x SINE Alu -12 300 117 840 181 0 0 chr11 3370625 3370796 -147412757 + CT-rich Low_complexity Low_complexity 4 174 0 277 345 48 21 chr11 3370828 3370973 -147412580 - L2 LINE L2 -34 3279 3131 824 277 59 57 chr11 3370998 3371370 -147412183 - L2 LINE L2 0 3313 2941 1843 104 49 46 chr11 3371490 3371797 -147411756 - AluSx SINE Alu -4 308 1 202 280 133 0 chr11 3372567 3372642 -147410911 - L2 LINE L2 0 3272 3188 1553 140 0 4 chr11 3372690 3372926 -147410627 - MER46A DNA MER2_type 0 236 2 216 250 0 0 chr11 3372982 3373022 -147410531 - MIR SINE MIR -7 255 216 361 257 12 70 chr11 3373390 3373561 -147409992 - L2 LINE L2 -151 3162 3002 380 299 39 74 chr11 3373563 3373670 -147409883 - L2 LINE L2 -415 2899 2790 2132 110 0 42 chr11 3373670 3373980 -147409573 - AluSq SINE Alu -16 297 1 380 299 39 74 chr11 3373980 3374103 -147409450 - L2 LINE L2 -524 2790 2677 2447 55 20 0 chr11 3374731 3375023 -147408530 + AluSx SINE Alu 1 298 -14 375 276 178 18 chr11 3375684 3375847 -147407706 - MIR3 SINE MIR -6 202 14 685 135 31 0 chr11 3375924 3376020 -147407533 + AluJb SINE Alu 10 108 -204 1402 128 52 52 chr11 3376021 3376271 -147407282 - AluSx SINE Alu -51 261 12 984 178 35 41 chr11 3376286 3376483 -147407070 + AluJb SINE Alu 106 301 -11 330 214 101 11 chr11 3376953 3377042 -147406511 + MIR SINE MIR 84 180 -82 1562 191 0 20 chr11 3377589 3377887 -147405666 - AluJo SINE Alu -20 292 1 1504 142 108 54 chr11 3377925 3378221 -147405332 - AluJo SINE Alu 0 312 1 436 265 12 0 chr11 3378236 3378319 -147405234 - FLAM_A SINE Alu -58 84 1 773 170 7 50 chr11 3378674 3378815 -147404738 + AluJb SINE Alu 2 136 -176 825 114 44 38 chr11 3378932 3379090 -147404463 - AluY SINE Alu -152 159 1 192 160 40 80 chr11 3379168 3379218 -147404335 - L2 LINE L2 -4 3309 3262 557 295 67 51 chr11 3379566 3380051 -147403502 - L1MC4a LINE L1 -462 5704 5532 2494 72 0 0 chr11 3380215 3380520 -147403033 + AluY SINE Alu 1 305 -6 28 29 0 0 chr11 3381103 3381138 -147402415 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr11 3381490 3381519 -147402034 + AT_rich Low_complexity Low_complexity 1 29 0 415 269 169 8 chr11 3381895 3382025 -147401528 + MIR SINE MIR 1 151 -111 540 157 0 0 chr11 3382059 3382148 -147401405 - AluSg/x SINE Alu -20 290 202 441 56 0 0 chr11 3382202 3382256 -147401297 + Alu SINE Alu 246 299 -10 224 229 84 36 chr11 3382270 3382353 -147401200 - MIR SINE MIR -36 226 140 213 308 0 39 chr11 3382347 3382451 -147401102 + MIR SINE MIR 162 261 -1 * 529 157 0 12 chr11 3382556 3382639 -147400914 + FLAM SINE Alu 42 123 -20 1675 79 0 19 chr11 3382678 3382894 -147400659 + AluY SINE Alu 85 296 -15 586 135 32 128 chr11 3383711 3383832 -147399721 + L1MB8 LINE L1 6044 6148 -36 1998 128 7 10 chr11 3383832 3384128 -147399425 - AluSx SINE Alu -15 297 3 586 135 32 128 chr11 3384128 3384162 -147399391 + L1MB8 LINE L1 6148 6184 0 233 413 9 0 chr11 3384163 3384272 -147399281 - L2 LINE L2 -661 2653 2544 798 250 0 6 chr11 3384287 3384443 -147399110 + FRAM SINE Alu 1 155 -21 270 271 28 28 chr11 3384575 3384682 -147398871 + L1ME4a LINE L1 3765 3871 -2275 535 298 88 0 chr11 3384798 3385013 -147398540 + L1ME4a LINE L1 4111 4344 -1802 2242 148 29 18 chr11 3385038 3385312 -147398241 - Tigger3(Golem) DNA MER2_type 0 3028 2747 2187 116 0 25 chr11 3385312 3385630 -147397923 + AluSx SINE Alu 1 310 -2 2242 148 29 18 chr11 3385630 3385739 -147397814 - Tigger3(Golem) DNA MER2_type -281 2747 2641 646 231 15 0 chr11 3385740 3385870 -147397683 + FLAM_A SINE Alu 1 132 -1 416 105 35 0 chr11 3385870 3385927 -147397626 + AluSq SINE Alu 134 192 -121 1872 153 0 7 chr11 3386283 3386570 -147396983 - AluSx SINE Alu -25 287 3 317 231 240 8 chr11 3386593 3386714 -147396839 + L1ME4a LINE L1 4461 4609 -1537 917 227 135 40 chr11 3386734 3387064 -147396489 + MLT1D LTR MaLR 1 363 -142 2293 92 0 0 chr11 3387124 3387416 -147396137 - AluSq SINE Alu -21 292 1 1882 129 4 11 chr11 3387903 3388182 -147395371 + AluSx SINE Alu 35 311 -1 1072 285 111 14 chr11 3388234 3388247 -147395306 + L1ME4a LINE L1 5291 5301 -820 1813 175 13 0 chr11 3388247 3388555 -147394998 + AluJo SINE Alu 1 312 0 1072 285 111 14 chr11 3388555 3389173 -147394380 + L1ME4a LINE L1 5301 5999 -122 193 311 39 19 chr11 3389321 3389424 -147394129 - L2 LINE L2 -1680 1634 1530 415 318 81 29 chr11 3390084 3390257 -147393296 + MIR3 SINE MIR 20 201 -7 389 230 50 0 chr11 3390288 3390388 -147393165 - MIR SINE MIR -12 250 146 425 273 62 8 chr11 3390405 3390533 -147393020 - MIR SINE MIR -74 188 54 321 296 35 52 chr11 3390592 3390707 -147392846 + MIR SINE MIR 34 146 -62 745 163 25 156 chr11 3391613 3391889 -147391664 - L1ME2 LINE L1 -11 6155 5916 1636 177 27 10 chr11 3391926 3392225 -147391328 - AluJo SINE Alu -8 304 1 1564 186 0 43 chr11 3392283 3392606 -147390947 + AluJb SINE Alu 1 309 -3 2305 125 0 0 chr11 3394150 3394454 -147389099 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr11 3394707 3394729 -147388824 + AT_rich Low_complexity Low_complexity 1 22 0 699 168 0 0 chr11 3395283 3395396 -147388157 + AluJb SINE Alu 199 311 -1 334 300 0 0 chr11 3396159 3396249 -147387304 + L2 LINE L2 2679 2768 -546 231 189 189 68 chr11 3396250 3396324 -147387229 - AluJb SINE Alu -7 295 213 1551 119 33 116 chr11 3396351 3396466 -147387087 - L1MB7 LINE L1 -42 6142 6019 2509 76 0 0 chr11 3396466 3396769 -147386784 - AluSc SINE Alu -4 305 3 1551 119 33 116 chr11 3396769 3397014 -147386539 - L1MB7 LINE L1 -165 6019 5812 773 270 54 32 chr11 3397014 3397376 -147386177 + L2 LINE L2 2776 3138 -175 220 328 121 17 chr11 3397547 3397663 -147385890 - L2 LINE L2 -4 3268 3141 546 117 182 2 chr11 3397766 3397904 -147385649 + MER3 DNA MER1_type 15 208 -1 25 0 0 0 chr11 3398127 3398152 -147385401 + AT_rich Low_complexity Low_complexity 1 25 0 1185 240 100 43 chr11 3398859 3399300 -147384253 + MLT1C LTR MaLR 1 466 -1 769 216 115 16 chr11 3399402 3399705 -147383848 - MLT1E1 LTR MaLR -44 610 210 818 156 8 8 chr11 3399725 3399853 -147383700 - AluSx SINE Alu -12 300 173 921 124 0 0 chr11 3399853 3399974 -147383579 - AluSx SINE Alu -191 122 2 971 190 82 0 chr11 3399975 3400170 -147383383 - MLT1E1 LTR MaLR -437 217 7 188 271 50 86 chr11 3400810 3400950 -147382603 + MIR SINE MIR 128 262 0 313 253 88 60 chr11 3401435 3401617 -147381936 - L1ME4a LINE L1 -18 6103 5917 192 40 0 0 chr11 3401625 3401650 -147381903 + (TA)n Simple_repeat Simple_repeat 1 25 0 2023 143 14 0 chr11 3401977 3402263 -147381290 + AluSx SINE Alu 1 290 -22 206 338 62 12 chr11 3402437 3402517 -147381036 - MIR SINE MIR -119 143 60 22 35 0 0 chr11 3402533 3402562 -147380991 + AT_rich Low_complexity Low_complexity 1 29 0 2396 129 30 3 chr11 3402583 3402947 -147380606 - THE1C LTR MaLR 0 375 2 185 195 0 24 chr11 3403642 3403683 -147379870 + L2 LINE L2 3274 3313 0 306 230 0 48 chr11 3403826 3403940 -147379613 + MER5B DNA MER1_type 1 174 -4 514 178 9 19 chr11 3404112 3404219 -147379334 - L1MA9 LINE L1 0 6312 6207 1112 113 0 19 chr11 3404245 3404404 -147379149 - AluSg/x SINE Alu -25 287 132 563 253 29 58 chr11 3404923 3405036 -147378517 + MER5B DNA MER1_type 2 110 -68 2171 89 52 0 chr11 3405036 3405327 -147378226 - AluSx SINE Alu -6 306 1 563 253 29 58 chr11 3405327 3405387 -147378166 + MER5B DNA MER1_type 110 170 -8 191 305 34 0 chr11 3406744 3406803 -147376750 + L2 LINE L2 2718 2778 -536 241 283 181 65 chr11 3406916 3407054 -147376499 - L2 LINE L2 -16 3256 3103 1945 151 7 0 chr11 3407290 3407574 -147375979 - AluSx SINE Alu -26 286 1 986 59 7 13 chr11 3407683 3407835 -147375718 - SVA Other Other -520 866 716 3299 154 75 6 chr11 3408714 3409059 -147374494 - L1MB4 LINE L1 -8 6172 5852 1703 151 37 40 chr11 3409059 3409358 -147374195 - AluSx SINE Alu -12 300 3 3299 154 75 6 chr11 3409358 3409655 -147373898 - L1MB4 LINE L1 -328 5852 5486 814 166 36 67 chr11 3409660 3409853 -147373700 - AluJo SINE Alu -9 303 117 2695 191 66 40 chr11 3409872 3410643 -147372910 - L1M4c LINE L1 -4839 1703 929 1706 186 3 3 chr11 3410643 3410938 -147372615 - AluSx SINE Alu -17 295 1 2695 191 66 40 chr11 3410938 3411029 -147372524 - L1M4c LINE L1 -5613 929 842 388 218 0 0 chr11 3411058 3411136 -147372417 + ERVL LTR ERVL 307 384 -5380 3470 149 21 21 chr11 3411237 3411888 -147371665 - L1MA4A LINE L1 -348 7017 6367 * 43970 32 21 2 chr11 3411882 3417906 -147365647 - L1PA3 LINE L1 -10 6145 2 4300 196 16 22 chr11 3417907 3418688 -147364865 - L1MA4A LINE L1 -815 6393 5618 2246 104 13 13 chr11 3418688 3418997 -147364556 - AluSx SINE Alu -3 309 1 4300 196 16 22 chr11 3418997 3419158 -147364395 - L1MA4A LINE L1 -1590 5618 5457 402 173 0 0 chr11 3419167 3419242 -147364311 - L1MA5A LINE L1 0 6297 6223 4684 196 24 8 chr11 3419247 3419788 -147363765 - L1MA4A LINE L1 -3024 4184 3618 1548 118 50 5 chr11 3419788 3420008 -147363545 + MER30 DNA MER1_type 1 230 0 4684 196 24 8 chr11 3420008 3420483 -147363070 - L1MA4A LINE L1 -3590 3618 3152 1948 211 95 24 chr11 3420480 3421176 -147362377 - L1MA4A LINE L1 -5737 1472 741 * 188 311 242 0 chr11 3421428 3421560 -147361993 + MIR3 SINE MIR 16 179 -29 309 269 190 5 chr11 3421616 3421774 -147361779 - MIR SINE MIR -50 212 34 1896 156 73 43 chr11 3422035 3422406 -147361147 + MSTD LTR MaLR 6 387 -9 513 275 53 5 chr11 3422919 3423108 -147360445 - MIR SINE MIR -12 250 53 295 258 126 4 chr11 3424082 3424212 -147359341 + MIR SINE MIR 33 145 -63 220 178 44 0 chr11 3424223 3424268 -147359285 - L2 LINE L2 0 3313 3267 238 326 0 20 chr11 3424297 3424395 -147359158 + MIR SINE MIR 162 257 -5 * 542 263 134 18 chr11 3424327 3424544 -147359009 - MIR SINE MIR 0 262 21 234 0 0 0 chr11 3425084 3425110 -147358443 + (GGGAGA)n Simple_repeat Simple_repeat 6 31 0 1256 120 0 22 chr11 3425115 3425298 -147358255 - AluSg/x SINE Alu -12 300 122 226 275 0 33 chr11 3425430 3425521 -147358032 - MLT1H LTR MaLR -378 171 84 569 274 59 0 chr11 3425590 3425743 -147357810 + L1MC/D LINE L1 5453 5614 -2194 988 180 5 37 chr11 3425754 3425943 -147357610 - AluJo SINE Alu -129 183 1 1146 239 53 67 chr11 3425999 3426723 -147356830 + L1MC3 LINE L1 1421 7459 -720 264 273 10 30 chr11 3426729 3426828 -147356725 + MLT1F1 LTR MaLR 15 111 -456 227 214 36 0 chr11 3426830 3426886 -147356667 + L1MC3 LINE L1 7571 7628 -551 338 293 70 37 chr11 3427079 3427352 -147356201 + MER65A LTR ERV1 161 442 -3 29 0 0 0 chr11 3427916 3427945 -147355608 + AT_rich Low_complexity Low_complexity 1 29 0 341 303 26 62 chr11 3427996 3428191 -147355362 + MIR SINE MIR 68 255 -7 631 260 99 55 chr11 3429332 3429748 -147353805 + MER20B DNA MER1_type 184 617 -166 694 99 0 0 chr11 3429983 3430084 -147353469 + MER6 DNA MER2_type 576 676 -189 4611 163 77 7 chr11 3430197 3430220 -147353333 + MER6 DNA MER2_type 1 21 -844 1860 170 0 10 chr11 3430220 3430526 -147353027 - AluJb SINE Alu -9 303 1 4611 163 77 7 chr11 3430526 3431311 -147352242 + MER6 DNA MER2_type 21 865 0 544 225 131 25 chr11 3431341 3431501 -147352052 + MER5A DNA MER1_type 7 183 -6 193 283 0 0 chr11 3431517 3431563 -147351990 + MER5B DNA MER1_type 7 52 -126 402 286 0 36 chr11 3432431 3432543 -147351010 + MER5B DNA MER1_type 1 108 -70 303 296 64 55 chr11 3433256 3433476 -147350077 - HAL1b LINE L1 -825 523 302 742 215 99 40 chr11 3433499 3433722 -147349831 - MER106A DNA MER1_type 0 236 1 2564 191 52 93 chr11 3434187 3434943 -147348610 + MER50 LTR ERV1 10 734 0 1253 218 41 36 chr11 3435240 3435602 -147347951 - L1ME LINE L1 -505 5659 5296 354 319 85 14 chr11 3435710 3435851 -147347702 + L2 LINE L2 3111 3261 -11 1391 180 48 0 chr11 3436121 3436371 -147347182 - AluJo SINE Alu -14 298 37 271 306 51 0 chr11 3436510 3436608 -147346945 - L2 LINE L2 -632 2682 2580 3141 87 27 22 chr11 3436926 3437372 -147346181 + LTR7 LTR ERV1 1 448 -2 9268 184 64 51 chr11 3437375 3441279 -147342274 + HERVH LTR ERV1 1 3993 -3720 3113 124 0 2 chr11 3441282 3441896 -147341657 + HERVH LTR ERV1 4489 5149 -2564 1415 99 20 0 chr11 3441931 3442132 -147341421 + HERVH LTR ERV1 5615 5819 -1894 2334 95 68 14 chr11 3442132 3442502 -147341051 + HERVH LTR ERV1 7324 7713 0 3098 90 29 22 chr11 3442502 3442947 -147340606 + LTR7 LTR ERV1 1 448 -2 2137 82 7 0 chr11 3443737 3444007 -147339546 - L1PA6 LINE L1 -4 6150 5879 189 368 9 19 chr11 3444661 3444767 -147338786 - L2 LINE L2 -1024 2290 2186 2345 83 0 0 chr11 3445577 3445866 -147337687 + AluSx SINE Alu 1 289 -23 408 321 108 51 chr11 3446240 3446573 -147336980 - L2 LINE L2 -5 3267 2916 325 358 142 11 chr11 3446612 3446886 -147336667 - L2 LINE L2 -452 2862 2553 405 0 0 0 chr11 3447415 3447460 -147336093 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 3449018 3449061 -147334492 + AT_rich Low_complexity Low_complexity 1 43 0 716 159 38 30 chr11 3449386 3449518 -147334035 + AluJb SINE Alu 2 134 -178 185 211 42 84 chr11 3449797 3449868 -147333685 + MIR SINE MIR 18 85 -123 205 180 16 33 chr11 3451118 3451179 -147332374 + A-rich Low_complexity Low_complexity 5 64 0 327 25 0 0 chr11 3453153 3453193 -147330360 + (TG)n Simple_repeat Simple_repeat 1 40 0 195 42 0 0 chr11 3454308 3454332 -147329221 + (A)n Simple_repeat Simple_repeat 1 24 0 2291 81 0 60 chr11 3454825 3455157 -147328396 - AluSx SINE Alu 0 312 1 301 278 131 34 chr11 3455896 3456072 -147327481 - MIR SINE MIR -51 211 19 1787 75 13 0 chr11 3456435 3456662 -147326891 - AluSq SINE Alu -10 303 74 2140 88 35 7 chr11 3456895 3457178 -147326375 - AluY SINE Alu -20 291 1 307 357 27 37 chr11 3458555 3459039 -147324514 + L1MC4 LINE L1 5378 5856 -265 2010 305 88 28 chr11 3459693 3460632 -147322921 - MER110-int LTR ERV1 -1683 2964 1969 2395 131 11 3 chr11 3460638 3460996 -147322557 + L1PA13 LINE L1 5798 6158 -5 4348 155 33 1 chr11 3461422 3462767 -147320786 + L1PB1 LINE L1 4400 5792 -359 186 125 0 54 chr11 3462767 3462823 -147320730 + (TA)n Simple_repeat Simple_repeat 2 54 0 2422 119 28 0 chr11 3462823 3463176 -147320377 + L1PB1 LINE L1 5782 6144 -7 24 0 0 0 chr11 3463186 3463210 -147320343 + AT_rich Low_complexity Low_complexity 1 24 0 68 42 0 0 chr11 3463926 3464022 -147319531 + AT_rich Low_complexity Low_complexity 1 96 0 2260 107 0 0 chr11 3464039 3464338 -147319215 + AluSx SINE Alu 1 299 -13 3164 231 32 14 chr11 3464398 3465179 -147318374 + L1MC4a LINE L1 5255 6049 -1759 6310 205 55 59 chr11 3465723 3466279 -147317274 + L1MC4 LINE L1 6041 6598 -1444 207 100 0 0 chr11 3466279 3466309 -147317244 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 6310 205 55 59 chr11 3466309 3466738 -147316815 + L1MC4 LINE L1 6598 7027 -1015 543 101 0 0 chr11 3466738 3466817 -147316736 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 6310 205 55 59 chr11 3466817 3467742 -147315811 + L1MC4 LINE L1 7027 8041 -1 445 165 156 55 chr11 3468403 3468512 -147315041 + FRAM SINE Alu 46 165 -11 2257 103 3 0 chr11 3470579 3470870 -147312683 - AluSg SINE Alu -18 292 1 793 223 78 18 chr11 3470872 3471038 -147312515 - AluJo SINE Alu -17 295 120 887 227 38 55 chr11 3471469 3471707 -147311846 + L1MEc LINE L1 37 270 -6126 * 1552 205 79 79 chr11 3471703 3471746 -147311807 + L1MEc LINE L1 1942 1984 -4231 377 104 117 13 chr11 3471746 3471823 -147311730 - L1PA4 LINE L1 0 6155 6071 1552 205 79 79 chr11 3471823 3471842 -147311711 + L1MEc LINE L1 1984 2002 -4213 2090 145 0 0 chr11 3471842 3472138 -147311415 + AluSx SINE Alu 1 296 -16 1552 205 79 79 chr11 3472138 3472826 -147310727 + L1MEc LINE L1 2002 2659 -3556 2190 128 16 0 chr11 3472826 3473132 -147310421 + AluSx SINE Alu 1 311 -1 1552 205 79 79 chr11 3473132 3473150 -147310403 + L1MEc LINE L1 2659 2676 -3539 938 155 31 0 chr11 3473214 3473375 -147310178 - L1PA11 LINE L1 -921 5225 5060 6687 93 23 1 chr11 3473375 3474322 -147309231 + L1PA11 LINE L1 5208 6174 0 1086 226 62 21 chr11 3474325 3474661 -147308892 + L1MEc LINE L1 2683 3032 -3183 1176 278 87 4 chr11 3474901 3475462 -147308091 + L1MEc LINE L1 3011 3618 -2597 4068 170 82 11 chr11 3475594 3475606 -147307947 - MER6 DNA MER2_type -29 836 826 1898 103 14 21 chr11 3475606 3475887 -147307666 - AluSq SINE Alu -30 283 5 4068 170 82 11 chr11 3475887 3476632 -147306921 - MER6 DNA MER2_type -39 826 20 2085 129 0 22 chr11 3476632 3476943 -147306610 + AluJb SINE Alu 1 304 -8 4068 170 82 11 chr11 3476943 3476965 -147306588 - MER6 DNA MER2_type -845 20 1 674 86 0 38 chr11 3477078 3477141 -147306412 - MER6 DNA MER2_type -189 676 617 1936 144 10 3 chr11 3477141 3477432 -147306121 + AluSx SINE Alu 1 293 -19 674 86 0 38 chr11 3477432 3477473 -147306080 - MER6 DNA MER2_type -248 617 576 376 268 98 49 chr11 3477706 3478012 -147305541 - MER20B DNA MER1_type -195 588 268 313 313 26 62 chr11 3479228 3479423 -147304130 - MIR SINE MIR -7 255 68 27 0 0 0 chr11 3479474 3479501 -147304052 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr11 3479909 3479945 -147303608 + AT_rich Low_complexity Low_complexity 1 36 0 361 290 67 60 chr11 3480253 3480536 -147303017 - MER65A LTR ERV1 0 445 161 281 301 52 15 chr11 3480643 3480779 -147302774 - MER65B LTR ERV1 -390 141 1 189 322 43 52 chr11 3481047 3481162 -147302391 - L2 LINE L2 -1834 1480 1367 240 283 167 43 chr11 3481379 3481793 -147301760 - L2 LINE L2 -2211 1103 639 9704 65 16 82 chr11 3482508 3483991 -147299562 - SVA Other Other 0 1386 1 1256 120 0 22 chr11 3483996 3484179 -147299374 - AluSg/x SINE Alu -12 300 122 267 255 0 32 chr11 3484311 3484405 -147299148 - MLT1H LTR MaLR -378 171 81 502 301 59 0 chr11 3484474 3484627 -147298926 + L1MC3 LINE L1 5453 5614 -2194 959 185 5 37 chr11 3484638 3484827 -147298726 - AluJo SINE Alu -129 183 1 443 278 53 47 chr11 3484883 3485221 -147298332 + L1MDa LINE L1 1421 1760 -4780 * 1978 205 58 42 chr11 3485220 3485767 -147297786 + L1MC3 LINE L1 6675 7230 -555 256 261 45 23 chr11 3485769 3485857 -147297696 + MER65A LTR ERV1 52 141 -304 366 291 65 38 chr11 3485977 3486238 -147297315 + MER65A LTR ERV1 175 442 -3 26 0 0 0 chr11 3486802 3486828 -147296725 + AT_rich Low_complexity Low_complexity 1 26 0 326 308 26 62 chr11 3486879 3487074 -147296479 + MIR SINE MIR 68 255 -7 1855 130 16 16 chr11 3487542 3487864 -147295689 - L1 LINE L1 -908 5238 4917 595 196 0 0 chr11 3487864 3487956 -147295597 - MER2 DNA MER2_type -252 93 2 355 292 10 0 chr11 3487964 3488060 -147295493 + MIR SINE MIR 163 259 -3 670 171 137 0 chr11 3488093 3488210 -147295343 + FLAM_C SINE Alu 1 133 0 4876 146 58 16 chr11 3489768 3490704 -147292849 + L1MA8 LINE L1 5315 6289 -2 366 345 77 5 chr11 3493688 3493897 -147289656 - MIR SINE MIR -5 257 34 636 250 48 30 chr11 3495522 3495865 -147287688 - L1MDa LINE L1 -4811 1571 1173 740 256 26 42 chr11 3495872 3496074 -147287479 - L1MC/D LINE L1 -605 5561 5443 523 273 125 30 chr11 3496088 3496352 -147287201 + MLT1H LTR MaLR 17 305 -244 273 283 81 30 chr11 3496389 3496488 -147287065 + L2 LINE L2 3205 3308 -5 2293 83 7 0 chr11 3496715 3497004 -147286549 + AluSq SINE Alu 1 291 -22 3807 164 45 10 chr11 3497327 3498045 -147285508 - L1MA8 LINE L1 -3 6288 5546 21 0 0 0 chr11 3498324 3498345 -147285208 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 3498457 3498489 -147285064 + AT_rich Low_complexity Low_complexity 1 32 0 239 246 27 27 chr11 3498589 3498699 -147284854 + L1ME LINE L1 5677 5786 -376 199 194 83 69 chr11 3498727 3498799 -147284754 - L2 LINE L2 -5 3308 3236 596 228 10 56 chr11 3498819 3499016 -147284537 + L1MA9 LINE L1 6095 6282 -30 212 333 69 0 chr11 3500109 3500196 -147283357 + MIR SINE MIR 30 122 -86 255 176 39 0 chr11 3500231 3500282 -147283271 - MER58A DNA MER1_type -1 223 171 656 238 0 0 chr11 3500295 3500417 -147283136 - MER58A DNA MER1_type 0 122 1 234 0 0 0 chr11 3500849 3500875 -147282678 + (TG)n Simple_repeat Simple_repeat 2 27 0 217 254 90 15 chr11 3500884 3500951 -147282602 - MIR SINE MIR -190 72 1 251 250 204 0 chr11 3501080 3501188 -147282365 + MIR SINE MIR 69 198 -64 207 339 43 0 chr11 3501508 3501623 -147281930 - L2 LINE L2 -1668 1646 1527 354 307 66 48 chr11 3501817 3501983 -147281570 + MIR SINE MIR 55 223 -39 218 342 34 68 chr11 3501983 3502249 -147281304 + L2 LINE L2 2624 2880 -434 200 368 28 28 chr11 3502741 3502847 -147280706 - MIR SINE MIR -67 141 36 333 0 0 0 chr11 3503988 3504025 -147279528 + (T)n Simple_repeat Simple_repeat 1 37 0 293 274 87 18 chr11 3504123 3504242 -147279311 + MIR SINE MIR 3 130 -78 1505 194 48 50 chr11 3505649 3506045 -147277508 - MLT2C1 LTR ERVL -2 395 1 338 185 15 0 chr11 3506069 3506134 -147277419 - L1 LINE L1 -1092 5054 4989 30 27 0 0 chr11 3506271 3506308 -147277245 + AT_rich Low_complexity Low_complexity 1 37 0 825 180 24 120 chr11 3506868 3507118 -147276435 - LTR8A LTR ERV1 -468 259 34 1849 125 42 0 chr11 3507130 3507417 -147276136 - L1PA16 LINE L1 -5 6161 5863 767 288 132 20 chr11 3507475 3507878 -147275675 - L1ME4a LINE L1 -217 5904 5457 27 0 0 0 chr11 3509613 3509640 -147273913 + AT_rich Low_complexity Low_complexity 1 27 0 1759 110 98 0 chr11 3512297 3512579 -147270974 + AluSp SINE Alu 4 310 0 245 220 20 0 chr11 3512706 3512756 -147270797 - MIR3 SINE MIR -7 201 151 258 270 16 0 chr11 3512758 3512821 -147270732 - MER113 DNA MER1_type? -4 517 454 297 128 0 0 chr11 3513369 3513416 -147270137 + (CA)n Simple_repeat Simple_repeat 2 48 0 7011 124 20 8 chr11 3515241 3516942 -147266611 + L1MA3 LINE L1 4583 6305 0 231 132 0 57 chr11 3516950 3517003 -147266550 + (TAAAAA)n Simple_repeat Simple_repeat 2 51 0 2234 102 0 0 chr11 3517005 3517310 -147266243 + AluSx SINE Alu 1 305 0 180 152 0 0 chr11 3517705 3517738 -147265815 + (TATG)n Simple_repeat Simple_repeat 2 34 0 224 235 0 44 chr11 3518423 3518491 -147265062 + G-rich Low_complexity Low_complexity 6 70 0 22 0 0 0 chr11 3519003 3519025 -147264528 + AT_rich Low_complexity Low_complexity 1 22 0 6518 114 26 48 chr11 3519062 3520408 -147263145 - L1MA3 LINE L1 0 6305 4987 * 7209 54 13 1 chr11 3520382 3521506 -147262047 - L1PA5 LINE L1 -2 6152 5018 367 0 0 0 chr11 3521506 3521547 -147262006 + L1P LINE L1 1264 1304 -4842 * 19967 111 15 30 chr11 3521544 3525453 -147258100 + L1PA7 LINE L1 252 4182 -2279 616 122 0 0 chr11 3525454 3525552 -147258001 - L1P LINE L1 -2793 3353 3256 * 43128 51 8 1 chr11 3525546 3531663 -147251890 - L1PA4 LINE L1 -4 6151 1 517 146 39 0 chr11 3531670 3531773 -147251780 - L1P LINE L1 -2889 3257 3151 11397 78 29 16 chr11 3531773 3534040 -147249513 + L1PA7 LINE L1 4185 6465 -4 227 316 13 0 chr11 3534112 3534191 -147249362 - MIR SINE MIR -110 152 73 1985 181 16 8 chr11 3535249 3535619 -147247934 + L1MD3 LINE L1 7623 7995 0 2520 78 0 0 chr11 3536312 3536620 -147246933 - AluY SINE Alu -3 308 1 575 315 50 0 chr11 3537557 3537738 -147245815 - MIR SINE MIR -65 197 8 231 167 0 0 chr11 3538008 3538050 -147245503 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 357 186 36 14 chr11 3539067 3539207 -147244346 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 3282 237 60 10 chr11 3540049 3540911 -147242642 + L1ME3A LINE L1 5258 6162 -8 318 322 67 52 chr11 3542041 3542308 -147241245 + MARNA DNA Mariner 280 550 -36 527 242 8 8 chr11 3544402 3544526 -147239027 + L2 LINE L2 3187 3310 -3 556 251 70 20 chr11 3546175 3546347 -147237206 + MIR SINE MIR 41 217 -45 1647 85 55 4 chr11 3547427 3547663 -147235890 - L1MA1 LINE L1 0 6302 6055 557 283 108 14 chr11 3547713 3547859 -147235694 + L2 LINE L2 1783 1914 -1400 2301 156 27 16 chr11 3547859 3548230 -147235323 - THE1C LTR MaLR 0 375 1 557 283 108 14 chr11 3548230 3548369 -147235184 + L2 LINE L2 1914 2095 -1219 905 157 42 15 chr11 3548589 3548896 -147234657 + THE1C LTR MaLR 1 375 0 1445 221 60 38 chr11 3548936 3549302 -147234251 - MLT1A2 LTR MaLR 0 374 1 360 383 43 0 chr11 3550837 3551072 -147232481 + LTR16A LTR ERVL 206 450 0 916 99 14 14 chr11 3552239 3552380 -147231173 + AluSp SINE Alu 1 141 -172 5302 133 22 107 chr11 3552506 3553631 -147229922 + L1P LINE L1 347 1376 -4770 2576 195 42 7 chr11 3554217 3554673 -147228880 + MER70A LTR ERVL 1 472 0 1042 149 80 0 chr11 3554992 3555180 -147228373 - L1P LINE L1 -2093 4053 3851 * 6146 175 42 12 chr11 3555177 3555772 -147227781 + L1P LINE L1 4032 4607 -1539 544 150 0 0 chr11 3555772 3555852 -147227701 + MADE1 DNA Mariner 1 80 0 6146 175 42 12 chr11 3555852 3556185 -147227368 + L1P LINE L1 4607 4928 -1218 1924 40 9 4 chr11 3556185 3556401 -147227152 + L1PA5 LINE L1 5919 6146 -8 6146 175 42 12 chr11 3556401 3556675 -147226878 + L1P LINE L1 4928 5272 -874 1496 224 55 33 chr11 3557159 3557525 -147226028 - MLT1A2 LTR MaLR 0 374 1 280 275 83 33 chr11 3557805 3557925 -147225628 + LTR16A1 LTR ERVL 330 455 -2 1992 242 92 70 chr11 3558602 3559339 -147224214 + L1MB8 LINE L1 3059 3779 -2367 2020 125 0 0 chr11 3559339 3559620 -147223933 + AluSx SINE Alu 32 312 0 1992 242 92 70 chr11 3559620 3559851 -147223702 + L1MB8 LINE L1 3779 4004 -2142 465 148 34 23 chr11 3559851 3559939 -147223614 + L1MA10 LINE L1 6238 6326 -8 1992 242 92 70 chr11 3559939 3559950 -147223603 + L1MB8 LINE L1 4004 4013 -2133 3396 185 28 17 chr11 3559950 3560641 -147222912 + L1MB8 LINE L1 5481 6178 0 1992 242 92 70 chr11 3560641 3560725 -147222828 + L1MB8 LINE L1 4013 4147 -1999 525 280 63 5 chr11 3560733 3560922 -147222631 + L1ME2 LINE L1 4579 4778 -1368 1314 237 188 26 chr11 3560939 3561202 -147222351 + L1ME2 LINE L1 4856 5075 -1089 1614 151 3 69 chr11 3561202 3561521 -147222032 + AluJb SINE Alu 1 298 -14 1314 237 188 26 chr11 3561521 3562267 -147221286 + L1ME2 LINE L1 5075 6087 -77 1670 137 78 18 chr11 3562267 3562551 -147221002 - AluJo SINE Alu -11 301 1 1314 237 188 26 chr11 3562551 3562644 -147220909 + L1ME2 LINE L1 6087 6164 0 236 288 17 0 chr11 3562960 3563019 -147220534 + L2 LINE L2 3196 3255 -17 1098 219 44 9 chr11 3563316 3563544 -147220009 - MER8 DNA MER2_type -3 236 1 23 33 0 0 chr11 3565627 3565657 -147217896 + AT_rich Low_complexity Low_complexity 1 30 0 425 250 43 43 chr11 3567959 3568123 -147215430 + MIR SINE MIR 23 186 -76 992 103 122 0 chr11 3568716 3568872 -147214681 - MER30 DNA MER1_type -55 175 1 264 315 0 0 chr11 3568945 3569037 -147214516 + MIR SINE MIR 167 258 -4 371 323 65 26 chr11 3569050 3569205 -147214348 - L2 LINE L2 -8 3264 3104 237 304 244 7 chr11 3569521 3569656 -147213897 + MIR SINE MIR 83 249 -13 421 277 62 28 chr11 3570283 3570460 -147213093 - L2 LINE L2 -8 3305 3123 1254 161 70 21 chr11 3570461 3570703 -147212850 + L1M2 LINE L1 5459 5712 -579 4361 144 57 32 chr11 3570715 3571048 -147212505 + L1MA8 LINE L1 5458 5781 -510 216 0 0 0 chr11 3571048 3571072 -147212481 + (CA)n Simple_repeat Simple_repeat 1 24 0 4361 144 57 32 chr11 3571072 3571551 -147212002 + L1MA8 LINE L1 5781 6290 -1 1154 304 82 25 chr11 3571557 3572356 -147211197 - L2 LINE L2 -179 3134 2292 7156 46 17 2 chr11 3572361 3573257 -147210296 - L1PA5 LINE L1 -1027 5119 4211 7803 46 3 1 chr11 3573257 3574275 -147209278 + L1PA5 LINE L1 5136 6152 -2 253 157 229 29 chr11 3574275 3574345 -147209208 - MER5A DNA MER1_type -97 92 9 192 77 0 0 chr11 3574385 3574411 -147209142 + (A)n Simple_repeat Simple_repeat 1 26 0 394 259 299 11 chr11 3574413 3574687 -147208866 - L2 LINE L2 -1028 2286 1934 1222 134 24 14 chr11 3574691 3574900 -147208653 + L1PB1 LINE L1 5941 6151 0 1959 190 61 10 chr11 3574914 3575599 -147207954 + L1M3 LINE L1 4898 5614 -566 228 220 125 56 chr11 3576091 3576253 -147207300 - MIR SINE MIR -70 192 17 570 147 0 40 chr11 3576414 3576564 -147206989 + (AGGGGG)n Simple_repeat Simple_repeat 5 148 0 1400 166 14 0 chr11 3577752 3577975 -147205578 + MER1B DNA MER1_type 1 226 -71 1072 124 16 32 chr11 3578929 3579114 -147204439 + L1PA13 LINE L1 5982 6163 0 600 63 13 0 chr11 3579590 3579669 -147203884 - MADE1 DNA Mariner 0 80 1 1056 294 95 27 chr11 3579884 3580485 -147203068 - L2 LINE L2 -422 2892 2251 205 191 16 48 chr11 3580545 3580608 -147202945 + GA-rich Low_complexity Low_complexity 5 65 0 314 329 72 6 chr11 3580619 3580786 -147202767 - L2 LINE L2 -1424 1890 1713 291 397 49 0 chr11 3583640 3583824 -147199729 - L3 LINE CR1 -61 1516 1324 3591 166 68 7 chr11 3584542 3585261 -147198292 - L1MA4 LINE L1 -11 6289 5527 3839 122 28 18 chr11 3585261 3585868 -147197685 + MER50-int LTR ERV1 6591 7203 -2 2533 185 41 126 chr11 3585868 3586485 -147197068 + MER50 LTR ERV1 10 549 -185 2029 152 3 0 chr11 3586485 3586794 -147196759 - AluSx SINE Alu 0 312 3 2533 185 41 126 chr11 3586794 3586955 -147196598 + MER50 LTR ERV1 549 722 -12 1374 174 123 119 chr11 3586995 3587540 -147196013 + LTR10B LTR ERV1 1 547 0 7321 250 41 28 chr11 3587540 3592382 -147191171 + LTR10B-int LTR ERV1 5 3922 -2727 803 174 48 48 chr11 3592391 3592558 -147190995 - LTR5 LTR ERVK -14 955 789 598 174 0 109 chr11 3592602 3592740 -147190813 - HERVKC4 LTR ERVK -4526 736 614 * 4039 172 20 6 chr11 3592710 3593412 -147190141 - HERVKC4 LTR ERVK -6531 712 1 3623 204 21 63 chr11 3593424 3594417 -147189136 - LTR5 LTR ERVK -14 955 5 3898 277 13 17 chr11 3594419 3595487 -147188066 + LTR10B-int LTR ERV1 4941 6004 -1781 6539 239 30 27 chr11 3595537 3597189 -147186364 + LTR10B-int LTR ERV1 4994 6649 0 338 153 68 126 chr11 3597243 3597433 -147186120 + LTR10B LTR ERV1 107 285 -262 1319 174 41 16 chr11 3597492 3597734 -147185819 + LTR10B LTR ERV1 300 547 0 4234 236 117 92 chr11 3597735 3598322 -147185231 + MSTC-int LTR MaLR 76 647 -1088 3743 158 49 29 chr11 3598322 3598980 -147184573 + LTR51 LTR ERV1 1 671 0 4234 236 117 92 chr11 3598980 3600010 -147183543 + MSTC-int LTR MaLR 647 1733 -2 2224 146 72 46 chr11 3600017 3600434 -147183119 + MSTC LTR MaLR 1 428 0 184 333 36 12 chr11 3602317 3602401 -147181152 - L2 LINE L2 -36 3277 3192 447 327 146 16 chr11 3602769 3603139 -147180414 - L2 LINE L2 -640 2674 2257 1581 294 153 59 chr11 3603238 3604504 -147179049 + L2 LINE L2 1614 2987 -285 289 297 156 23 chr11 3605361 3605617 -147177936 - L2 LINE L2 -1160 2154 1865 2138 91 0 0 chr11 3605854 3606141 -147177412 + AluY SINE Alu 1 287 -24 202 193 91 57 chr11 3606198 3606286 -147177267 - MIR SINE MIR -78 184 94 543 222 0 128 chr11 3606999 3607233 -147176320 + MER3 DNA MER1_type 1 204 -5 359 323 63 26 chr11 3609119 3609308 -147174245 - L3 LINE CR1 -59 1518 1323 2043 189 27 5 chr11 3609733 3610108 -147173445 + MLT1B LTR MaLR 3 385 -5 2700 184 107 23 chr11 3610111 3610627 -147172926 + MLT1B-int LTR MaLR 5 678 -693 2186 157 18 32 chr11 3610627 3611061 -147172492 + L1MA5 LINE L1 5868 6295 -5 2700 184 107 23 chr11 3611061 3611232 -147172321 + MLT1B-int LTR MaLR 678 833 -538 1469 212 119 11 chr11 3611522 3611876 -147171677 + MLT1B-int LTR MaLR 978 1369 -2 1746 153 150 23 chr11 3611878 3612224 -147171329 + MLT1B LTR MaLR 1 390 0 674 273 73 78 chr11 3613115 3613473 -147170080 + L2 LINE L2 2433 2790 -524 1256 144 158 78 chr11 3613473 3613820 -147169733 + THE1C LTR MaLR 1 375 0 674 273 73 78 chr11 3613820 3613845 -147169708 + L2 LINE L2 2790 2814 -500 346 306 51 25 chr11 3614073 3614269 -147169284 + L1MEc LINE L1 1620 1820 -4576 194 313 50 0 chr11 3616053 3616133 -147167420 - L2 LINE L2 -679 2635 2552 584 297 71 53 chr11 3617169 3617580 -147165973 - L2 LINE L2 -635 2679 2262 2086 301 154 32 chr11 3617682 3617773 -147165780 + L2 LINE L2 1601 1680 -1634 372 22 0 0 chr11 3617773 3617818 -147165735 + (CA)n Simple_repeat Simple_repeat 2 46 0 2086 301 154 32 chr11 3617818 3618953 -147164600 + L2 LINE L2 1680 2977 -337 308 336 107 24 chr11 3619843 3620179 -147163374 - L2 LINE L2 -1240 2074 1711 187 304 83 48 chr11 3620256 3620424 -147163129 - MIR SINE MIR -38 224 51 222 322 33 0 chr11 3620671 3620761 -147162792 - MIR SINE MIR -18 244 152 30 69 0 0 chr11 3620761 3620819 -147162734 + AT_rich Low_complexity Low_complexity 1 58 0 506 246 222 0 chr11 3621147 3621318 -147162235 + MER3 DNA MER1_type 1 209 0 1719 164 134 3 chr11 3623612 3623704 -147159849 + MER7A DNA MER2_type 3 82 -2956 776 98 98 8 chr11 3623704 3623827 -147159726 - L1PA13 LINE L1 -5 6158 6025 1719 164 134 3 chr11 3623827 3624039 -147159514 + MER7A DNA MER2_type 82 345 -1 338 264 74 31 chr11 3624058 3624221 -147159332 + MLT1I LTR MaLR 1 170 -239 4118 148 26 6 chr11 3624221 3624884 -147158669 + L1PA13 LINE L1 5482 6157 -6 767 119 0 9 chr11 3624977 3625086 -147158467 + L1PA13 LINE L1 5777 5884 -279 235 257 14 57 chr11 3625086 3625156 -147158397 + MLT1I LTR MaLR 177 243 -166 21 36 0 0 chr11 3625220 3625248 -147158305 + AT_rich Low_complexity Low_complexity 1 28 0 392 237 44 51 chr11 3625344 3625472 -147158081 + MLT1I LTR MaLR 278 439 -11 6939 117 26 16 chr11 3625690 3626687 -147156866 - LTR13 LTR ERVK 0 1007 1 7440 227 14 12 chr11 3626687 3628980 -147154573 - HERVK13 LTR ERVK 0 8116 5812 3715 231 126 12 chr11 3628974 3629939 -147153614 - HERVK13 LTR ERVK -2473 5643 4569 * 555 289 6 0 chr11 3629929 3630088 -147153465 - HERVK13 LTR ERVK -3990 4126 3967 * 1150 208 73 118 chr11 3630093 3630710 -147152843 - HERVK13 LTR ERVK -6814 1302 714 926 119 15 0 chr11 3630723 3630857 -147152696 - HERVK13 LTR ERVK -7907 209 74 906 179 0 6 chr11 3631085 3631247 -147152306 - L1P LINE L1 -1132 5014 4854 2223 162 65 25 chr11 3631254 3631698 -147151855 - L1MA8 LINE L1 -345 6967 6506 * 8671 220 112 28 chr11 3631675 3631895 -147151658 - L1MA8 LINE L1 -1431 5736 5536 2230 78 7 46 chr11 3631895 3632201 -147151352 - AluY SINE Alu -17 294 1 8671 220 112 28 chr11 3632201 3632687 -147150866 - L1MA8 LINE L1 -1631 5536 5093 1805 143 7 7 chr11 3632687 3632973 -147150580 - AluJb SINE Alu -15 297 12 8671 220 112 28 chr11 3632973 3636346 -147147207 - L1MA8 LINE L1 -2074 5093 1622 285 185 87 0 chr11 3637353 3637445 -147146108 + Charlie2 DNA MER1_type 2690 2789 -73 2254 198 105 7 chr11 3638486 3638916 -147144637 + MER70A LTR ERVL 1 472 0 1041 140 91 0 chr11 3639235 3639421 -147144132 - L1PA12 LINE L1 -2093 4053 3851 * 5228 151 51 7 chr11 3639418 3640010 -147143543 + L1PA12 LINE L1 4032 4681 -1465 507 175 0 0 chr11 3640010 3640090 -147143463 + MADE1 DNA Mariner 1 80 0 5228 151 51 7 chr11 3640090 3640423 -147143130 + L1PA12 LINE L1 4681 4998 -1148 2014 43 4 0 chr11 3640423 3640642 -147142911 + L1PA5 LINE L1 5919 6149 -5 5981 92 68 2 chr11 3640666 3641748 -147141805 + L1PA12 LINE L1 5020 6164 -4 1191 293 82 25 chr11 3642627 3643184 -147140369 - MLT2F LTR ERVL 0 628 7 217 306 197 0 chr11 3645221 3645404 -147138149 - MIR SINE MIR -30 232 14 946 110 0 0 chr11 3647749 3647876 -147135677 + L1PA14 LINE L1 6023 6149 -12 1767 113 13 0 chr11 3649831 3650070 -147133483 - AluSc SINE Alu -16 293 52 233 277 0 15 chr11 3651128 3651193 -147132360 + MIR SINE MIR 88 151 -111 423 0 0 0 chr11 3651600 3651647 -147131906 + (TG)n Simple_repeat Simple_repeat 2 48 0 190 250 73 15 chr11 3651880 3651948 -147131605 + MIR SINE MIR 123 194 -68 1505 113 50 4 chr11 3653118 3653378 -147130175 - L1PA8A LINE L1 -465 5666 5469 2657 112 32 10 chr11 3653399 3653802 -147129751 - L1PA8 LINE L1 -7 6165 5754 1092 242 125 50 chr11 3653802 3654219 -147129334 + MLT2B1 LTR ERVL 72 519 -1 312 182 91 0 chr11 3655101 3655167 -147128386 + L1MEc LINE L1 2312 2383 -4013 14761 178 103 47 chr11 3655229 3656879 -147126674 + L1MA1 LINE L1 16 1572 -5993 559 153 41 0 chr11 3656879 3656977 -147126576 + AluSg/x SINE Alu 211 312 0 14761 178 103 47 chr11 3656977 3658325 -147125228 + L1MA1 LINE L1 1572 2843 -4722 2495 117 45 17 chr11 3658325 3658677 -147124876 + THE1B LTR MaLR 1 362 -2 14761 178 103 47 chr11 3658677 3658853 -147124700 + L1MA1 LINE L1 2843 3008 -4557 2016 132 10 3 chr11 3658853 3659149 -147124404 + AluSx SINE Alu 1 298 -14 14761 178 103 47 chr11 3659149 3659839 -147123714 + L1MA1 LINE L1 3008 3658 -3907 1786 236 126 37 chr11 3659839 3660348 -147123205 + MLT2B3 LTR ERVL 1 554 0 14761 178 103 47 chr11 3660348 3660654 -147122899 + L1MA1 LINE L1 3658 4517 -3048 1423 129 62 17 chr11 3660623 3661013 -147122540 + L1MA1 LINE L1 6673 7044 -677 * 1843 153 81 36 chr11 3661013 3661372 -147122181 + THE1C LTR MaLR 1 375 0 1423 129 62 17 chr11 3661372 3661927 -147121626 + L1MA1 LINE L1 7044 7721 0 714 251 100 39 chr11 3661934 3662344 -147121209 + L1MEc LINE L1 2380 2814 -3401 256 188 50 38 chr11 3662361 3662441 -147121112 - L1 LINE L1 -2635 3511 3431 2088 263 91 12 chr11 3662447 3663268 -147120285 - L1P LINE L1 -2762 3384 2499 949 201 51 55 chr11 3663274 3663331 -147120222 + L1MA9 LINE L1 5512 5568 -744 1305 179 236 23 chr11 3663331 3663682 -147119871 - MSTA LTR MaLR -2 426 1 949 201 51 55 chr11 3663682 3663898 -147119655 + L1MA9 LINE L1 5568 5784 -528 949 228 166 13 chr11 3663902 3664288 -147119265 + L1MA9 LINE L1 5825 6269 -43 36372 93 21 17 chr11 3664374 3667648 -147115905 + L1PA6 LINE L1 2 3315 -2839 2392 90 0 3 chr11 3667648 3667959 -147115594 + AluY SINE Alu 2 311 0 36372 93 21 17 chr11 3667959 3670807 -147112746 + L1PA6 LINE L1 3315 6150 -4 239 325 136 31 chr11 3670963 3671154 -147112399 - L2 LINE L2 -2728 586 376 205 337 51 10 chr11 3671308 3671406 -147112147 + MIR SINE MIR 66 167 -95 828 191 82 0 chr11 3671407 3671554 -147111999 + FRAM SINE Alu 1 151 -25 2792 157 29 15 chr11 3671608 3672087 -147111466 + L1PB2 LINE L1 5663 6148 -3 289 300 20 30 chr11 3673625 3673725 -147109828 - MIR SINE MIR -140 122 24 23 0 0 0 chr11 3674683 3674706 -147108847 + AT_rich Low_complexity Low_complexity 1 23 0 182 376 116 29 chr11 3674719 3675065 -147108488 - L2 LINE L2 -41 3231 2856 692 266 71 38 chr11 3676180 3676610 -147106943 - LTR33 LTR ERVL -40 481 10 340 299 111 7 chr11 3680068 3680212 -147103341 - MIR SINE MIR -76 186 28 534 299 117 28 chr11 3681229 3681587 -147101966 + LTR16B LTR ERVL 15 404 -60 7177 28 14 29 chr11 3681624 3682982 -147100571 - L1PA4 LINE L1 -3 6152 4789 257 339 112 13 chr11 3683006 3683239 -147100314 + HERV16 LTR ERVL 313 568 -4428 305 252 73 24 chr11 3683338 3683461 -147100092 + HERV16 LTR ERVL 719 847 -4149 1906 140 107 6 chr11 3683493 3683821 -147099732 + LTR1B LTR ERV1 44 404 -422 1023 224 38 0 chr11 3683818 3684028 -147099525 + LTR1B LTR ERV1 599 816 -10 * 2460 216 67 34 chr11 3684030 3684586 -147098967 + HUERS-P2 LTR ERV1 2 575 -2513 * 13333 146 55 49 chr11 3684583 3686957 -147096596 + HUERS-P2 LTR ERV1 701 3088 0 4476 152 58 14 chr11 3686957 3687740 -147095813 + LTR1B LTR ERV1 1 817 -9 334 364 94 19 chr11 3687919 3688227 -147095326 + HERV16 LTR ERVL 1246 1576 -3420 396 303 98 0 chr11 3688398 3688530 -147095023 + HERV16 LTR ERVL 1854 1998 -2998 1294 319 91 20 chr11 3688759 3689794 -147093759 + HERV16 LTR ERVL 2543 3654 -2000 503 349 53 11 chr11 3689813 3690094 -147093459 + HERV16 LTR ERVL 3400 3692 -1304 692 319 85 54 chr11 3690112 3690943 -147092610 + HERV16 LTR ERVL 4017 4906 -612 348 283 87 91 chr11 3690998 3691492 -147092061 + HERV16 LTR ERVL 4505 4996 0 739 307 101 4 chr11 3691492 3691769 -147091784 + LTR16B LTR ERVL 1 304 -160 27312 126 40 61 chr11 3692067 3698384 -147085169 + L1PA8 LINE L1 1 6169 -3 412 195 62 70 chr11 3699155 3699283 -147084270 + MER34B LTR ERV1 5 131 -434 370 177 177 10 chr11 3699516 3699612 -147083941 + MER34B LTR ERV1 450 561 -4 1815 120 106 0 chr11 3700384 3700659 -147082894 - AluSp SINE Alu -9 304 1 3380 137 131 17 chr11 3701034 3701727 -147081826 - MER4E LTR ERV1 -7 772 1 1205 128 11 6 chr11 3701901 3702081 -147081472 + LTR1B LTR ERV1 1 181 -645 2762 120 84 50 chr11 3702436 3702961 -147080592 + LTR1B LTR ERV1 282 824 -2 1029 276 138 58 chr11 3703701 3704432 -147079121 + HERV16 LTR ERVL 1841 2630 -2366 338 215 25 13 chr11 3704469 3704548 -147079005 + MER3 DNA MER1_type 29 108 -101 1162 244 95 15 chr11 3705416 3705817 -147077736 - L1 LINE L1 -3389 2757 2325 586 217 151 7 chr11 3705984 3706136 -147077417 + MLT1A1 LTR MaLR 1 174 -191 713 162 184 11 chr11 3706693 3706872 -147076681 - L1PB4 LINE L1 -4 6152 5943 1003 159 19 0 chr11 3707402 3707559 -147075994 - AluSp SINE Alu -17 296 137 2165 117 7 3 chr11 3707559 3707858 -147075695 - AluSc SINE Alu -9 300 1 220 216 0 0 chr11 3708418 3708469 -147075084 + A-rich Low_complexity Low_complexity 1 51 0 1834 131 3 11 chr11 3708470 3708752 -147074801 - AluSp SINE Alu -33 280 1 847 329 54 19 chr11 3709919 3710329 -147073224 - LTR16A LTR ERVL 0 450 27 3557 147 65 7 chr11 3710400 3710980 -147072573 - LTR18B LTR ERVL 0 614 1 180 77 0 0 chr11 3711717 3711743 -147071810 + (CA)n Simple_repeat Simple_repeat 1 26 0 362 312 24 0 chr11 3712345 3712470 -147071083 - MLT1F1 LTR MaLR -372 195 68 218 322 91 16 chr11 3714207 3714328 -147069225 + MIR SINE MIR 105 234 -28 22 0 0 0 chr11 3715348 3715370 -147068183 + AT_rich Low_complexity Low_complexity 1 22 0 2023 131 23 7 chr11 3715370 3715676 -147067877 - AluSx SINE Alu -1 311 1 278 225 45 81 chr11 3715843 3715954 -147067599 + L1ME3 LINE L1 6048 6154 -8 259 182 45 34 chr11 3716112 3716200 -147067353 + L1M4 LINE L1 3174 3262 -2884 581 326 38 4 chr11 3717905 3718144 -147065409 - MIR SINE MIR -14 248 2 294 310 39 26 chr11 3721773 3721928 -147061625 + MIR SINE MIR 105 261 -1 240 277 0 96 chr11 3723053 3723147 -147060406 + L1ME3 LINE L1 6046 6130 -32 612 304 78 4 chr11 3725109 3725339 -147058214 - MIR SINE MIR -14 248 2 22 35 0 0 chr11 3726287 3726316 -147057237 + AT_rich Low_complexity Low_complexity 1 29 0 3932 34 0 2 chr11 3728925 3729369 -147054184 + L1PA4 LINE L1 5713 6155 0 257 297 47 0 chr11 3731000 3731064 -147052489 - L2 LINE L2 -51 3221 3155 2331 78 0 3 chr11 3732157 3732452 -147051101 + AluY SINE Alu 1 294 -17 215 330 106 11 chr11 3735992 3736086 -147047467 - MIR SINE MIR -75 133 31 534 204 10 19 chr11 3736619 3736722 -147046831 + MER5A DNA MER1_type 9 110 -79 470 287 139 3 chr11 3736883 3737080 -147046473 - MIR SINE MIR -27 235 15 192 238 71 0 chr11 3737557 3737599 -147045954 + MIR SINE MIR 105 149 -59 367 259 89 30 chr11 3739334 3739469 -147044084 + L2 LINE L2 3129 3271 -1 505 203 62 23 chr11 3739547 3739675 -147043878 - MIR SINE MIR 0 262 130 396 204 29 48 chr11 3740154 3740257 -147043296 + L2 LINE L2 3169 3269 -44 320 244 150 33 chr11 3740485 3740698 -147042855 + HAL1 LINE L1 2270 2507 0 261 0 0 0 chr11 3741657 3741686 -147041867 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 228 349 66 9 chr11 3742283 3742389 -147041164 - L2 LINE L2 -15 3257 3146 252 0 0 0 chr11 3743699 3743727 -147039826 + (TG)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr11 3744032 3744056 -147039497 + AT_rich Low_complexity Low_complexity 1 24 0 231 227 34 11 chr11 3744192 3744280 -147039273 + T-rich Low_complexity Low_complexity 5 94 0 342 337 59 19 chr11 3744755 3745109 -147038444 - LTR67 LTR ERVL -19 538 137 456 323 45 45 chr11 3745236 3745502 -147038051 + MLT1I LTR MaLR 98 363 -46 275 297 42 34 chr11 3745537 3745655 -147037898 - LTR67 LTR ERVL -437 120 2 1076 48 0 0 chr11 3745946 3746072 -147037481 + L1PA4 LINE L1 6027 6152 -3 22 35 0 0 chr11 3746072 3746101 -147037452 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 3746148 3746169 -147037384 + AT_rich Low_complexity Low_complexity 1 21 0 1362 203 22 120 chr11 3746366 3746766 -147036787 - MLT1A1 LTR MaLR 0 365 5 195 375 71 5 chr11 3748381 3748565 -147034988 - L2 LINE L2 -1647 1667 1472 746 284 50 0 chr11 3748699 3748900 -147034653 + LTR16C LTR ERVL 150 360 -131 346 277 134 9 chr11 3748893 3749005 -147034548 + LTR16C LTR ERVL 237 362 -129 * 816 74 0 40 chr11 3749006 3749155 -147034398 + (TCCCC)n Simple_repeat Simple_repeat 3 145 0 20933 94 32 12 chr11 3749257 3752403 -147031150 - L1P LINE L1 -1021 5125 1917 5613 111 15 1 chr11 3752405 3753616 -147029937 + L1PA11 LINE L1 4801 6024 -150 303 190 0 147 chr11 3753619 3753735 -147029818 - LTR57-int LTR ERVL -4211 1132 1034 * 309 187 0 138 chr11 3753636 3753759 -147029794 - MER4-int LTR ERV1 -7021 1099 994 * 506 203 25 131 chr11 3753749 3753985 -147029568 - MER4-int LTR ERV1 -4554 2044 1834 876 236 69 29 chr11 3753985 3754231 -147029322 - MER34C LTR ERV1 -172 413 158 539 231 7 21 chr11 3754231 3754374 -147029179 - MER4-int LTR ERV1 -4132 991 851 2178 164 36 68 chr11 3754491 3754992 -147028561 - MER4-int LTR ERV1 -6705 832 348 2687 127 65 59 chr11 3754998 3755547 -147028006 + LTR9 LTR ERV1 1 766 -28 895 186 5 69 chr11 3755547 3755735 -147027818 + HUERS-P3b LTR ERV1 358 533 -6885 3116 161 63 14 chr11 3755769 3756339 -147027214 + HUERS-P3b LTR ERV1 742 1339 -7580 * 3594 121 0 4 chr11 3756331 3756826 -147026727 + HUERS-P3b LTR ERV1 1532 2024 -5394 1410 48 0 0 chr11 3756823 3756989 -147026564 + HUERS-P3b LTR ERV1 2477 2642 -4776 * 1612 155 49 0 chr11 3756989 3757253 -147026300 - LTR8 LTR ERV1 -250 441 165 376 272 24 0 chr11 3757375 3757500 -147026053 + LTR16C LTR ERVL 364 491 0 270 0 0 0 chr11 3757593 3757623 -147025930 + (T)n Simple_repeat Simple_repeat 1 30 0 2440 130 107 18 chr11 3758133 3758524 -147025029 - MSTA LTR MaLR -2 426 1 366 241 28 35 chr11 3758562 3758703 -147024850 + (CATATA)n Simple_repeat Simple_repeat 6 145 0 200 244 73 49 chr11 3758825 3758907 -147024646 + MIR SINE MIR 95 178 -84 291 304 13 0 chr11 3759118 3759197 -147024356 + L2 LINE L2 3187 3266 -6 1493 109 100 9 chr11 3760232 3760461 -147023092 + L1PB1 LINE L1 5900 6149 -2 801 168 35 0 chr11 3760611 3760754 -147022799 + MER57A LTR ERV1 1 148 -255 9366 24 0 0 chr11 3761109 3762190 -147021363 - L1P LINE L1 -867 5279 4199 3557 21 2 0 chr11 3762185 3762756 -147020797 + L1PA2 LINE L1 5406 6155 0 * 1218 202 32 4 chr11 3763001 3763248 -147020305 + MER57A LTR ERV1 150 403 0 1384 262 17 26 chr11 3763248 3763595 -147019958 + MER57A-int LTR ERV1 1 344 -7193 1114 157 6 0 chr11 3763596 3763768 -147019785 - LTR9 LTR ERV1 0 612 440 9908 104 24 11 chr11 3763790 3764580 -147018973 - HUERS-P3b LTR ERV1 -1733 5685 4867 2130 130 3 10 chr11 3764580 3764887 -147018666 - AluSx SINE Alu -7 305 1 9908 104 24 11 chr11 3764887 3765578 -147017975 - HUERS-P3b LTR ERV1 -2551 4867 4186 3318 78 32 34 chr11 3765576 3766048 -147017505 - HUERS-P3b LTR ERV1 -3875 3543 3073 * 2534 177 30 2 chr11 3766048 3766477 -147017076 + LTR8 LTR ERV1 1 441 -250 1410 48 0 0 chr11 3766477 3766643 -147016910 - HUERS-P3b LTR ERV1 -4776 2642 2477 * 3594 121 0 4 chr11 3766640 3767135 -147016418 - HUERS-P3b LTR ERV1 -5394 2024 1532 3116 161 63 14 chr11 3767127 3767697 -147015856 - HUERS-P3b LTR ERV1 -7580 1339 742 * 895 186 5 69 chr11 3767731 3767919 -147015634 - HUERS-P3b LTR ERV1 -6885 533 358 2687 127 65 59 chr11 3767919 3768468 -147015085 - LTR9 LTR ERV1 -28 766 1 2178 164 36 68 chr11 3768474 3768975 -147014578 + LOR1-int LTR ERV1 348 832 -6705 514 225 14 21 chr11 3769092 3769234 -147014319 + LOR1-int LTR ERV1 851 991 -4132 876 236 69 29 chr11 3769234 3769480 -147014073 + MER34C LTR ERV1 158 413 -172 506 203 25 131 chr11 3769480 3769716 -147013837 + LOR1-int LTR ERV1 1834 2044 -4554 309 187 0 138 chr11 3769706 3769829 -147013724 + LOR1-int LTR ERV1 994 1099 -7021 * 303 190 0 147 chr11 3769730 3769846 -147013707 + LTR57-int LTR ERVL 1034 1132 -4211 * 5613 111 15 1 chr11 3769849 3771060 -147012493 - L1PA11 LINE L1 -150 6024 4801 5844 92 18 23 chr11 3771062 3771918 -147011635 + L1P LINE L1 1917 2767 -3379 3128 94 0 9 chr11 3771919 3772343 -147011210 + L1P LINE L1 3823 4242 -1904 225 0 0 0 chr11 3772380 3772405 -147011148 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 216 97 0 0 chr11 3772438 3772469 -147011084 + (A)n Simple_repeat Simple_repeat 1 31 0 8626 95 17 0 chr11 3772477 3774396 -147009157 + L1PA8 LINE L1 4233 6168 -4 526 200 20 10 chr11 3774396 3774489 -147009064 - L1MC/D LINE L1 -654 5588 5492 565 238 8 8 chr11 3774635 3774757 -147008796 + L2 LINE L2 3191 3312 -1 1608 274 89 21 chr11 3774763 3775654 -147007899 - L1MC/D LINE L1 -1052 5094 4144 24 0 0 0 chr11 3776341 3776365 -147007188 + AT_rich Low_complexity Low_complexity 1 24 0 470 348 41 88 chr11 3776694 3777456 -147006097 - L2 LINE L2 -340 2974 2249 257 306 184 10 chr11 3777660 3777948 -147005605 + L2 LINE L2 1732 2069 -1245 228 163 0 0 chr11 3779050 3779093 -147004460 + (TG)n Simple_repeat Simple_repeat 2 44 0 2054 130 0 3 chr11 3780049 3780356 -147003197 - AluSg SINE Alu -3 307 2 183 333 111 26 chr11 3780370 3780487 -147003066 - MER5B DNA MER1_type -45 133 7 1530 92 0 0 chr11 3783649 3783844 -146999709 + AluSc SINE Alu 106 300 -9 318 265 39 10 chr11 3783910 3784012 -146999541 - L1MEc LINE L1 -6135 261 157 248 310 28 14 chr11 3785608 3785750 -146997803 + (CTGGGG)n Simple_repeat Simple_repeat 3 146 0 547 298 104 26 chr11 3785995 3786511 -146997042 + L2 LINE L2 2684 3252 -61 183 213 64 163 chr11 3786626 3786767 -146996786 + L2 LINE L2 3018 3144 -128 228 260 52 0 chr11 3787772 3787849 -146995704 + MIR SINE MIR 118 198 -64 375 348 51 6 chr11 3788118 3788276 -146995277 + MIR SINE MIR 20 184 -78 240 345 73 18 chr11 3790680 3790845 -146992708 - L2 LINE L2 -375 2939 2766 763 275 37 20 chr11 3791055 3791299 -146992254 - MIR SINE MIR -13 249 2 1408 150 18 4 chr11 3792043 3792270 -146991283 + MER46A DNA MER2_type 1 230 -6 1592 235 28 43 chr11 3792526 3792986 -146990567 - LTR16A1 LTR ERVL -2 455 3 293 279 0 106 chr11 3795317 3795478 -146988075 - MIR SINE MIR -41 221 78 273 286 61 68 chr11 3795703 3795850 -146987703 - MER5B DNA MER1_type -30 148 3 202 255 28 166 chr11 3796245 3796390 -146987163 + L2 LINE L2 3123 3247 -25 667 287 135 45 chr11 3796395 3796750 -146986803 + MLT1J1 LTR MaLR 8 394 -52 964 348 91 55 chr11 3797039 3797677 -146985876 + L2 LINE L2 1556 2170 -1143 348 24 0 0 chr11 3797677 3797718 -146985835 + (CA)n Simple_repeat Simple_repeat 1 41 0 964 348 91 55 chr11 3797718 3798541 -146985012 + L2 LINE L2 2170 3062 -251 2175 117 0 3 chr11 3798586 3798894 -146984659 - AluSx SINE Alu -5 307 1 1675 246 96 25 chr11 3798947 3799519 -146984034 + MLT1E2 LTR MaLR 11 623 -3 213 329 13 40 chr11 3799567 3799643 -146983910 - L2 LINE L2 -58 3255 3182 494 213 89 78 chr11 3800013 3800437 -146983116 - LTR4 LTR ERV1 0 596 112 198 286 63 0 chr11 3801010 3801073 -146982480 - L2 LINE L2 -9 3263 3197 223 314 95 0 chr11 3801405 3801510 -146982043 + L2 LINE L2 2770 2884 -430 801 171 35 6 chr11 3803357 3803527 -146980026 - L1MA8 LINE L1 -2 6289 6115 198 0 0 0 chr11 3803529 3803551 -146980002 + (TCCC)n Simple_repeat Simple_repeat 3 24 0 228 182 0 0 chr11 3803557 3803601 -146979952 + CT-rich Low_complexity Low_complexity 2 45 0 1791 174 0 28 chr11 3803611 3803932 -146979621 - AluJo SINE Alu 0 312 1 184 250 16 31 chr11 3804160 3804224 -146979329 - MIR SINE MIR -40 222 160 2123 122 6 10 chr11 3804337 3804649 -146978904 + AluSp SINE Alu 1 311 -2 426 20 0 0 chr11 3804683 3804734 -146978819 + (TG)n Simple_repeat Simple_repeat 2 52 0 26 30 0 0 chr11 3805434 3805467 -146978086 + AT_rich Low_complexity Low_complexity 1 33 0 4923 148 52 9 chr11 3808219 3808618 -146974935 + L1MA9 LINE L1 5370 5751 -561 375 78 0 0 chr11 3808618 3808669 -146974884 + (CA)n Simple_repeat Simple_repeat 1 51 0 4923 148 52 9 chr11 3808669 3809118 -146974435 + L1MA9 LINE L1 5751 6254 -58 1392 165 0 0 chr11 3809120 3809344 -146974209 + L1PA16 LINE L1 5943 6166 0 421 171 0 0 chr11 3809346 3809422 -146974131 + L1MA9 LINE L1 6237 6312 0 894 205 72 0 chr11 3809431 3809626 -146973927 - L1MD1 LINE L1 -112 6524 6316 567 233 7 7 chr11 3809619 3809769 -146973784 - L1MD1 LINE L1 -873 5667 5518 * 3406 252 99 20 chr11 3809798 3810288 -146973265 - L1MD1 LINE L1 -1873 4667 4217 3507 153 53 14 chr11 3810288 3810324 -146973229 - L1MB2 LINE L1 -16 6155 6122 2391 86 7 3 chr11 3810324 3810628 -146972925 - AluSg SINE Alu -5 305 1 3507 153 53 14 chr11 3810628 3811218 -146972335 - L1MB2 LINE L1 -49 6122 5505 3406 252 99 20 chr11 3811218 3812135 -146971418 - L1MD1 LINE L1 -2323 4217 3149 2735 189 48 93 chr11 3812224 3812991 -146970562 - L1MD1 LINE L1 -5807 733 1 186 298 18 0 chr11 3813586 3813643 -146969910 + L2 LINE L2 3002 3059 -254 564 142 16 8 chr11 3814700 3814827 -146968726 + GA-rich Low_complexity Low_complexity 1 128 0 335 353 33 7 chr11 3814986 3815136 -146968417 - MIR SINE MIR 0 262 109 255 287 110 55 chr11 3815454 3815618 -146967935 - MIR3 SINE MIR -16 192 20 1192 174 0 94 chr11 3815745 3816033 -146967520 + L1MA10 LINE L1 6074 6334 0 264 260 144 33 chr11 3816383 3816516 -146967037 + MIR SINE MIR 18 168 -94 2379 75 0 28 chr11 3816516 3816834 -146966719 - AluSc SINE Alu 0 309 1 264 260 144 33 chr11 3816834 3816864 -146966689 + MIR SINE MIR 168 193 -69 489 302 53 11 chr11 3817254 3817443 -146966110 + LTR16C LTR ERVL 291 487 -4 2435 37 37 3 chr11 3817500 3817796 -146965757 + AluY SINE Alu 1 306 -5 293 246 84 53 chr11 3817827 3818007 -146965546 - LTR65 LTR ERV1 -6 663 292 2064 103 0 4 chr11 3818129 3818401 -146965152 + AluSq SINE Alu 1 271 -42 198 0 0 0 chr11 3818421 3818443 -146965110 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1720 203 28 52 chr11 3818617 3818657 -146964896 - MLT2D LTR ERVL 0 414 375 225 108 0 0 chr11 3818657 3818694 -146964859 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 1720 203 28 52 chr11 3818694 3819077 -146964476 - MLT2D LTR ERVL -39 375 1 569 167 11 0 chr11 3819543 3819633 -146963920 - AluJ/FLAM SINE Alu -220 92 2 289 134 176 17 chr11 3819635 3819754 -146963799 - Charlie5 DNA MER1_type -49 2563 2426 3170 119 33 6 chr11 3819758 3820247 -146963306 - L1MB4 LINE L1 -1 6179 5678 2109 132 3 3 chr11 3820253 3820557 -146962996 - AluSx SINE Alu -8 304 1 217 278 69 0 chr11 3821329 3821401 -146962152 + L3 LINE CR1 1500 1576 -1 27 0 0 0 chr11 3821432 3821459 -146962094 + AT_rich Low_complexity Low_complexity 1 27 0 373 337 85 24 chr11 3821779 3822025 -146961528 + MIR SINE MIR 2 262 0 899 194 0 0 chr11 3822150 3822294 -146961259 - FRAM SINE Alu -27 149 6 2234 99 0 7 chr11 3822331 3822625 -146960928 + AluSc SINE Alu 1 292 -17 197 333 108 17 chr11 3824457 3824577 -146958976 - L2 LINE L2 -197 3075 2945 239 307 86 64 chr11 3826827 3826967 -146956586 - MIR SINE MIR -83 179 37 345 272 53 26 chr11 3827322 3827436 -146956117 - L2 LINE L2 0 3272 3156 205 269 87 91 chr11 3828867 3829109 -146954444 - L2 LINE L2 -1 3271 3031 2038 295 83 39 chr11 3829307 3830466 -146953087 - L2 LINE L2 -33 3280 2071 22 0 0 0 chr11 3831158 3831180 -146952373 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr11 3831221 3831254 -146952299 + AT_rich Low_complexity Low_complexity 1 33 0 192 200 44 0 chr11 3831254 3831356 -146952197 + (TA)n Simple_repeat Simple_repeat 1 141 0 593 285 98 38 chr11 3831365 3831600 -146951953 + MIR SINE MIR 2 250 -12 286 339 36 55 chr11 3831791 3832028 -146951525 + MIR3 SINE MIR 38 208 0 1084 136 5 0 chr11 3834322 3834513 -146949040 + L1MA6 LINE L1 6107 6298 -2 2450 65 0 3 chr11 3834701 3835008 -146948545 + AluY SINE Alu 1 306 -5 303 299 23 0 chr11 3835750 3835837 -146947716 + L1MC4 LINE L1 6615 6703 -1339 225 0 0 0 chr11 3835837 3835862 -146947691 + (CA)n Simple_repeat Simple_repeat 2 26 0 252 347 89 45 chr11 3836846 3837226 -146946327 + L2 LINE L2 1845 2241 -1073 207 240 0 20 chr11 3838149 3838199 -146945354 + MIR SINE MIR 42 90 -172 485 342 27 46 chr11 3838232 3838495 -146945058 - MIR SINE MIR -3 259 2 251 224 0 0 chr11 3838502 3838551 -146945002 + MIR SINE MIR 96 144 -118 193 282 0 64 chr11 3838773 3838851 -146944702 - L3b LINE CR1 -143 1440 1368 841 154 0 34 chr11 3839239 3839414 -146944139 - L1MB8 LINE L1 -3 6175 6007 636 335 33 5 chr11 3840186 3840401 -146943152 + L2 LINE L2 2451 2671 -643 1792 191 82 14 chr11 3840533 3840947 -146942606 + MLT1D LTR MaLR 1 442 -63 244 286 26 13 chr11 3841007 3841084 -146942469 - MIR SINE MIR -150 112 35 322 292 131 13 chr11 3841973 3842209 -146941344 + L1ME LINE L1 5561 5824 -297 964 200 117 38 chr11 3842441 3842787 -146940766 + MSTC LTR MaLR 1 428 0 271 411 6 13 chr11 3843097 3843255 -146940298 - L2 LINE L2 0 3272 3116 268 270 135 0 chr11 3843309 3843383 -146940170 + MER5A DNA MER1_type 26 109 -80 34 24 0 0 chr11 3843781 3843822 -146939731 + AT_rich Low_complexity Low_complexity 1 41 0 204 347 0 11 chr11 3843882 3843977 -146939576 - L2 LINE L2 -319 2953 2860 202 209 30 15 chr11 3844188 3844255 -146939298 + (TAA)n Simple_repeat Simple_repeat 2 69 0 308 291 163 20 chr11 3844269 3844465 -146939088 - MIR SINE MIR -2 260 37 252 366 27 9 chr11 3846566 3846678 -146936875 + MIR SINE MIR 22 135 -73 1724 100 58 4 chr11 3846969 3847209 -146936344 + AluSc SINE Alu 1 253 -56 180 0 0 0 chr11 3847234 3847254 -146936299 + (TGG)n Simple_repeat Simple_repeat 2 21 0 1839 134 3 58 chr11 3847556 3847869 -146935684 + AluJb SINE Alu 17 312 0 2277 174 76 8 chr11 3847884 3848719 -146934834 - L1MB1 LINE L1 -13 6155 5226 191 380 28 28 chr11 3849142 3849284 -146934269 + L2 LINE L2 2031 2172 -1142 215 241 0 0 chr11 3950532 3950586 -146832967 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 412 317 91 4 chr11 3950993 3951236 -146832317 - L1ME LINE L1 -437 5725 5462 28 29 0 0 chr11 3951339 3951374 -146832179 + AT_rich Low_complexity Low_complexity 1 35 0 380 83 33 0 chr11 3952611 3952671 -146830882 + (TTCTC)n Simple_repeat Simple_repeat 4 65 0 270 0 0 0 chr11 3952832 3952862 -146830691 + (T)n Simple_repeat Simple_repeat 1 30 0 932 313 14 11 chr11 3953235 3953869 -146829684 - L1MC/D LINE L1 -769 5590 4955 393 296 14 10 chr11 3954723 3954916 -146828637 + HERVK LTR ERVK 3094 3748 -3495 230 274 0 0 chr11 3955140 3955202 -146828351 + (CAGG)n Simple_repeat Simple_repeat 2 63 0 250 250 95 17 chr11 3955207 3955323 -146828230 + FRAM SINE Alu 42 166 0 2193 267 31 20 chr11 3955342 3956402 -146827151 + L1PA16 LINE L1 4861 5930 -236 486 210 115 25 chr11 3958129 3958316 -146825237 + AluJo SINE Alu 118 318 0 25 31 0 0 chr11 3958332 3958364 -146825189 + AT_rich Low_complexity Low_complexity 1 32 0 206 186 23 0 chr11 3958439 3958482 -146825071 + A-rich Low_complexity Low_complexity 6 49 0 657 0 0 0 chr11 3958707 3958780 -146824773 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 307 187 22 22 chr11 3959388 3959479 -146824074 + (TCTG)n Simple_repeat Simple_repeat 1 91 0 246 155 35 35 chr11 3959827 3959885 -146823668 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 1063 289 67 56 chr11 3963605 3964672 -146818881 + HERVK LTR ERVK 2427 3397 -2548 578 253 84 103 chr11 3965211 3966134 -146817419 + HERVK LTR ERVK 4261 4998 -947 451 196 87 64 chr11 3968178 3968351 -146815202 + FRAM SINE Alu 1 176 0 25 31 0 0 chr11 3968521 3968553 -146815000 + AT_rich Low_complexity Low_complexity 1 32 0 4901 273 22 8 chr11 3972001 3973623 -146809930 + L1 LINE L1 2624 4268 -1878 222 37 0 0 chr11 3974022 3974049 -146809504 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 400 177 131 54 chr11 3974669 3974799 -146808754 + FRAM SINE Alu 37 176 0 241 220 0 17 chr11 3975559 3975618 -146807935 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 33 25 0 0 chr11 3975704 3975744 -146807809 + AT_rich Low_complexity Low_complexity 1 40 0 239 220 0 17 chr11 3976043 3976102 -146807451 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 281 106 21 21 chr11 3978635 3978682 -146804871 + AluSp SINE Alu 136 182 -121 275 284 34 0 chr11 3979309 3979397 -146804156 - L1MA5 LINE L1 -369 5931 5841 414 0 0 0 chr11 3979841 3979887 -146803666 + (GGA)n Simple_repeat Simple_repeat 3 48 0 312 27 0 0 chr11 3981034 3981071 -146802482 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 245 281 34 11 chr11 3981089 3981178 -146802375 + L1MA5 LINE L1 5841 5931 -369 281 106 21 21 chr11 3981813 3981860 -146801693 - AluSp SINE Alu -121 182 136 327 227 30 68 chr11 3982931 3983063 -146800490 + HERVK LTR ERVK 2515 2641 -3275 23 0 0 0 chr11 3983079 3983102 -146800451 + AT_rich Low_complexity Low_complexity 1 23 0 409 254 38 48 chr11 3983124 3983375 -146800178 + HERVK LTR ERVK 2976 3835 -3408 22 35 0 0 chr11 3983574 3983603 -146799950 + AT_rich Low_complexity Low_complexity 1 29 0 1363 320 14 15 chr11 3983875 3985065 -146798488 - L1MA5A LINE L1 -366 5931 4743 218 254 0 0 chr11 3985219 3985274 -146798279 + T-rich Low_complexity Low_complexity 4 58 0 6130 267 5 5 chr11 3985939 3988467 -146795086 - L1MA9 LINE L1 -381 5931 3402 342 153 0 0 chr11 3991561 3991620 -146791933 + (TA)n Simple_repeat Simple_repeat 1 59 0 240 221 0 26 chr11 3992776 3992853 -146790700 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 183 80 0 0 chr11 3993082 3993107 -146790446 + (T)n Simple_repeat Simple_repeat 1 25 0 204 40 0 0 chr11 3993789 3993814 -146789739 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 282 192 29 29 chr11 3993927 3994031 -146789522 - L1P LINE L1 -2347 3799 3696 524 293 45 28 chr11 3995059 3995530 -146788023 + L1 LINE L1 3108 3586 -2560 225 209 15 0 chr11 3995770 3995837 -146787716 - MLT2A1 LTR ERVL 0 444 377 1419 300 34 60 chr11 3996387 3997612 -146785941 + L1 LINE L1 3856 5048 -1098 201 39 0 0 chr11 3998053 3998079 -146785474 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 284 204 116 14 chr11 3999054 3999192 -146784361 + AluS SINE Alu 3 95 -208 429 176 65 131 chr11 3999283 3999436 -146784117 + FLAM_C SINE Alu 1 143 0 1146 88 0 0 chr11 4004388 4004548 -146779005 + (TTCTC)n Simple_repeat Simple_repeat 4 163 0 295 228 109 0 chr11 4004587 4004679 -146778874 - FLAM_C SINE Alu -27 106 5 28 29 0 0 chr11 4004899 4004934 -146778619 + AT_rich Low_complexity Low_complexity 1 35 0 190 333 0 0 chr11 4005017 4005077 -146778476 - MIR SINE MIR -197 65 6 679 320 16 16 chr11 4005100 4005540 -146778013 - L1 LINE L1 -825 5321 4882 36 23 0 0 chr11 4006519 4006562 -146776991 + AT_rich Low_complexity Low_complexity 1 43 0 286 260 73 57 chr11 4008599 4008776 -146774777 - AluJo SINE Alu 0 302 123 323 259 95 20 chr11 4009247 4009426 -146774127 + AluSq/x SINE Alu 2 113 -189 22 80 0 0 chr11 4011216 4011266 -146772287 + AT_rich Low_complexity Low_complexity 1 50 0 243 0 0 0 chr11 4011781 4011808 -146771745 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 195 42 0 0 chr11 4011819 4011843 -146771710 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 333 211 105 11 chr11 4011893 4011988 -146771565 - AluSq/x SINE Alu -197 105 2 21 0 0 0 chr11 4012331 4012352 -146771201 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 4012505 4012546 -146771007 + AT_rich Low_complexity Low_complexity 1 41 0 501 319 51 24 chr11 4013607 4014090 -146769463 - L1M4 LINE L1 -959 5187 4719 336 24 0 0 chr11 4014090 4014131 -146769422 + (TTG)n Simple_repeat Simple_repeat 2 42 0 501 319 51 24 chr11 4014131 4014153 -146769400 - L1M4 LINE L1 -1427 4719 4699 189 0 0 0 chr11 4014153 4014174 -146769379 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 501 319 51 24 chr11 4014174 4014287 -146769266 - L1M4 LINE L1 -1447 4699 4552 23 33 0 0 chr11 4016152 4016182 -146767371 + AT_rich Low_complexity Low_complexity 1 30 0 1939 254 25 28 chr11 4016849 4017709 -146765844 - L1MA4 LINE L1 -375 5925 5066 2819 262 10 6 chr11 4017719 4018608 -146764945 + L1 LINE L1 3987 4879 -1267 823 308 42 35 chr11 4019360 4020140 -146763413 - L1M4 LINE L1 -960 5186 4395 405 0 0 0 chr11 4020140 4020185 -146763368 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 823 308 42 35 chr11 4020185 4020379 -146763174 - L1M4 LINE L1 -1751 4395 4204 333 0 0 0 chr11 4020479 4020516 -146763037 + (T)n Simple_repeat Simple_repeat 1 37 0 189 107 0 0 chr11 4020620 4020648 -146762905 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 188 317 0 0 chr11 4020741 4020801 -146762752 - MIR SINE MIR -197 65 6 643 221 14 27 chr11 4020854 4021059 -146762494 - L1MA7 LINE L1 -324 5976 5769 26 30 0 0 chr11 4021059 4021092 -146762461 + AT_rich Low_complexity Low_complexity 1 33 0 240 203 0 17 chr11 4021178 4021237 -146762316 - tRNA-Lys-AAA tRNA tRNA -13 63 6 203 59 0 29 chr11 4022272 4022306 -146761247 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr11 4023113 4023134 -146760419 + AT_rich Low_complexity Low_complexity 1 21 0 572 80 0 11 chr11 4024453 4024541 -146759012 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 254 295 95 0 chr11 4025262 4025357 -146758196 + FLAM_A SINE Alu 2 105 -28 788 88 7 0 chr11 4025437 4025573 -146757980 + (CA)n Simple_repeat Simple_repeat 2 138 0 27 49 0 0 chr11 4026768 4026809 -146756744 + AT_rich Low_complexity Low_complexity 1 41 0 1125 226 4 0 chr11 4027395 4027661 -146755892 - L1MA7 LINE L1 -523 5657 5391 27 0 0 0 chr11 4028235 4028262 -146755291 + AT_rich Low_complexity Low_complexity 1 27 0 252 131 0 66 chr11 4028786 4028847 -146754706 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 416 184 125 53 chr11 4028998 4029150 -146754403 + FRAM SINE Alu 1 162 -14 296 231 0 0 chr11 4029233 4029298 -146754255 - tRNA-Ala-GCG tRNA tRNA -10 65 1 202 206 15 44 chr11 4029335 4029403 -146754150 + MIR3 SINE MIR 1 66 -142 243 224 0 0 chr11 4029647 4029723 -146753830 + CT-rich Low_complexity Low_complexity 2 77 0 207 0 0 0 chr11 4031565 4031588 -146751965 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 552 249 10 24 chr11 4032589 4032798 -146750755 + L1 LINE L1 2155 2360 -3786 771 174 0 0 chr11 4032915 4033059 -146750494 + G-rich Low_complexity Low_complexity 4 147 0 599 175 8 0 chr11 4033044 4033164 -146750389 + GA-rich Low_complexity Low_complexity 1 121 0 * 405 201 85 0 chr11 4033547 4033650 -146749903 + AluSg SINE Alu 1 103 -207 23 0 0 0 chr11 4035245 4035268 -146748285 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr11 4035694 4035719 -146747834 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 239 120 0 40 chr11 4036534 4036584 -146746969 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 668 174 90 30 chr11 4038508 4038675 -146744878 - FRAM SINE Alu 0 176 1 543 183 136 41 chr11 4040569 4040738 -146742815 + AluJo SINE Alu 120 304 -8 225 0 0 0 chr11 4043310 4043335 -146740218 + (A)n Simple_repeat Simple_repeat 1 25 0 260 200 142 58 chr11 4043356 4043476 -146740077 + FRAM SINE Alu 37 166 0 270 116 0 0 chr11 4043651 4043694 -146739859 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 525 215 92 25 chr11 4046655 4046882 -146736671 + FRAM SINE Alu 2 239 0 600 53 0 0 chr11 4046882 4046958 -146736595 + (GGA)n Simple_repeat Simple_repeat 3 78 0 861 120 0 0 chr11 4048338 4048471 -146735082 + (GGAA)n Simple_repeat Simple_repeat 1 133 0 22 0 0 0 chr11 4048485 4048507 -146735046 + AT_rich Low_complexity Low_complexity 1 22 0 257 292 81 19 chr11 4050157 4050318 -146733235 - Tigger1 DNA MER2_type -288 2130 1960 205 217 50 50 chr11 4051684 4051744 -146731809 + MIR SINE MIR 6 65 -197 26 0 0 0 chr11 4051827 4051853 -146731700 + AT_rich Low_complexity Low_complexity 1 26 0 458 215 133 19 chr11 4054325 4054483 -146729070 + FRAM SINE Alu 1 176 0 546 133 0 0 chr11 4054485 4054575 -146728978 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 488 202 115 66 chr11 4056815 4056998 -146726555 + AluJo SINE Alu 120 311 -1 215 214 0 0 chr11 4058201 4058243 -146725310 + GA-rich Low_complexity Low_complexity 3 44 0 925 286 53 29 chr11 4060028 4060541 -146723012 + HERVK14C LTR ERVK 2647 3171 -2774 366 268 9 23 chr11 4060731 4060906 -146722647 + HERVK14C LTR ERVK 3565 3833 -3410 21 0 0 0 chr11 4061134 4061155 -146722398 + AT_rich Low_complexity Low_complexity 1 21 0 302 296 15 15 chr11 4061269 4061401 -146722152 + HERVK14C LTR ERVK 4655 4786 -3330 267 311 0 0 chr11 4061800 4061874 -146721679 + L1 LINE L1 4072 4145 -2001 21 0 0 0 chr11 4062674 4062695 -146720858 + AT_rich Low_complexity Low_complexity 1 21 0 267 31 0 0 chr11 4064174 4064206 -146719347 + (T)n Simple_repeat Simple_repeat 1 32 0 183 327 55 45 chr11 4065880 4065990 -146717563 - L2 LINE L2 -6 3266 3156 260 231 29 29 chr11 4066484 4066588 -146716965 + L1P LINE L1 3696 3799 -2347 622 175 150 12 chr11 4068401 4068561 -146714992 - AluJo SINE Alu -10 302 121 225 154 0 0 chr11 4069079 4069118 -146714435 + (TA)n Simple_repeat Simple_repeat 2 40 0 256 208 0 26 chr11 4070648 4070725 -146712828 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 560 129 10 0 chr11 4071387 4071488 -146712065 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 207 0 0 0 chr11 4072465 4072488 -146711065 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 182 103 0 26 chr11 4072498 4072537 -146711016 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 481 204 114 60 chr11 4074176 4074343 -146709210 - FRAM SINE Alu -1 175 1 1303 260 64 23 chr11 4075961 4076396 -146707157 - HERVR LTR ERV1 -2180 5212 4760 521 273 139 85 chr11 4076588 4077505 -146706048 - HERVR LTR ERV1 -3326 5652 3252 260 316 0 0 chr11 4077508 4077587 -146705966 - HERVR LTR ERV1 -3796 3596 3518 266 231 22 55 chr11 4077751 4077842 -146705711 - HERVR LTR ERV1 -5870 1522 1435 430 311 0 0 chr11 4078894 4079071 -146704482 - HERVR LTR ERV1 -6787 605 429 279 123 25 19 chr11 4080741 4080814 -146702739 - MLT2A1 LTR ERVL 0 444 380 380 0 0 98 chr11 4081331 4081392 -146702161 + (T)n Simple_repeat Simple_repeat 1 55 0 574 242 81 6 chr11 4083263 4083424 -146700129 + FRAM SINE Alu 1 173 -3 505 153 127 60 chr11 4084694 4084867 -146698686 + AluJo SINE Alu 126 285 -27 184 42 0 0 chr11 4084700 4084902 -146698651 + (CAAAA)n Simple_repeat Simple_repeat 2 203 0 7413 280 11 13 chr11 4085821 4089293 -146694260 + L1MA4 LINE L1 1432 4905 -1241 2139 281 14 10 chr11 4089551 4090586 -146692967 + L1MA4 LINE L1 4892 5930 -370 21 36 0 0 chr11 4092891 4092919 -146690634 + AT_rich Low_complexity Low_complexity 1 28 0 372 203 14 142 chr11 4092919 4093067 -146690486 - FLAM_C SINE Alu -3 130 2 2068 115 3 10 chr11 4093561 4093849 -146689704 - AluSx SINE Alu -26 286 1 33 25 0 0 chr11 4093962 4094002 -146689551 + AT_rich Low_complexity Low_complexity 1 40 0 194 309 0 29 chr11 4094028 4094096 -146689457 - MIR3 SINE MIR -142 66 1 639 39 0 0 chr11 4094460 4094538 -146689015 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 8935 274 12 11 chr11 4095951 4100521 -146683032 + L1MA9 LINE L1 1991 6647 -381 231 308 0 0 chr11 4102837 4102902 -146680651 + C-rich Low_complexity Low_complexity 4 68 0 469 272 19 13 chr11 4103019 4103220 -146680333 - L1MA2 LINE L1 -221 5930 5713 401 250 1 15 chr11 4103105 4103251 -146680302 - L1ME2 LINE L1 -337 5825 5681 * 405 310 36 70 chr11 4103471 4103887 -146679666 - L1M2 LINE L1 -4630 2219 1818 409 179 105 11 chr11 4106240 4106335 -146677218 + AluSq/x SINE Alu 2 105 -208 276 30 0 0 chr11 4106382 4106415 -146677138 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 348 24 0 0 chr11 4106431 4106472 -146677081 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 297 0 0 0 chr11 4106733 4106766 -146676787 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1178 34 7 0 chr11 4106905 4107052 -146676501 + (TTTTC)n Simple_repeat Simple_repeat 2 149 0 23 33 0 0 chr11 4109386 4109416 -146674137 + AT_rich Low_complexity Low_complexity 1 30 0 500 139 146 49 chr11 4109955 4110099 -146673454 - FRAM SINE Alu -19 157 1 24 32 0 0 chr11 4110812 4110843 -146672710 + AT_rich Low_complexity Low_complexity 1 31 0 569 144 117 64 chr11 4111905 4112093 -146671460 - AluJo SINE Alu 0 312 115 427 127 60 217 chr11 4114690 4114876 -146668677 - FLAM_C SINE Alu 0 162 3 449 181 85 0 chr11 4116087 4116181 -146667372 - AluSg SINE Alu -207 103 2 26 64 0 0 chr11 4116697 4116744 -146666809 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr11 4118248 4118284 -146665269 + AT_rich Low_complexity Low_complexity 1 36 0 266 194 65 93 chr11 4120629 4120768 -146662785 - AluSp SINE Alu -168 135 1 197 160 0 40 chr11 4124796 4124846 -146658707 + (TATG)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr11 4125304 4125332 -146658221 + AT_rich Low_complexity Low_complexity 1 28 0 1386 184 115 46 chr11 4227222 4227952 -146555601 - L1ME2 LINE L1 -552 5610 4837 24 53 0 0 chr11 4228002 4228040 -146555513 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr11 4228102 4228123 -146555430 + AT_rich Low_complexity Low_complexity 1 21 0 579 252 26 26 chr11 4228468 4228623 -146554930 - MIR SINE MIR -102 160 6 1081 153 0 0 chr11 4231311 4231487 -146552066 - L1MA2 LINE L1 -40 6264 6089 294 311 97 104 chr11 4231730 4232019 -146551534 + L2 LINE L2 2980 3266 -6 1695 231 37 85 chr11 4232243 4232840 -146550713 - L1M1 LINE L1 -6990 575 8 332 346 29 10 chr11 4232948 4233205 -146550348 - L1ME LINE L1 -315 5806 5545 2334 100 3 3 chr11 4233219 4233530 -146550023 - AluY SINE Alu 0 311 1 43 56 0 0 chr11 4233599 4233670 -146549883 + AT_rich Low_complexity Low_complexity 1 71 0 21 82 0 0 chr11 4233853 4233902 -146549651 + AT_rich Low_complexity Low_complexity 1 49 0 333 294 56 21 chr11 4233910 4234053 -146549500 - L1ME LINE L1 -740 5444 5297 1166 246 14 14 chr11 4234064 4234349 -146549204 + AluJo SINE Alu 11 295 -17 452 139 13 0 chr11 4234351 4234430 -146549123 - MADE1 DNA Mariner 0 80 1 14295 149 36 7 chr11 4234673 4236974 -146546579 + L1MA1 LINE L1 609 3007 -4558 2137 116 0 0 chr11 4236974 4237258 -146546295 + AluSp SINE Alu 3 286 -27 14295 149 36 7 chr11 4237258 4237634 -146545919 + L1MA1 LINE L1 3007 3371 -4194 1778 156 184 11 chr11 4237634 4237999 -146545554 - MSTA LTR MaLR 0 428 1 6414 163 5 12 chr11 4237999 4239161 -146544392 - MSTA-int LTR MaLR 0 1580 427 6931 161 133 6 chr11 4239221 4242029 -146541524 + L1MA1 LINE L1 4534 7721 0 24 0 0 0 chr11 4242773 4242797 -146540756 + AT_rich Low_complexity Low_complexity 1 24 0 756 114 93 0 chr11 4242797 4242937 -146540616 - L1MA5A LINE L1 0 6297 6145 1606 113 4 4 chr11 4245167 4245432 -146538121 - L1MA4A LINE L1 -1 6302 6038 208 338 0 0 chr11 4245465 4245542 -146538011 + L2 LINE L2 2175 2251 -1063 21 0 0 0 chr11 4245792 4245813 -146537740 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr11 4246023 4246061 -146537492 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr11 4246213 4246251 -146537302 + AT_rich Low_complexity Low_complexity 1 38 0 902 263 121 52 chr11 4246759 4247818 -146535735 + L1MEc LINE L1 1737 2859 -3356 3905 167 27 36 chr11 4247887 4248715 -146534838 + L1MA9 LINE L1 5491 6310 -2 936 268 75 18 chr11 4248762 4249414 -146534139 + L1MEc LINE L1 3282 4034 -2181 37053 74 4 2 chr11 4249422 4254581 -146528972 + L1P LINE L1 11 5178 -968 21 0 0 0 chr11 4256531 4256552 -146527001 + AT_rich Low_complexity Low_complexity 1 21 0 2145 80 60 30 chr11 4256721 4257020 -146526533 + AluSx SINE Alu 1 308 -4 266 187 66 11 chr11 4257201 4257292 -146526261 + (TA)n Simple_repeat Simple_repeat 1 96 0 24 32 0 0 chr11 4257667 4257698 -146525855 + AT_rich Low_complexity Low_complexity 1 31 0 268 365 63 16 chr11 4257846 4258035 -146525518 - MIR3 SINE MIR -1 207 10 357 24 0 0 chr11 4258428 4258470 -146525083 + (TG)n Simple_repeat Simple_repeat 2 43 0 215 158 26 0 chr11 4258471 4258509 -146525044 + GA-rich Low_complexity Low_complexity 2 40 0 21 71 0 0 chr11 4258735 4258777 -146524776 + AT_rich Low_complexity Low_complexity 1 42 0 305 288 69 32 chr11 4258842 4259033 -146524520 - MIR3 SINE MIR -50 212 14 432 291 152 19 chr11 4259971 4260129 -146523424 - MER5A DNA MER1_type -1 188 10 330 286 70 60 chr11 4262051 4262250 -146521303 + MER58C DNA MER1_type 1 201 -14 300 377 41 8 chr11 4265201 4265323 -146518230 - L2 LINE L2 0 3272 3147 23 33 0 0 chr11 4266022 4266052 -146517501 + AT_rich Low_complexity Low_complexity 1 30 0 533 220 66 70 chr11 4266894 4267153 -146516400 + LTR41 LTR ERVL 25 282 -491 581 196 35 85 chr11 4267590 4267789 -146515764 + LTR41 LTR ERVL 578 766 -7 319 363 31 44 chr11 4269465 4269919 -146513634 + ERVL LTR ERVL 1728 2175 -3479 485 363 73 23 chr11 4269976 4270635 -146512918 + ERVL LTR ERVL 3496 4187 -1467 270 305 172 0 chr11 4272792 4272943 -146510610 - MIR SINE MIR 0 262 86 212 228 0 35 chr11 4273023 4273196 -146510357 + GA-rich Low_complexity Low_complexity 1 166 0 397 344 84 26 chr11 4273279 4273506 -146510047 - MIR SINE MIR -1 261 22 1916 167 6 6 chr11 4273795 4274106 -146509447 + AluJb SINE Alu 1 311 -1 196 349 63 68 chr11 4274165 4274802 -146508751 + L2 LINE L2 1993 2626 -688 21 0 0 0 chr11 4274829 4274850 -146508703 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr11 4275988 4276025 -146507528 + AT_rich Low_complexity Low_complexity 1 37 0 1580 213 10 19 chr11 4276061 4276371 -146507182 - AluJb SINE Alu -5 307 1 315 327 31 38 chr11 4276390 4276549 -146507004 - HAL1b LINE L1 -460 888 731 34 0 0 0 chr11 4276572 4276606 -146506947 + AT_rich Low_complexity Low_complexity 1 34 0 2124 78 0 25 chr11 4276697 4276978 -146506575 + AluY SINE Alu 35 308 -3 2232 202 47 2 chr11 4277174 4277703 -146505850 + L1 LINE L1 2500 3052 -3094 223 245 20 0 chr11 4277787 4277836 -146505717 - MER5A DNA MER1_type -83 106 57 4155 90 17 80 chr11 4278127 4278836 -146504717 + MER4A LTR ERV1 1 664 0 629 251 67 17 chr11 4279241 4279480 -146504073 - L1ME3 LINE L1 -329 5833 5583 525 297 0 47 chr11 4279488 4279744 -146503809 - L1ME3 LINE L1 -627 5537 5294 585 286 65 21 chr11 4279759 4280144 -146503409 - L1ME3 LINE L1 -895 5251 4850 775 130 7 43 chr11 4280147 4280305 -146503248 + FLAM_C SINE Alu 1 133 0 561 138 0 0 chr11 4280511 4280591 -146502962 + AluSq SINE Alu 143 222 -91 248 162 0 59 chr11 4280640 4280708 -146502845 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 863 187 35 111 chr11 4280721 4281319 -146502234 + MER4C LTR ERV1 5 455 -10 300 106 0 45 chr11 4281388 4281454 -146502099 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 252 333 0 0 chr11 4281582 4281663 -146501890 + L2 LINE L2 1199 1279 -2035 2082 140 6 17 chr11 4282125 4282474 -146501079 + L1PA15 LINE L1 5817 6161 -4 242 267 39 17 chr11 4285400 4285531 -146498022 + MIR SINE MIR 16 147 -62 1760 202 0 3 chr11 4285568 4285870 -146497683 + AluJo SINE Alu 1 301 -11 3516 57 0 2 chr11 4285906 4286344 -146497209 - L1PA6 LINE L1 -13 6141 5705 1543 64 0 0 chr11 4286344 4286546 -146497007 + L1PA6 LINE L1 5502 5703 -451 33 25 0 0 chr11 4286582 4286622 -146496931 + AT_rich Low_complexity Low_complexity 1 40 0 4188 54 0 0 chr11 4287010 4287567 -146495986 + L1P LINE L1 2211 2767 -3379 187 255 78 20 chr11 4288030 4288081 -146495472 - L2 LINE L2 -16 3297 3244 733 274 18 18 chr11 4288126 4288349 -146495204 + MER58A DNA MER1_type 1 223 -1 21 0 0 0 chr11 4288374 4288395 -146495158 + AT_rich Low_complexity Low_complexity 1 21 0 1889 162 7 3 chr11 4288687 4288856 -146494697 - AluSx SINE Alu -12 300 128 192 40 0 0 chr11 4288856 4288881 -146494672 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1889 162 7 3 chr11 4288881 4289008 -146494545 - AluSx SINE Alu -184 128 3 31 88 0 0 chr11 4290997 4291077 -146492476 + AT_rich Low_complexity Low_complexity 1 80 0 246 313 25 0 chr11 4291330 4291410 -146492143 - L2 LINE L2 -8 3305 3224 2242 144 47 43 chr11 4291643 4291836 -146491717 + MSTB LTR MaLR 1 192 -234 1907 119 7 7 chr11 4291836 4292156 -146491397 + AluSc SINE Alu 3 322 0 2242 144 47 43 chr11 4292156 4292383 -146491170 + MSTB LTR MaLR 192 424 -2 8219 179 13 55 chr11 4292385 4294101 -146489452 + MSTB-int LTR MaLR 1 1645 -6 2195 153 52 41 chr11 4294106 4294525 -146489028 + MSTB LTR MaLR 1 424 -2 25 0 0 0 chr11 4295954 4295979 -146487574 + AT_rich Low_complexity Low_complexity 1 25 0 279 282 70 49 chr11 4296479 4296621 -146486932 + L2 LINE L2 3169 3313 0 200 356 77 66 chr11 4297133 4297498 -146486055 - L2 LINE L2 -15 3257 2889 414 57 0 0 chr11 4297805 4297858 -146485695 + (TC)n Simple_repeat Simple_repeat 2 54 0 516 283 40 29 chr11 4301782 4301955 -146481598 - MIR SINE MIR -42 220 46 260 304 74 30 chr11 4302742 4302877 -146480676 + L2 LINE L2 3167 3307 -6 2131 93 0 30 chr11 4303568 4303870 -146479683 - AluSg SINE Alu -8 302 10 224 383 14 46 chr11 4303999 4304216 -146479337 + L2 LINE L2 2733 2942 -372 296 359 0 10 chr11 4307209 4307312 -146476241 + L2 LINE L2 1121 1222 -2092 26 0 0 0 chr11 4307314 4307340 -146476213 + AT_rich Low_complexity Low_complexity 1 26 0 233 164 0 18 chr11 4307728 4307783 -146475770 + CT-rich Low_complexity Low_complexity 1 54 0 221 167 0 0 chr11 4307787 4307829 -146475724 + (TAG)n Simple_repeat Simple_repeat 2 43 0 378 304 65 42 chr11 4308421 4308589 -146474964 + L1M4b LINE L1 1238 1409 -5450 5187 133 5 10 chr11 4308597 4309541 -146474012 + L1PA11 LINE L1 4501 5435 -739 2239 120 7 0 chr11 4309541 4309842 -146473711 - AluSg SINE Alu -7 303 1 5187 133 5 10 chr11 4309842 4310397 -146473156 + L1PA11 LINE L1 5435 5992 -182 9511 56 0 4 chr11 4310397 4312388 -146471165 + L1PA5 LINE L1 4166 6154 0 339 289 57 54 chr11 4312388 4312738 -146470815 + L1M4b LINE L1 2518 2868 -4270 1045 334 93 35 chr11 4312763 4313527 -146470026 - L2 LINE L2 -806 2508 1701 558 269 27 32 chr11 4314169 4314355 -146469198 + MIR SINE MIR 78 262 0 22 0 0 0 chr11 4315711 4315733 -146467820 + AT_rich Low_complexity Low_complexity 1 22 0 562 236 55 18 chr11 4315862 4316027 -146467526 - MIR SINE MIR -14 248 78 218 203 31 31 chr11 4316082 4316146 -146467407 + (CAGAGA)n Simple_repeat Simple_repeat 4 67 0 737 249 53 0 chr11 4316259 4316448 -146467105 + MER3 DNA MER1_type 9 207 -2 275 85 21 0 chr11 4316695 4316742 -146466811 + (TG)n Simple_repeat Simple_repeat 1 48 0 1662 230 38 38 chr11 4317486 4317990 -146465563 - MLT1D LTR MaLR -1 504 1 772 239 29 34 chr11 4319714 4319923 -146463630 + MER3 DNA MER1_type 1 208 -1 1185 221 46 57 chr11 4320038 4320405 -146463148 - L1ME1 LINE L1 -19 6147 5785 22 0 0 0 chr11 4320518 4320540 -146463013 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 4320574 4320595 -146462958 + AT_rich Low_complexity Low_complexity 1 21 0 218 301 88 44 chr11 4320717 4320830 -146462723 + L2 LINE L2 3195 3312 -1 2041 128 0 0 chr11 4321107 4321389 -146462164 + AluSg SINE Alu 1 282 -28 447 245 128 41 chr11 4321678 4321874 -146461679 + MIR SINE MIR 49 261 -1 225 341 101 8 chr11 4323823 4323952 -146459601 + MIR SINE MIR 26 166 -96 21 0 0 0 chr11 4325188 4325209 -146458344 + AT_rich Low_complexity Low_complexity 1 21 0 339 260 91 67 chr11 4326859 4327067 -146456486 + MER46C DNA MER2_type 1 213 -125 1501 167 70 56 chr11 4327478 4327820 -146455733 + MER7A DNA MER2_type 2 346 0 21 0 0 0 chr11 4328418 4328439 -146455114 + AT_rich Low_complexity Low_complexity 1 21 0 438 361 17 22 chr11 4328483 4328713 -146454840 + MIR SINE MIR 12 240 -22 189 380 67 36 chr11 4329970 4330165 -146453388 - L2 LINE L2 -33 3239 3039 1535 181 78 6 chr11 4331395 4331715 -146451838 + MER2 DNA MER2_type 2 344 0 423 0 0 0 chr11 4333209 4333256 -146450297 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1983 198 70 5 chr11 4333368 4333768 -146449785 - MSTB LTR MaLR 0 426 1 31 68 0 0 chr11 4335539 4335598 -146447955 + AT_rich Low_complexity Low_complexity 1 59 0 318 311 228 14 chr11 4335941 4336160 -146447393 + L2 LINE L2 2872 3137 -176 678 158 7 82 chr11 4336365 4336511 -146447042 + FLAM_C SINE Alu 6 140 -3 332 257 178 0 chr11 4336748 4336849 -146446704 - MIR SINE MIR -40 222 104 21 0 0 0 chr11 4336946 4336967 -146446586 + AT_rich Low_complexity Low_complexity 1 21 0 1373 175 51 25 chr11 4338195 4338469 -146445084 + AluJo SINE Alu 1 281 -31 691 280 86 76 chr11 4339343 4339653 -146443900 - L1MEc LINE L1 -3586 2629 2323 291 28 0 0 chr11 4339653 4339689 -146443864 + (CA)n Simple_repeat Simple_repeat 2 37 0 2178 118 3 0 chr11 4339694 4339991 -146443562 - AluSc SINE Alu -11 298 1 691 280 86 76 chr11 4339991 4340974 -146442579 - L1MEc LINE L1 -3895 2320 1366 315 0 0 0 chr11 4341381 4341416 -146442137 + (TG)n Simple_repeat Simple_repeat 2 36 0 527 361 51 16 chr11 4341428 4341683 -146441870 - LTR16A LTR ERVL -84 366 103 327 338 20 35 chr11 4342127 4342325 -146441228 - ERVL LTR ERVL -609 5155 4961 37 0 0 0 chr11 4342325 4342362 -146441191 + AT_rich Low_complexity Low_complexity 1 37 0 520 405 57 17 chr11 4342768 4343629 -146439924 - ERVL LTR ERVL -1195 4459 3565 2357 73 0 7 chr11 4343689 4343989 -146439564 - AluY SINE Alu -13 298 1 369 304 22 44 chr11 4344437 4344618 -146438935 - ERVL LTR ERVL -2429 2567 2391 1258 142 28 5 chr11 4344874 4345086 -146438467 - L1PA16 LINE L1 -234 5932 5716 236 121 61 15 chr11 4345085 4345151 -146438402 - L1M LINE L1 -2455 5330 5262 * 33 56 0 0 chr11 4345439 4345493 -146438060 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr11 4345638 4345663 -146437890 + AT_rich Low_complexity Low_complexity 1 25 0 369 273 117 0 chr11 4346719 4346847 -146436706 - MIR SINE MIR -80 182 40 272 319 122 30 chr11 4346917 4347212 -146436341 + L2 LINE L2 1979 2300 -1014 189 415 12 0 chr11 4347345 4347427 -146436126 - L2 LINE L2 -3 3269 3187 36 40 0 0 chr11 4348164 4348214 -146435339 + AT_rich Low_complexity Low_complexity 1 50 0 245 211 141 0 chr11 4349020 4349091 -146434462 + MIR SINE MIR 124 204 -58 2211 103 3 19 chr11 4349338 4349648 -146433905 + AluSq SINE Alu 1 305 -8 229 303 0 13 chr11 4349674 4349750 -146433803 - L1ME LINE L1 -466 5655 5581 192 282 12 82 chr11 4351057 4351142 -146432411 - L2 LINE L2 -213 3059 2981 1626 272 22 20 chr11 4352512 4353016 -146430537 - MLT1D LTR MaLR 0 505 1 273 215 78 112 chr11 4353125 4353330 -146430223 + L2 LINE L2 3105 3302 -11 228 241 138 0 chr11 4353904 4353962 -146429591 + L2 LINE L2 3145 3210 -62 790 297 114 25 chr11 4354067 4354471 -146429082 + L2 LINE L2 2862 3301 -12 287 313 73 13 chr11 4354684 4354834 -146428719 - MIR SINE MIR -34 228 70 2466 183 122 7 chr11 4355160 4355728 -146427825 + LTR24C LTR ERV1 1 633 -2 226 298 37 106 chr11 4356275 4356463 -146427090 + L2 LINE L2 2898 3072 -200 781 291 65 58 chr11 4356632 4357061 -146426492 - MLT1G1 LTR MaLR -163 432 1 1022 86 50 0 chr11 4358568 4358707 -146424846 + AluY SINE Alu 1 146 -165 401 228 134 13 chr11 4358725 4358874 -146424679 + LTR33 LTR ERVL 205 371 -150 268 283 11 0 chr11 4358991 4359083 -146424470 + T-rich Low_complexity Low_complexity 4 96 0 352 298 50 16 chr11 4359584 4359705 -146423848 + L2 LINE L2 3148 3272 0 236 376 30 0 chr11 4359744 4359877 -146423676 - MIR SINE MIR -74 188 52 443 314 15 7 chr11 4360511 4360648 -146422905 - MIR SINE MIR -102 160 23 309 89 0 0 chr11 4363783 4363828 -146419725 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 23 33 0 0 chr11 4364219 4364249 -146419304 + AT_rich Low_complexity Low_complexity 1 30 0 1674 145 25 7 chr11 4364266 4364549 -146419004 - L1PB4 LINE L1 -7 6149 5862 190 358 119 50 chr11 4366582 4366800 -146416753 + MIR SINE MIR 20 252 -10 234 0 0 0 chr11 4368089 4368115 -146415438 + (A)n Simple_repeat Simple_repeat 1 26 0 348 265 122 0 chr11 4369374 4369472 -146414081 + MER81 DNA DNA 5 114 0 613 259 29 0 chr11 4369486 4369625 -146413928 + MLT1G1 LTR MaLR 2 144 -451 285 189 0 0 chr11 4369644 4369697 -146413856 - L1MA6 LINE L1 -140 6160 6108 487 184 0 0 chr11 4369702 4369800 -146413753 + L1MA6 LINE L1 6203 6300 0 913 269 170 14 chr11 4369826 4370261 -146413292 - MLT1D LTR MaLR 0 505 3 943 284 105 20 chr11 4370298 4370603 -146412950 + MLT1G1 LTR MaLR 223 501 -94 2092 122 30 43 chr11 4370603 4370971 -146412582 - THE1B LTR MaLR -1 363 1 11325 106 6 1 chr11 4370971 4372543 -146411010 - THE1B-int LTR MaLR 0 1580 1 2114 126 24 48 chr11 4372543 4372916 -146410637 - THE1B LTR MaLR 0 364 1 943 284 105 20 chr11 4372916 4372950 -146410603 + MLT1G1 LTR MaLR 500 593 -2 25 31 0 0 chr11 4372953 4372985 -146410568 + AT_rich Low_complexity Low_complexity 1 32 0 1078 234 97 9 chr11 4373015 4373365 -146410188 - L1ME1 LINE L1 -5 6161 5781 310 271 0 0 chr11 4373367 4373474 -146410079 + (TA)n Simple_repeat Simple_repeat 1 107 0 721 211 108 18 chr11 4373495 4373718 -146409835 - L1ME1 LINE L1 -422 5744 5502 1322 302 65 20 chr11 4373766 4374454 -146409099 + L1ME3A LINE L1 5292 6010 -160 1104 283 164 50 chr11 4374633 4375953 -146407600 + L1ME3A LINE L1 3475 4944 -1202 1837 270 65 42 chr11 4375991 4376828 -146406725 + L1ME3A LINE L1 5306 6161 -9 184 400 0 0 chr11 4376950 4377030 -146406523 + MIR SINE MIR 48 127 -135 301 320 33 33 chr11 4377111 4377261 -146406292 - MIR SINE MIR -95 167 18 4214 173 9 9 chr11 4377355 4377370 -146406183 + L1PB4 LINE L1 5394 5408 -748 1800 179 124 16 chr11 4377370 4377756 -146405797 - MSTA LTR MaLR 0 428 1 4214 173 9 9 chr11 4377756 4378499 -146405054 + L1PB4 LINE L1 5407 6152 -4 207 100 0 0 chr11 4378506 4378536 -146405017 + (TC)n Simple_repeat Simple_repeat 2 31 0 1334 135 0 34 chr11 4378536 4378773 -146404780 + MSTB1 LTR MaLR 204 432 0 6717 132 17 2 chr11 4378822 4380669 -146402884 + L1PA10 LINE L1 4304 6164 -4 979 265 177 38 chr11 4380726 4381179 -146402374 - MLT1E LTR MaLR -77 516 1 231 328 138 45 chr11 4383015 4383412 -146400141 + L2 LINE L2 1551 1984 -1330 2314 84 7 0 chr11 4383437 4383735 -146399818 - AluSc SINE Alu -9 300 1 490 347 44 28 chr11 4385555 4385803 -146397750 - MIR SINE MIR -6 256 5 4100 77 12 2 chr11 4386386 4386973 -146396580 - L1P LINE L1 -2286 3860 3268 218 200 0 0 chr11 4388968 4389013 -146394540 + A-rich Low_complexity Low_complexity 2 46 0 292 375 86 36 chr11 4389333 4389637 -146393916 - L3 LINE CR1 -5 1572 1254 264 364 40 7 chr11 4389629 4389780 -146393773 + L2 LINE L2 3149 3304 -9 * 31 0 0 0 chr11 4390576 4390607 -146392946 + AT_rich Low_complexity Low_complexity 1 31 0 277 274 48 25 chr11 4391458 4391661 -146391892 - L1M LINE L1 -766 5380 5188 426 267 185 20 chr11 4392002 4392148 -146391405 - MER5A DNA MER1_type -2 187 18 2308 89 0 22 chr11 4392322 4392637 -146390916 + AluSc SINE Alu 2 309 0 194 91 30 0 chr11 4392811 4392844 -146390709 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 308 337 56 59 chr11 4392888 4393194 -146390359 - L1M4 LINE L1 -1973 4173 3869 968 201 23 27 chr11 4394022 4394241 -146389312 - MER20 DNA MER1_type -1 218 1 287 281 61 35 chr11 4394805 4394919 -146388634 + MIR SINE MIR 33 149 -113 199 319 85 32 chr11 4395465 4395559 -146387994 - L2 LINE L2 0 3272 3174 411 198 0 23 chr11 4396139 4396225 -146387328 + L1PA16 LINE L1 5978 6061 -105 21 0 0 0 chr11 4398866 4398887 -146384666 + AT_rich Low_complexity Low_complexity 1 21 0 246 371 29 0 chr11 4398894 4398999 -146384554 - MIR SINE MIR -108 154 47 243 176 139 46 chr11 4399381 4399489 -146384064 + LTR38B LTR ERV1 1 118 -492 1803 111 19 8 chr11 4399602 4399863 -146383690 - AluSx SINE Alu -9 303 40 300 290 41 89 chr11 4400003 4400324 -146383229 + LTR38 LTR ERV1 291 556 0 317 89 40 40 chr11 4400445 4400546 -146383007 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 2560 46 0 0 chr11 4400879 4401184 -146382369 + AluY SINE Alu 1 305 -6 6806 165 29 26 chr11 4402525 4403769 -146379784 - Ricksha_b DNA DNA -7 1247 1 210 71 95 0 chr11 4403945 4403987 -146379566 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3860 83 2 0 chr11 4404992 4405524 -146378029 + L1P LINE L1 4329 4861 -1285 273 192 0 0 chr11 4405543 4405595 -146377958 + LTR49-int LTR ERV1 4994 5045 -1286 3540 126 16 3 chr11 4405595 4406416 -146377137 - L1PA11 LINE L1 -579 5595 4769 4093 118 2 5 chr11 4406416 4407011 -146376542 + L1PA11 LINE L1 5565 6163 -11 976 285 30 65 chr11 4407018 4407512 -146376041 + LTR49-int LTR ERV1 3764 4240 -696 1358 218 38 50 chr11 4407525 4407943 -146375610 + LTR37A LTR ERV1 4 416 -10 1393 214 13 105 chr11 4408011 4408535 -146375018 - MER31A LTR ERV1 -9 476 1 1355 210 68 87 chr11 4408658 4409129 -146374424 - MER31A-int LTR ERV1 -100 4836 4375 3314 205 53 13 chr11 4409205 4409999 -146373554 - MER31A-int LTR ERV1 -727 4209 3384 1333 226 57 17 chr11 4410000 4410402 -146373151 - MER31A-int LTR ERV1 -1763 3173 2756 3123 215 56 77 chr11 4410500 4412469 -146371084 - MER31A-int LTR ERV1 -2372 2564 654 314 316 57 60 chr11 4412472 4412807 -146370746 - L1M2b LINE L1 -5414 1795 1462 661 321 5 5 chr11 4412861 4413057 -146370496 - MER31A-int LTR ERV1 -4524 412 217 405 170 85 32 chr11 4413064 4413158 -146370395 - MER31A-int LTR ERV1 -4670 266 168 610 209 102 53 chr11 4413346 4413566 -146369987 - MER31A LTR ERV1 -2 483 253 1922 180 43 38 chr11 4413566 4413988 -146369565 - MSTB1 LTR MaLR 0 432 9 687 237 73 78 chr11 4413994 4414239 -146369314 - MER31B LTR ERV1 -222 244 1 22 0 0 0 chr11 4414353 4414375 -146369178 + AT_rich Low_complexity Low_complexity 1 22 0 2916 66 5 0 chr11 4416665 4417045 -146366508 + L1PA10 LINE L1 5776 6157 -11 888 339 37 15 chr11 4419094 4419495 -146364058 - LTR16A LTR ERVL 0 450 41 1852 164 24 34 chr11 4419816 4420195 -146363358 + THE1C LTR MaLR 1 375 0 861 324 39 6 chr11 4420719 4421055 -146362498 + HERV16 LTR ERVL 736 1082 -3914 325 314 80 5 chr11 4421056 4421244 -146362309 + HERV16 LTR ERVL 1602 1803 -3193 409 319 86 36 chr11 4421289 4421901 -146361652 + HERV16 LTR ERVL 1906 2677 -2319 23 54 0 0 chr11 4422420 4422457 -146361096 + AT_rich Low_complexity Low_complexity 1 37 0 435 287 8 59 chr11 4422910 4423147 -146360406 + HAL1 LINE L1 2277 2501 -6 4793 149 107 70 chr11 4423182 4424366 -146359187 - Tigger3b DNA MER2_type -2 1229 2 241 316 13 13 chr11 4424407 4424486 -146359067 + MIR SINE MIR 63 141 -121 24 0 0 0 chr11 4424830 4424854 -146358699 + AT_rich Low_complexity Low_complexity 1 24 0 608 219 50 60 chr11 4424940 4425141 -146358412 - MIR SINE MIR -1 261 63 256 330 29 0 chr11 4426916 4427019 -146356534 - MIR SINE MIR -10 252 147 216 0 0 0 chr11 4427410 4427434 -146356119 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 204 193 60 133 chr11 4428424 4428507 -146355046 + L2 LINE L2 3237 3313 0 262 247 123 25 chr11 4429014 4429095 -146354458 - MIR SINE MIR -92 116 28 265 254 41 75 chr11 4429645 4429784 -146353769 + MIR SINE MIR 9 151 -57 23 0 0 0 chr11 4430251 4430274 -146353279 + AT_rich Low_complexity Low_complexity 1 23 0 339 0 0 41 chr11 4430780 4430829 -146352724 - L1PA3 LINE L1 0 6155 6109 250 379 110 9 chr11 4431866 4432193 -146351360 + LTR16A LTR ERVL 1 360 -90 24 0 0 0 chr11 4432458 4432482 -146351071 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 4432534 4432562 -146350991 + AT_rich Low_complexity Low_complexity 1 28 0 28 71 0 0 chr11 4433138 4433194 -146350359 + AT_rich Low_complexity Low_complexity 1 56 0 183 255 122 61 chr11 4433544 4433642 -146349911 - L3 LINE CR1 -1390 187 84 560 279 141 21 chr11 4433871 4434346 -146349207 + MLT1G1 LTR MaLR 22 578 -17 241 333 70 0 chr11 4434872 4434986 -146348567 - L2 LINE L2 0 3313 3192 279 53 70 0 chr11 4435129 4435186 -146348367 + T-rich Low_complexity Low_complexity 2 62 0 18854 29 0 0 chr11 4435189 4438212 -146345341 - L1PA2 LINE L1 -2 6153 3131 460 125 11 11 chr11 4439187 4439275 -146344278 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 197 128 0 26 chr11 4439379 4439418 -146344135 + (GAAA)n Simple_repeat Simple_repeat 4 41 0 23 0 0 0 chr11 4440701 4440724 -146342829 + AT_rich Low_complexity Low_complexity 1 23 0 489 255 163 0 chr11 4440812 4440965 -146342588 + MER5A DNA MER1_type 12 189 0 276 224 250 0 chr11 4441328 4441444 -146342109 + MIR SINE MIR 117 261 -1 271 180 0 0 chr11 4441727 4441788 -146341765 - L1MA8 LINE L1 -4 6287 6227 22 0 0 0 chr11 4444928 4444950 -146338603 + AT_rich Low_complexity Low_complexity 1 22 0 423 83 0 0 chr11 4447289 4447349 -146336204 + (TG)n Simple_repeat Simple_repeat 1 60 0 1284 226 51 0 chr11 4448913 4449188 -146334365 + AluJo SINE Alu 10 298 -14 381 122 0 37 chr11 4449188 4449270 -146334283 + (GGA)n Simple_repeat Simple_repeat 1 79 0 25 31 0 0 chr11 4449463 4449495 -146334058 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 4449600 4449623 -146333930 + AT_rich Low_complexity Low_complexity 1 23 0 1381 170 49 61 chr11 4449708 4450037 -146333516 - MER44D DNA MER2_type 0 609 15 21 36 0 0 chr11 4450150 4450178 -146333375 + AT_rich Low_complexity Low_complexity 1 28 0 566 290 82 34 chr11 4450259 4450871 -146332682 + L1M4 LINE L1 4408 5047 -1099 * 3354 181 40 14 chr11 4450865 4451560 -146331993 + L1MA7 LINE L1 5491 6203 -88 409 141 76 0 chr11 4451663 4451755 -146331798 + L1MA7 LINE L1 6186 6284 -7 280 295 147 8 chr11 4451780 4451909 -146331644 - MIR SINE MIR -31 231 85 546 260 39 0 chr11 4452085 4452239 -146331314 + L1MCb LINE L1 570 729 -5316 1508 164 75 4 chr11 4452258 4452538 -146331015 - MER7A DNA MER2_type -1 345 48 1712 99 0 0 chr11 4452551 4452784 -146330769 - L1PA10 LINE L1 -168 6000 5768 1309 163 9 70 chr11 4452884 4453228 -146330325 + Ricksha DNA DNA 2922 3244 -7 2606 49 0 0 chr11 4454569 4454877 -146328676 - AluY SINE Alu -3 308 1 317 89 40 40 chr11 4455210 4455311 -146328242 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 300 292 40 86 chr11 4455432 4455753 -146327800 - LTR38 LTR ERV1 0 564 291 1826 111 19 8 chr11 4455891 4456152 -146327401 + AluSx SINE Alu 40 303 -9 239 176 139 46 chr11 4456265 4456373 -146327180 - LTR38B LTR ERV1 -492 118 1 240 371 29 0 chr11 4456755 4456860 -146326693 + MIR SINE MIR 47 154 -108 21 0 0 0 chr11 4456867 4456888 -146326665 + AT_rich Low_complexity Low_complexity 1 21 0 362 205 0 12 chr11 4459532 4459615 -146323938 - L1PA16 LINE L1 -105 6061 5980 2166 110 0 7 chr11 4459770 4460062 -146323491 - AluSx SINE Alu -22 290 1 232 385 111 26 chr11 4460086 4460554 -146322999 + L2 LINE L2 2804 3311 -2 299 259 132 63 chr11 4461021 4461210 -146322343 - MIR SINE MIR -28 234 33 21 36 0 0 chr11 4461624 4461652 -146321901 + AT_rich Low_complexity Low_complexity 1 28 0 1020 194 17 0 chr11 4462265 4462445 -146321108 - AluJb SINE Alu -1 311 129 2433 86 0 6 chr11 4462447 4462761 -146320792 - AluSx SINE Alu 0 312 1 648 70 0 0 chr11 4462831 4462917 -146320636 + (TC)n Simple_repeat Simple_repeat 2 87 0 294 29 0 0 chr11 4462918 4462953 -146320600 - AluSp/q SINE Alu -21 282 248 1094 121 6 6 chr11 4462953 4463110 -146320443 - AluSx SINE Alu -155 157 1 204 182 0 0 chr11 4463156 4463200 -146320353 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 2562 45 3 0 chr11 4463336 4463645 -146319908 - AluY SINE Alu -1 310 1 724 146 48 24 chr11 4464314 4464479 -146319074 + ORSL DNA AcHobo 91 259 -16 23 0 0 0 chr11 4466205 4466228 -146317325 + AT_rich Low_complexity Low_complexity 1 23 0 400 279 79 57 chr11 4468752 4469017 -146314536 + L1M4 LINE L1 3198 3468 -2678 1331 297 66 30 chr11 4469175 4470232 -146313321 + L1M4 LINE L1 3588 4682 -1464 559 203 63 13 chr11 4471824 4471982 -146311571 + L1MA9 LINE L1 5939 6104 -208 341 161 0 0 chr11 4472110 4472166 -146311387 + L1MA9 LINE L1 6104 6159 -153 228 111 0 0 chr11 4472222 4472258 -146311295 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 186 209 0 0 chr11 4472584 4472627 -146310926 + T-rich Low_complexity Low_complexity 1 43 0 485 71 14 0 chr11 4472630 4472700 -146310853 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 224 130 22 0 chr11 4472703 4472749 -146310804 + CT-rich Low_complexity Low_complexity 2 48 0 456 77 0 0 chr11 4474117 4474182 -146309371 + (CA)n Simple_repeat Simple_repeat 1 65 0 30 27 0 0 chr11 4474366 4474403 -146309150 + AT_rich Low_complexity Low_complexity 1 37 0 333 279 90 23 chr11 4476324 4476574 -146306979 - LTR36 LTR ERV1 0 611 345 2113 131 0 0 chr11 4476658 4476963 -146306590 - AluSx SINE Alu -7 305 1 242 188 14 14 chr11 4477037 4477106 -146306447 - LTR36 LTR ERV1 -472 139 71 728 283 61 5 chr11 4477862 4478060 -146305493 - MER63A DNA MER1_type -1 209 1 1017 301 71 31 chr11 4478206 4478628 -146304925 + LTR16A LTR ERVL 1 439 -11 2354 201 126 24 chr11 4478707 4479365 -146304188 - MER50 LTR ERV1 0 734 10 310 204 121 25 chr11 4479542 4479699 -146303854 - L1M4 LINE L1 -897 5137 4966 316 172 60 48 chr11 4479702 4479829 -146303724 - LTR41 LTR ERVL -2 793 650 522 258 26 13 chr11 4480354 4480509 -146303044 - LTR41 LTR ERVL -616 157 1 2009 140 66 3 chr11 4480744 4481108 -146302445 + LTR34 LTR ERV1 313 699 0 336 223 39 31 chr11 4481177 4481307 -146302246 - L1M4 LINE L1 -1302 4732 4602 2171 137 5 39 chr11 4481355 4481743 -146301810 + THE1C LTR MaLR 1 375 0 2274 124 3 17 chr11 4481768 4482114 -146301439 + THE1C-int LTR MaLR 1240 1580 0 1745 162 90 9 chr11 4482116 4482461 -146301092 + THE1C LTR MaLR 3 375 0 330 303 60 0 chr11 4482555 4482740 -146300813 - L1M4 LINE L1 -1594 4440 4245 4023 137 32 33 chr11 4483007 4483735 -146299818 - LTR8A LTR ERV1 0 727 1 186 71 0 0 chr11 4483953 4483981 -146299572 + (CA)n Simple_repeat Simple_repeat 1 28 0 509 332 26 5 chr11 4484673 4484866 -146298687 - MIR SINE MIR -46 216 20 2419 84 0 3 chr11 4484871 4485182 -146298371 - AluSg SINE Alu 0 310 1 796 246 47 9 chr11 4485303 4485514 -146298039 - MER20 DNA MER1_type 0 219 1 218 336 199 0 chr11 4487960 4488106 -146295447 - MIR SINE MIR -21 241 67 235 370 71 28 chr11 4489086 4489297 -146294256 + L2 LINE L2 2460 2679 -635 225 345 48 12 chr11 4489600 4489684 -146293869 + L2 LINE L2 2998 3084 -188 763 165 0 0 chr11 4489851 4489966 -146293587 + FLAM_A SINE Alu 9 123 -19 1828 144 0 0 chr11 4489970 4490227 -146293326 + AluSc SINE Alu 22 278 -31 345 160 0 0 chr11 4490177 4490227 -146293326 + AluSc SINE Alu 229 305 0 211 37 0 0 chr11 4490227 4490254 -146293299 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 262 356 20 45 chr11 4492293 4492495 -146291058 + L2 LINE L2 1767 1963 -1351 2904 201 86 24 chr11 4492503 4493293 -146290260 - L1MC3 LINE L1 0 7785 6947 2209 235 95 74 chr11 4493304 4494212 -146289341 - L1MEc LINE L1 -2646 3736 2789 1536 181 3 45 chr11 4494212 4494536 -146289017 + AluJo SINE Alu 3 314 0 2209 235 95 74 chr11 4494536 4494893 -146288660 - L1MEc LINE L1 -3593 2789 2441 4021 206 40 6 chr11 4495129 4495192 -146288361 - L1MA9 LINE L1 -75 6237 6178 230 0 33 0 chr11 4495192 4495222 -146288331 + (TG)n Simple_repeat Simple_repeat 2 32 0 4021 206 40 6 chr11 4495222 4496027 -146287526 - L1MA9 LINE L1 -134 6178 5339 2772 296 22 10 chr11 4496020 4497914 -146285639 - L1M4 LINE L1 -4401 1634 12 * 323 253 90 24 chr11 4497937 4498232 -146285321 - L1MEc LINE L1 -3953 2471 2110 5052 164 35 9 chr11 4498235 4499178 -146284375 - Tigger1 DNA MER2_type -6 2412 1446 8614 244 24 27 chr11 4499178 4504839 -146278714 + L1PA12 LINE L1 1 5113 -2471 2008 148 0 0 chr11 4504839 4505129 -146278424 + AluSx SINE Alu 1 290 -22 566 299 87 71 chr11 4505289 4505542 -146278011 - L1M4 LINE L1 -1505 4641 4394 3160 143 12 0 chr11 4505542 4506053 -146277500 - L1PA15 LINE L1 -4 6161 5645 3060 178 18 5 chr11 4506053 4506626 -146276927 + LTR22 LTR ERVK 1 580 0 566 299 87 71 chr11 4506626 4507075 -146276478 - L1M4 LINE L1 -1752 4394 3911 1429 113 102 4 chr11 4507075 4507350 -146276203 + L1MA3 LINE L1 6003 6304 -1 566 299 87 71 chr11 4507350 4507736 -146275817 - L1M4 LINE L1 -2235 3911 3533 235 296 45 34 chr11 4508569 4508657 -146274896 + MER5B DNA MER1_type 8 96 -82 1029 275 53 6 chr11 4508669 4509011 -146274542 - L1ME LINE L1 -391 5771 5414 1643 180 42 19 chr11 4509122 4509483 -146274070 - L1MA7 LINE L1 -129 6162 5794 341 316 137 0 chr11 4509572 4509784 -146273769 - L1ME LINE L1 -1058 5088 4848 256 281 0 47 chr11 4509785 4509849 -146273704 - MER5B DNA MER1_type -110 68 8 324 260 91 25 chr11 4509982 4510267 -146273286 - L1ME LINE L1 -2872 3274 2971 261 185 46 62 chr11 4510639 4510704 -146272849 - L2 LINE L2 0 3313 3250 252 309 52 16 chr11 4511363 4511489 -146272064 + MIR SINE MIR 45 176 -62 411 198 0 23 chr11 4514123 4514209 -146269344 - L1PA16 LINE L1 -105 6061 5978 199 319 85 32 chr11 4514789 4514883 -146268670 + L2 LINE L2 3174 3272 0 276 278 52 35 chr11 4515429 4515544 -146268009 - MIR SINE MIR -113 149 33 967 206 23 27 chr11 4516108 4516327 -146267226 + MER20 DNA MER1_type 1 218 -1 310 337 56 59 chr11 4517155 4517461 -146266092 + L1MB1 LINE L1 3869 4173 -1973 22 0 0 0 chr11 4517503 4517525 -146266028 + AT_rich Low_complexity Low_complexity 1 22 0 2223 95 0 23 chr11 4517701 4518007 -146265546 - AluSc SINE Alu -9 300 2 426 267 185 20 chr11 4518175 4518321 -146265232 + MER5A DNA MER1_type 18 187 -2 250 284 58 23 chr11 4518662 4518859 -146264694 + L1MB1 LINE L1 5188 5384 -747 31 0 0 0 chr11 4519716 4519747 -146263806 + AT_rich Low_complexity Low_complexity 1 31 0 264 364 40 7 chr11 4520543 4520694 -146262859 - L2 LINE L2 -9 3304 3149 * 284 359 92 43 chr11 4520686 4520990 -146262563 + L3 LINE CR1 1254 1572 -5 218 200 0 0 chr11 4521310 4521355 -146262198 + T-rich Low_complexity Low_complexity 2 46 0 1415 206 120 5 chr11 4523446 4523814 -146259739 + L1MB1 LINE L1 5768 6177 -12 27 0 0 0 chr11 4523823 4523850 -146259703 + AT_rich Low_complexity Low_complexity 1 27 0 416 202 0 12 chr11 4523854 4523938 -146259615 - MLT1C LTR MaLR -384 83 1 411 335 45 15 chr11 4523948 4524148 -146259405 + HAL1 LINE L1 1599 1804 -703 32 95 0 0 chr11 4524989 4525084 -146258469 + AT_rich Low_complexity Low_complexity 1 95 0 565 343 44 0 chr11 4525091 4525295 -146258258 - MIR SINE MIR -17 245 33 21 36 0 0 chr11 4526143 4526171 -146257382 + AT_rich Low_complexity Low_complexity 1 28 0 267 189 0 0 chr11 4529174 4529227 -146254326 + CT-rich Low_complexity Low_complexity 4 56 0 423 273 66 0 chr11 4530493 4530614 -146252939 - FLAM_A SINE Alu -4 129 1 22 0 0 0 chr11 4530742 4530764 -146252789 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr11 4530842 4530885 -146252668 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 21 95 0 0 chr11 4531063 4531126 -146252427 + AT_rich Low_complexity Low_complexity 1 63 0 414 335 52 47 chr11 4531247 4531731 -146251822 - L1MEd LINE L1 -856 1634 1050 9838 155 42 16 chr11 4531797 4532736 -146250817 + Tigger1 DNA MER2_type 304 1217 -1201 1990 95 23 36 chr11 4532736 4533041 -146250512 - AluSc SINE Alu -8 301 1 9838 155 42 16 chr11 4533041 4534008 -146249545 + Tigger1 DNA MER2_type 1217 2323 -95 2017 170 100 0 chr11 4534008 4534397 -146249156 - MSTC LTR MaLR 0 428 1 9838 155 42 16 chr11 4534397 4534496 -146249057 + Tigger1 DNA MER2_type 2323 2418 0 462 332 14 36 chr11 4534947 4535170 -146248383 - MIR SINE MIR -34 228 11 21 0 0 0 chr11 4535486 4535507 -146248046 + AT_rich Low_complexity Low_complexity 1 21 0 180 200 0 0 chr11 4536098 4536143 -146247410 + CT-rich Low_complexity Low_complexity 2 46 0 24 0 0 0 chr11 4536168 4536192 -146247361 + AT_rich Low_complexity Low_complexity 1 24 0 266 164 0 16 chr11 4538702 4538763 -146244790 + CT-rich Low_complexity Low_complexity 3 62 0 22 80 0 0 chr11 4539691 4539741 -146243812 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr11 4540198 4540241 -146243312 + AT_rich Low_complexity Low_complexity 1 43 0 2539 182 11 17 chr11 4540242 4540763 -146242790 - L1PA16 LINE L1 -4 6162 5645 656 97 0 19 chr11 4541160 4541263 -146242290 + L1MA2 LINE L1 6197 6297 -7 22 0 0 0 chr11 4541283 4541305 -146242248 + AT_rich Low_complexity Low_complexity 1 22 0 356 322 24 10 chr11 4541333 4541538 -146242015 + L1MD1 LINE L1 4657 4864 -1282 1708 252 56 12 chr11 4542034 4542550 -146241003 - L1MB8 LINE L1 -42 6136 5598 * 2718 204 105 24 chr11 4542545 4543286 -146240267 + L1MD1 LINE L1 5404 6204 -38 23 0 0 0 chr11 4543303 4543326 -146240227 + AT_rich Low_complexity Low_complexity 1 23 0 504 284 36 13 chr11 4543345 4543570 -146239983 - L1MEc LINE L1 -3457 2758 2529 776 302 101 21 chr11 4543591 4544104 -146239449 - L1MEc LINE L1 -3918 2478 1925 261 276 0 0 chr11 4544170 4544228 -146239325 + Tigger3(Golem) DNA MER2_type 1 58 -2971 2908 147 8 25 chr11 4544233 4544742 -146238811 + Tigger3(Golem) DNA MER2_type 2529 3028 -1 389 264 31 109 chr11 4544825 4545018 -146238535 + MER58A DNA MER1_type 27 204 -20 610 125 62 0 chr11 4545246 4545342 -146238211 - AluSq/x SINE Alu -206 107 6 2245 75 0 0 chr11 4545356 4545668 -146237885 - AluY SINE Alu 0 312 1 459 289 30 6 chr11 4545694 4545860 -146237693 - L1M4 LINE L1 -1795 5770 5601 4461 54 0 14 chr11 4545867 4546445 -146237108 - L1PA8 LINE L1 -5 6167 5598 1245 72 0 0 chr11 4546445 4546612 -146236941 + L1PA8 LINE L1 5416 5582 -590 714 268 44 12 chr11 4546617 4546867 -146236686 - L1M4 LINE L1 -1988 5577 5320 26 50 0 0 chr11 4546922 4546962 -146236591 + AT_rich Low_complexity Low_complexity 1 40 0 1155 226 7 14 chr11 4548973 4549260 -146234293 - L1MC3 LINE L1 0 7785 7501 1383 131 5 5 chr11 4549613 4549819 -146233734 + AluSg/x SINE Alu 95 300 -12 1890 154 0 3 chr11 4552110 4552402 -146231151 - AluSx SINE Alu -19 293 3 1047 224 94 31 chr11 4553407 4553787 -146229766 - L1MCc LINE L1 -4157 3409 2785 364 20 0 0 chr11 4553924 4553973 -146229580 + L1PA15 LINE L1 6110 6158 -7 252 265 105 50 chr11 4554129 4554310 -146229243 + L2 LINE L2 1813 2003 -1311 325 298 0 8 chr11 4554313 4554434 -146229119 + (TA)n Simple_repeat Simple_repeat 1 120 0 257 275 0 0 chr11 4554441 4554521 -146229032 + L1MC4 LINE L1 6624 6703 -1339 259 51 26 0 chr11 4554768 4554807 -146228746 + L1PA13 LINE L1 6111 6150 -13 324 209 26 26 chr11 4554813 4554928 -146228625 + (TA)n Simple_repeat Simple_repeat 2 116 0 447 356 108 53 chr11 4554932 4555643 -146227910 + L2 LINE L2 2031 2780 -534 21 57 0 0 chr11 4557045 4557080 -146226473 + AT_rich Low_complexity Low_complexity 1 35 0 674 262 69 57 chr11 4557641 4557912 -146225641 + MLT1D LTR MaLR 88 354 -151 36 23 0 0 chr11 4558254 4558297 -146225256 + AT_rich Low_complexity Low_complexity 1 43 0 186 428 11 0 chr11 4559394 4559493 -146224060 - MIR SINE MIR -61 147 50 339 25 0 0 chr11 4559845 4559885 -146223668 + (CA)n Simple_repeat Simple_repeat 2 41 0 315 258 0 43 chr11 4563292 4563385 -146220168 - L1MCc LINE L1 -5517 1530 1442 532 305 147 31 chr11 4563476 4563925 -146219628 - L1MCc LINE L1 -5850 1197 697 215 317 143 19 chr11 4564077 4564238 -146219315 + MER5A DNA MER1_type 4 184 -5 195 100 0 0 chr11 4564379 4564409 -146219144 + (CA)n Simple_repeat Simple_repeat 2 31 0 665 333 24 4 chr11 4564497 4564749 -146218804 + MIR SINE MIR 5 261 -1 213 289 0 0 chr11 4565751 4565796 -146217757 - MER5B DNA MER1_type -8 170 126 322 235 43 43 chr11 4565812 4565927 -146217626 - L1ME1 LINE L1 -210 5956 5842 366 307 51 31 chr11 4565939 4566328 -146217225 + L1MEc LINE L1 1580 1880 -4502 329 107 0 18 chr11 4566351 4566407 -146217146 + (TTC)n Simple_repeat Simple_repeat 2 56 0 345 282 301 0 chr11 4566882 4567045 -146216508 - MIR SINE MIR -23 239 28 2317 222 58 30 chr11 4567958 4569275 -146214278 + L1M2 LINE L1 2295 3652 -3196 550 290 68 17 chr11 4569490 4569783 -146213770 + L1M2 LINE L1 3635 3942 -2906 873 199 10 10 chr11 4569783 4569979 -146213574 + L1M2 LINE L1 4451 4646 -2202 * 4001 203 19 8 chr11 4569978 4570985 -146212568 + L1M2 LINE L1 5164 6178 -743 894 184 6 17 chr11 4571730 4571904 -146211649 + FRAM SINE Alu 1 167 -9 245 387 73 0 chr11 4572608 4572745 -146210808 - MIR SINE MIR -99 163 17 25 65 0 0 chr11 4573629 4573675 -146209878 + AT_rich Low_complexity Low_complexity 1 46 0 1288 223 38 3 chr11 4573801 4574092 -146209461 - MER82 DNA MER2_type -154 499 199 1432 186 108 41 chr11 4574196 4574565 -146208988 + LTR54B LTR ERV1 1 409 -89 1711 155 55 0 chr11 4574565 4574856 -146208697 - AluSx SINE Alu -4 308 2 1432 186 108 41 chr11 4574856 4574949 -146208604 + LTR54B LTR ERV1 409 494 -4 595 253 52 26 chr11 4575380 4575534 -146208019 - MER82 DNA MER2_type -451 202 45 1071 216 132 70 chr11 4575549 4576048 -146207505 - MER61E LTR ERV1 -39 530 1 369 0 0 0 chr11 4576096 4576137 -146207416 + (TG)n Simple_repeat Simple_repeat 2 42 0 1841 258 36 37 chr11 4576175 4576976 -146206577 - L1MA8 LINE L1 0 6355 8 279 150 17 0 chr11 4577254 4577314 -146206239 - LTR54B LTR ERV1 -13 485 425 343 247 12 12 chr11 4577824 4577905 -146205648 - MIR SINE MIR -110 152 72 187 323 31 15 chr11 4577945 4578010 -146205543 - MIR SINE MIR -196 66 1 228 35 0 0 chr11 4578631 4578660 -146204893 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2302 72 0 0 chr11 4578662 4578952 -146204601 - AluY SINE Alu -21 290 1 21 0 0 0 chr11 4579457 4579478 -146204075 + AT_rich Low_complexity Low_complexity 1 21 0 2439 149 4 30 chr11 4580036 4580498 -146203055 + L1MA4 LINE L1 5844 6293 -7 21 0 0 0 chr11 4582956 4582977 -146200576 + AT_rich Low_complexity Low_complexity 1 21 0 2030 109 0 3 chr11 4583652 4583971 -146199582 - AluSx SINE Alu 0 318 1 277 343 0 0 chr11 4584954 4585056 -146198497 - MLT1L LTR MaLR -372 243 142 2207 105 3 0 chr11 4585267 4585573 -146197980 + AluSp SINE Alu 1 307 -6 42 82 0 0 chr11 4585875 4585973 -146197580 + AT_rich Low_complexity Low_complexity 1 98 0 393 197 13 0 chr11 4585993 4586069 -146197484 + Charlie3 DNA MER1_type 1 77 -2633 23 0 0 0 chr11 4586899 4586922 -146196631 + AT_rich Low_complexity Low_complexity 1 23 0 495 301 31 35 chr11 4587469 4587649 -146195904 - L1ME LINE L1 -362 5800 5620 1915 152 27 24 chr11 4587649 4588023 -146195530 + THE1C LTR MaLR 1 375 0 495 301 31 35 chr11 4588023 4588071 -146195482 - L1ME LINE L1 -542 5620 5573 381 268 70 23 chr11 4588074 4588315 -146195238 - L1ME LINE L1 -649 5517 5268 209 60 100 0 chr11 4588345 4588395 -146195158 + (TA)n Simple_repeat Simple_repeat 1 55 0 1021 103 0 0 chr11 4588644 4588780 -146194773 - AluSc SINE Alu -13 296 161 285 286 0 0 chr11 4590619 4590703 -146192850 - L1MC4 LINE L1 -1344 6698 6615 * 290 215 51 0 chr11 4590628 4590707 -146192846 + L1MC4 LINE L1 6614 6696 -1346 21 0 0 0 chr11 4590812 4590833 -146192720 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 4590988 4591018 -146192535 + AT_rich Low_complexity Low_complexity 1 30 0 8054 68 0 8 chr11 4791697 4792829 -145990724 + L1P LINE L1 978 2100 -4046 22 0 0 0 chr11 4792929 4792951 -145990602 + GC_rich Low_complexity Low_complexity 1 22 0 649 222 8 0 chr11 4794469 4794595 -145988958 - Tigger1 DNA MER2_type -2290 128 2 2028 188 91 99 chr11 4794668 4795392 -145988161 + LTR8A LTR ERV1 1 718 -9 346 314 0 8 chr11 4796121 4796242 -145987311 + MER94 DNA DNA 15 134 0 23 0 0 0 chr11 4799374 4799397 -145984156 + AT_rich Low_complexity Low_complexity 1 23 0 34340 38 3 3 chr11 4799525 4804772 -145978781 + L1PA4 LINE L1 912 6153 -2 315 0 0 0 chr11 4806861 4806896 -145976657 + (CA)n Simple_repeat Simple_repeat 1 35 0 245 200 17 0 chr11 4807051 4807111 -145976442 + (CA)n Simple_repeat Simple_repeat 2 62 0 219 250 0 44 chr11 4807751 4807819 -145975734 + L2 LINE L2 3249 3313 0 24 67 0 0 chr11 4808098 4808143 -145975410 + AT_rich Low_complexity Low_complexity 1 45 0 201 357 133 0 chr11 4808975 4809073 -145974480 + L2 LINE L2 3156 3266 -6 1834 110 0 19 chr11 4809569 4809833 -145973720 + AluSq SINE Alu 14 272 -41 349 222 37 0 chr11 4809836 4809971 -145973582 + GA-rich Low_complexity Low_complexity 2 141 0 3870 96 7 4 chr11 4810453 4811003 -145972550 - MER41A LTR ERV1 -2 552 1 655 332 22 0 chr11 4811477 4811700 -145971853 + MIR SINE MIR 35 262 0 192 77 0 0 chr11 4812394 4812420 -145971133 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr11 4812798 4812822 -145970731 + AT_rich Low_complexity Low_complexity 1 24 0 216 143 0 0 chr11 4813743 4813785 -145969768 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 285 338 152 22 chr11 4813866 4814135 -145969418 - L2 LINE L2 -18 3295 2992 3531 174 52 57 chr11 4814895 4816026 -145967527 - L1MA9 LINE L1 -73 6239 5109 1991 206 30 4 chr11 4816037 4816497 -145967056 + L1MA9 LINE L1 4628 5099 -1047 7592 76 0 6 chr11 4816575 4817623 -145965930 + L1PA3 LINE L1 8 1049 -5097 22977 40 2 0 chr11 4817724 4821405 -145962148 + L1PA3 LINE L1 2493 6182 0 310 321 126 14 chr11 4821454 4821731 -145961822 - L1MCa LINE L1 -4915 1511 1204 495 229 61 79 chr11 4821735 4821949 -145961604 + MSTB1 LTR MaLR 212 421 -11 237 128 0 0 chr11 4823035 4823082 -145960471 + (TC)n Simple_repeat Simple_repeat 1 47 0 722 258 19 0 chr11 4826078 4826233 -145957320 - FRAM SINE Alu -9 167 10 206 264 92 35 chr11 4826244 4826331 -145957222 + MIR3 SINE MIR 113 204 -4 196 223 11 11 chr11 4827615 4827709 -145955844 + (TA)n Simple_repeat Simple_repeat 1 94 0 380 256 30 6 chr11 4827723 4827891 -145955662 + (TA)n Simple_repeat Simple_repeat 1 172 0 234 411 61 17 chr11 4827947 4828127 -145955426 - L2 LINE L2 -188 3084 2897 298 373 128 33 chr11 4828460 4829371 -145954182 - L2 LINE L2 -534 2780 1783 731 323 86 10 chr11 4829378 4829834 -145953719 + L2 LINE L2 2685 3185 -128 554 68 0 0 chr11 4829869 4829942 -145953611 - MADE1 DNA Mariner -7 73 1 25 31 0 0 chr11 4830063 4830095 -145953458 + AT_rich Low_complexity Low_complexity 1 32 0 307 385 24 61 chr11 4830158 4830405 -145953148 - L2 LINE L2 -82 3190 2953 213 382 55 30 chr11 4830673 4830872 -145952681 - L2 LINE L2 -690 2624 2421 255 337 61 32 chr11 4830889 4831135 -145952418 - L2 LINE L2 -1034 2280 2028 262 335 101 59 chr11 4833154 4833441 -145950112 + L2 LINE L2 3012 3310 -3 531 157 22 0 chr11 4833652 4833741 -145949812 + AluJ/FLAM SINE Alu 1 91 -221 1428 199 32 0 chr11 4833742 4833993 -145949560 + AluJo SINE Alu 50 308 -4 2534 59 0 0 chr11 4834537 4834841 -145948712 + AluY SINE Alu 1 304 -7 374 319 59 0 chr11 4834843 4835012 -145948541 + L1ME LINE L1 5485 5663 -458 186 287 202 0 chr11 4835024 4835118 -145948435 + L2 LINE L2 3192 3304 -9 217 224 0 0 chr11 4835491 4835540 -145948013 + (ATG)n Simple_repeat Simple_repeat 3 51 0 462 256 103 39 chr11 4835593 4835796 -145947757 - MIR SINE MIR -44 218 3 240 191 63 0 chr11 4835979 4836042 -145947511 - L1MC1 LINE L1 -1 6332 6266 600 226 40 22 chr11 4836066 4836247 -145947306 - MIR SINE MIR -14 248 63 213 308 0 0 chr11 4836532 4836584 -145946969 + L2 LINE L2 2914 2965 -307 184 353 0 0 chr11 4837627 4837678 -145945875 - MIR SINE MIR -131 131 81 338 325 113 0 chr11 4837891 4838042 -145945511 - MIR SINE MIR -93 169 2 10649 34 9 1 chr11 4838066 4840117 -145943436 + L1PA4 LINE L1 4079 6148 -7 2135 139 35 16 chr11 4840480 4840848 -145942705 + THE1C LTR MaLR 1 375 0 186 346 79 10 chr11 4841306 4841407 -145942146 - MIR SINE MIR -72 190 83 180 200 0 0 chr11 4841670 4841715 -145941838 + A-rich Low_complexity Low_complexity 1 45 0 366 333 18 9 chr11 4842488 4842599 -145940954 + L2 LINE L2 2981 3092 -180 513 230 11 11 chr11 4843807 4843981 -145939572 + CT-rich Low_complexity Low_complexity 1 174 0 1636 195 30 10 chr11 4844017 4844320 -145939233 - AluJb SINE Alu 0 312 4 3069 83 106 176 chr11 4846126 4847051 -145936502 + LTR12 LTR ERV1 1 2428 -10 363 332 93 10 chr11 4847189 4847382 -145936171 - MIR SINE MIR -48 214 6 361 248 28 28 chr11 4847423 4847532 -145936021 - L2 LINE L2 -6 3307 3199 358 357 41 26 chr11 4848889 4849158 -145934395 + L1M4 LINE L1 2466 2738 -3408 299 263 18 9 chr11 4849158 4849272 -145934281 + L1ME3A LINE L1 6049 6163 -7 312 322 59 59 chr11 4849324 4849563 -145933990 - HAL1 LINE L1 -2151 356 118 463 125 0 23 chr11 4850338 4850426 -145933127 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1523 247 146 0 chr11 4850520 4851035 -145932518 + MER90 LTR ERV1 3 592 -22 349 286 79 62 chr11 4851369 4851610 -145931943 + L1ME LINE L1 1075 1319 -5097 563 290 106 24 chr11 4851618 4852220 -145931333 + L1ME LINE L1 1152 2013 -4594 514 186 21 0 chr11 4852469 4852566 -145930987 + Tigger3b DNA MER2_type 1 99 -1132 * 5153 145 42 4 chr11 4852538 4853494 -145930059 + Tigger3b DNA MER2_type 240 1231 0 1419 227 36 74 chr11 4853576 4854101 -145929452 + MLT1D LTR MaLR 1 505 0 41609 40 7 0 chr11 4854313 4860471 -145923082 + L1PA3 LINE L1 3 6198 0 3077 90 2 0 chr11 4860479 4860900 -145922653 + L1PA7 LINE L1 5733 6154 0 1423 210 49 9 chr11 4861386 4861714 -145921839 - MER2 DNA MER2_type 0 344 4 317 335 62 11 chr11 4861720 4861899 -145921654 + MIR SINE MIR 53 240 -22 23 54 0 0 chr11 4862538 4862575 -145920978 + AT_rich Low_complexity Low_complexity 1 37 0 225 267 40 13 chr11 4863418 4863493 -145920060 + MIR SINE MIR 175 251 -11 264 337 192 4 chr11 4863694 4863949 -145919604 - L2 LINE L2 -1210 2104 1802 2502 146 9 16 chr11 4866218 4866350 -145917203 - MER61B LTR ERV1 0 425 294 287 25 25 0 chr11 4866350 4866390 -145917163 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2502 146 9 16 chr11 4866390 4866681 -145916872 - MER61B LTR ERV1 -131 294 5 2196 66 7 10 chr11 4866708 4867009 -145916544 + AluY SINE Alu 1 300 -11 3619 206 36 33 chr11 4867952 4868637 -145914916 + L1MC3 LINE L1 5726 6416 -1369 2953 203 122 6 chr11 4868637 4869342 -145914211 + LTR48 LTR ERV1 1 787 0 3619 206 36 33 chr11 4869342 4869635 -145913918 + L1MC3 LINE L1 6416 6707 -1078 743 243 57 29 chr11 4869838 4870220 -145913333 + Charlie2 DNA MER1_type 2413 2805 -57 991 167 69 0 chr11 4870220 4870424 -145913129 - Tigger1 DNA MER2_type -1 2417 2200 2156 150 26 3 chr11 4870535 4870922 -145912631 - L1MA4A LINE L1 -6 6297 5902 306 267 35 69 chr11 4870945 4871061 -145912492 + MIR SINE MIR 1 112 -150 243 272 37 0 chr11 4871253 4871334 -145912219 + MIR SINE MIR 119 202 -60 239 133 22 0 chr11 4871933 4871978 -145911575 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 22 35 0 0 chr11 4871979 4872008 -145911545 + AT_rich Low_complexity Low_complexity 1 29 0 1330 169 13 30 chr11 4872263 4872500 -145911053 + AluJo SINE Alu 71 303 -9 763 198 93 0 chr11 4872694 4872856 -145910697 + MER5B DNA MER1_type 1 177 -1 270 288 99 11 chr11 4873427 4873518 -145910035 - MIR SINE MIR -102 106 20 347 327 101 12 chr11 4873781 4873949 -145909604 - L3 LINE CR1 -48 1529 1347 359 294 24 76 chr11 4874030 4874241 -145909312 + L2 LINE L2 3114 3313 0 201 403 57 8 chr11 4874551 4874675 -145908878 + L2 LINE L2 3141 3270 -2 240 379 148 6 chr11 4874679 4874848 -145908705 + L3 LINE CR1 1046 1238 -339 370 291 191 24 chr11 4874880 4875090 -145908463 + L3 LINE CR1 1331 1575 -2 198 284 222 37 chr11 4876161 4876323 -145907230 + MIR SINE MIR 1 192 -70 255 103 0 0 chr11 4877728 4877767 -145905786 + (TC)n Simple_repeat Simple_repeat 2 40 0 652 333 6 6 chr11 4878171 4878354 -145905199 - MER5A DNA MER1_type -5 184 2 368 314 9 0 chr11 4878495 4878600 -145904953 - MER5A DNA MER1_type -83 106 1 302 320 66 40 chr11 4881209 4881481 -145902072 + L2 LINE L2 1819 2097 -1217 2805 44 3 0 chr11 4884396 4884738 -145898815 + L1PA5 LINE L1 5804 6146 -8 239 215 38 0 chr11 4884824 4884903 -145898650 + L1MC4 LINE L1 7960 8041 -1 189 359 26 13 chr11 4885210 4885288 -145898265 - L2 LINE L2 -87 3185 3107 479 272 92 29 chr11 4885774 4886021 -145897532 + LTR33A LTR ERVL 161 462 -61 892 281 141 23 chr11 4886035 4886715 -145896838 + LTR50 LTR ERVL 1 791 -4 214 335 53 21 chr11 4887986 4888108 -145895445 + MIR3 SINE MIR 14 138 -103 2130 127 0 0 chr11 4888588 4888879 -145894674 + AluSx SINE Alu 3 293 -19 184 346 103 9 chr11 4888913 4889020 -145894533 - MIR3 SINE MIR -87 121 5 938 50 0 0 chr11 4889259 4889379 -145894174 - L1PA8A LINE L1 -187 5944 5825 373 74 0 0 chr11 4889379 4889429 -145894124 + L1PA8 LINE L1 6117 6170 -2 236 296 54 18 chr11 4889500 4889611 -145893942 + MIR SINE MIR 106 256 -6 2367 63 6 31 chr11 4890702 4891021 -145892532 + AluY SINE Alu 1 311 0 215 324 43 2 chr11 4893205 4893391 -145890162 - MIR SINE MIR -1 261 24 510 181 0 0 chr11 4894011 4894116 -145889437 + GA-rich Low_complexity Low_complexity 2 106 0 666 136 42 8 chr11 4895013 4895131 -145888422 - L1PA15 LINE L1 0 6816 6695 1868 167 16 0 chr11 4895137 4895460 -145888093 + MSTA LTR MaLR 21 348 -80 6998 199 19 7 chr11 4895489 4897891 -145885662 - L1PA15 LINE L1 -111 6705 4279 5107 115 25 28 chr11 4897929 4898815 -145884738 + L1PA13 LINE L1 5280 6162 -1 491 256 63 0 chr11 4898811 4899002 -145884551 - L1PA15 LINE L1 -4817 1970 1768 * 1676 259 11 5 chr11 4899328 4899776 -145883777 - L1PA15 LINE L1 -4996 1791 1341 1806 300 43 34 chr11 4900004 4900747 -145882806 - L1PA15 LINE L1 -6037 750 1 6501 21 4 16 chr11 4903048 4903679 -145879874 - L1PA2 LINE L1 -6 6149 5529 2763 16 0 0 chr11 4903679 4903985 -145879568 + AluYa5 SINE Alu 1 306 -5 6501 21 4 16 chr11 4903985 4904171 -145879382 - L1PA2 LINE L1 -626 5529 5342 5717 29 7 0 chr11 4904169 4904899 -145878654 + L1PA2 LINE L1 4598 5332 -814 * 406 361 12 0 chr11 4908835 4909004 -145874549 + MER5B DNA MER1_type 5 175 -3 561 315 119 39 chr11 4909249 4909769 -145873784 + L2 LINE L2 2232 2793 -521 2256 118 0 0 chr11 4910110 4910406 -145873147 + AluSg SINE Alu 1 296 -14 221 340 128 0 chr11 4910518 4910612 -145872941 + MIR SINE MIR 48 153 -109 184 283 250 0 chr11 4911456 4911548 -145872005 - MIR SINE MIR -60 148 34 377 266 55 9 chr11 4911656 4911765 -145871788 - MER81 DNA DNA 0 114 1 262 346 40 0 chr11 4911767 4911868 -145871685 + MIR SINE MIR 38 142 -120 240 86 0 0 chr11 4912609 4912644 -145870909 + (TG)n Simple_repeat Simple_repeat 1 35 0 279 352 92 5 chr11 4912851 4913047 -145870506 - MIR SINE MIR -3 259 47 457 318 58 71 chr11 4914005 4914540 -145869013 + L2 LINE L2 2770 3298 -15 326 296 191 16 chr11 4914953 4915142 -145868411 - MIR SINE MIR 0 262 41 510 309 7 20 chr11 4915435 4915587 -145867966 + MIR SINE MIR 28 177 -85 1194 199 23 4 chr11 4915672 4915934 -145867619 + L1MA10 LINE L1 6000 6266 -68 40634 35 22 1 chr11 4916256 4922368 -145861185 + L1PA2 LINE L1 1 6241 0 315 244 92 24 chr11 4923391 4923535 -145860018 - MIR SINE MIR -59 203 45 1234 245 102 22 chr11 4924283 4924568 -145858985 + L2 LINE L2 2740 3001 -312 1973 155 25 50 chr11 4924568 4924968 -145858585 + MLT1B LTR MaLR 1 390 0 1234 245 102 22 chr11 4924968 4925200 -145858353 + L2 LINE L2 3001 3302 -11 294 384 16 0 chr11 4925846 4925971 -145857582 + MIR3 SINE MIR 11 137 -71 224 336 25 33 chr11 4926115 4926237 -145857316 - MIR SINE MIR -83 179 59 276 315 27 63 chr11 4926261 4926372 -145857181 - MIR SINE MIR -81 127 21 771 244 122 0 chr11 4928827 4929040 -145854513 + MIR SINE MIR 12 250 -12 186 282 39 13 chr11 4929115 4929193 -145854360 + MIR SINE MIR 156 235 -27 22 0 0 0 chr11 4929669 4929691 -145853862 + AT_rich Low_complexity Low_complexity 1 22 0 242 158 26 0 chr11 4929937 4929975 -145853578 + L2 LINE L2 3213 3251 -21 21 36 0 0 chr11 4931194 4931222 -145852331 + AT_rich Low_complexity Low_complexity 1 28 0 1915 136 8 0 chr11 4931437 4931701 -145851852 - AluSq SINE Alu -47 266 1 218 308 0 96 chr11 4931828 4931932 -145851621 + MIR3 SINE MIR 10 103 -105 452 289 123 24 chr11 4933374 4933585 -145849968 + MIR SINE MIR 28 259 -3 643 281 0 6 chr11 4933767 4933938 -145849615 + L1M3c LINE L1 1357 1526 -5970 * 1531 236 73 25 chr11 4933933 4934684 -145848869 + L1M3c LINE L1 2943 3737 -3828 2227 190 28 20 chr11 4934704 4935162 -145848391 - MER88 LTR ERVL -2 462 1 201 250 23 0 chr11 4935858 4935902 -145847651 + GA-rich Low_complexity Low_complexity 2 46 0 1429 92 67 0 chr11 4936036 4936231 -145847322 + AluSg/x SINE Alu 87 294 -18 1039 225 9 0 chr11 4936532 4936754 -145846799 + HERVL74 LTR ERVL 1869 2092 -3593 4148 208 11 34 chr11 4936768 4937700 -145845853 + HERVL74 LTR ERVL 2428 3337 -2348 912 177 0 12 chr11 4937685 4937849 -145845704 + HERVL74 LTR ERVL 3479 3640 -2045 * 545 328 131 35 chr11 4938180 4938690 -145844863 + L2 LINE L2 2133 2691 -623 489 185 130 100 chr11 4939259 4939459 -145844094 + MER65A LTR ERV1 1 206 -239 342 229 44 66 chr11 4939596 4939779 -145843774 + MER65A LTR ERV1 267 445 0 341 376 19 19 chr11 4940262 4940467 -145843086 + L2 LINE L2 2751 2955 -359 1794 48 4 4 chr11 4940608 4940839 -145842714 - L1PA6 LINE L1 -7 6147 5917 438 326 153 42 chr11 4940839 4941370 -145842183 + L2 LINE L2 2465 3094 -219 680 266 34 34 chr11 4941440 4941647 -145841906 + MIR SINE MIR 20 226 -36 380 352 23 8 chr11 4941678 4941806 -145841747 + L2 LINE L2 3134 3263 -9 228 250 110 0 chr11 4941823 4941923 -145841630 + L1ME4a LINE L1 5840 5950 -171 714 284 87 18 chr11 4942704 4942933 -145840620 + MIR SINE MIR 13 257 -5 2453 103 39 25 chr11 4944320 4944679 -145838874 - THE1B LTR MaLR 0 364 1 275 360 55 55 chr11 4945248 4945629 -145837924 + L2 LINE L2 2910 3290 -23 2121 286 143 52 chr11 4949118 4950264 -145833289 - L2 LINE L2 -767 2547 1507 3534 77 41 0 chr11 4950264 4950706 -145832847 - LTR46 LTR ERV1 0 460 1 2121 286 143 52 chr11 4950706 4950730 -145832823 - L2 LINE L2 -1807 1507 1487 845 227 32 16 chr11 4950730 4950915 -145832638 + MER5A DNA MER1_type 2 189 0 2121 286 143 52 chr11 4950915 4951077 -145832476 - L2 LINE L2 -1827 1487 1092 574 354 108 6 chr11 4951121 4951474 -145832079 - L2 LINE L2 -2810 504 116 950 296 148 10 chr11 4951675 4952326 -145831227 + L2 LINE L2 2507 3263 -50 511 246 81 0 chr11 4958195 4958334 -145825219 - MIR SINE MIR -49 213 63 357 257 140 29 chr11 4959050 4959221 -145824332 - MIR SINE MIR -44 218 29 2151 130 0 3 chr11 4960050 4960350 -145823203 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr11 4960784 4960806 -145822747 + (TA)n Simple_repeat Simple_repeat 2 23 0 2266 127 0 0 chr11 4960806 4961113 -145822440 - AluSx SINE Alu -5 307 1 329 294 29 52 chr11 4962453 4962589 -145820964 - MIR SINE MIR -109 153 21 577 233 109 57 chr11 4962787 4962947 -145820606 + MIR SINE MIR 25 198 -64 524 15 15 0 chr11 4962947 4963012 -145820541 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 577 233 109 57 chr11 4963012 4963044 -145820509 + MIR SINE MIR 198 227 -35 475 344 54 13 chr11 4967147 4967371 -145816182 - MIR SINE MIR -10 252 20 1388 71 33 0 chr11 4967888 4968070 -145815483 + L1PA13 LINE L1 5975 6162 -1 2353 87 0 22 chr11 4968548 4968859 -145814694 + AluSg SINE Alu 1 304 -6 203 308 0 15 chr11 4969677 4969742 -145813811 - MIR3 SINE MIR -139 69 6 3586 80 14 12 chr11 4969769 4970254 -145813299 - LTR15 LTR ERV1 -7 486 1 858 249 12 70 chr11 4970919 4971176 -145812377 + MIR SINE MIR 21 262 0 2180 127 3 0 chr11 4971270 4971570 -145811983 - AluSx SINE Alu -11 301 1 228 322 96 17 chr11 4972758 4972873 -145810680 + MIR SINE MIR 90 213 -49 27 29 0 0 chr11 4974219 4974253 -145809300 + AT_rich Low_complexity Low_complexity 1 34 0 2253 119 3 0 chr11 4974410 4974721 -145808832 + AluSx SINE Alu 1 312 0 28 0 0 0 chr11 4974836 4974864 -145808689 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 4974983 4975015 -145808538 + AT_rich Low_complexity Low_complexity 1 32 0 8866 221 23 13 chr11 4975389 4976347 -145807206 - L1P4 LINE L1 -735 5431 4485 2373 76 0 22 chr11 4976347 4976661 -145806892 - AluY SINE Alu -4 307 1 8866 221 23 13 chr11 4976661 4976714 -145806839 - L1P4 LINE L1 -1681 4485 4434 288 77 0 0 chr11 4976714 4976753 -145806800 + (TG)n Simple_repeat Simple_repeat 1 39 0 8866 221 23 13 chr11 4976753 4977969 -145805584 - L1P4 LINE L1 -1732 4434 3178 1945 72 0 4 chr11 4978039 4978275 -145805278 + AluY SINE Alu 67 301 -10 1291 175 74 21 chr11 4978904 4979189 -145804364 - L1 LINE L1 -2147 3999 3700 * 2868 185 12 0 chr11 4979184 4979746 -145803807 + L1 LINE L1 3985 4553 -1593 612 149 0 0 chr11 4979748 4979842 -145803711 + L1PB4 LINE L1 6063 6156 0 1863 168 35 23 chr11 4980370 4980764 -145802789 + L1MA7 LINE L1 5889 6287 -4 388 272 24 16 chr11 4980907 4981032 -145802521 + MIR SINE MIR 20 145 -63 345 257 40 20 chr11 4981050 4981202 -145802351 + L2 LINE L2 2804 2958 -314 28 29 0 0 chr11 4981243 4981278 -145802275 + AT_rich Low_complexity Low_complexity 1 35 0 337 264 132 35 chr11 4981287 4981431 -145802122 + L2 LINE L2 3156 3313 0 5426 78 4 13 chr11 4981433 4982138 -145801415 - L1PA13 LINE L1 0 6163 5465 300 287 25 25 chr11 4984436 4984558 -145798995 + MER94 DNA DNA 1 122 -12 243 225 48 100 chr11 4985620 4985777 -145797776 + L1MC4 LINE L1 7402 7530 -431 2409 76 0 0 chr11 4985777 4986078 -145797475 - AluSx SINE Alu -11 301 1 243 225 48 100 chr11 4986078 4986229 -145797324 + L1MC4 LINE L1 7530 7687 -274 390 275 47 109 chr11 4986257 4986471 -145797082 + MIR SINE MIR 1 196 -66 2236 99 3 7 chr11 4986471 4986765 -145796788 - AluSg SINE Alu -17 293 1 390 275 47 109 chr11 4986765 4986826 -145796727 + MIR SINE MIR 196 259 -3 212 318 32 0 chr11 4987642 4987705 -145795848 + MIR SINE MIR 47 111 -151 1429 176 0 0 chr11 4987878 4988105 -145795448 - L1PB3 LINE L1 -7 6147 5921 1516 188 120 0 chr11 4988948 4989256 -145794297 + MER7A DNA MER2_type 3 345 -1 218 309 9 91 chr11 4990071 4990181 -145793372 - L2 LINE L2 0 3313 3213 315 267 182 40 chr11 4991894 4992070 -145791483 - MIR SINE MIR -4 258 58 486 270 122 0 chr11 4992575 4992723 -145790830 - MIR SINE MIR -69 193 28 274 372 78 52 chr11 4993160 4993504 -145790049 - L2 LINE L2 -1 3271 2919 247 330 57 0 chr11 4993595 4993683 -145789870 - L2 LINE L2 -44 3228 3136 25 31 0 0 chr11 4993844 4993876 -145789677 + AT_rich Low_complexity Low_complexity 1 32 0 365 300 62 31 chr11 4993930 4994090 -145789463 - MIR SINE MIR -97 165 1 207 383 12 0 chr11 4994097 4994178 -145789375 - L2 LINE L2 -285 2987 2906 198 0 0 0 chr11 4994208 4994230 -145789323 + (TGG)n Simple_repeat Simple_repeat 1 22 0 359 179 0 13 chr11 4994276 4994354 -145789199 + GA-rich Low_complexity Low_complexity 2 78 0 501 47 0 0 chr11 4994355 4994419 -145789134 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 451 297 59 18 chr11 4994634 4994856 -145788697 + MIR SINE MIR 1 231 -31 21 57 0 0 chr11 4994868 4994903 -145788650 + AT_rich Low_complexity Low_complexity 1 35 0 282 184 158 53 chr11 4995612 4995688 -145787865 + MER96 DNA MER1_type? 1 84 -91 296 294 76 21 chr11 4997065 4997303 -145786250 - L1ME4a LINE L1 -17 6104 5854 4609 108 75 11 chr11 4997396 4998125 -145785428 - L1PA13 LINE L1 0 6163 5388 2182 54 65 7 chr11 4998321 4998599 -145784954 + AluY SINE Alu 2 295 -16 25 65 0 0 chr11 4999200 4999246 -145784307 + AT_rich Low_complexity Low_complexity 1 46 0 2262 117 0 0 chr11 5001628 5001935 -145781618 + AluSx SINE Alu 1 307 -5 471 279 80 40 chr11 5002589 5002815 -145780738 - LTR68 LTR ERV1 -505 235 1 452 297 104 16 chr11 5003210 5003402 -145780151 + MER63A DNA MER1_type 1 209 -1 3116 197 66 8 chr11 5003614 5004268 -145779285 - L1MB5 LINE L1 -8 6166 5475 204 89 0 54 chr11 5004268 5004324 -145779229 + (TA)n Simple_repeat Simple_repeat 2 54 0 35 63 0 0 chr11 5004877 5004940 -145778613 + AT_rich Low_complexity Low_complexity 1 63 0 245 203 31 16 chr11 5005308 5005372 -145778181 - LTR54 LTR ERV1 -47 463 399 2684 242 55 6 chr11 5007507 5008233 -145775320 + L1MB7 LINE L1 323 1084 -5196 3055 103 0 0 chr11 5008234 5008640 -145774913 + L1P3 LINE L1 1 406 -6055 2456 94 1 80 chr11 5008647 5008803 -145774750 + L1P3 LINE L1 5328 5495 -659 721 48 0 0 chr11 5008803 5008887 -145774666 + AluSg/x SINE Alu 215 298 -12 2456 94 1 80 chr11 5008887 5009168 -145774385 + L1P3 LINE L1 5495 5756 -398 1119 219 59 22 chr11 5009164 5009484 -145774069 + L1MB7 LINE L1 1161 1492 -4892 * 27 29 0 0 chr11 5009810 5009844 -145773709 + AT_rich Low_complexity Low_complexity 1 34 0 209 401 6 0 chr11 5010389 5010556 -145772997 + (CCA)n Simple_repeat Simple_repeat 1 168 0 2163 84 3 11 chr11 5011224 5011508 -145772045 - AluSp SINE Alu -10 303 22 792 237 11 12 chr11 5011555 5011775 -145771778 + L1MB7 LINE L1 1471 2059 -4324 284 243 14 0 chr11 5011760 5011834 -145771719 + L1MB7 LINE L1 4188 4262 -2120 * 378 245 0 101 chr11 5011836 5011928 -145771625 + L1MB7 LINE L1 4387 4452 -1930 2459 60 7 0 chr11 5011928 5012228 -145771325 + AluY SINE Alu 1 302 -9 378 245 0 101 chr11 5012228 5012323 -145771230 + L1MB7 LINE L1 4452 4555 -1827 452 211 0 0 chr11 5012325 5012420 -145771133 + L1MB7 LINE L1 5252 5346 -1036 1389 151 0 47 chr11 5013747 5013842 -145769711 - AluSg SINE Alu -88 222 124 2111 115 0 36 chr11 5013842 5014146 -145769407 - AluSg SINE Alu -17 293 1 1389 151 0 47 chr11 5014146 5014282 -145769271 - AluSg SINE Alu -186 124 2 1064 155 12 0 chr11 5014283 5014444 -145769109 - AluSg/x SINE Alu -16 294 132 2898 55 0 3 chr11 5014444 5014789 -145768764 - SVA Other Other 0 1386 1043 3630 220 40 21 chr11 5014889 5015920 -145767633 + L1MB7 LINE L1 5351 6404 -16 253 123 18 18 chr11 5018867 5018924 -145764629 + GA-rich Low_complexity Low_complexity 2 58 0 234 0 0 0 chr11 5018924 5018950 -145764603 + (TG)n Simple_repeat Simple_repeat 2 27 0 190 210 0 49 chr11 5019669 5019750 -145763803 + (TATG)n Simple_repeat Simple_repeat 3 79 0 1985 113 0 15 chr11 5020145 5020419 -145763134 + AluSx SINE Alu 27 296 -16 724 201 152 0 chr11 5020680 5020844 -145762709 - MER5A DNA MER1_type 0 189 1 332 291 15 67 chr11 5020981 5021004 -145762549 - MIR SINE MIR -63 145 122 2568 37 0 3 chr11 5021004 5021302 -145762251 + AluY SINE Alu 15 311 0 332 291 15 67 chr11 5021302 5021412 -145762141 - MIR SINE MIR -86 122 19 2339 78 0 3 chr11 5021736 5022029 -145761524 - AluSg SINE Alu -18 292 1 21 57 0 0 chr11 5024023 5024058 -145759495 + AT_rich Low_complexity Low_complexity 1 35 0 567 248 75 37 chr11 5024903 5024985 -145758568 + MIR SINE MIR 41 118 -144 1753 190 3 0 chr11 5024985 5025290 -145758263 - AluSx SINE Alu -5 307 2 567 248 75 37 chr11 5025290 5025421 -145758132 + MIR SINE MIR 118 262 0 24 32 0 0 chr11 5025660 5025691 -145757862 + AT_rich Low_complexity Low_complexity 1 31 0 4271 49 0 0 chr11 5025691 5026180 -145757373 - L1PA5 LINE L1 0 6154 5666 358 385 34 6 chr11 5026206 5026385 -145757168 + L2 LINE L2 2869 3052 -261 747 269 103 17 chr11 5026551 5026935 -145756618 + L1MC/D LINE L1 5317 5744 -625 367 233 39 39 chr11 5027078 5027207 -145756346 + MIR SINE MIR 77 205 -57 298 233 69 74 chr11 5027224 5027413 -145756140 - L1ME LINE L1 -364 5757 5570 26 74 0 0 chr11 5027586 5027640 -145755913 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr11 5027872 5027901 -145755652 + AT_rich Low_complexity Low_complexity 1 29 0 1205 194 109 107 chr11 5028234 5028785 -145754768 - MER34B LTR ERV1 -2 563 12 2113 187 5 29 chr11 5028790 5029164 -145754389 - MLT1A1 LTR MaLR 0 365 1 2177 119 0 3 chr11 5029212 5029515 -145754038 - AluSq SINE Alu -11 302 1 2290 110 3 0 chr11 5029597 5029905 -145753648 - AluY SINE Alu -2 309 1 2166 116 0 7 chr11 5030199 5030501 -145753052 - AluSx SINE Alu -12 300 1 730 248 78 53 chr11 5030645 5031056 -145752497 + LTR37A LTR ERV1 6 426 0 2787 161 13 23 chr11 5031112 5031721 -145751832 + pTR5 LTR ERV1 743 1345 -1093 3213 129 234 53 chr11 5031736 5032432 -145751121 + LTR12 LTR ERV1 5 826 0 2535 127 148 7 chr11 5032666 5032782 -145750771 - LTR45B LTR ERV1 0 489 391 2369 74 3 3 chr11 5032782 5033079 -145750474 + AluSp SINE Alu 1 297 -16 2535 127 148 7 chr11 5033079 5033389 -145750164 - LTR45B LTR ERV1 -98 391 3 950 251 64 20 chr11 5033693 5033944 -145749609 - MIR SINE MIR 0 262 1 308 300 0 47 chr11 5033981 5034050 -145749503 + GA-rich Low_complexity Low_complexity 2 73 -71 1945 175 7 0 chr11 5034050 5034358 -145749195 + AluJo SINE Alu 1 310 -2 308 300 0 47 chr11 5034358 5034438 -145749115 + GA-rich Low_complexity Low_complexity 73 144 0 1011 196 44 22 chr11 5035331 5035560 -145747993 - L1ME LINE L1 -347 5819 5586 1685 182 17 7 chr11 5035717 5036019 -145747534 - AluJb SINE Alu -7 305 1 1942 68 129 0 chr11 5037132 5037395 -145746158 - AluSc SINE Alu -12 297 1 182 171 24 0 chr11 5038040 5038081 -145745472 + C-rich Low_complexity Low_complexity 2 43 0 727 265 38 9 chr11 5038615 5038826 -145744727 + MIR SINE MIR 14 230 -32 278 264 19 55 chr11 5039389 5039479 -145744074 - MER5A DNA MER1_type 0 189 90 1122 183 115 0 chr11 5039969 5040248 -145743305 - MER33 DNA MER1_type -13 311 1 1290 235 81 40 chr11 5040315 5040745 -145742808 - L1ME1 LINE L1 -5 6161 5714 2421 57 0 0 chr11 5040891 5041216 -145742337 - AluY SINE Alu 0 325 1 217 359 165 0 chr11 5041687 5041893 -145741660 + MIR SINE MIR 19 258 -4 185 258 81 16 chr11 5042797 5042859 -145740694 + MIR SINE MIR 49 114 -148 2380 87 0 0 chr11 5042989 5043287 -145740266 + AluSx SINE Alu 1 298 -14 641 316 178 9 chr11 5043515 5043672 -145739881 - L2 LINE L2 -2 3311 3182 2078 82 0 11 chr11 5043672 5043951 -145739602 + AluY SINE Alu 1 276 -35 641 316 178 9 chr11 5043951 5044141 -145739412 - L2 LINE L2 -131 3182 2905 2121 127 0 0 chr11 5044187 5044487 -145739066 + AluSx SINE Alu 3 302 -10 1759 119 37 0 chr11 5045519 5045676 -145737877 - AluSx SINE Alu -22 290 117 240 35 0 0 chr11 5045676 5045705 -145737848 + (TG)n Simple_repeat Simple_repeat 2 30 0 1759 119 37 0 chr11 5045705 5045816 -145737737 - AluSx SINE Alu -195 117 12 1142 174 24 14 chr11 5047367 5047579 -145735974 - MER20 DNA MER1_type -5 214 1 2382 48 0 3 chr11 5048435 5048729 -145734824 + AluY SINE Alu 1 293 -18 308 269 167 43 chr11 5049291 5049477 -145734076 - L2 LINE L2 -955 2359 2151 199 313 83 10 chr11 5049532 5049628 -145733925 + L2 LINE L2 3193 3295 -18 433 145 96 0 chr11 5050148 5050231 -145733322 + AluSg/x SINE Alu 217 307 -3 710 72 0 0 chr11 5050361 5050458 -145733095 - AluSg/x SINE Alu -1 311 215 2170 86 0 10 chr11 5051162 5051454 -145732099 + AluSc SINE Alu 1 289 -20 10560 25 15 1 chr11 5151579 5152841 -145630712 + L1P LINE L1 3529 4808 -1338 1031 113 11 13 chr11 5152945 5154420 -145629133 + HSATII Satellite Satellite 1 1471 -1 785 100 0 21 chr11 5154443 5154583 -145628970 + HSATII Satellite Satellite 17 153 -17 911 121 23 14 chr11 5154599 5155087 -145628466 + HSATII Satellite Satellite 1 492 0 980 112 10 12 chr11 5155110 5156315 -145627238 + HSATII Satellite Satellite 1 1202 -27 998 108 8 14 chr11 5156342 5158476 -145625077 + HSATII Satellite Satellite 1 2120 -16 965 129 22 9 chr11 5158491 5158780 -145624773 + HSATII Satellite Satellite 1 292 -1 926 123 10 16 chr11 5158803 5160244 -145623309 + HSATII Satellite Satellite 1 1432 -1 1064 110 11 12 chr11 5160274 5164808 -145618745 + HSATII Satellite Satellite 1 4528 -23 941 120 15 14 chr11 5164823 5165454 -145618099 + HSATII Satellite Satellite 1 631 -137 935 113 6 12 chr11 5165467 5165961 -145617592 + HSATII Satellite Satellite 1 491 -99 977 99 9 16 chr11 5165990 5166564 -145616989 + HSATII Satellite Satellite 1 570 -16 998 104 8 18 chr11 5166602 5167100 -145616453 + HSATII Satellite Satellite 1 493 -23 974 132 12 13 chr11 5167115 5167566 -145615987 + HSATII Satellite Satellite 1 450 -1 959 110 13 12 chr11 5167596 5169348 -145614205 + HSATII Satellite Satellite 1 1754 -17 818 111 21 0 chr11 5169364 5169508 -145614045 + HSATII Satellite Satellite 1 147 -23 965 113 9 13 chr11 5169523 5169976 -145613577 + HSATII Satellite Satellite 1 451 -23 953 125 16 17 chr11 5169998 5171204 -145612349 + HSATII Satellite Satellite 1 1204 -1 998 110 17 12 chr11 5171234 5172967 -145610586 + HSATII Satellite Satellite 1 1741 -4 779 136 4 18 chr11 5172994 5173274 -145610279 + HSATII Satellite Satellite 1 276 -86 941 125 7 18 chr11 5173433 5174258 -145609295 + HSATII Satellite Satellite 1 816 0 998 117 9 14 chr11 5174281 5176010 -145607543 + HSATII Satellite Satellite 1 1720 -1 998 122 12 16 chr11 5176029 5176948 -145606605 + HSATII Satellite Satellite 1 915 -2 1031 115 19 12 chr11 5176979 5178695 -145604858 + HSATII Satellite Satellite 1 1727 -1 980 105 12 12 chr11 5178725 5180004 -145603549 + HSATII Satellite Satellite 1 1279 -23 953 126 15 19 chr11 5180026 5181232 -145602321 + HSATII Satellite Satellite 1 1201 -1 980 113 13 12 chr11 5181262 5182955 -145600598 + HSATII Satellite Satellite 1 1694 -51 932 109 7 15 chr11 5182989 5183582 -145599971 + HSATII Satellite Satellite 1 588 -11 694 149 18 18 chr11 5183615 5183838 -145599715 + HSATII Satellite Satellite 1 223 -94 980 98 6 14 chr11 5183938 5184585 -145598968 + HSATII Satellite Satellite 1 642 -26 977 121 11 16 chr11 5184610 5186831 -145596722 + HSATII Satellite Satellite 1 2210 -1 965 104 12 12 chr11 5186861 5188140 -145595413 + HSATII Satellite Satellite 1 1279 -23 932 117 18 20 chr11 5188162 5188897 -145594656 + HSATII Satellite Satellite 1 733 -1 887 140 9 20 chr11 5188923 5189368 -145594185 + HSATII Satellite Satellite 1 440 -1 980 107 12 12 chr11 5189398 5190674 -145592879 + HSATII Satellite Satellite 1 1276 -26 974 118 18 20 chr11 5190699 5191291 -145592262 + HSATII Satellite Satellite 1 590 0 1012 104 9 13 chr11 5191314 5192453 -145591100 + HSATII Satellite Satellite 1 1134 -23 1019 114 12 13 chr11 5192475 5194539 -145589014 + HSATII Satellite Satellite 1 2063 -1 1031 114 9 15 chr11 5194562 5200227 -145583326 + HSATII Satellite Satellite 1 5633 -23 998 115 11 16 chr11 5200242 5205100 -145578453 + HSATII Satellite Satellite 1 4833 -9 670 147 18 18 chr11 5205131 5205301 -145578252 + HSATII Satellite Satellite 1 170 0 907 122 10 13 chr11 5205326 5206488 -145577065 + HSATII Satellite Satellite 1 1158 -1 998 113 12 12 chr11 5206518 5210890 -145572663 + HSATII Satellite Satellite 1 4370 -8 1031 98 2 15 chr11 5210901 5211519 -145572034 + HSATII Satellite Satellite 1 610 -23 956 119 10 17 chr11 5211543 5212552 -145571001 + HSATII Satellite Satellite 1 1001 -19 980 111 11 11 chr11 5212571 5215411 -145568142 + HSATII Satellite Satellite 1 2840 -23 980 114 14 13 chr11 5215433 5217187 -145566366 + HSATII Satellite Satellite 1 1755 -23 1031 113 10 12 chr11 5217209 5222991 -145560562 + HSATII Satellite Satellite 1 5770 -15 998 118 13 14 chr11 5223005 5225945 -145557608 + HSATII Satellite Satellite 1 2936 -92 986 113 10 16 chr11 5226073 5227611 -145555942 + HSATII Satellite Satellite 1 1529 -9 781 129 18 18 chr11 5227642 5227812 -145555741 + HSATII Satellite Satellite 1 170 0 928 96 13 19 chr11 5227837 5228151 -145555402 + HSATII Satellite Satellite 1 312 -31 998 111 5 0 chr11 5228164 5228376 -145555177 + HSATII Satellite Satellite 1 213 -1 932 127 11 19 chr11 5228399 5229000 -145554553 + HSATII Satellite Satellite 1 596 -1 980 103 12 12 chr11 5229030 5230306 -145553247 + HSATII Satellite Satellite 1 1276 -26 965 137 14 19 chr11 5230331 5230776 -145552777 + HSATII Satellite Satellite 1 442 -1 982 114 12 12 chr11 5230806 5232090 -145551463 + HSATII Satellite Satellite 1 1285 -17 965 108 23 14 chr11 5232106 5232594 -145550959 + HSATII Satellite Satellite 1 492 0 944 121 9 15 chr11 5232617 5234200 -145549353 + HSATII Satellite Satellite 1 1573 -1 989 109 13 8 chr11 5234230 5235345 -145548208 + HSATII Satellite Satellite 1 1120 -8 965 103 7 19 chr11 5235356 5235977 -145547576 + HSATII Satellite Satellite 1 613 -23 932 143 14 19 chr11 5235999 5236444 -145547109 + HSATII Satellite Satellite 1 442 -1 1031 106 10 12 chr11 5236474 5239526 -145544027 + HSATII Satellite Satellite 1 3047 -23 980 117 10 16 chr11 5239539 5242609 -145540944 + HSATII Satellite Satellite 1 3051 -1 977 107 12 13 chr11 5242639 5244868 -145538685 + HSATII Satellite Satellite 1 2227 -27 980 112 14 13 chr11 5244884 5247650 -145535903 + HSATII Satellite Satellite 1 2766 0 965 119 9 17 chr11 5247681 5248517 -145535036 + HSATII Satellite Satellite 1 829 -1 998 114 13 14 chr11 5248547 5250908 -145532645 + HSATII Satellite Satellite 1 2358 0 27 62 0 0 chr11 5300929 5300977 -145482576 + AT_rich Low_complexity Low_complexity 1 48 0 6956 53 9 30 chr11 5300977 5301794 -145481759 - L1PA7 LINE L1 -4 6150 5349 2187 111 7 3 chr11 5301794 5302092 -145481461 + AluSp SINE Alu 1 299 -14 6956 53 9 30 chr11 5302092 5302454 -145481099 - L1PA7 LINE L1 -805 5349 4981 1041 241 38 70 chr11 5303391 5303902 -145479651 - PABL_B LTR ERV1 -21 646 10 3317 232 34 53 chr11 5304114 5305136 -145478417 + L1MB5 LINE L1 3156 4157 -1989 1389 124 16 31 chr11 5305136 5305393 -145478160 + L1MA3 LINE L1 6050 6302 -3 3317 232 34 53 chr11 5305393 5305470 -145478083 + L1MB5 LINE L1 4157 4234 -1912 2319 107 0 0 chr11 5305519 5305828 -145477725 - AluY SINE Alu -2 309 1 1952 200 51 51 chr11 5306246 5306795 -145476758 - L1PB4 LINE L1 -63 6093 5545 23 33 0 0 chr11 5307580 5307610 -145475943 + AT_rich Low_complexity Low_complexity 1 30 0 267 191 52 26 chr11 5309401 5309516 -145474037 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 22 56 0 0 chr11 5309783 5309819 -145473734 + AT_rich Low_complexity Low_complexity 1 36 0 290 317 24 43 chr11 5310375 5310539 -145473014 + L2 LINE L2 1873 2033 -1281 278 276 0 13 chr11 5310582 5310658 -145472895 + L2 LINE L2 2164 2238 -1076 3578 234 23 26 chr11 5311085 5312082 -145471471 + L1MB5 LINE L1 4308 5301 -845 355 286 147 17 chr11 5312165 5312403 -145471150 + L1ME LINE L1 5525 5793 -377 1372 269 25 47 chr11 5312444 5312757 -145470796 + L1M4 LINE L1 2521 2839 -3307 220 20 59 39 chr11 5312757 5312808 -145470745 + (TA)n Simple_repeat Simple_repeat 1 52 0 1372 269 25 47 chr11 5312808 5312922 -145470631 + L1M4 LINE L1 2839 2954 -3192 1865 127 13 43 chr11 5312922 5313221 -145470332 + AluSx SINE Alu 2 291 -21 1372 269 25 47 chr11 5313221 5313521 -145470032 + L1M4 LINE L1 2954 3233 -2913 477 336 34 10 chr11 5313607 5313815 -145469738 + MIR SINE MIR 50 262 0 189 0 0 0 chr11 5314378 5314399 -145469154 + (A)n Simple_repeat Simple_repeat 1 21 0 653 174 16 5 chr11 5316059 5316245 -145467308 + L1MA4 LINE L1 6033 6297 -3 24 32 0 0 chr11 5316299 5316330 -145467223 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 5316680 5316708 -145466845 + AT_rich Low_complexity Low_complexity 1 28 0 2126 104 3 7 chr11 5316822 5317111 -145466442 - AluSc SINE Alu -21 288 1 195 187 165 44 chr11 5317209 5317300 -145466253 - L2 LINE L2 -4 3309 3208 21 0 0 0 chr11 5317553 5317574 -145465979 + AT_rich Low_complexity Low_complexity 1 21 0 209 321 71 9 chr11 5318369 5318481 -145465072 + MIR SINE MIR 137 255 -7 320 243 14 0 chr11 5319812 5319886 -145463667 - L1M4 LINE L1 -1983 4399 4325 * 336 229 16 16 chr11 5319884 5320006 -145463547 - L1M4 LINE L1 -3951 2433 2312 978 217 46 132 chr11 5320011 5320488 -145463065 + L1MB5 LINE L1 5326 5753 -431 2369 172 36 5 chr11 5320488 5320931 -145462622 - MSTB2 LTR MaLR 0 457 1 978 217 46 132 chr11 5320931 5320993 -145462560 + L1MB5 LINE L1 5753 5819 -365 604 220 16 44 chr11 5321227 5321409 -145462144 + L1MB5 LINE L1 5815 5991 -183 2399 82 7 0 chr11 5321587 5321892 -145461661 + AluSp SINE Alu 1 307 -6 2159 104 17 0 chr11 5322220 5322517 -145461036 + AluSq SINE Alu 1 302 -11 1085 177 14 50 chr11 5322678 5322898 -145460655 - AluJo SINE Alu -15 297 86 1899 129 26 26 chr11 5323469 5323779 -145459774 + AluSg SINE Alu 1 310 0 180 0 0 0 chr11 5324548 5324568 -145458985 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 294 282 46 8 chr11 5324628 5324769 -145458784 - MIR SINE MIR -64 144 13 21 0 0 0 chr11 5324860 5324881 -145458672 + AT_rich Low_complexity Low_complexity 1 21 0 256 352 37 0 chr11 5326627 5326735 -145456818 + MIR SINE MIR 18 129 -133 2329 103 3 0 chr11 5326736 5327048 -145456505 - AluSq SINE Alu 0 313 1 1571 111 0 8 chr11 5327095 5327339 -145456214 + L1MA6 LINE L1 6059 6300 0 28 29 0 0 chr11 5327679 5327714 -145455839 + AT_rich Low_complexity Low_complexity 1 35 0 1708 155 22 4 chr11 5327807 5328120 -145455433 - AluJb SINE Alu 0 318 1 381 22 0 0 chr11 5329880 5329926 -145453627 + (T)n Simple_repeat Simple_repeat 1 46 0 34 24 0 0 chr11 5329930 5329971 -145453582 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 5330205 5330226 -145453327 + AT_rich Low_complexity Low_complexity 1 21 0 928 180 15 34 chr11 5330355 5330561 -145452992 + L1MB3 LINE L1 5918 6119 -64 2322 66 3 0 chr11 5331006 5331295 -145452258 - AluY SINE Alu -21 290 1 964 295 102 24 chr11 5331536 5331781 -145451772 + L1ME LINE L1 48 273 -5797 2326 89 0 0 chr11 5331781 5332074 -145451479 + AluSg SINE Alu 1 293 -17 964 295 102 24 chr11 5332074 5332330 -145451223 + L1ME LINE L1 273 588 -5482 1152 159 15 5 chr11 5332703 5332898 -145450655 - LTR1 LTR ERV1 0 785 589 3028 48 3 0 chr11 5332898 5333271 -145450282 - L1PA6 LINE L1 -7 6147 5774 606 41 0 0 chr11 5333271 5333344 -145450209 + L1P2 LINE L1 5620 5692 -462 400 245 14 35 chr11 5333373 5333516 -145450037 + L1ME LINE L1 49 188 -5882 2544 181 66 34 chr11 5333518 5334075 -145449478 - LTR1 LTR ERV1 -203 582 8 2231 102 3 16 chr11 5335618 5335932 -145447621 - AluSx SINE Alu 0 312 3 614 272 82 47 chr11 5335977 5336404 -145447149 - L1M4 LINE L1 -2040 4106 3665 1378 186 42 0 chr11 5336915 5337222 -145446331 + MER33 DNA MER1_type 5 324 0 296 315 87 75 chr11 5338315 5338731 -145444822 - MLT1J2 LTR MaLR -10 440 20 2249 206 93 8 chr11 5339086 5339751 -145443802 - L1M4 LINE L1 -3108 3038 2317 2275 103 3 0 chr11 5339763 5340074 -145443479 - AluSx SINE Alu 0 312 1 2486 25 0 59 chr11 5340109 5340432 -145443121 - AluY SINE Alu -7 304 1 402 152 3 2 chr11 5340447 5340516 -145443037 + AluSp/q SINE Alu 236 296 -7 24 0 0 0 chr11 5340609 5340633 -145442920 + AT_rich Low_complexity Low_complexity 1 24 0 2202 110 10 0 chr11 5340919 5341218 -145442335 - AluSq SINE Alu -11 302 1 24 0 0 0 chr11 5341218 5341242 -145442311 + AT_rich Low_complexity Low_complexity 1 24 0 571 330 13 51 chr11 5341616 5341668 -145441885 - MIR SINE MIR -23 239 187 2299 96 0 3 chr11 5341668 5341971 -145441582 - AluSq SINE Alu -11 302 1 571 330 13 51 chr11 5341971 5342154 -145441399 - MIR SINE MIR -75 187 13 712 254 30 6 chr11 5342186 5342351 -145441202 + MER58A DNA MER1_type 24 192 -32 1689 74 0 0 chr11 5342351 5342576 -145440977 + AluSg/x SINE Alu 83 307 0 1082 232 46 127 chr11 5343231 5343536 -145440017 - L1MCa LINE L1 -5571 651 323 2346 82 16 0 chr11 5343536 5343840 -145439713 - AluSx SINE Alu 0 312 4 1082 232 46 127 chr11 5343840 5344011 -145439542 - L1MCa LINE L1 -5899 323 141 2136 87 0 75 chr11 5344011 5344344 -145439209 - AluSg SINE Alu -2 308 1 1082 232 46 127 chr11 5344344 5344436 -145439117 - L1MCa LINE L1 -6081 141 43 667 131 0 10 chr11 5345457 5345556 -145437997 + MER4A LTR ERV1 1 98 -566 1753 153 179 20 chr11 5345556 5345903 -145437650 + MER4A LTR ERV1 261 662 -2 2327 100 0 0 chr11 5346007 5346316 -145437237 + AluY SINE Alu 1 309 -2 1164 121 29 0 chr11 5346316 5346489 -145437064 + AluSp SINE Alu 134 311 -2 1511 115 71 21 chr11 5346616 5346941 -145436612 - MER4A LTR ERV1 0 655 252 743 117 8 16 chr11 5346963 5347091 -145436462 - MER4A LTR ERV1 -537 127 1 387 64 0 291 chr11 5347146 5347199 -145436354 + MADE1 DNA Mariner 1 8 -72 2314 73 0 44 chr11 5347199 5347514 -145436039 - AluSg SINE Alu -1 309 9 387 64 0 291 chr11 5347514 5347570 -145435983 + MADE1 DNA Mariner 8 78 -2 219 292 0 0 chr11 5348022 5348070 -145435483 + MER5B DNA MER1_type 2 49 -129 443 254 124 6 chr11 5348085 5348262 -145435291 - L1ME1 LINE L1 -6 6160 5963 1017 190 46 32 chr11 5348437 5348653 -145434900 - MER20 DNA MER1_type 0 219 1 195 42 0 0 chr11 5349219 5349243 -145434310 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 259 86 91 chr11 5350391 5350442 -145433111 - L2 LINE L2 -412 2902 2852 2110 121 0 7 chr11 5350442 5350740 -145432813 + AluSq SINE Alu 3 298 -15 351 259 86 91 chr11 5350740 5350942 -145432611 - L2 LINE L2 -462 2852 2649 2180 93 7 14 chr11 5350942 5351232 -145432321 + AluSq SINE Alu 5 292 -21 351 259 86 91 chr11 5351232 5351328 -145432225 - L2 LINE L2 -665 2649 2554 1635 225 29 44 chr11 5352528 5352837 -145430716 - MLT1C LTR MaLR 0 467 164 2386 98 0 0 chr11 5352837 5353134 -145430419 + AluSx SINE Alu 1 297 -15 1635 225 29 44 chr11 5353134 5353233 -145430320 - MLT1C LTR MaLR -303 164 65 2427 62 3 0 chr11 5353544 5353848 -145429705 - AluY SINE Alu -6 305 1 373 337 143 10 chr11 5355639 5355939 -145427614 - L2 LINE L2 -50 3263 2924 718 130 35 0 chr11 5356566 5356681 -145426872 - AluSg1 SINE Alu -189 120 2 494 62 0 16 chr11 5356709 5356773 -145426780 - LTR7 LTR ERV1 -42 408 346 351 0 0 0 chr11 5357994 5358036 -145425517 + (CA)n Simple_repeat Simple_repeat 1 81 0 351 0 0 0 chr11 5358036 5358075 -145425478 + (CA)n Simple_repeat Simple_repeat 2 40 0 2328 80 3 7 chr11 5358798 5359099 -145424454 - AluY SINE Alu -11 300 1 1581 223 41 8 chr11 5359382 5359750 -145423803 + L1MB7 LINE L1 5447 5826 -358 7723 24 0 76 chr11 5359854 5361514 -145422039 + L1PA3 LINE L1 4573 6155 0 1858 216 31 52 chr11 5361608 5362151 -145421402 - L1MA9 LINE L1 -30 6282 5751 39 22 0 0 chr11 5362926 5362972 -145420581 + AT_rich Low_complexity Low_complexity 1 46 0 207 114 0 0 chr11 5364609 5364644 -145418909 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 5364894 5364916 -145418637 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr11 5365703 5365730 -145417823 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 2982 41 0 3 chr11 5365731 5366069 -145417484 - L1PA3 LINE L1 -3 6152 5816 615 251 53 112 chr11 5366630 5367004 -145416549 - MLT2C1 LTR ERVL -2 395 44 * 621 196 67 45 chr11 5366840 5367019 -145416534 - MLT1E3 LTR MaLR -393 231 49 428 316 22 7 chr11 5367024 5367163 -145416390 - MLT2F LTR ERVL -522 141 1 617 324 16 5 chr11 5367487 5367672 -145415881 + MER5A DNA MER1_type 3 189 0 228 200 0 0 chr11 5370032 5370092 -145413461 + (TATG)n Simple_repeat Simple_repeat 2 61 0 304 237 69 92 chr11 5370163 5370294 -145413259 - MIR SINE MIR -13 249 122 1738 60 9 0 chr11 5372824 5373040 -145410513 - L1PA5 LINE L1 -5 6149 5932 2383 81 7 3 chr11 5373046 5373353 -145410200 - AluY SINE Alu -3 308 1 2499 70 0 0 chr11 5374123 5374423 -145409130 - AluY SINE Alu -11 300 1 456 111 0 14 chr11 5375574 5375646 -145407907 - L1P LINE L1 -1268 4878 4808 2299 85 3 10 chr11 5376257 5376562 -145406991 - AluSq SINE Alu -10 303 1 3932 213 24 41 chr11 5376849 5377680 -145405873 + L1M2 LINE L1 1290 2101 -4748 2344 103 0 3 chr11 5377680 5377991 -145405562 + AluSg SINE Alu 1 310 0 3932 213 24 41 chr11 5377991 5378197 -145405356 + L1M2 LINE L1 2101 2309 -4540 1713 151 5 21 chr11 5378193 5378319 -145405234 + L1PA15 LINE L1 4366 4492 -1673 * 2466 90 0 3 chr11 5378319 5378630 -145404923 + AluY SINE Alu 1 310 -1 1713 151 5 21 chr11 5378630 5380221 -145403332 + L1PA15 LINE L1 4492 6158 -7 4648 234 55 7 chr11 5380224 5381228 -145402325 + ERVL LTR ERVL 2877 3928 -1836 * 5333 204 22 2 chr11 5381226 5382208 -145401345 + ERVL LTR ERVL 4325 5326 -438 2366 63 0 0 chr11 5382928 5383244 -145400309 - AluY SINE Alu 0 316 1 2214 118 0 0 chr11 5383648 5383935 -145399618 + AluSg SINE Alu 1 287 -23 288 303 58 10 chr11 5384576 5384730 -145398823 - MIR SINE MIR -64 144 13 330 161 42 8 chr11 5385353 5385471 -145398082 + (TA)n Simple_repeat Simple_repeat 1 122 0 301 175 10 136 chr11 5385483 5385586 -145397967 - L1MC4 LINE L1 -1339 6703 6614 2092 100 0 0 chr11 5386060 5386331 -145397222 - AluSq SINE Alu -12 301 31 1298 168 45 4 chr11 5386457 5386701 -145396852 - MSTB LTR MaLR -172 254 1 671 220 42 37 chr11 5386703 5386894 -145396659 + L1MA9 LINE L1 6083 6274 -38 199 362 116 15 chr11 5387097 5387296 -145396257 - MIR SINE MIR -26 236 18 23 54 0 0 chr11 5388333 5388370 -145395183 + AT_rich Low_complexity Low_complexity 1 37 0 267 326 71 14 chr11 5389185 5389326 -145394227 + MIR3 SINE MIR 7 155 -53 253 272 229 68 chr11 5390439 5390582 -145392971 - MLT1K LTR MaLR 0 588 469 1740 149 83 0 chr11 5390582 5390858 -145392695 + AluSx SINE Alu 1 299 -13 253 272 229 68 chr11 5390858 5391037 -145392516 - MLT1K LTR MaLR -119 469 214 2318 60 53 27 chr11 5391037 5391336 -145392217 - AluY SINE Alu -4 307 1 1476 191 67 0 chr11 5391831 5392098 -145391455 + AluJb SINE Alu 1 285 -27 2470 262 67 72 chr11 5392132 5393074 -145390479 + L1M4c LINE L1 818 1763 -4619 2070 137 3 0 chr11 5393074 5393374 -145390179 - AluSx SINE Alu -3 309 9 2470 262 67 72 chr11 5393374 5395065 -145388488 + L1M4c LINE L1 1763 3544 -2838 1544 251 33 17 chr11 5395107 5395566 -145387987 + L1M3e LINE L1 1 466 -6564 241 104 292 0 chr11 5395584 5395632 -145387921 + L1M4 LINE L1 4914 4975 -1171 * 969 195 37 18 chr11 5395631 5395903 -145387650 + L1MA8 LINE L1 5858 6134 -157 1443 79 0 0 chr11 5395903 5396081 -145387472 - AluY SINE Alu -15 296 119 590 180 0 0 chr11 5396088 5396188 -145387365 - MER45A DNA AcHobo -16 162 63 376 312 134 18 chr11 5396257 5396533 -145387020 - LTR16C LTR ERVL -25 466 159 219 154 0 0 chr11 5396533 5396572 -145386981 + T-rich Low_complexity Low_complexity 1 39 0 4751 15 2 0 chr11 5396573 5397114 -145386439 - L1PA2 LINE L1 -3 6152 5611 8777 27 3 0 chr11 5397114 5398435 -145385118 + L1PA2 LINE L1 4280 5604 -551 758 62 0 174 chr11 5398436 5398597 -145384956 - AluSq/x SINE Alu -180 133 1 328 336 19 0 chr11 5398597 5398704 -145384849 + L1M4c LINE L1 3771 3879 -2503 332 355 123 0 chr11 5401467 5401605 -145381948 + L2 LINE L2 2909 3063 -250 4043 68 20 31 chr11 5402090 5402669 -145380884 - PABL_A LTR ERV1 0 660 87 2219 108 0 0 chr11 5402669 5402965 -145380588 - AluSg SINE Alu -14 296 1 4043 68 20 31 chr11 5402965 5402991 -145380562 - PABL_A LTR ERV1 -573 87 62 1215 133 12 0 chr11 5402993 5403166 -145380387 + AluSq SINE Alu 4 178 -135 5062 110 207 102 chr11 5403630 5405037 -145378516 + pTR5 LTR ERV1 741 2295 -143 2333 54 48 0 chr11 5406459 5406574 -145376979 + AluY SINE Alu 1 109 -202 288 0 0 0 chr11 5406574 5406606 -145376947 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2333 54 48 0 chr11 5406606 5406785 -145376768 + AluY SINE Alu 109 309 -2 327 310 85 99 chr11 5407431 5407552 -145376001 + L2 LINE L2 1626 1747 -1567 1477 156 35 44 chr11 5407552 5407891 -145375662 - L1MA7 LINE L1 0 6291 5956 327 310 85 99 chr11 5407891 5408620 -145374933 + L2 LINE L2 1747 2464 -850 323 325 62 58 chr11 5409110 5409402 -145374151 + L2 LINE L2 3016 3308 -5 514 147 68 0 chr11 5411453 5411583 -145371970 + L1MB1 LINE L1 6008 6161 -28 183 139 0 0 chr11 5413427 5413463 -145370090 + (CA)n Simple_repeat Simple_repeat 1 36 0 492 317 87 48 chr11 5413733 5414216 -145369337 + LTR33 LTR ERVL 16 517 -4 1963 152 0 41 chr11 5414909 5415225 -145368328 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr11 5415305 5415327 -145368226 + AT_rich Low_complexity Low_complexity 1 22 0 1031 329 24 12 chr11 5415361 5415787 -145367766 + LTR16B LTR ERVL 34 464 0 1613 167 9 43 chr11 5416169 5416492 -145367061 + AluJb SINE Alu 1 312 0 1321 309 51 21 chr11 5416921 5417533 -145366020 + HERV16 LTR ERVL 947 1576 -3420 10072 225 23 53 chr11 5417597 5420277 -145363276 + L1P5 LINE L1 1973 4424 -2435 2184 118 0 25 chr11 5420277 5420591 -145362962 + AluSx SINE Alu 1 306 -6 10072 225 23 53 chr11 5420591 5422596 -145360957 + L1P5 LINE L1 4424 6488 -371 870 145 15 0 chr11 5422596 5422727 -145360826 + AluSq/x SINE Alu 1 133 -179 189 0 0 0 chr11 5422727 5422748 -145360805 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 5422943 5422966 -145360587 + AT_rich Low_complexity Low_complexity 1 23 0 375 257 0 0 chr11 5423175 5423288 -145360265 + L1P5 LINE L1 5668 5780 -376 574 214 5 102 chr11 5423293 5423499 -145360054 + AluJb SINE Alu 1 186 -126 350 242 0 40 chr11 5423549 5423676 -145359877 + FLAM_A SINE Alu 25 147 0 827 176 53 88 chr11 5423679 5423941 -145359612 + L1MA8 LINE L1 6035 6287 -4 22 0 0 0 chr11 5424169 5424191 -145359362 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 5424737 5424760 -145358793 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 5424901 5424925 -145358628 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr11 5425021 5425046 -145358507 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr11 5426097 5426120 -145357433 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 5427596 5427617 -145355936 + AT_rich Low_complexity Low_complexity 1 21 0 549 89 13 0 chr11 5427835 5427914 -145355639 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr11 5427924 5427952 -145355601 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr11 5427968 5428004 -145355549 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 224 349 82 41 chr11 5428438 5428584 -145354969 + L2 LINE L2 2962 3113 -159 853 270 89 32 chr11 5429029 5429659 -145353894 - L1ME3A LINE L1 -58 6112 5451 1154 99 22 63 chr11 5429953 5430048 -145353505 - L1MA3 LINE L1 0 6305 6208 2153 118 17 0 chr11 5430048 5430336 -145353217 + AluSx SINE Alu 1 293 -19 1154 99 22 63 chr11 5430336 5430462 -145353091 - L1MA3 LINE L1 -97 6208 6093 320 232 19 39 chr11 5433168 5433306 -145350247 + (TAA)n Simple_repeat Simple_repeat 3 139 -15 1736 184 0 0 chr11 5433306 5433610 -145349943 + AluSx SINE Alu 9 312 0 320 232 19 39 chr11 5433610 5433626 -145349927 + (TAA)n Simple_repeat Simple_repeat 139 154 0 2812 19 0 0 chr11 5433829 5434139 -145349414 + AluYb8 SINE Alu 1 310 -8 771 284 23 31 chr11 5434675 5434932 -145348621 - MLT2D LTR ERVL 0 414 160 1726 159 0 45 chr11 5435191 5435500 -145348053 - AluJb SINE Alu -9 303 9 26 0 0 0 chr11 5435926 5435952 -145347601 + AT_rich Low_complexity Low_complexity 1 26 0 2903 157 14 6 chr11 5436778 5437287 -145346266 - LTR10D LTR ERV1 0 513 1 1911 180 91 28 chr11 5437738 5438199 -145345354 - LTR2B LTR ERV1 0 490 1 207 0 0 0 chr11 5438617 5438640 -145344913 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 703 146 0 90 chr11 5439268 5439412 -145344141 + FLAM_C SINE Alu 1 131 -2 1984 119 10 35 chr11 5439481 5439791 -145343762 - AluSx SINE Alu -10 302 1 21 36 0 0 chr11 5439794 5439822 -145343731 + AT_rich Low_complexity Low_complexity 1 28 0 2305 50 16 10 chr11 5440041 5440344 -145343209 + AluY SINE Alu 1 305 -6 1698 191 91 14 chr11 5440370 5440790 -145342763 - MLT1C LTR MaLR 0 467 16 530 331 134 9 chr11 5441612 5441956 -145341597 - L2 LINE L2 -1 3312 2926 389 229 131 56 chr11 5442018 5442323 -145341230 + L1MB7 LINE L1 5850 6177 -1 256 409 0 0 chr11 5442337 5442430 -145341123 - L2 LINE L2 -319 2994 2902 2210 95 0 7 chr11 5444296 5444607 -145338946 - AluSc SINE Alu 0 309 1 1813 255 35 52 chr11 5445405 5445847 -145337706 - L1MB7 LINE L1 -104 6080 5653 2947 6 0 0 chr11 5445847 5446165 -145337388 + AluYb8 SINE Alu 1 318 0 1813 255 35 52 chr11 5446165 5446432 -145337121 - L1MB7 LINE L1 -531 5653 5383 1288 221 20 57 chr11 5446476 5446712 -145336841 - L1MB7 LINE L1 -1741 4405 4189 1719 157 40 13 chr11 5446712 5447012 -145336541 - AluSx SINE Alu -4 308 1 1288 221 20 57 chr11 5447012 5447178 -145336375 - L1MB7 LINE L1 -1957 4189 4018 270 0 0 0 chr11 5447182 5447212 -145336341 + (T)n Simple_repeat Simple_repeat 1 30 0 1563 112 65 4 chr11 5447243 5447475 -145336078 - AluSx SINE Alu -14 298 53 1747 225 27 9 chr11 5447478 5447923 -145335630 - L1MB7 LINE L1 -2156 3990 3538 479 296 27 0 chr11 5447988 5448174 -145335379 - L1MB7 LINE L1 -3317 2829 2639 346 235 10 29 chr11 5448224 5448326 -145335227 - MLT1D LTR MaLR -8 497 398 760 190 95 28 chr11 5448327 5448506 -145335047 + MLT1C LTR MaLR 276 466 -1 379 157 26 85 chr11 5448508 5448661 -145334892 - L1MCa LINE L1 -4030 2185 2042 189 153 76 7 chr11 5448731 5448875 -145334678 + (TA)n Simple_repeat Simple_repeat 1 154 0 22 48 0 48 chr11 5448892 5448954 -145334599 + AT_rich Low_complexity Low_complexity 1 59 0 284 202 31 23 chr11 5448970 5449099 -145334454 + (TA)n Simple_repeat Simple_repeat 1 130 0 825 207 103 16 chr11 5449103 5449447 -145334106 - L1MCa LINE L1 -4199 2016 1706 229 220 20 90 chr11 5449548 5449648 -145333905 - L1M4 LINE L1 -1858 4288 4196 2775 120 21 14 chr11 5449661 5449981 -145333572 - L1PA16 LINE L1 -12 6154 5829 2422 84 0 0 chr11 5449981 5450289 -145333264 - AluY SINE Alu -1 310 3 2775 120 21 14 chr11 5450289 5450400 -145333153 - L1PA16 LINE L1 -337 5829 5720 2485 112 8 3 chr11 5450400 5450784 -145332769 + L1P4 LINE L1 5292 5677 -489 729 252 14 28 chr11 5450818 5451100 -145332453 - L1M4 LINE L1 -1948 4198 3921 * 780 235 63 48 chr11 5451086 5451418 -145332135 - L1M4 LINE L1 -847 5299 4963 226 362 60 60 chr11 5451587 5451888 -145331665 + MLT1K LTR MaLR 4 304 -284 602 192 57 6 chr11 5452990 5453167 -145330386 - MER53 DNA DNA -3 186 1 2078 119 0 7 chr11 5454134 5454450 -145329103 + AluSx SINE Alu 1 314 0 21 57 0 0 chr11 5454453 5454488 -145329065 + AT_rich Low_complexity Low_complexity 1 35 0 1356 109 0 0 chr11 5455324 5455507 -145328046 - AluSp SINE Alu -11 302 120 1328 226 147 22 chr11 5456384 5456799 -145326754 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr11 5456869 5456890 -145326663 + AT_rich Low_complexity Low_complexity 1 21 0 246 355 23 17 chr11 5457052 5457224 -145326329 + MIR SINE MIR 40 212 -50 25 0 0 0 chr11 5457231 5457256 -145326297 + AT_rich Low_complexity Low_complexity 1 25 0 1455 194 126 55 chr11 5457643 5458065 -145325488 - MLT2B1 LTR ERVL 0 520 69 361 214 90 0 chr11 5458082 5458171 -145325382 - MLT2B1 LTR ERVL -416 99 3 214 205 26 0 chr11 5458278 5458356 -145325197 + (TA)n Simple_repeat Simple_repeat 2 81 0 2132 86 0 83 chr11 5458415 5458741 -145324812 - AluSq SINE Alu -14 299 1 1068 255 28 61 chr11 5459507 5460049 -145323504 - MLT1E1 LTR MaLR 0 593 23 3616 35 0 0 chr11 5460726 5461187 -145322366 - L1P LINE L1 -2802 3344 2884 * 10161 42 1 0 chr11 5461186 5462431 -145321122 + L1P LINE L1 3335 4580 -1566 3832 87 14 40 chr11 5462686 5463305 -145320248 - L1MA2 LINE L1 0 6304 5702 322 318 19 0 chr11 5463503 5463610 -145319943 + L1MC4 LINE L1 6608 6716 -1326 1440 254 42 26 chr11 5463751 5464181 -145319372 + L1MB5 LINE L1 5690 6126 -48 2829 104 42 82 chr11 5464192 5464768 -145318785 - L1MA1 LINE L1 0 6302 5750 786 50 0 20 chr11 5464770 5464871 -145318682 + L1MA1 LINE L1 5651 5749 -553 261 186 0 14 chr11 5464871 5464941 -145318612 + L1MB3 LINE L1 6115 6183 0 459 324 7 0 chr11 5465066 5465205 -145318348 - Charlie1 DNA MER1_type -2621 140 1 2328 107 0 3 chr11 5465633 5465941 -145317612 - AluSq SINE Alu -6 307 1 236 210 16 0 chr11 5466858 5466920 -145316633 + (TGAA)n Simple_repeat Simple_repeat 3 65 0 1156 155 117 29 chr11 5467246 5467485 -145316068 - L1MA4 LINE L1 -388 5912 5653 2062 159 26 5 chr11 5467486 5467875 -145315678 + L1MA4 LINE L1 5899 6295 -5 236 372 53 21 chr11 5469383 5469571 -145313982 - MIR SINE MIR -13 249 56 282 287 70 17 chr11 5469740 5469855 -145313698 + MIR SINE MIR 53 173 -89 953 202 33 24 chr11 5471002 5471333 -145312220 + L1MA9 LINE L1 3125 3458 -2688 * 1161 166 5 0 chr11 5471308 5471519 -145312034 + L1MA9 LINE L1 4803 5014 -1132 27 0 0 0 chr11 5472797 5472824 -145310729 + AT_rich Low_complexity Low_complexity 1 27 0 2019 118 14 0 chr11 5475132 5475429 -145308124 + AluSx SINE Alu 1 301 -11 1699 199 37 20 chr11 5475624 5476026 -145307527 + L1MA9 LINE L1 5743 6151 -161 34 24 0 0 chr11 5476192 5476233 -145307320 + AT_rich Low_complexity Low_complexity 1 41 0 2070 89 40 6 chr11 5476237 5476562 -145306991 - L1MA1 LINE L1 0 6302 5967 1069 292 18 12 chr11 5477451 5477783 -145305770 + L1M4 LINE L1 361 694 -5848 1374 214 37 29 chr11 5477931 5478282 -145305271 + L1M4 LINE L1 4477 4830 -1814 1312 274 19 7 chr11 5478287 5478717 -145304836 + L1M4 LINE L1 4965 5399 -1245 264 108 0 0 chr11 5478729 5478766 -145304787 + L1MA7 LINE L1 6072 6108 -183 * 7392 258 18 6 chr11 5478751 5480850 -145302703 - L1 LINE L1 -1810 4336 2213 2785 206 186 12 chr11 5480849 5481739 -145301814 + L1 LINE L1 4307 5351 -795 * 661 44 2 1 chr11 5481839 5481929 -145301624 - L1MC/D LINE L1 -356 5799 5707 392 245 27 27 chr11 5482463 5482610 -145300943 - L1ME LINE L1 -381 5789 5643 23 0 0 0 chr11 5484629 5484652 -145298901 + AT_rich Low_complexity Low_complexity 1 23 0 1143 176 42 0 chr11 5485872 5486138 -145297415 - L1ME LINE L1 -743 5403 5164 1110 86 0 6 chr11 5486145 5486307 -145297246 + L1PA12 LINE L1 6008 6168 0 301 289 74 33 chr11 5486939 5487181 -145296372 - L1ME LINE L1 -1818 4328 4077 25 0 0 0 chr11 5487321 5487346 -145296207 + AT_rich Low_complexity Low_complexity 1 25 0 289 269 53 30 chr11 5487346 5487410 -145296143 + L1M4 LINE L1 4323 4384 -1762 5745 25 1 6 chr11 5487410 5488132 -145295421 + L1PA4 LINE L1 5463 6181 0 289 269 53 30 chr11 5488132 5488330 -145295223 + L1M4 LINE L1 4384 4592 -1554 310 356 56 0 chr11 5488422 5488582 -145294971 + L1M4 LINE L1 4698 4866 -1280 474 259 0 0 chr11 5488719 5488827 -145294726 + L1M2a LINE L1 8 115 -7053 3837 184 45 21 chr11 5488836 5489926 -145293627 + L1M2a LINE L1 1524 2655 -4513 382 378 22 6 chr11 5490000 5490180 -145293373 - L2 LINE L2 -2926 388 206 216 211 19 0 chr11 5492081 5492133 -145291420 + CT-rich Low_complexity Low_complexity 2 54 0 259 283 106 35 chr11 5492873 5493071 -145290482 - MIR SINE MIR 0 262 51 268 141 14 14 chr11 5494096 5494167 -145289386 + CT-rich Low_complexity Low_complexity 2 72 0 859 245 102 32 chr11 5494906 5495351 -145288202 - Charlie1b DNA MER1_type -44 479 6 3189 68 13 44 chr11 5497221 5497625 -145285928 + MLT2A1 LTR ERVL 1 391 -53 225 0 0 0 chr11 5497625 5497650 -145285903 + (CA)n Simple_repeat Simple_repeat 2 26 0 3189 68 13 44 chr11 5497650 5497703 -145285850 + MLT2A1 LTR ERVL 391 444 0 206 363 55 11 chr11 5498437 5498528 -145285025 - MIR3 SINE MIR -3 205 111 2874 149 114 5 chr11 5499269 5499840 -145283713 - LTR24C LTR ERV1 0 635 3 1125 240 10 13 chr11 5500291 5500578 -145282975 - L1P3 LINE L1 -561 5611 5322 260 260 39 13 chr11 5500743 5500820 -145282733 + Tigger5 DNA MER2_type 1 79 -2244 1409 67 0 10 chr11 5501150 5501344 -145282209 + L1M1 LINE L1 5625 5816 -486 371 180 0 0 chr11 5501344 5501405 -145282148 + Tigger5 DNA MER2_type 2262 2322 -1 27 49 0 0 chr11 5502832 5502873 -145280680 + AT_rich Low_complexity Low_complexity 1 41 0 1294 112 28 28 chr11 5502877 5502974 -145280579 - L1PA16 LINE L1 -9 6157 6061 1661 143 62 54 chr11 5502974 5503346 -145280207 + THE1C LTR MaLR 1 375 0 1294 112 28 28 chr11 5503346 5503462 -145280091 - L1PA16 LINE L1 -104 6062 5944 199 309 15 15 chr11 5503975 5504043 -145279510 - MIR SINE MIR -63 145 78 580 306 53 51 chr11 5505079 5505474 -145278079 + LTR16A1 LTR ERVL 62 457 0 932 211 22 0 chr11 5505625 5505810 -145277743 - MER5A DNA MER1_type 0 189 1 1001 246 0 5 chr11 5506170 5506385 -145277168 - MER58A DNA MER1_type 0 224 11 1871 151 47 0 chr11 5507199 5507497 -145276056 + AluSx SINE Alu 1 312 0 1895 81 0 67 chr11 5507574 5507857 -145275696 + AluY SINE Alu 36 299 -12 265 252 87 26 chr11 5508244 5508359 -145275194 + MIR SINE MIR 113 234 -28 4489 184 27 30 chr11 5508554 5509294 -145274259 - L1PA16 LINE L1 -16 6150 5409 1725 180 14 0 chr11 5509294 5509577 -145273976 - AluJb SINE Alu -25 287 1 4489 184 27 30 chr11 5509577 5510714 -145272839 - L1PA16 LINE L1 -757 5409 4285 25 0 0 0 chr11 5511623 5511648 -145271905 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr11 5511794 5511822 -145271731 + (CA)n Simple_repeat Simple_repeat 2 29 0 3548 212 14 16 chr11 5513691 5514987 -145268566 + L1MB3 LINE L1 4498 5787 -396 322 173 12 25 chr11 5514989 5515070 -145268483 + (TATG)n Simple_repeat Simple_repeat 3 82 0 2078 162 15 8 chr11 5515074 5515469 -145268084 + L1MB3 LINE L1 5786 6183 0 1623 152 82 0 chr11 5515654 5515924 -145267629 - AluSg SINE Alu -18 292 1 406 293 75 40 chr11 5516815 5517337 -145266216 + L1ME4a LINE L1 5582 6121 0 300 164 119 0 chr11 5520497 5520564 -145262989 + L1PA15 LINE L1 6089 6163 -2 267 255 39 20 chr11 5520840 5520942 -145262611 - Charlie8 DNA MER1_type -2231 186 83 765 250 59 0 chr11 5521030 5521234 -145262319 + L1PA16 LINE L1 5951 6166 0 22 0 0 0 chr11 5521306 5521328 -145262225 + AT_rich Low_complexity Low_complexity 1 22 0 305 339 35 29 chr11 5521631 5521802 -145261751 + MIR SINE MIR 91 262 0 1849 171 3 7 chr11 5521912 5522216 -145261337 - AluSx SINE Alu -9 303 1 197 348 22 11 chr11 5522670 5522759 -145260794 - L2 LINE L2 -449 2865 2776 324 48 0 0 chr11 5523076 5523118 -145260435 + (CA)n Simple_repeat Simple_repeat 1 42 0 684 220 28 98 chr11 5523192 5523406 -145260147 - MIR SINE MIR -62 200 2 2277 91 109 0 chr11 5523560 5523900 -145259653 + MER51B LTR ERV1 1 377 0 26 0 0 0 chr11 5524205 5524231 -145259322 + AT_rich Low_complexity Low_complexity 1 26 0 1847 145 19 26 chr11 5524288 5524453 -145259100 + AluSx SINE Alu 1 166 -146 2263 142 28 14 chr11 5524453 5524812 -145258741 + THE1B LTR MaLR 1 364 0 11646 87 10 3 chr11 5524812 5526380 -145257173 + THE1B-int LTR MaLR 1 1580 0 2315 124 42 14 chr11 5526380 5526734 -145256819 + THE1B LTR MaLR 1 364 0 1847 145 19 26 chr11 5526734 5526876 -145256677 + AluSx SINE Alu 163 308 -4 200 400 0 0 chr11 5527018 5527098 -145256455 - L2 LINE L2 -246 3067 2988 2362 172 24 11 chr11 5527189 5527654 -145255899 - L1MA8 LINE L1 -347 5944 5474 209 192 39 0 chr11 5528195 5528247 -145255306 + A-rich Low_complexity Low_complexity 5 58 0 4840 31 0 3 chr11 5528635 5529213 -145254340 + L1PA4 LINE L1 5580 6155 0 412 75 0 0 chr11 5529214 5529267 -145254286 + L1PA10 LINE L1 5818 5870 -298 22 0 0 0 chr11 5529267 5529289 -145254264 + AT_rich Low_complexity Low_complexity 1 22 0 783 117 0 66 chr11 5529553 5529690 -145253863 - MER1B DNA MER1_type 0 339 212 3618 107 15 0 chr11 5529700 5530307 -145253246 - L1PBa LINE L1 -5015 1848 1085 3926 148 96 3 chr11 5530324 5531068 -145252485 - L1PBa LINE L1 -5739 1124 160 3726 191 19 0 chr11 5531068 5531823 -145251730 + L1MA7 LINE L1 5523 6291 0 1194 187 0 35 chr11 5531988 5532218 -145251335 - AluJb SINE Alu -12 300 79 267 404 40 27 chr11 5532256 5532540 -145251013 - L2 LINE L2 -285 2987 2702 507 232 63 7 chr11 5532827 5532969 -145250584 - L1MA10 LINE L1 -10 6324 6175 31 44 0 0 chr11 5532972 5533017 -145250536 + AT_rich Low_complexity Low_complexity 1 45 0 478 265 15 22 chr11 5533023 5533159 -145250394 + MLT1F1 LTR MaLR 1 135 -407 1312 285 9 6 chr11 5533159 5533482 -145250071 + L1M3c LINE L1 7 330 -5811 493 248 9 0 chr11 5533480 5533589 -145249964 - L1M3c LINE L1 -5695 446 337 * 1627 148 45 7 chr11 5533590 5533753 -145249800 + L1MA9 LINE L1 5987 6142 -170 180 77 0 0 chr11 5533753 5533779 -145249774 + (CA)n Simple_repeat Simple_repeat 2 27 0 1627 148 45 7 chr11 5533779 5533925 -145249628 + L1MA9 LINE L1 6142 6308 -4 786 287 31 11 chr11 5534097 5534358 -145249195 + MLT1F1 LTR MaLR 302 567 0 3488 38 2 29 chr11 5534520 5534973 -145248580 - L1PA6 LINE L1 -6 6148 5708 1403 69 0 0 chr11 5534973 5535148 -145248405 + L1PA6 LINE L1 5544 5718 -436 * 6348 199 9 4 chr11 5535132 5536412 -145247141 - L1PA15-16 LINE L1 -1586 5263 3977 3789 246 16 19 chr11 5536409 5537671 -145245882 - L1PA15-16 LINE L1 -3684 3165 1895 * 480 18 0 0 chr11 5537674 5537731 -145245822 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2220 153 42 83 chr11 5537821 5537917 -145245636 + L1MA4 LINE L1 5762 5860 -440 1895 122 46 20 chr11 5537917 5538221 -145245332 + AluSx SINE Alu 1 312 0 2220 153 42 83 chr11 5538221 5538678 -145244875 + L1MA4 LINE L1 5860 6292 -8 216 97 0 0 chr11 5539038 5539069 -145244484 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr11 5539784 5539805 -145243748 + AT_rich Low_complexity Low_complexity 1 21 0 3171 90 0 0 chr11 5541439 5541871 -145241682 - L1PA7 LINE L1 0 6154 5723 325 55 68 0 chr11 5543114 5543187 -145240366 + (TA)n Simple_repeat Simple_repeat 2 79 0 23 0 0 0 chr11 5543193 5543216 -145240337 + AT_rich Low_complexity Low_complexity 1 23 0 324 133 36 0 chr11 5544592 5544675 -145238878 + CT-rich Low_complexity Low_complexity 2 87 0 801 357 65 15 chr11 5544873 5545349 -145238204 + L2 LINE L2 2814 3313 0 310 315 79 43 chr11 5545642 5545947 -145237606 + L1M4 LINE L1 2963 3278 -2868 2118 20 0 0 chr11 5545958 5546204 -145237349 - L1PA4 LINE L1 -5 6150 5905 242 237 151 0 chr11 5546512 5546605 -145236948 - MLT1E LTR MaLR -167 400 294 198 0 0 0 chr11 5546619 5546641 -145236912 + (T)n Simple_repeat Simple_repeat 1 22 0 231 94 0 0 chr11 5546724 5546756 -145236797 - L1P LINE L1 -746 5426 5395 2915 62 20 20 chr11 5546756 5547160 -145236393 + L1PA8 LINE L1 5769 6172 0 506 285 13 7 chr11 5547197 5547348 -145236205 - MLT1E LTR MaLR -439 154 3 471 274 85 33 chr11 5547349 5547619 -145235934 + L1ME3A LINE L1 5721 6004 -166 1017 241 133 22 chr11 5547651 5547975 -145235578 - MLT2B1 LTR ERVL -158 362 3 301 322 41 16 chr11 5547979 5548100 -145235453 + L1ME3A LINE L1 6043 6166 -4 218 175 48 0 chr11 5548395 5548458 -145235095 + (AATAG)n Simple_repeat Simple_repeat 4 69 0 5049 179 18 12 chr11 5549289 5551106 -145232447 - L1PB4 LINE L1 -8 6148 4315 21 36 0 0 chr11 5551111 5551139 -145232414 + AT_rich Low_complexity Low_complexity 1 28 0 2716 159 11 0 chr11 5551174 5551632 -145231921 - L1PA16 LINE L1 -105 6061 5599 * 3978 193 30 68 chr11 5551628 5553114 -145230439 + L1PA16 LINE L1 4186 5600 -566 2269 218 19 0 chr11 5553111 5553625 -145229928 - L1PB4 LINE L1 -1818 4328 3805 * 202 395 35 0 chr11 5555341 5555455 -145228098 + MIR SINE MIR 67 184 -78 189 0 0 0 chr11 5558175 5558196 -145225357 + (GA)n Simple_repeat Simple_repeat 2 22 0 2712 140 39 16 chr11 5559337 5559824 -145223729 + L1PA16 LINE L1 5660 6157 -9 278 54 0 0 chr11 5559826 5559863 -145223690 + L1MA6 LINE L1 6112 6148 -152 12353 33 0 0 chr11 5559873 5562111 -145221442 - L1PA4 LINE L1 -3 6152 3914 683 170 14 0 chr11 5562111 5562250 -145221303 + L1MA6 LINE L1 6154 6296 -4 3704 195 38 55 chr11 5562259 5562321 -145221232 + L1MB5 LINE L1 4900 4962 -1212 2129 122 3 3 chr11 5562321 5562615 -145220938 + AluSc SINE Alu 6 299 -10 3704 195 38 55 chr11 5562615 5563308 -145220245 + L1MB5 LINE L1 4962 5627 -547 2176 96 6 16 chr11 5563308 5563622 -145219931 + AluY SINE Alu 1 311 0 3704 195 38 55 chr11 5563622 5564145 -145219408 + L1MB5 LINE L1 5627 6157 -17 1322 237 95 94 chr11 5564669 5565214 -145218339 + MER77 LTR ERV1 54 599 -6 273 313 102 0 chr11 5565464 5565630 -145217923 - L1M4 LINE L1 -1307 4839 4657 421 321 57 24 chr11 5565734 5565943 -145217610 + MIR SINE MIR 47 262 0 182 219 16 0 chr11 5567352 5567416 -145216137 + (TA)n Simple_repeat Simple_repeat 2 66 0 243 139 25 13 chr11 5567939 5568018 -145215535 + C-rich Low_complexity Low_complexity 4 83 0 646 126 0 0 chr11 5568119 5568222 -145215331 - L1 LINE L1 -1565 4581 4479 520 265 36 14 chr11 5568256 5568479 -145215074 - L1M4 LINE L1 -1349 4797 4570 12106 148 45 10 chr11 5568479 5569193 -145214360 + Tigger1 DNA MER2_type 252 939 -1479 333 0 0 0 chr11 5569193 5569230 -145214323 + (TC)n Simple_repeat Simple_repeat 2 38 0 297 109 0 0 chr11 5569229 5569284 -145214269 + (TA)n Simple_repeat Simple_repeat 1 55 0 * 12106 148 45 10 chr11 5569230 5569284 -145214269 + Tigger1 DNA MER2_type 939 990 -1428 2014 129 3 3 chr11 5569284 5569570 -145213983 - AluSq SINE Alu -27 286 1 12106 148 45 10 chr11 5569570 5570947 -145212606 + Tigger1 DNA MER2_type 990 2418 0 218 326 123 36 chr11 5572455 5572593 -145210960 + L3 LINE CR1 1304 1453 -124 1068 108 30 0 chr11 5572610 5572776 -145210777 + L1PA13 LINE L1 5993 6163 0 398 397 39 0 chr11 5573246 5573503 -145210050 - L2 LINE L2 -339 2975 2709 351 0 0 0 chr11 5573832 5573871 -145209682 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr11 5573870 5573893 -145209660 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 210 143 0 0 chr11 5574037 5574072 -145209481 + (GAAA)n Simple_repeat Simple_repeat 4 38 0 444 182 26 0 chr11 5576774 5576851 -145206702 - MER2 DNA MER2_type 0 345 267 1125 173 20 10 chr11 5576877 5577079 -145206474 - MER2 DNA MER2_type -135 210 7 207 358 32 0 chr11 5577648 5577743 -145205810 - MIR SINE MIR -51 211 114 354 186 44 9 chr11 5578120 5578233 -145205320 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 1306 228 140 33 chr11 5578907 5579409 -145204144 - LTR10B LTR ERV1 -3 544 1 5640 263 9 7 chr11 5579413 5580782 -145202771 - HERVI LTR ERV1 -2 7783 6412 1604 219 19 17 chr11 5581130 5581491 -145202062 - HERVI LTR ERV1 -3737 3159 2798 622 198 9 0 chr11 5581462 5581578 -145201975 - HERVI LTR ERV1 -2164 4485 4369 * 299 211 33 78 chr11 5581598 5581688 -145201865 - HERVI LTR ERV1 -2369 5416 5331 * 337 237 31 41 chr11 5581657 5581754 -145201799 - HERVI LTR ERV1 -2858 4927 4832 951 177 74 5 chr11 5581784 5582050 -145201503 - HERVI LTR ERV1 -3146 4639 4325 464 276 55 7 chr11 5582112 5582257 -145201296 - HERVI LTR ERV1 -3485 3164 3013 2594 197 50 68 chr11 5582840 5583916 -145199637 - HERVI LTR ERV1 -6786 999 3 947 194 172 95 chr11 5583938 5584443 -145199110 - LTR10B LTR ERV1 -3 544 1 817 102 8 0 chr11 5584567 5584685 -145198868 - L1P LINE L1 -3161 2985 2867 42 20 0 0 chr11 5585843 5585892 -145197661 + AT_rich Low_complexity Low_complexity 1 49 0 5880 221 94 44 chr11 5585936 5586765 -145196788 + L1MDa LINE L1 2937 3724 -3841 1780 88 0 24 chr11 5586765 5587014 -145196539 + L1PA8A LINE L1 5882 6124 -7 2495 62 0 3 chr11 5587015 5587319 -145196234 + AluY SINE Alu 1 303 -8 5880 221 94 44 chr11 5587319 5589225 -145194328 + L1MDa LINE L1 3723 5839 -1726 23 54 0 0 chr11 5590148 5590185 -145193368 + AT_rich Low_complexity Low_complexity 1 37 0 229 250 25 0 chr11 5591608 5591688 -145191865 + L1MC4 LINE L1 6620 6701 -1341 14080 182 46 11 chr11 5591702 5596117 -145187436 - L1PB1 LINE L1 0 6867 2611 204 67 0 0 chr11 5596117 5596147 -145187406 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 1823 145 30 0 chr11 5596147 5596416 -145187137 - AluSx SINE Alu -35 277 1 14080 182 46 11 chr11 5596416 5598024 -145185529 - L1PB1 LINE L1 -4255 2612 620 825 169 14 0 chr11 5598004 5598152 -145185401 - L1PB1 LINE L1 -6663 200 51 * 477 225 50 6 chr11 5598259 5598441 -145185112 - L1M4 LINE L1 -2929 3217 3028 764 207 0 0 chr11 5598464 5598609 -145184944 - MSTD-int LTR MaLR -1589 146 2 1975 155 58 56 chr11 5598609 5599002 -145184551 - MSTD LTR MaLR -2 394 1 1154 44 0 0 chr11 5599547 5599684 -145183869 + L1PA3 LINE L1 6016 6152 -3 397 322 52 17 chr11 5600454 5600687 -145182866 - MIR SINE MIR -10 252 12 355 266 18 9 chr11 5600795 5600908 -145182645 - LTR67 LTR ERVL -4 553 440 31100 54 37 3 chr11 5601596 5605552 -145178001 + L1P LINE L1 13 4103 -2043 401 230 11 0 chr11 5605558 5605645 -145177908 + LTR26 LTR ERV1 516 603 0 684 314 14 35 chr11 5605667 5605954 -145177599 + L1ME LINE L1 188 468 -5602 606 94 24 0 chr11 5605957 5606042 -145177511 + L1P LINE L1 12 98 -6048 * 6745 66 2 19 chr11 5606036 5606924 -145176629 + L1P LINE L1 617 1489 -4657 10917 24 0 1 chr11 5606924 5608961 -145174592 + L1PA4 LINE L1 4114 6153 -2 1071 304 24 28 chr11 5608967 5609507 -145174046 + L1ME LINE L1 456 993 -5077 * 13786 162 75 26 chr11 5609496 5612058 -145171495 + L1M1 LINE L1 27 2713 -4852 5091 123 7 8 chr11 5612521 5613735 -145169818 + L1PA11 LINE L1 4745 5954 -220 1411 231 119 22 chr11 5614700 5615246 -145168307 - Zaphod DNA AcHobo -241 3790 3192 298 268 55 88 chr11 5616508 5616780 -145166773 + HERVFH21 LTR ERV1 1366 1628 -6629 937 283 57 56 chr11 5616966 5617993 -145165560 + HERVFH21 LTR ERV1 885 1923 -4731 2308 293 60 62 chr11 5618030 5620500 -145163053 + HERVFH21 LTR ERV1 1765 4940 -2348 335 126 27 35 chr11 5620949 5621022 -145162531 + HERVFH21 LTR ERV1 4614 4783 -1746 206 179 51 64 chr11 5621032 5621110 -145162443 + L2 LINE L2 2997 3073 -199 1042 80 7 7 chr11 5621142 5621279 -145162274 + AluSp SINE Alu 1 137 -176 9524 51 121 14 chr11 5621282 5622528 -145161025 + SVA Other Other 7 1386 0 702 285 63 59 chr11 5622529 5623054 -145160499 + HERVFH21 LTR ERV1 4686 5322 -1207 451 234 49 40 chr11 5624722 5624909 -145158644 + HERVFH21 LTR ERV1 4202 7147 -245 291 208 39 0 chr11 5625133 5625210 -145158343 + HERVFH21 LTR ERV1 6446 6525 -4 488 270 56 113 chr11 5627297 5627811 -145155742 - MLT1G LTR MaLR -42 548 64 1687 285 31 34 chr11 5627922 5628505 -145155048 + L1MEc LINE L1 39 619 -5777 577 227 78 17 chr11 5630883 5631062 -145152491 + L1P LINE L1 4254 4441 -1705 2266 99 0 29 chr11 5632571 5632884 -145150669 + AluSc SINE Alu 1 304 -5 293 97 16 97 chr11 5633174 5633236 -145150317 - U2 snRNA snRNA -131 57 1 203 167 0 21 chr11 5636095 5636143 -145147410 + CT-rich Low_complexity Low_complexity 2 48 0 202 200 0 0 chr11 5636687 5636727 -145146826 + (CA)n Simple_repeat Simple_repeat 1 40 0 1331 201 23 10 chr11 5637846 5638156 -145145397 - MER33 DNA MER1_type -22 302 1 183 100 0 0 chr11 5638852 5638882 -145144671 + (TTTTTA)n Simple_repeat Simple_repeat 3 32 0 206 206 44 0 chr11 5638891 5638959 -145144594 + (TTAA)n Simple_repeat Simple_repeat 1 71 0 * 215 187 53 41 chr11 5638923 5639094 -145144459 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 505 94 9 113 chr11 5642627 5642733 -145140820 + LTR7 LTR ERV1 354 448 -2 14947 80 8 115 chr11 5642735 5645306 -145138247 + HERVH LTR ERV1 1 2297 -5416 1454 214 30 12 chr11 5645410 5645836 -145137717 - L1M4 LINE L1 -2976 3170 2737 195 370 30 15 chr11 5646857 5646992 -145136561 - L2 LINE L2 -13 3300 3164 26 0 0 0 chr11 5647729 5647755 -145135798 + AT_rich Low_complexity Low_complexity 1 26 0 305 26 0 0 chr11 5648797 5648836 -145134717 - L1PA16 LINE L1 -5 6161 6123 4621 154 11 4 chr11 5648960 5649772 -145133781 - L1PA16 LINE L1 -41 6125 5308 22 56 0 0 chr11 5650057 5650093 -145133460 + AT_rich Low_complexity Low_complexity 1 36 0 234 347 54 27 chr11 5650173 5650320 -145133233 - L2 LINE L2 0 3272 3122 693 341 42 59 chr11 5651052 5651641 -145131912 + L1MEc LINE L1 210 788 -5608 1877 156 3 6 chr11 5651649 5651977 -145131576 - MER50 LTR ERV1 -24 710 384 320 73 91 0 chr11 5652090 5652145 -145131408 + L1PA15 LINE L1 6106 6165 0 21 0 0 0 chr11 5652993 5653014 -145130539 + AT_rich Low_complexity Low_complexity 1 21 0 707 124 16 47 chr11 5653150 5653279 -145130274 + LTR8 LTR ERV1 567 691 0 7817 102 15 51 chr11 5653279 5654576 -145128977 + HUERS-P1 LTR ERV1 1 1250 -5013 189 94 0 0 chr11 5654589 5654621 -145128932 + (TC)n Simple_repeat Simple_repeat 1 32 0 8124 123 25 56 chr11 5654621 5656167 -145127386 + HUERS-P1 LTR ERV1 1217 2713 -3550 287 242 0 22 chr11 5656171 5656262 -145127291 - L1M4 LINE L1 -2467 3679 3591 21 71 0 0 chr11 5656351 5656393 -145127160 + AT_rich Low_complexity Low_complexity 1 42 0 1278 262 42 39 chr11 5656604 5657036 -145126517 - L1MEc LINE L1 -5928 468 36 2196 124 0 0 chr11 5657166 5657465 -145126088 + AluSp SINE Alu 1 299 -14 2004 128 59 0 chr11 5658557 5658846 -145124707 - AluSg SINE Alu -4 306 1 246 340 71 29 chr11 5659786 5660024 -145123529 - L2 LINE L2 -1035 2279 2032 2154 135 0 3 chr11 5660561 5660857 -145122696 - AluSx SINE Alu -17 295 1 1336 131 0 15 chr11 5661758 5661957 -145121596 - AluSq SINE Alu -117 196 1 281 333 16 24 chr11 5662067 5662190 -145121363 - L2 LINE L2 -2 3311 3190 240 416 34 0 chr11 5662280 5662369 -145121184 + L2 LINE L2 3149 3240 -32 303 350 42 8 chr11 5662492 5662612 -145120941 - L2 LINE L2 -2068 1246 1123 715 284 141 30 chr11 5662615 5663084 -145120469 + LTR33 LTR ERVL 1 521 0 808 228 25 30 chr11 5663301 5663503 -145120050 + MIR SINE MIR 41 241 -21 228 241 0 0 chr11 5663987 5664045 -145119508 + GA-rich Low_complexity Low_complexity 3 60 0 228 271 14 14 chr11 5664049 5664119 -145119434 + L1MEd LINE L1 460 529 -5590 211 273 131 10 chr11 5666614 5666713 -145116840 + L3b LINE CR1 1268 1378 -205 443 357 151 24 chr11 5666878 5667621 -145115932 + L2 LINE L2 1938 2774 -540 23 54 0 0 chr11 5668181 5668218 -145115335 + AT_rich Low_complexity Low_complexity 1 37 0 352 96 0 0 chr11 5668333 5668385 -145115168 - MADE1 DNA Mariner 0 80 29 5475 132 19 9 chr11 5669144 5670709 -145112844 - L1MA1 LINE L1 -127 6175 4589 2205 163 25 83 chr11 5671246 5671496 -145112057 - MER66B LTR ERV1 0 486 280 2144 128 0 7 chr11 5671496 5671800 -145111753 - AluSx SINE Alu -10 302 1 2205 163 25 83 chr11 5671800 5672065 -145111488 - MER66B LTR ERV1 -206 280 1 282 152 0 0 chr11 5672899 5672945 -145110608 + HERVK11 LTR ERVK 6722 6767 -1186 * 413 167 10 31 chr11 5672936 5673032 -145110521 + HERVK11 LTR ERVK 6963 7056 -897 * 2589 63 0 0 chr11 5672989 5673321 -145110232 - HERVK11 LTR ERVK -4731 3222 2891 * 2932 87 52 0 chr11 5673307 5673733 -145109820 - HERVK11 LTR ERVK -6341 1612 1165 2161 118 24 9 chr11 5673708 5674303 -145109250 - HERVK11 LTR ERVK -7081 872 206 * 2218 110 3 0 chr11 5674300 5674618 -145108935 - HERVK11 LTR ERVK -7634 319 1 5128 151 40 53 chr11 5674618 5675704 -145107849 - MER11C LTR ERVK 0 1071 1 1898 56 4 8 chr11 5675874 5676140 -145107413 + LTR7 LTR ERV1 1 265 -185 1870 111 15 19 chr11 5676538 5676800 -145106753 + AluSg SINE Alu 37 297 -13 22 56 0 0 chr11 5676998 5677034 -145106519 + AT_rich Low_complexity Low_complexity 1 36 0 230 328 86 9 chr11 5677504 5677620 -145105933 + MIR SINE MIR 57 181 -81 1612 219 19 32 chr11 5677995 5678365 -145105188 - MLT1A1 LTR MaLR 0 365 1 1632 199 43 10 chr11 5679614 5680012 -145103541 + L1MA9 LINE L1 5872 6282 -30 193 151 38 19 chr11 5680019 5680072 -145103481 + GA-rich Low_complexity Low_complexity 3 56 0 418 269 43 14 chr11 5680971 5681112 -145102441 + MIR SINE MIR 45 189 -73 194 352 67 9 chr11 5681119 5681224 -145102329 - L2 LINE L2 0 3272 3162 261 311 59 0 chr11 5681305 5681440 -145102113 - MIR SINE MIR -1 261 119 523 158 38 22 chr11 5681447 5681564 -145101989 + MLT1C LTR MaLR 1 106 -361 333 301 131 11 chr11 5682028 5682211 -145101342 - L1MDa LINE L1 -4711 1418 1214 289 263 123 78 chr11 5682220 5682722 -145100831 - L1MDa LINE L1 -4931 1188 664 1244 230 24 68 chr11 5682751 5683133 -145100420 + MLT1A1 LTR MaLR 1 365 0 246 136 0 0 chr11 5683249 5683293 -145100260 + (TG)n Simple_repeat Simple_repeat 1 44 0 344 106 30 15 chr11 5683407 5683473 -145100080 + Tigger3(Golem) DNA MER2_type 2432 2498 -531 198 103 0 0 chr11 5683628 5683657 -145099896 + (TA)n Simple_repeat Simple_repeat 2 30 0 4846 188 152 107 chr11 5684019 5685681 -145097872 - MER52A LTR ERV1 0 1755 19 1676 304 50 17 chr11 5686017 5686661 -145096892 + L1M2b LINE L1 1163 1827 -5382 1682 205 44 0 chr11 5686662 5687004 -145096549 + MSTA LTR MaLR 1 357 -71 544 355 12 0 chr11 5687004 5687249 -145096304 + MSTA-int LTR MaLR 8 255 -1396 3484 193 44 31 chr11 5687349 5688146 -145095407 + MLT1A1-int LTR MaLR 49 855 -796 3026 174 61 2 chr11 5688144 5688718 -145094835 + MLT1A1-int LTR MaLR 1044 1651 0 * 2389 157 36 2 chr11 5688718 5689131 -145094422 + MSTA LTR MaLR 1 427 -1 4534 165 10 40 chr11 5689134 5689734 -145093819 + L1M2 LINE L1 1478 2036 -4813 862 128 0 0 chr11 5689734 5689851 -145093702 + 5S rRNA rRNA 1 117 -4 4534 165 10 40 chr11 5689851 5690284 -145093269 + L1M2 LINE L1 2036 2480 -4369 701 100 10 0 chr11 5690284 5690384 -145093169 - MSTA LTR MaLR -319 109 9 6168 201 47 17 chr11 5690384 5692128 -145091425 + L1M2 LINE L1 2767 4565 -2283 1415 157 7 54 chr11 5692128 5692422 -145091131 - THE1B LTR MaLR 0 364 85 220 324 74 19 chr11 5692551 5692659 -145090894 + MIR SINE MIR 40 153 -109 426 255 242 32 chr11 5695176 5695556 -145087997 + LTR50 LTR ERVL 1 460 -335 241 296 61 41 chr11 5698511 5698609 -145084944 + L2 LINE L2 3169 3268 -4 21 0 0 0 chr11 5698623 5698644 -145084909 + AT_rich Low_complexity Low_complexity 1 21 0 753 333 40 50 chr11 5700553 5700956 -145082597 + LTR16A LTR ERVL 52 450 0 22 56 0 0 chr11 5701289 5701325 -145082228 + AT_rich Low_complexity Low_complexity 1 36 0 180 253 287 0 chr11 5701696 5701783 -145081770 - L2 LINE L2 -493 2821 2710 358 336 141 35 chr11 5701885 5702153 -145081400 - L2 LINE L2 -2503 811 490 180 111 0 0 chr11 5702153 5702180 -145081373 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 358 336 141 35 chr11 5702180 5702286 -145081267 - L2 LINE L2 -2824 490 397 198 252 34 101 chr11 5702308 5702427 -145081126 + MIR SINE MIR 136 246 -16 198 279 118 0 chr11 5702838 5702906 -145080647 - L2 LINE L2 0 3313 3238 32 26 0 0 chr11 5702951 5702990 -145080563 + AT_rich Low_complexity Low_complexity 1 39 0 193 282 59 24 chr11 5705276 5705361 -145078192 + MIR SINE MIR 17 104 -104 241 376 43 0 chr11 5705964 5706081 -145077472 - MIR3 SINE MIR -53 155 34 409 303 32 27 chr11 5706634 5706806 -145076747 + MIR SINE MIR 34 206 -56 3716 58 0 9 chr11 5707052 5707504 -145076049 - LTR7 LTR ERV1 -2 448 1 2449 92 48 13 chr11 5707504 5707883 -145075670 - HERVH LTR ERV1 0 7713 7322 1449 120 18 5 chr11 5707881 5708098 -145075455 - HERVH LTR ERV1 -1894 5819 5600 * 4312 153 1 1 chr11 5708099 5708761 -145074792 - HERVH LTR ERV1 -2564 5149 4488 2991 126 7 2 chr11 5708763 5709224 -145074329 - HERVH LTR ERV1 -3720 3993 3531 248 352 62 14 chr11 5709329 5709474 -145074079 + MIR SINE MIR 100 251 -11 5920 37 0 4 chr11 5712004 5712679 -145070874 - L1PA4 LINE L1 0 6155 5484 210 143 0 0 chr11 5716384 5716419 -145067134 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 765 110 22 52 chr11 5716419 5716555 -145066998 - L1MA8 LINE L1 -507 5793 5662 2194 174 28 24 chr11 5716567 5717027 -145066526 + L1MA8 LINE L1 5825 6286 -5 640 252 53 27 chr11 5717238 5717424 -145066129 + MER33 DNA MER1_type 1 183 -93 576 179 62 0 chr11 5718823 5718968 -145064585 + MER33 DNA MER1_type 160 313 -11 266 329 174 18 chr11 5719228 5719447 -145064106 + L2 LINE L2 2595 2847 -467 715 369 47 8 chr11 5720081 5720444 -145063109 - LTR16A LTR ERVL -22 428 52 203 327 59 40 chr11 5722410 5722511 -145061042 - L2 LINE L2 -1 3271 3169 1003 142 7 13 chr11 5722861 5723016 -145060537 - L1PB3 LINE L1 -17 6137 5984 22 35 0 0 chr11 5723463 5723492 -145060061 + AT_rich Low_complexity Low_complexity 1 29 0 299 353 107 0 chr11 5723515 5723702 -145059851 - MIR SINE MIR -55 207 1 330 335 110 40 chr11 5724108 5724661 -145058892 - L2 LINE L2 -540 2774 2183 215 294 71 53 chr11 5725047 5725217 -145058336 + L2 LINE L2 1868 2040 -1274 301 370 95 23 chr11 5725838 5726354 -145057199 - L2 LINE L2 -1618 1696 1144 467 240 148 20 chr11 5729484 5729680 -145053873 + MLT1J LTR MaLR 283 503 -8 815 183 57 22 chr11 5730547 5730777 -145052776 + L1M4 LINE L1 2789 3026 -3120 2722 283 44 37 chr11 5730889 5731801 -145051752 + L1PA15 LINE L1 1 918 -5869 8100 247 34 13 chr11 5731809 5734844 -145048709 + L1PA15 LINE L1 1277 4396 -2401 7194 212 11 3 chr11 5735264 5737638 -145045915 + L1PA15 LINE L1 4431 6812 -4 567 233 39 22 chr11 5737641 5737873 -145045680 + L1M4 LINE L1 3140 3375 -2771 310 269 0 58 chr11 5737977 5738081 -145045472 + CT-rich Low_complexity Low_complexity 3 100 0 24 32 0 0 chr11 5738267 5738298 -145045255 + AT_rich Low_complexity Low_complexity 1 31 0 5996 30 1 1 chr11 5738312 5738975 -145044578 + L1PA4 LINE L1 5474 6136 -19 882 271 18 5 chr11 5739287 5739505 -145044048 - MIR SINE MIR -1 261 41 2252 108 0 0 chr11 5739797 5740092 -145043461 + AluSg SINE Alu 2 296 -14 830 268 91 40 chr11 5740092 5740488 -145043065 - LTR33 LTR ERVL -59 462 47 374 238 133 9 chr11 5740527 5740632 -145042921 + L2 LINE L2 1121 1238 -2076 261 348 52 9 chr11 5740739 5740854 -145042699 - L2 LINE L2 -4 3309 3190 26 0 0 0 chr11 5741022 5741048 -145042505 + AT_rich Low_complexity Low_complexity 1 26 0 493 108 15 0 chr11 5741308 5741373 -145042180 + AluJ/FLAM SINE Alu 2 67 -245 836 112 0 0 chr11 5741375 5741491 -145042062 + AluSq SINE Alu 102 217 -96 3022 143 9 2 chr11 5741591 5742053 -145041500 + MER75 DNA T2_type 14 478 -36 2017 126 23 0 chr11 5742565 5742866 -145040687 + AluSq SINE Alu 1 308 -5 242 344 80 16 chr11 5743488 5743613 -145039940 + L3 LINE CR1 1434 1566 -11 223 362 43 29 chr11 5743899 5744037 -145039516 - L2 LINE L2 -2667 647 508 4906 172 25 40 chr11 5744193 5745913 -145037640 - L1MA8 LINE L1 -17 7693 6006 9550 74 13 75 chr11 5745913 5747456 -145036097 + SVA Other Other 4 1386 -518 319 164 0 0 chr11 5747456 5747517 -145036036 - L1MA8 LINE L1 -1547 6018 5958 * 4828 200 36 15 chr11 5747513 5748211 -145035342 - L1MA8 LINE L1 -1923 5642 4905 2621 22 0 38 chr11 5748211 5748525 -145035028 - AluYb8 SINE Alu -7 311 10 4828 200 36 15 chr11 5748525 5749056 -145034497 - L1MA8 LINE L1 -2660 4905 4387 2564 234 16 61 chr11 5749052 5750130 -145033423 - L1MA8 LINE L1 -4594 2971 2008 * 1312 229 32 12 chr11 5750331 5750745 -145032808 - L1MA8 LINE L1 -6685 804 84 184 388 17 17 chr11 5751438 5751554 -145031999 - L2 LINE L2 -184 3088 2973 1845 158 0 34 chr11 5751785 5752108 -145031445 + AluJb SINE Alu 1 312 0 351 0 0 0 chr11 5752590 5752629 -145030924 + (CA)n Simple_repeat Simple_repeat 2 40 0 322 342 146 45 chr11 5755067 5755733 -145027820 + L2 LINE L2 2026 2758 -556 195 287 20 99 chr11 5755768 5755869 -145027684 + L2 LINE L2 3145 3237 -35 287 115 39 0 chr11 5755888 5755940 -145027613 + GA-rich Low_complexity Low_complexity 3 56 0 180 318 47 9 chr11 5755946 5756053 -145027500 + L2 LINE L2 2798 2908 -406 184 337 54 43 chr11 5756399 5756491 -145027062 - L2 LINE L2 -166 3106 3014 494 337 168 28 chr11 5756754 5757599 -145025954 - L2 LINE L2 -553 2761 1799 287 374 133 29 chr11 5758818 5759232 -145024321 + L3 LINE CR1 935 1391 -186 21 0 0 0 chr11 5759930 5759951 -145023602 + AT_rich Low_complexity Low_complexity 1 21 0 554 250 47 26 chr11 5760252 5760444 -145023109 + MLT1J LTR MaLR 316 511 0 293 369 108 0 chr11 5760680 5760894 -145022659 - L2 LINE L2 -654 2660 2424 339 340 46 92 chr11 5760924 5761230 -145022323 - L2 LINE L2 -2042 1272 981 5288 128 16 16 chr11 5761506 5762553 -145021000 + L1PA15 LINE L1 5119 6165 0 480 280 25 30 chr11 5762770 5762970 -145020583 - L1PA12 LINE L1 -5198 2383 2185 1318 313 19 30 chr11 5763427 5764021 -145019532 - L1PA12 LINE L1 -6200 1374 788 192 152 0 0 chr11 5764220 5764253 -145019300 + T-rich Low_complexity Low_complexity 1 33 0 1409 227 35 28 chr11 5764257 5765044 -145018509 + L1ME LINE L1 4866 5662 -504 6180 30 0 0 chr11 5765099 5765860 -145017693 - L1PA4 LINE L1 0 6155 5395 3442 25 0 9 chr11 5765859 5766308 -145017245 + L1PA4 LINE L1 4953 5397 -749 * 355 270 40 69 chr11 5766313 5766639 -145016914 - L1M4 LINE L1 -1037 5109 4797 8750 121 8 7 chr11 5766642 5767928 -145015625 + HSMAR1 DNA Mariner 1 1287 0 15841 179 19 9 chr11 5767929 5772181 -145011372 - L1PA14 LINE L1 -1 6160 1890 7508 137 4 2 chr11 5772368 5773667 -145009886 + L1P LINE L1 2786 4086 -2060 664 80 44 0 chr11 5773663 5773725 -145009828 + L1PA2 LINE L1 5319 5377 -797 * 17200 30 1 0 chr11 5773725 5775139 -145008414 + L1PA2 LINE L1 3305 4716 -1439 2825 7 0 0 chr11 5775139 5775446 -145008107 + AluYb8 SINE Alu 1 307 -11 17200 30 1 0 chr11 5775446 5776893 -145006660 + L1PA2 LINE L1 4716 6155 0 664 80 44 0 chr11 5776893 5776943 -145006610 + L1PA2 LINE L1 5377 5436 -738 290 342 0 9 chr11 5777251 5777362 -145006191 - ERVL LTR ERVL -664 5100 4991 366 324 106 32 chr11 5778190 5778625 -145004928 - L2 LINE L2 -1277 2037 1571 407 311 52 46 chr11 5779312 5779640 -145003913 + L1M4 LINE L1 4028 4357 -1789 329 326 0 0 chr11 5780051 5780140 -145003413 - L2 LINE L2 -16 3297 3209 5879 223 37 23 chr11 5780196 5784281 -144999272 + L1PBa LINE L1 3 3194 -3668 270 208 75 50 chr11 5784323 5784443 -144999110 + L1MA9 LINE L1 6150 6272 -40 432 55 0 0 chr11 5784460 5784515 -144999038 + (CA)n Simple_repeat Simple_repeat 2 56 0 742 314 147 0 chr11 5784529 5784848 -144998705 - LTR33 LTR ERVL -153 368 3 21 0 0 0 chr11 5786396 5786417 -144997136 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 5786528 5786552 -144997001 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr11 5786673 5786706 -144996847 + AT_rich Low_complexity Low_complexity 1 33 0 2030 103 9 59 chr11 5786743 5787064 -144996489 + AluSc SINE Alu 1 305 -4 2048 138 13 3 chr11 5787151 5787449 -144996104 + AluJb SINE Alu 1 301 -11 742 89 45 0 chr11 5788823 5788935 -144994618 - L1PB1 LINE L1 -6 6145 6029 37 23 0 0 chr11 5789121 5789165 -144994388 + AT_rich Low_complexity Low_complexity 1 44 0 313 289 63 11 chr11 5789313 5789503 -144994050 + L1ME LINE L1 5556 5755 -366 4994 112 29 115 chr11 5789690 5789796 -144993757 + L1MA4 LINE L1 5211 5324 -976 2013 80 109 0 chr11 5789796 5790070 -144993483 + AluY SINE Alu 1 304 -7 4994 112 29 115 chr11 5790070 5790783 -144992770 + L1MA4 LINE L1 5324 5901 -399 1979 60 0 0 chr11 5790783 5791015 -144992538 + AluSx SINE Alu 1 232 -80 4994 112 29 115 chr11 5791015 5791384 -144992169 + L1MA4 LINE L1 5901 6300 0 207 0 0 0 chr11 5791542 5791565 -144991988 + (TA)n Simple_repeat Simple_repeat 1 23 0 31 44 0 0 chr11 5791724 5791769 -144991784 + AT_rich Low_complexity Low_complexity 1 45 0 184 205 0 0 chr11 5792144 5792183 -144991370 - L2 LINE L2 -981 2333 2295 1944 172 3 0 chr11 5792328 5792631 -144990922 - AluSx SINE Alu -8 304 1 360 292 77 0 chr11 5793912 5794107 -144989446 + L1ME LINE L1 5520 5729 -392 22 70 0 0 chr11 5794162 5794205 -144989348 + AT_rich Low_complexity Low_complexity 1 43 0 674 305 14 9 chr11 5794255 5794478 -144989075 - MIR SINE MIR -2 260 37 217 276 26 97 chr11 5794506 5794663 -144988890 + MIR SINE MIR 58 202 -60 180 294 119 55 chr11 5794802 5794911 -144988642 + L2 LINE L2 3175 3290 -23 228 285 106 80 chr11 5795428 5795579 -144987974 - MIR SINE MIR -71 191 37 243 88 0 0 chr11 5795645 5795679 -144987874 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1472 265 94 39 chr11 5796465 5797047 -144986506 + MLT1G LTR MaLR 17 590 0 1404 218 152 47 chr11 5797242 5797709 -144985844 - LTR41 LTR ERVL -1 772 257 868 301 118 36 chr11 5797765 5798266 -144985287 + L1M4 LINE L1 8 549 -5993 1041 185 50 37 chr11 5798273 5798571 -144984982 + L1M4 LINE L1 1029 1330 -5212 425 215 50 0 chr11 5798582 5798703 -144984850 + L1M4 LINE L1 1624 1750 -4896 1190 229 26 61 chr11 5798712 5799216 -144984337 + L1M4 LINE L1 1706 2375 -4271 353 232 61 0 chr11 5799217 5799299 -144984254 - MER2 DNA MER2_type 0 345 259 685 230 66 7 chr11 5799306 5799573 -144983980 + L1M4 LINE L1 2542 2823 -3821 1356 214 18 25 chr11 5799609 5799885 -144983668 + Tigger7 DNA MER2_type 1 274 -2213 406 224 0 47 chr11 5799885 5799970 -144983583 + Tigger7 DNA MER2_type 2395 2475 -12 753 171 30 6 chr11 5799976 5800312 -144983241 + L1M4 LINE L1 2828 3272 -3372 9190 216 18 31 chr11 5800315 5803286 -144980267 + L1P3 LINE L1 2 3083 -3378 4051 13 0 0 chr11 5803389 5803837 -144979716 + L1PA2 LINE L1 5698 6145 -10 711 295 85 9 chr11 5804922 5805146 -144978407 + MIR SINE MIR 9 249 -13 466 308 157 19 chr11 5805165 5805477 -144978076 + L1ME3 LINE L1 5008 5362 -784 742 288 76 24 chr11 5805562 5805932 -144977621 + L1ME3 LINE L1 5477 5865 -299 1696 191 5 43 chr11 5806423 5806794 -144976759 - MLT1A2 LTR MaLR -4 370 14 619 247 82 0 chr11 5808845 5809003 -144974550 + MIR SINE MIR 12 182 -80 305 259 62 0 chr11 5809196 5809277 -144974276 + L2 LINE L2 3147 3232 -40 1736 163 3 7 chr11 5809589 5809883 -144973670 - AluJo SINE Alu -19 293 1 261 324 0 0 chr11 5810155 5810229 -144973324 - L2 LINE L2 -11 3302 3229 250 164 177 27 chr11 5811140 5811253 -144972300 - MIR3 SINE MIR -21 187 59 454 94 47 0 chr11 5814246 5814310 -144969243 + AluJ/FRAM SINE Alu 221 287 -25 312 287 58 0 chr11 5814316 5814403 -144969150 + L1ME LINE L1 5628 5719 -402 1064 224 89 20 chr11 5814773 5815076 -144968477 + MER46C DNA MER2_type 2 325 -13 357 213 0 0 chr11 5815628 5815703 -144967850 - L1PB4 LINE L1 0 6156 6082 212 247 136 25 chr11 5817886 5817967 -144965586 + L2 LINE L2 2969 3058 -214 290 244 0 24 chr11 5818060 5818142 -144965411 + MIR SINE MIR 183 262 0 203 133 0 0 chr11 5818558 5818588 -144964965 + (TG)n Simple_repeat Simple_repeat 2 31 0 2064 126 35 20 chr11 5818728 5819070 -144964483 + MER7A DNA MER2_type 1 345 -1 869 180 22 28 chr11 5819101 5819279 -144964274 - MER5B DNA MER1_type 0 178 2 479 237 93 61 chr11 5819991 5820211 -144963342 - MIR SINE MIR 0 262 38 356 184 0 26 chr11 5820694 5820770 -144962783 + L1PB4 LINE L1 6083 6156 0 673 152 159 14 chr11 5821241 5821379 -144962174 - MER4D LTR ERV1 -389 514 357 21 0 0 0 chr11 5821381 5821402 -144962151 + AT_rich Low_complexity Low_complexity 1 21 0 2242 84 3 0 chr11 5821404 5821701 -144961852 - AluSg SINE Alu -12 298 1 903 199 26 5 chr11 5821701 5821892 -144961661 - MER4B LTR ERV1 -415 195 1 1057 349 64 25 chr11 5822103 5822891 -144960662 - ERVL LTR ERVL -418 5346 4484 2268 91 13 0 chr11 5823330 5823639 -144959914 + AluSp SINE Alu 1 313 0 487 271 97 13 chr11 5823882 5824037 -144959516 + MIR SINE MIR 32 199 -63 184 294 87 22 chr11 5824428 5824520 -144959033 - L2 LINE L2 -32 3240 3143 881 64 0 0 chr11 5825077 5825186 -144958367 - AluSp SINE Alu -204 109 1 2711 165 64 11 chr11 5825186 5825811 -144957742 - L1 LINE L1 -2691 3455 2798 442 298 88 18 chr11 5826009 5826180 -144957373 - MIR SINE MIR -27 235 53 358 378 82 0 chr11 5826195 5826391 -144957162 + MIR SINE MIR 2 213 -49 787 181 11 80 chr11 5827143 5827331 -144956222 + MER69A DNA AcHobo 2 176 -1 338 208 0 52 chr11 5827397 5827474 -144956079 + MIR SINE MIR 74 146 -62 323 325 138 8 chr11 5830863 5831109 -144952444 + L2 LINE L2 1727 2004 -1310 769 154 147 13 chr11 5831467 5831623 -144951930 - MER4D LTR ERV1 -370 533 357 21 0 0 0 chr11 5831625 5831646 -144951907 + AT_rich Low_complexity Low_complexity 1 21 0 2270 81 3 0 chr11 5831648 5831945 -144951608 - AluSg SINE Alu -12 298 1 951 189 26 5 chr11 5831945 5832136 -144951417 - MER4B LTR ERV1 -415 195 1 1057 349 64 25 chr11 5832347 5833135 -144950418 - ERVL LTR ERVL -418 5346 4484 2268 91 13 0 chr11 5833574 5833883 -144949670 + AluSp SINE Alu 1 313 0 487 271 97 13 chr11 5834126 5834281 -144949272 + MIR SINE MIR 32 199 -63 184 294 87 22 chr11 5834672 5834764 -144948789 - L2 LINE L2 -32 3240 3143 710 358 47 42 chr11 5835335 5835627 -144947926 + L2 LINE L2 909 1198 -2116 2472 61 0 0 chr11 5835627 5835938 -144947615 + AluY SINE Alu 1 311 0 710 358 47 42 chr11 5835938 5836240 -144947313 + L2 LINE L2 1198 1506 -1808 478 202 11 21 chr11 5836234 5836328 -144947225 - MIR SINE MIR -107 155 63 * 2243 102 3 0 chr11 5836434 5836738 -144946815 - AluSx SINE Alu -7 305 1 1418 267 114 9 chr11 5836745 5837202 -144946351 - MLT1J LTR MaLR -6 505 1 499 279 162 36 chr11 5837295 5837603 -144945950 + L2 LINE L2 1700 2046 -1268 3035 104 4 40 chr11 5837608 5837865 -144945688 + MER57B LTR ERV1 1 237 -197 2292 62 0 3 chr11 5837865 5838154 -144945399 - AluY SINE Alu -9 302 15 3035 104 4 40 chr11 5838154 5838346 -144945207 + MER57B LTR ERV1 237 434 0 414 293 81 11 chr11 5838375 5838549 -144945004 - L1M4 LINE L1 -921 5225 5040 1834 172 0 6 chr11 5838557 5838871 -144944682 - AluSx SINE Alu 0 312 1 2172 90 3 3 chr11 5839104 5839403 -144944150 - AluSp SINE Alu -14 299 1 1747 152 0 34 chr11 5839414 5839737 -144943816 - AluJb SINE Alu 0 312 1 652 285 36 105 chr11 5839937 5840103 -144943450 + L2 LINE L2 2325 2501 -813 833 168 0 0 chr11 5840103 5840234 -144943319 - FLAM_A SINE Alu -2 131 1 652 285 36 105 chr11 5840234 5840513 -144943040 + L2 LINE L2 2501 2739 -575 * 1097 217 134 97 chr11 5840512 5840774 -144942779 - L2 LINE L2 0 3313 3062 2057 110 0 3 chr11 5840774 5841065 -144942488 + AluSg1 SINE Alu 1 290 -19 1097 217 134 97 chr11 5841065 5841318 -144942235 - L2 LINE L2 -251 3062 2780 415 256 105 47 chr11 5841405 5841596 -144941957 + L2 LINE L2 2888 3089 -224 693 225 41 6 chr11 5841603 5841772 -144941781 - LTR33A LTR ERVL -10 513 339 2660 86 106 5 chr11 5841774 5842181 -144941372 - LTR7 LTR ERV1 -2 448 1 2440 81 65 14 chr11 5842181 5842552 -144941001 - HERVH LTR ERV1 0 7713 7324 1517 127 0 0 chr11 5842552 5842772 -144940781 - HERVH LTR ERV1 -1894 5819 5600 3014 132 5 2 chr11 5842773 5843384 -144940169 - HERVH LTR ERV1 -2564 5149 4489 * 5713 105 19 5 chr11 5843379 5844228 -144939325 - HERVH LTR ERV1 -3713 4000 3140 * 15035 110 10 22 chr11 5844207 5846989 -144936564 - HERVH LTR ERV1 -4718 2995 1 2777 72 99 5 chr11 5846999 5847402 -144936151 - LTR7 LTR ERV1 -9 441 1 276 256 171 82 chr11 5847425 5847694 -144935859 - LTR33A LTR ERVL -218 305 13 221 208 14 0 chr11 5847756 5847828 -144935725 + (CTATT)n Simple_repeat Simple_repeat 1 73 0 488 267 128 26 chr11 5847828 5848023 -144935530 + L2 LINE L2 3099 3313 0 277 310 28 0 chr11 5848042 5848113 -144935440 + L2 LINE L2 3199 3271 -42 1242 217 137 35 chr11 5848121 5848545 -144935008 - MLT1C LTR MaLR 0 467 1 277 273 75 127 chr11 5848580 5849017 -144934536 + L2 LINE L2 2628 3052 -220 568 167 80 60 chr11 5851136 5851258 -144932295 - MER5C DNA MER1_type 0 324 197 2267 103 0 0 chr11 5851258 5851569 -144931984 + AluSq SINE Alu 1 311 -2 568 167 80 60 chr11 5851569 5851596 -144931957 - MER5C DNA MER1_type -127 197 172 1591 153 11 0 chr11 5851604 5851866 -144931687 - L1MD3 LINE L1 -5 7990 7726 747 206 39 7 chr11 5851868 5852023 -144931530 - MER5C DNA MER1_type -164 160 1 267 31 0 0 chr11 5852340 5852372 -144931181 + (T)n Simple_repeat Simple_repeat 1 32 0 616 191 0 9 chr11 5852372 5852482 -144931071 - MER50-int LTR ERV1 -7093 112 4 1494 123 0 60 chr11 5852484 5852575 -144930978 - MER50 LTR ERV1 0 734 639 2234 116 0 0 chr11 5852575 5852886 -144930667 + AluSp SINE Alu 1 311 -2 1494 123 0 60 chr11 5852886 5853045 -144930508 - MER50 LTR ERV1 -95 639 499 241 267 84 30 chr11 5853313 5853444 -144930109 + MIR SINE MIR 105 242 -20 412 333 33 0 chr11 5853739 5853859 -144929694 + L2 LINE L2 3147 3270 -2 344 309 112 81 chr11 5853954 5854045 -144929508 + L1M4 LINE L1 4800 4887 -1259 1389 161 50 47 chr11 5854045 5854343 -144929210 + AluJo SINE Alu 1 299 -13 344 309 112 81 chr11 5854343 5854362 -144929191 + L1M4 LINE L1 4887 4904 -1242 2148 102 0 3 chr11 5854362 5854655 -144928898 - AluSq SINE Alu -21 292 1 344 309 112 81 chr11 5854655 5854963 -144928590 + L1M4 LINE L1 4904 5232 -914 250 325 100 0 chr11 5856476 5856556 -144926997 + L2 LINE L2 3226 3313 0 2067 114 0 25 chr11 5857000 5857315 -144926238 - AluSx SINE Alu -5 307 1 324 77 46 0 chr11 5857408 5857473 -144926080 + (TA)n Simple_repeat Simple_repeat 1 68 0 1919 96 0 4 chr11 5857473 5857733 -144925820 - AluSg1 SINE Alu -19 290 32 283 320 13 0 chr11 5857736 5857811 -144925742 + L2 LINE L2 3225 3300 -13 322 38 19 19 chr11 5857816 5857869 -144925684 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 26 30 0 0 chr11 5860008 5860041 -144923512 + AT_rich Low_complexity Low_complexity 1 33 0 230 362 127 32 chr11 5860322 5860692 -144922861 - L2 LINE L2 -443 2871 2467 486 245 29 36 chr11 5860721 5860860 -144922693 - MIR SINE MIR -49 213 76 360 311 0 66 chr11 5861238 5861389 -144922164 + L2 LINE L2 2933 3073 -199 232 167 0 69 chr11 5861578 5861650 -144921903 + L1ME LINE L1 5759 5818 -303 326 260 39 0 chr11 5861689 5861766 -144921787 + ERVL LTR ERVL 3654 3733 -2031 672 215 45 40 chr11 5861965 5862142 -144921411 - AluJo SINE Alu -16 296 119 810 354 13 10 chr11 5862364 5862760 -144920793 + ERVL LTR ERVL 4063 4459 -1195 1108 228 154 23 chr11 5862782 5863211 -144920342 - MLT1H LTR MaLR 0 555 35 1648 85 0 13 chr11 5863229 5863464 -144920089 - AluY SINE Alu -14 297 66 1001 83 0 0 chr11 5863464 5863596 -144919957 - AluY SINE Alu -179 132 1 1637 223 72 31 chr11 5863714 5864158 -144919395 + MLT1C LTR MaLR 6 467 0 205 26 26 51 chr11 5864455 5864494 -144919059 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 2368 137 49 91 chr11 5864645 5864981 -144918572 - L1MA8 LINE L1 -4 6287 5981 2586 36 0 0 chr11 5864981 5865289 -144918264 - AluY SINE Alu -3 308 1 2368 137 49 91 chr11 5865289 5865501 -144918052 - L1MA8 LINE L1 -310 5981 5762 2060 109 20 0 chr11 5866227 5866521 -144917032 - AluSx SINE Alu -10 302 3 1756 174 119 31 chr11 5866857 5867276 -144916277 - LTR2B LTR ERV1 -3 487 32 225 196 0 0 chr11 5867890 5867941 -144915612 + GA-rich Low_complexity Low_complexity 1 51 0 311 185 370 0 chr11 5868535 5868616 -144914937 - MER81 DNA DNA -3 111 1 2340 63 3 0 chr11 5868916 5869215 -144914338 - AluY SINE Alu -11 300 1 380 172 46 0 chr11 5869435 5869522 -144914031 - L1MC5 LINE L1 -66 7895 7805 2154 100 10 0 chr11 5869687 5869986 -144913567 - AluSx SINE Alu -10 302 1 2304 95 0 0 chr11 5870271 5870575 -144912978 + AluSq SINE Alu 1 304 -9 965 158 6 6 chr11 5871065 5871236 -144912317 - MER39 LTR ERV1 0 707 537 204 40 0 0 chr11 5871237 5871262 -144912291 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 835 177 20 0 chr11 5871264 5871411 -144912142 - FRAM SINE Alu -30 146 1 2110 133 76 129 chr11 5871412 5871654 -144911899 - MER39B LTR ERV1 -154 499 246 1807 164 0 16 chr11 5871654 5871971 -144911582 - AluJo SINE Alu 0 312 1 2110 133 76 129 chr11 5871971 5872103 -144911450 - MER39B LTR ERV1 -407 246 109 2077 116 10 0 chr11 5872103 5872406 -144911147 - AluSx SINE Alu -6 306 1 2110 133 76 129 chr11 5872406 5872430 -144911123 - MER39B LTR ERV1 -544 109 85 2213 92 3 13 chr11 5872430 5872744 -144910809 - AluSx SINE Alu -1 311 1 2110 133 76 129 chr11 5872744 5872870 -144910683 - MER39B LTR ERV1 -568 85 1 825 127 0 0 chr11 5873060 5873178 -144910375 + FLAM_C SINE Alu 7 124 -19 227 161 18 0 chr11 5873178 5873234 -144910319 + (TA)n Simple_repeat Simple_repeat 1 57 0 1865 173 31 45 chr11 5873455 5874081 -144909472 + LTR8 LTR ERV1 1 691 0 316 331 25 32 chr11 5875385 5875542 -144908011 + ERVL LTR ERVL 5140 5295 -469 2209 98 3 0 chr11 5875548 5875845 -144907708 + AluSx SINE Alu 1 298 -14 1252 190 66 22 chr11 5875895 5876169 -144907384 + AluJb SINE Alu 15 300 -12 657 25 0 0 chr11 5876268 5876347 -144907206 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 2629 86 13 5 chr11 5876774 5877148 -144906405 + L1PA13 LINE L1 5785 6161 -2 911 151 6 38 chr11 5877469 5877628 -144905925 + MER3 DNA MER1_type 56 209 0 1886 146 3 0 chr11 5877904 5878192 -144905361 + AluJb SINE Alu 1 289 -23 267 79 0 0 chr11 5878192 5878230 -144905323 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 233 234 0 96 chr11 5878593 5878687 -144904866 - MIR SINE MIR -130 132 48 25 0 0 0 chr11 5878792 5878817 -144904736 + AT_rich Low_complexity Low_complexity 1 25 0 624 198 87 12 chr11 5879293 5879465 -144904088 - MER53 DNA DNA 0 189 5 200 254 18 18 chr11 5879640 5879695 -144903858 + MIR SINE MIR 95 149 -113 214 296 28 56 chr11 5879708 5879816 -144903737 + MIR SINE MIR 48 152 -110 765 242 43 0 chr11 5879954 5880140 -144903413 + MIR SINE MIR 35 228 -34 180 125 0 0 chr11 5880215 5880247 -144903306 + (T)n Simple_repeat Simple_repeat 1 32 0 423 141 28 0 chr11 5880285 5880356 -144903197 - AluJ/FRAM SINE Alu -16 296 224 2983 222 15 15 chr11 5880536 5881188 -144902365 + MER82 DNA MER2_type 2 653 0 2118 125 3 0 chr11 5881487 5881798 -144901755 - AluSx SINE Alu 0 312 1 1281 157 126 28 chr11 5882013 5882090 -144901463 + Charlie5 DNA MER1_type 2234 2302 -322 2841 133 9 0 chr11 5882090 5882520 -144901033 + MER57B LTR ERV1 1 434 0 1281 157 126 28 chr11 5882520 5882798 -144900755 + Charlie5 DNA MER1_type 2302 2624 0 210 143 0 0 chr11 5883262 5883297 -144900256 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 197 143 48 0 chr11 5883325 5883367 -144900186 + CT-rich Low_complexity Low_complexity 3 46 0 1350 251 92 14 chr11 5885051 5885473 -144898080 - MLT1C LTR MaLR 0 467 13 1156 219 109 27 chr11 5885473 5885839 -144897714 + MSTD LTR MaLR 1 396 0 253 333 9 9 chr11 5886437 5886545 -144897008 - ERVL LTR ERVL -2405 3359 3252 1644 177 100 84 chr11 5887566 5887634 -144895919 - MLT1C LTR MaLR -2 465 400 1936 130 0 17 chr11 5887634 5887926 -144895627 + AluSq SINE Alu 2 288 -25 1644 177 100 84 chr11 5887926 5888308 -144895245 - MLT1C LTR MaLR -67 400 8 2129 114 3 0 chr11 5888390 5888687 -144894866 - AluSp SINE Alu -15 298 1 1361 210 105 18 chr11 5888736 5889069 -144894484 + MER93b LTR ERV1 12 373 0 2028 177 36 120 chr11 5889385 5890053 -144893500 + LTR9 LTR ERV1 1 612 0 2215 95 0 0 chr11 5890083 5890378 -144893175 + AluSg SINE Alu 2 296 -14 2033 119 0 3 chr11 5891473 5891783 -144891770 - AluSx SINE Alu -3 309 1 195 69 0 0 chr11 5894530 5894559 -144888994 + (TTG)n Simple_repeat Simple_repeat 3 31 0 307 154 39 0 chr11 5894844 5894896 -144888657 - L2 LINE L2 -5 3308 3255 513 309 24 63 chr11 5895138 5895390 -144888163 + L2 LINE L2 2716 2957 -357 273 300 70 20 chr11 5895457 5895557 -144887996 + L2 LINE L2 3183 3287 -26 1775 186 0 0 chr11 5895611 5895922 -144887631 + AluJb SINE Alu 1 311 -1 192 333 42 0 chr11 5895986 5896058 -144887495 - L2 LINE L2 -6 3266 3192 346 277 84 0 chr11 5896268 5896387 -144887166 + MIR SINE MIR 119 247 -15 337 218 40 198 chr11 5896410 5896482 -144887071 - L2 LINE L2 -1 3312 3230 1657 167 30 10 chr11 5896482 5896782 -144886771 + AluSx SINE Alu 2 307 -5 337 218 40 198 chr11 5896782 5897012 -144886541 - L2 LINE L2 -83 3230 3058 1743 185 7 17 chr11 5897858 5898160 -144885393 + AluJo SINE Alu 1 299 -13 1030 193 117 58 chr11 5899711 5899830 -144883723 + MLT1A1 LTR MaLR 1 112 -253 2452 120 30 79 chr11 5899830 5900118 -144883435 - MER65A LTR ERV1 0 445 187 2366 73 7 0 chr11 5900118 5900404 -144883149 - AluSp SINE Alu -25 288 1 2452 120 30 79 chr11 5900404 5900583 -144882970 - MER65A LTR ERV1 -258 187 1 1030 193 117 58 chr11 5900583 5900805 -144882748 + MLT1A1 LTR MaLR 112 362 -3 2022 141 17 7 chr11 5901079 5901376 -144882177 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 5902432 5902453 -144881100 + AT_rich Low_complexity Low_complexity 1 21 0 4312 92 17 73 chr11 5902715 5903477 -144880076 + L1PB1 LINE L1 5433 6151 0 2198 103 3 20 chr11 5904060 5904361 -144879192 + AluSq SINE Alu 9 304 -9 436 221 176 33 chr11 5904492 5904799 -144878754 + L1ME4a LINE L1 5767 6117 -4 246 81 0 0 chr11 5905089 5905126 -144878427 + (GA)n Simple_repeat Simple_repeat 2 38 0 238 282 0 13 chr11 5905926 5906004 -144877549 + L2 LINE L2 3144 3220 -93 32 0 0 0 chr11 5907254 5907286 -144876267 + AT_rich Low_complexity Low_complexity 1 32 0 1838 191 30 22 chr11 5907297 5907659 -144875894 - MLT1A1 LTR MaLR 0 365 1 40417 38 26 2 chr11 5908030 5913282 -144870271 - L1P LINE L1 -764 5382 5 31 76 0 0 chr11 5913413 5913479 -144870074 + AT_rich Low_complexity Low_complexity 1 66 0 186 255 78 0 chr11 5913491 5913542 -144870011 - L2 LINE L2 -1 3312 3258 1777 191 55 0 chr11 5913610 5913940 -144869613 - MER7A DNA MER2_type 0 346 1 2613 187 64 40 chr11 5913960 5914359 -144869194 - L1MD1 LINE L1 -9 6627 6239 2232 101 7 3 chr11 5914359 5914657 -144868896 - AluSq SINE Alu -14 299 1 2613 187 64 40 chr11 5914657 5914890 -144868663 - L1MD1 LINE L1 -397 6239 5974 1873 160 54 11 chr11 5914890 5915240 -144868313 + MLT1A1 LTR MaLR 1 365 0 2613 187 64 40 chr11 5915240 5915289 -144868264 - L1MD1 LINE L1 -662 5974 5928 * 3651 233 83 14 chr11 5915288 5916619 -144866934 - L1MD1 LINE L1 -1962 4578 3157 7449 36 0 1 chr11 5916672 5918193 -144865360 - L1PA5 LINE L1 -4 6150 4632 9024 88 19 1 chr11 5918193 5919481 -144864072 - L1P LINE L1 -4825 1321 11 1020 217 38 9 chr11 5919537 5920079 -144863474 - L1MD1 LINE L1 -3597 2943 2391 1805 141 7 10 chr11 5920079 5920383 -144863170 - MER1B DNA MER1_type 0 339 37 547 265 196 3 chr11 5920387 5920693 -144862860 - L1MD1 LINE L1 -4142 2398 2034 1422 219 39 8 chr11 5920701 5921134 -144862419 - L1ME2 LINE L1 -76 6086 5628 3843 173 18 31 chr11 5921281 5922098 -144861455 - L1MB3 LINE L1 -2 6181 5375 665 242 0 18 chr11 5922312 5922477 -144861076 + MIR SINE MIR 101 262 0 236 265 0 0 chr11 5923393 5923442 -144860111 - L2 LINE L2 -14 3258 3210 234 167 0 0 chr11 5923525 5923585 -144859968 + T-rich Low_complexity Low_complexity 1 60 0 1564 147 38 12 chr11 5923809 5924128 -144859425 + L1MA8 LINE L1 5961 6287 -4 186 43 0 0 chr11 5925326 5925349 -144858204 + (ATG)n Simple_repeat Simple_repeat 2 24 0 197 260 91 0 chr11 5925369 5925446 -144858107 - MIR SINE MIR -42 220 137 198 0 0 0 chr11 5925446 5925468 -144858085 + (T)n Simple_repeat Simple_repeat 1 22 0 40 0 0 0 chr11 5925478 5925518 -144858035 + AT_rich Low_complexity Low_complexity 1 40 0 749 169 0 0 chr11 5925518 5925672 -144857881 - L1HS LINE L1 -2 6153 6000 30 27 0 0 chr11 5926660 5926697 -144856856 + AT_rich Low_complexity Low_complexity 1 37 0 2268 118 0 0 chr11 5927682 5927986 -144855567 + AluSx SINE Alu 1 304 -8 2291 90 3 6 chr11 5929985 5930296 -144853257 - AluSx SINE Alu -2 310 1 1489 195 84 15 chr11 5931109 5931503 -144852050 - LTR37A LTR ERV1 -2 424 4 742 223 48 65 chr11 5931503 5931795 -144851758 - MER31-int LTR ERV1 -677 4259 3973 713 151 0 0 chr11 5931814 5931920 -144851633 - AluSq/x SINE Alu -207 106 1 573 230 24 24 chr11 5931920 5932085 -144851468 - MER31-int LTR ERV1 -955 3981 3817 466 88 38 0 chr11 5932746 5932826 -144850727 + GA-rich Low_complexity Low_complexity 2 84 0 379 152 152 0 chr11 5934479 5934591 -144848962 - LTR37A LTR ERV1 -285 141 13 225 132 0 0 chr11 5934946 5934984 -144848569 + (CAAAG)n Simple_repeat Simple_repeat 2 39 0 2574 30 0 0 chr11 5935170 5935467 -144848086 + AluY SINE Alu 1 297 -14 2242 125 0 10 chr11 5935825 5936138 -144847415 + AluSx SINE Alu 1 310 -2 223 244 0 0 chr11 5936823 5936868 -144846685 + C-rich Low_complexity Low_complexity 2 46 0 1592 194 115 3 chr11 5937177 5937533 -144846020 - MSTD LTR MaLR 0 396 1 2102 137 3 0 chr11 5937771 5938063 -144845490 - AluSx SINE Alu -1 311 19 2093 118 3 7 chr11 5938556 5938852 -144844701 - AluSc SINE Alu -14 295 1 388 246 205 0 chr11 5939131 5939253 -144844300 - MER5A DNA MER1_type 0 189 43 428 184 10 0 chr11 5940138 5940241 -144843312 + (TA)n Simple_repeat Simple_repeat 1 104 0 539 301 114 0 chr11 5940343 5940519 -144843034 - MIR SINE MIR -36 226 31 246 288 157 60 chr11 5940661 5940980 -144842573 - L2 LINE L2 -46 3267 2918 587 124 0 10 chr11 5940980 5941077 -144842476 + MER4A LTR ERV1 2 97 -567 310 297 0 0 chr11 5941989 5942068 -144841485 + MER5A DNA MER1_type 29 107 -71 395 272 64 0 chr11 5942088 5942213 -144841340 - L1MEc LINE L1 -4901 1495 1363 4267 75 0 4 chr11 5942215 5942771 -144840782 - MER41A LTR ERV1 0 554 1 11623 100 24 28 chr11 5942773 5945724 -144837829 - MER41A-int LTR ERV1 -4 5942 1360 306 0 0 0 chr11 5945724 5945758 -144837795 + (CA)n Simple_repeat Simple_repeat 1 34 0 4618 124 74 9 chr11 5945761 5946805 -144836748 - MER41A-int LTR ERV1 -4852 1481 1 3560 84 67 8 chr11 5946805 5947328 -144836225 - MER41A LTR ERV1 0 554 1 575 241 112 42 chr11 5947349 5947602 -144835951 - MLT1E LTR MaLR -248 319 54 339 265 47 71 chr11 5947752 5947922 -144835631 - L1MEc LINE L1 -5952 253 88 412 283 8 17 chr11 5947964 5948084 -144835469 - L2 LINE L2 -609 2705 2587 2447 77 6 6 chr11 5948414 5948727 -144834826 + AluSq SINE Alu 1 313 0 189 0 0 0 chr11 5949458 5949479 -144834074 + (T)n Simple_repeat Simple_repeat 1 21 0 189 94 0 0 chr11 5949494 5949526 -144834027 + (T)n Simple_repeat Simple_repeat 1 32 0 1320 6 0 0 chr11 5949528 5949684 -144833869 - L1HS LINE L1 0 6155 6000 504 239 35 0 chr11 5949687 5949800 -144833753 - MIR SINE MIR -114 148 32 337 293 93 7 chr11 5950444 5950584 -144832969 - L1MC4 LINE L1 -1278 6764 6613 1813 143 3 18 chr11 5950589 5950875 -144832678 - AluJo SINE Alu -30 282 1 210 330 0 11 chr11 5953354 5953442 -144830111 + CT-rich Low_complexity Low_complexity 3 89 0 21 0 0 0 chr11 5953594 5953615 -144829938 + AT_rich Low_complexity Low_complexity 1 21 0 307 291 45 18 chr11 5953899 5954009 -144829544 + L2 LINE L2 3168 3280 -33 281 377 15 0 chr11 5954387 5954517 -144829036 + L2 LINE L2 2188 2319 -995 439 343 32 32 chr11 5954687 5954903 -144828650 + MIR SINE MIR 19 234 -28 24 0 0 0 chr11 5955577 5955601 -144827952 + AT_rich Low_complexity Low_complexity 1 24 0 14205 155 37 18 chr11 5955601 5955646 -144827907 - L1MA2 LINE L1 -109 7614 7571 1965 147 7 3 chr11 5955646 5955946 -144827607 - AluSx SINE Alu -11 301 1 14205 155 37 18 chr11 5955946 5960092 -144823461 - L1MA2 LINE L1 -152 7571 3322 2151 116 0 3 chr11 5960092 5960412 -144823141 + AluSx SINE Alu 1 319 0 14205 155 37 18 chr11 5960412 5960644 -144822909 - L1MA2 LINE L1 -4401 3322 3096 501 163 10 10 chr11 5960646 5960744 -144822809 + MER4A LTR ERV1 1 98 -566 1612 160 36 14 chr11 5960744 5961081 -144822472 + MER4A LTR ERV1 261 663 -1 1258 128 68 16 chr11 5961090 5961339 -144822214 - L1MA2 LINE L1 -4476 3089 2828 4193 70 3 26 chr11 5961339 5961906 -144821647 + MER41A LTR ERV1 1 554 0 277 104 338 13 chr11 5961990 5962067 -144821486 + MER41A-int LTR ERV1 1 102 -5844 4754 136 53 30 chr11 5962076 5963283 -144820270 + MER41A-int LTR ERV1 1 1319 -4627 1932 175 59 10 chr11 5963282 5963670 -144819883 + MER41A-int LTR ERV1 1965 2371 -5166 * 714 111 133 7 chr11 5963669 5963804 -144819749 + MER57-int LTR ERV1 1866 2017 -3929 * 648 146 43 107 chr11 5963800 5963916 -144819637 + MER57-int LTR ERV1 1740 1862 -5319 * 2171 115 0 13 chr11 5963916 5964220 -144819333 + AluSx SINE Alu 1 300 -12 648 146 43 107 chr11 5964220 5964299 -144819254 + MER57-int LTR ERV1 1862 3490 -3691 9354 161 117 17 chr11 5964328 5966110 -144817443 - L1MA2 LINE L1 -5593 1972 13 615 290 60 10 chr11 5966110 5966310 -144817243 - MIR SINE MIR -3 259 50 281 317 110 0 chr11 5966412 5966494 -144817059 + L2 LINE L2 3146 3236 -36 38 66 0 28 chr11 5967336 5967442 -144816111 + AT_rich Low_complexity Low_complexity 1 103 0 808 194 37 42 chr11 5967474 5967690 -144815863 + MER96B DNA MER1_type? 202 416 -1 2050 129 4 0 chr11 5967944 5968270 -144815283 + AluSx SINE Alu 3 329 0 259 319 48 18 chr11 5968381 5968547 -144815006 - L1ME LINE L1 -421 5700 5530 247 254 54 23 chr11 5968589 5968719 -144814834 - L1M3 LINE L1 -724 5447 5314 330 312 25 33 chr11 5968957 5969204 -144814349 - L1M3 LINE L1 -1107 5039 4793 232 313 167 30 chr11 5969210 5969408 -144814145 - MIR SINE MIR -3 259 35 280 335 68 58 chr11 5969610 5969903 -144813650 - L2 LINE L2 -484 2830 2535 429 328 83 23 chr11 5971118 5971363 -144812190 + MIR SINE MIR 8 262 0 1897 152 0 30 chr11 5971591 5971888 -144811665 + AluSx SINE Alu 11 298 -14 2276 119 3 0 chr11 5972001 5972311 -144811242 + AluSx SINE Alu 1 311 -1 544 269 7 13 chr11 5972547 5972696 -144810857 + L2 LINE L2 2200 2347 -967 291 306 162 20 chr11 5972742 5973039 -144810514 - MLT1J2 LTR MaLR -45 405 67 40466 35 24 1 chr11 5973196 5978993 -144804560 - L1PA3 LINE L1 -213 5942 13 371 273 87 17 chr11 5979427 5979635 -144803918 + MLT1I LTR MaLR 93 327 -123 1885 160 10 3 chr11 5980404 5980697 -144802856 + AluSx SINE Alu 1 295 -17 241 341 99 0 chr11 5981470 5981561 -144801992 + L2 LINE L2 3122 3221 -51 21 0 0 0 chr11 5981785 5981806 -144801747 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 5981895 5981919 -144801634 + AT_rich Low_complexity Low_complexity 1 24 0 385 254 64 0 chr11 5981925 5982035 -144801518 - L1M4 LINE L1 -2924 4641 4525 1191 235 76 13 chr11 5982059 5982589 -144800964 - L1M4 LINE L1 -3414 4151 3530 1102 132 0 0 chr11 5982589 5982748 -144800805 - AluSx SINE Alu -1 311 153 751 139 0 0 chr11 5982748 5982856 -144800697 - AluSx SINE Alu -204 108 1 24 0 0 0 chr11 5983140 5983164 -144800389 + AT_rich Low_complexity Low_complexity 1 24 0 1523 100 56 0 chr11 5983174 5983405 -144800148 - L1PA16 LINE L1 -8 6158 5915 1694 136 12 37 chr11 5983407 5983731 -144799822 - L1 LINE L1 -2307 3839 3524 * 7458 161 31 27 chr11 5983729 5985271 -144798282 - L1M4 LINE L1 -4662 2905 1358 2051 197 15 6 chr11 5985272 5986049 -144797504 - L1M2 LINE L1 -652 5660 4877 2583 66 0 41 chr11 5986152 5986516 -144797037 - L1PA6 LINE L1 -1 6153 5805 393 261 82 31 chr11 5986553 5986885 -144796668 + MER57-int LTR ERV1 2455 4202 -2129 4396 229 52 62 chr11 5986888 5988378 -144795175 + MER57-int LTR ERV1 2493 3965 -906 1648 214 0 14 chr11 5988378 5988673 -144794880 - AluJo SINE Alu -21 291 1 4396 229 52 62 chr11 5988673 5988881 -144794672 + MER57-int LTR ERV1 3965 4174 -697 1720 239 68 42 chr11 5988974 5989239 -144794314 + MER57-int LTR ERV1 6614 6871 -666 2327 138 23 0 chr11 5989239 5989593 -144793960 - THE1B LTR MaLR -2 362 1 1720 239 68 42 chr11 5989593 5989845 -144793708 + MER57-int LTR ERV1 6871 7144 -393 1247 151 13 6 chr11 5989846 5990268 -144793285 + LTR54 LTR ERV1 2 510 0 285 300 22 0 chr11 5990414 5990504 -144793049 + L2 LINE L2 1614 1705 -1609 879 71 58 0 chr11 5990692 5990847 -144792706 + CT-rich Low_complexity Low_complexity 2 165 0 1986 91 14 11 chr11 5990847 5991122 -144792431 - AluSq SINE Alu -36 277 2 1958 138 3 3 chr11 5991206 5991530 -144792023 - AluSx SINE Alu 0 312 1 2273 108 10 0 chr11 5992078 5992385 -144791168 - AluSx SINE Alu -2 310 1 799 238 72 25 chr11 5992712 5992944 -144790609 + MIR SINE MIR 2 231 -31 245 257 29 29 chr11 5992989 5993059 -144790494 - MIR SINE MIR -127 81 12 246 303 67 6 chr11 5994997 5995175 -144788378 - HAL1b LINE L1 -727 621 433 26 30 0 0 chr11 5996105 5996138 -144787415 + AT_rich Low_complexity Low_complexity 1 33 0 274 284 9 17 chr11 5996248 5996364 -144787189 - L1M4 LINE L1 -1541 4605 4491 2250 116 3 0 chr11 5996456 5996759 -144786794 - AluSx SINE Alu -8 304 1 774 192 12 12 chr11 5996887 5997059 -144786494 + AluSq SINE Alu 142 313 0 181 260 31 94 chr11 5997383 5997479 -144786074 - L3b LINE CR1 -113 1470 1381 207 0 0 0 chr11 5997517 5997540 -144786013 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1782 164 0 0 chr11 5997551 5997813 -144785740 - AluSx SINE Alu -50 262 1 472 310 39 0 chr11 5997814 5997969 -144785584 + L2 LINE L2 2841 3001 -312 3641 48 119 8 chr11 5998021 5998523 -144785030 - LTR6B LTR ERV1 0 558 1 32 0 0 0 chr11 5998963 5998995 -144784558 + AT_rich Low_complexity Low_complexity 1 32 0 1897 128 0 0 chr11 5998995 5999277 -144784276 - AluSx SINE Alu -26 286 5 426 276 46 33 chr11 5999338 5999490 -144784063 + MIR SINE MIR 66 219 -43 1910 131 0 0 chr11 5999519 5999801 -144783752 + AluSx SINE Alu 20 301 -11 305 243 27 14 chr11 6000632 6000706 -144782847 + MIR SINE MIR 2 76 -186 12386 141 42 28 chr11 6000718 6001321 -144782232 - L1MA3 LINE L1 0 6305 5712 2318 84 7 0 chr11 6001321 6001631 -144781922 - AluSx SINE Alu 0 312 1 12386 141 42 28 chr11 6001631 6003865 -144779688 - L1MA3 LINE L1 -593 5712 3413 2308 102 0 0 chr11 6003865 6004178 -144779375 - AluSp SINE Alu 0 313 1 12386 141 42 28 chr11 6004178 6004803 -144778750 - L1MA3 LINE L1 -2892 3413 2798 442 298 88 18 chr11 6005001 6005172 -144778381 - MIR SINE MIR -27 235 53 358 378 82 0 chr11 6005187 6005383 -144778170 + MIR SINE MIR 2 213 -49 787 181 11 80 chr11 6006135 6006323 -144777230 + MER69A DNA AcHobo 2 176 -1 338 208 0 52 chr11 6006389 6006466 -144777087 + MIR SINE MIR 74 146 -62 323 325 138 8 chr11 6009855 6010101 -144773452 + L2 LINE L2 1727 2004 -1310 397 249 112 81 chr11 6010571 6010768 -144772785 - L2 LINE L2 0 3272 3070 5396 136 92 23 chr11 6011073 6011152 -144772401 + Tigger3b DNA MER2_type 1 73 -2955 1750 177 3 10 chr11 6011152 6011462 -144772091 + AluJo SINE Alu 1 308 -4 5396 136 92 23 chr11 6011462 6012378 -144771175 + Tigger3b DNA MER2_type 73 1065 -166 1269 340 75 41 chr11 6012488 6013384 -144770169 + L2 LINE L2 1773 2698 -616 345 47 0 0 chr11 6013658 6013701 -144769852 + (TG)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr11 6013701 6013733 -144769820 + AT_rich Low_complexity Low_complexity 1 32 0 505 263 89 93 chr11 6013783 6014030 -144769523 + L2 LINE L2 3027 3272 0 217 322 194 8 chr11 6014155 6014397 -144769156 + L2 LINE L2 2940 3226 -46 422 175 62 0 chr11 6014740 6014820 -144768733 + Tigger3b DNA MER2_type 1147 1231 0 251 264 27 55 chr11 6014907 6014998 -144768555 - MIR SINE MIR -109 99 16 2185 100 10 0 chr11 6015052 6015361 -144768192 - AluSp SINE Alu -1 312 1 496 342 25 20 chr11 6015393 6015592 -144767961 + L2 LINE L2 3069 3268 -4 1839 121 78 14 chr11 6016443 6016789 -144766764 + L1MC2 LINE L1 5977 6344 0 183 80 0 0 chr11 6016819 6016844 -144766709 + (TG)n Simple_repeat Simple_repeat 2 26 0 1748 165 7 7 chr11 6017797 6018094 -144765459 + AluJb SINE Alu 1 297 -15 237 278 24 32 chr11 6018948 6019074 -144764479 + C-rich Low_complexity Low_complexity 3 127 0 375 23 0 0 chr11 6019238 6019282 -144764271 + (GA)n Simple_repeat Simple_repeat 1 44 0 1849 284 2 2 chr11 6020866 6021285 -144762268 + LTR16A LTR ERVL 24 442 -8 311 374 168 3 chr11 6021289 6021599 -144761954 + L2 LINE L2 2482 2842 -472 288 154 0 0 chr11 6021686 6021738 -144761815 + T-rich Low_complexity Low_complexity 1 52 0 258 305 102 17 chr11 6021760 6021878 -144761675 + L2 LINE L2 2931 3058 -214 1497 214 123 106 chr11 6021886 6022526 -144761027 + MLT1E2 LTR MaLR 4 626 0 498 267 58 49 chr11 6022624 6022849 -144760704 - L2 LINE L2 -645 2669 2443 650 237 38 38 chr11 6022884 6023095 -144760458 - MIR SINE MIR -44 218 8 233 304 82 38 chr11 6023113 6023214 -144760339 + L2 LINE L2 1266 1361 -1953 267 54 0 0 chr11 6023214 6023251 -144760302 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 304 82 38 chr11 6023251 6023333 -144760220 + L2 LINE L2 1361 1457 -1857 912 291 188 9 chr11 6023333 6023901 -144759652 - L2 LINE L2 -956 2358 1689 308 82 0 20 chr11 6023911 6023960 -144759593 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 218 368 69 10 chr11 6023962 6024166 -144759387 - L2 LINE L2 -1637 1677 1462 669 294 117 35 chr11 6024167 6024562 -144758991 + MLT1J LTR MaLR 85 511 0 344 348 176 27 chr11 6024569 6024645 -144758908 - L2 LINE L2 -1855 1459 1396 207 69 0 0 chr11 6024645 6024674 -144758879 + (TG)n Simple_repeat Simple_repeat 1 29 0 344 348 176 27 chr11 6024674 6024933 -144758620 - L2 LINE L2 -1918 1396 1074 1135 162 65 148 chr11 6025011 6025363 -144758190 + MLT1B LTR MaLR 68 390 0 213 189 57 38 chr11 6025959 6026012 -144757541 - MER5A DNA MER1_type -78 111 58 2625 17 0 0 chr11 6027788 6028088 -144755465 - AluYa5 SINE Alu -11 300 1 463 250 159 6 chr11 6028879 6029055 -144754498 + MIR SINE MIR 47 249 -13 319 220 28 73 chr11 6029076 6029113 -144754440 + MIR SINE MIR 109 146 -116 188 86 29 0 chr11 6029113 6029148 -144754405 + (CAT)n Simple_repeat Simple_repeat 1 36 0 319 220 28 73 chr11 6029148 6029219 -144754334 + MIR SINE MIR 146 212 -50 4067 71 28 33 chr11 6029329 6029689 -144753864 - L1PB2 LINE L1 -5 6146 5789 2019 137 0 3 chr11 6029689 6030002 -144753551 - AluSx SINE Alu 0 312 1 4067 71 28 33 chr11 6030002 6030220 -144753333 - L1PB2 LINE L1 -362 5789 5571 1309 209 65 69 chr11 6030608 6031086 -144752467 + MLT1E2 LTR MaLR 105 606 -20 273 29 0 0 chr11 6031086 6031120 -144752433 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 209 65 69 chr11 6031120 6031141 -144752412 + MLT1E2 LTR MaLR 606 626 0 1138 193 0 5 chr11 6031311 6031513 -144752040 + AluJb SINE Alu 1 201 -111 2104 86 17 0 chr11 6031619 6031910 -144751643 - AluY SINE Alu -15 296 1 346 292 77 15 chr11 6032673 6032803 -144750750 - L2 LINE L2 -10 3303 3166 405 0 0 0 chr11 6034047 6034092 -144749461 + (TG)n Simple_repeat Simple_repeat 2 46 0 2287 158 70 2 chr11 6035087 6035487 -144748066 + MSTA LTR MaLR 2 428 0 284 383 101 15 chr11 6035531 6035857 -144747696 - L2 LINE L2 -337 2977 2624 599 296 40 6 chr11 6035877 6036053 -144747500 - MIR SINE MIR -6 256 75 814 233 33 6 chr11 6036416 6036596 -144746957 + MIR SINE MIR 78 262 0 213 351 13 0 chr11 6039911 6039988 -144743565 - L2 LINE L2 0 3272 3195 550 339 60 45 chr11 6040342 6040875 -144742678 - L2 LINE L2 -35 3237 2702 302 358 61 14 chr11 6041221 6041369 -144742184 + L2 LINE L2 2252 2406 -908 1564 209 126 26 chr11 6041485 6041915 -144741638 + MLT1G LTR MaLR 118 590 0 1106 188 27 5 chr11 6041915 6042138 -144741415 - L1ME3A LINE L1 -23 6147 5920 285 360 96 13 chr11 6042149 6042538 -144741015 + L2 LINE L2 2461 2966 -348 750 179 31 0 chr11 6042547 6042709 -144740844 - L1MD3 LINE L1 0 7995 7829 2481 65 0 0 chr11 6042709 6043019 -144740534 - AluSg SINE Alu 0 310 1 219 411 65 0 chr11 6043044 6043168 -144740385 + L2 LINE L2 2952 3083 -189 22 70 0 0 chr11 6043997 6044040 -144739513 + GC_rich Low_complexity Low_complexity 1 43 0 184 239 0 43 chr11 6044669 6044715 -144738838 - L2 LINE L2 -95 3218 3175 362 269 30 2 chr11 6045095 6045213 -144738340 - L1ME1 LINE L1 -44 6122 5992 24 0 0 0 chr11 6045858 6045882 -144737671 + AT_rich Low_complexity Low_complexity 1 24 0 194 231 292 11 chr11 6046068 6046160 -144737393 - MIR SINE MIR -61 147 30 244 274 0 0 chr11 6046617 6046668 -144736885 - L2 LINE L2 -15 3257 3207 258 255 74 47 chr11 6046680 6046829 -144736724 - L2 LINE L2 -1 3312 3160 1455 154 36 121 chr11 6046876 6047206 -144736347 + AluSx SINE Alu 1 302 0 338 335 182 36 chr11 6047215 6047935 -144735618 + L2 LINE L2 2210 3035 -237 507 261 60 22 chr11 6049377 6049511 -144734042 - MIR SINE MIR -123 139 1 584 217 43 14 chr11 6049593 6049731 -144733822 - LTR33 LTR ERVL -4 517 376 2328 98 3 10 chr11 6050317 6050613 -144732940 - AluSp SINE Alu -19 294 1 665 348 65 19 chr11 6050729 6051206 -144732347 + L2 LINE L2 1931 2429 -885 694 249 105 5 chr11 6051297 6051506 -144732047 + MIR SINE MIR 32 261 -1 197 374 119 35 chr11 6051958 6052335 -144731218 + L2 LINE L2 2824 3232 -40 207 100 0 0 chr11 6053020 6053050 -144730503 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 901 259 250 26 chr11 6053059 6053927 -144729626 - L2 LINE L2 0 3313 2245 24 32 0 0 chr11 6055386 6055417 -144728136 + AT_rich Low_complexity Low_complexity 1 31 0 885 286 186 12 chr11 6056720 6057185 -144726368 - L2 LINE L2 -2 3311 2770 251 323 66 61 chr11 6057530 6057719 -144725834 + MER5A DNA MER1_type 1 189 0 795 265 111 59 chr11 6058181 6058657 -144724896 - MLT1E2 LTR MaLR 0 626 5 227 263 0 38 chr11 6060890 6060970 -144722583 + G-rich Low_complexity Low_complexity 6 82 0 554 249 159 5 chr11 6063331 6063520 -144720033 - MIR SINE MIR -17 245 28 259 293 13 0 chr11 6064538 6064613 -144718940 - L2 LINE L2 -228 3044 2969 261 0 0 0 chr11 6064615 6064644 -144718909 + (T)n Simple_repeat Simple_repeat 1 29 0 270 388 50 16 chr11 6065057 6065178 -144718375 - L2 LINE L2 -5 3267 3143 224 280 105 21 chr11 6069352 6069495 -144714058 - L2 LINE L2 -463 2851 2697 198 0 0 0 chr11 6069499 6069521 -144714032 + (T)n Simple_repeat Simple_repeat 1 22 0 2865 113 6 3 chr11 6069687 6070190 -144713363 - HERVH LTR ERV1 -2672 5041 4489 * 5365 106 20 5 chr11 6070185 6071033 -144712520 - HERVH LTR ERV1 -3713 4000 3140 * 14348 110 10 22 chr11 6071012 6073795 -144709758 - HERVH LTR ERV1 -4718 2995 1 2626 72 97 5 chr11 6073805 6074209 -144709344 - LTR7 LTR ERV1 -9 441 1 332 194 32 0 chr11 6074563 6074687 -144708866 + (CTATT)n Simple_repeat Simple_repeat 1 128 0 499 282 106 0 chr11 6074687 6074829 -144708724 + L2 LINE L2 3116 3272 0 277 310 28 0 chr11 6074848 6074919 -144708634 + L2 LINE L2 3199 3271 -42 1128 217 134 26 chr11 6074927 6075351 -144708202 - MLT1C LTR MaLR 0 467 1 283 273 75 127 chr11 6075386 6075823 -144707730 + L2 LINE L2 2628 3052 -220 554 167 80 60 chr11 6077942 6078064 -144705489 - MER5C DNA MER1_type 0 324 197 2420 103 0 0 chr11 6078064 6078375 -144705178 + AluSq SINE Alu 1 311 -2 554 167 80 60 chr11 6078375 6078402 -144705151 - MER5C DNA MER1_type -127 197 172 1524 153 11 0 chr11 6078410 6078672 -144704881 - L1MD3 LINE L1 -5 7990 7726 736 206 39 7 chr11 6078674 6078829 -144704724 - MER5C DNA MER1_type -164 160 1 258 32 0 0 chr11 6079146 6079177 -144704376 + (T)n Simple_repeat Simple_repeat 1 31 0 584 191 0 9 chr11 6079177 6079287 -144704266 - MER50-int LTR ERV1 -7093 112 4 1408 128 0 60 chr11 6079289 6079380 -144704173 - MER50 LTR ERV1 0 734 639 2399 115 0 0 chr11 6079380 6079692 -144703861 + AluSp SINE Alu 1 312 -1 1408 128 0 60 chr11 6079692 6079851 -144703702 - MER50 LTR ERV1 -95 639 499 243 267 84 30 chr11 6080119 6080250 -144703303 + MIR SINE MIR 105 242 -20 410 333 33 0 chr11 6080545 6080665 -144702888 + L2 LINE L2 3147 3270 -2 1537 162 50 44 chr11 6080851 6081148 -144702405 + AluJo SINE Alu 1 299 -13 2264 106 0 3 chr11 6081167 6081460 -144702093 - AluSq SINE Alu -21 292 1 1665 99 14 133 chr11 6081460 6081822 -144701731 + MER4E LTR ERV1 461 779 0 3121 167 23 92 chr11 6081831 6081986 -144701567 + LTR8 LTR ERV1 2 166 -525 2209 82 32 7 chr11 6081986 6082267 -144701286 - AluSq SINE Alu -19 294 7 3121 167 23 92 chr11 6082267 6082852 -144700701 + LTR8 LTR ERV1 166 691 0 817 290 28 0 chr11 6082917 6083134 -144700419 + LTR16A LTR ERVL 215 437 -13 2654 59 0 0 chr11 6083268 6083575 -144699978 + AluY SINE Alu 1 307 -4 393 168 81 117 chr11 6083938 6084051 -144699502 - MER34 LTR ERV1 0 778 449 1230 90 19 0 chr11 6084090 6084246 -144699307 + AluSp SINE Alu 131 289 -24 558 0 0 0 chr11 6084246 6084308 -144699245 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2245 110 47 69 chr11 6084586 6084865 -144698688 + LTR23 LTR ERV1 1 285 -152 4739 107 25 71 chr11 6084865 6085217 -144698336 - MER4E LTR ERV1 0 779 412 2193 122 0 3 chr11 6085217 6085512 -144698041 + AluSc SINE Alu 1 294 -15 4739 107 25 71 chr11 6085512 6085740 -144697813 - MER4E LTR ERV1 -367 412 175 2139 109 0 11 chr11 6085740 6086024 -144697529 + AluSq SINE Alu 1 281 -32 4739 107 25 71 chr11 6086024 6086050 -144697503 - MER4E LTR ERV1 -604 175 149 396 0 0 0 chr11 6086050 6086094 -144697459 + (TA)n Simple_repeat Simple_repeat 2 45 0 4739 107 25 71 chr11 6086094 6086302 -144697251 - MER4E LTR ERV1 -630 149 1 2245 110 47 69 chr11 6086302 6086469 -144697084 + LTR23 LTR ERV1 285 437 0 977 79 0 7 chr11 6086627 6086766 -144696787 + MER4C LTR ERV1 1 138 -327 1397 92 0 5 chr11 6086768 6086952 -144696601 + AluSp SINE Alu 130 312 -1 1917 85 115 3 chr11 6086952 6087257 -144696296 + MER4C LTR ERV1 127 465 0 557 223 121 25 chr11 6087259 6087416 -144696137 + MIR SINE MIR 53 224 -38 946 191 126 65 chr11 6087418 6087800 -144695753 - LTR56 LTR ERV1 -21 424 20 180 0 0 0 chr11 6087802 6087822 -144695731 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 292 98 98 0 chr11 6088014 6088065 -144695488 + MIR SINE MIR 102 157 -105 744 176 53 18 chr11 6088067 6088237 -144695316 - LTR49 LTR ERV1 0 595 420 451 174 214 8 chr11 6088235 6088534 -144695019 - LTR29 LTR ERV1 -198 424 1 * 344 269 28 9 chr11 6088534 6088642 -144694911 + MIR SINE MIR 153 262 0 932 133 0 47 chr11 6091119 6091269 -144692284 - FLAM_C SINE Alu 0 143 1 2397 98 10 3 chr11 6091274 6091580 -144691973 - AluSc SINE Alu -1 308 1 695 227 133 10 chr11 6095431 6095634 -144687919 - MIR SINE MIR -20 242 15 269 351 137 16 chr11 6096343 6096591 -144686962 + L2 LINE L2 2951 3228 -44 684 294 38 13 chr11 6096971 6097206 -144686347 + L2 LINE L2 3073 3313 0 201 333 49 12 chr11 6097640 6097721 -144685832 + MIR SINE MIR 19 102 -106 1375 315 79 28 chr11 6097727 6098570 -144684983 + L2 LINE L2 1931 2817 -497 334 338 152 21 chr11 6098606 6098988 -144684565 + L2 LINE L2 2881 3312 -1 2241 109 3 3 chr11 6099042 6099344 -144684209 + AluSx SINE Alu 1 302 -10 229 204 0 0 chr11 6102845 6102889 -144680664 + GA-rich Low_complexity Low_complexity 1 44 0 417 340 66 33 chr11 6105130 6105465 -144678088 + L2 LINE L2 2550 2895 -419 220 322 91 16 chr11 6105656 6105777 -144677776 + L2 LINE L2 3162 3291 -22 184 135 19 19 chr11 6105789 6105841 -144677712 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 445 290 76 58 chr11 6106252 6106476 -144677077 + Charlie8 DNA MER1_type 12 239 -2178 701 177 38 144 chr11 6106484 6106556 -144676997 + L1MC5 LINE L1 7203 7281 -680 2569 26 16 7 chr11 6106556 6106860 -144676693 - AluYb8 SINE Alu -11 307 1 701 177 38 144 chr11 6106860 6107154 -144676399 + L1MC5 LINE L1 7281 7530 -431 702 193 0 0 chr11 6107155 6107274 -144676279 + AluJo/FLAM SINE Alu 2 120 -192 2398 109 3 0 chr11 6107274 6107585 -144675968 - AluSq SINE Alu -1 312 1 860 181 0 0 chr11 6107585 6107718 -144675835 - AluJb SINE Alu -177 135 3 607 197 67 84 chr11 6107743 6107855 -144675698 + L1MC5 LINE L1 7629 7741 -220 1518 219 0 17 chr11 6107855 6108156 -144675397 - AluJb SINE Alu -16 296 1 607 197 67 84 chr11 6108156 6108327 -144675226 + L1MC5 LINE L1 7741 7907 -54 307 68 0 0 chr11 6108833 6108877 -144674676 + AluSc SINE Alu 250 293 -6 576 299 73 17 chr11 6108931 6109165 -144674388 + MIR SINE MIR 2 248 -14 264 189 0 0 chr11 6109614 6109688 -144673865 + CT-rich Low_complexity Low_complexity 2 75 0 2356 101 6 16 chr11 6110916 6111232 -144672321 - AluSq SINE Alu 0 313 1 884 267 50 23 chr11 6111236 6111536 -144672017 + L2 LINE L2 3006 3313 0 1720 56 112 72 chr11 6112301 6112552 -144671001 - AluSq SINE Alu -52 261 1 331 366 50 24 chr11 6112754 6113117 -144670436 + L2 LINE L2 2684 3059 -213 401 329 36 0 chr11 6114116 6114256 -144669297 - L2 LINE L2 -24 3248 3104 241 158 105 66 chr11 6114235 6114311 -144669242 + L2 LINE L2 3231 3309 -4 * 1195 317 113 29 chr11 6114530 6115499 -144668054 + L2 LINE L2 1527 2577 -737 2157 96 4 7 chr11 6115527 6115807 -144667746 - AluSx SINE Alu -16 296 18 668 290 90 30 chr11 6115824 6116329 -144667224 + L2 LINE L2 2772 3313 0 1583 281 152 29 chr11 6116341 6117210 -144666343 - L2 LINE L2 -609 2705 1730 29 47 0 0 chr11 6117860 6117903 -144665650 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 6118198 6118219 -144665334 + GC_rich Low_complexity Low_complexity 1 21 0 529 289 65 9 chr11 6118309 6118520 -144665033 - MIR SINE MIR 0 262 39 1473 157 73 4 chr11 6118829 6119103 -144664450 - AluJo SINE Alu -19 293 1 403 208 33 25 chr11 6119315 6119435 -144664118 - L1MC5 LINE L1 -21 7940 7820 233 250 0 18 chr11 6119538 6119594 -144663959 - L2 LINE L2 -232 3040 2986 189 0 0 0 chr11 6119610 6119631 -144663922 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 774 339 65 20 chr11 6119631 6119960 -144663593 - L2 LINE L2 -5 3267 2954 2152 161 44 53 chr11 6119960 6120141 -144663412 + MSTA LTR MaLR 1 182 -246 2092 112 3 11 chr11 6120141 6120451 -144663102 + AluSq SINE Alu 1 308 0 2152 161 44 53 chr11 6120451 6120626 -144662927 + MSTA LTR MaLR 182 356 -72 2517 87 0 0 chr11 6120626 6120936 -144662617 - AluY SINE Alu -1 310 1 2152 161 44 53 chr11 6120936 6121007 -144662546 + MSTA LTR MaLR 356 426 -2 774 339 65 20 chr11 6121007 6121439 -144662114 - L2 LINE L2 -318 2954 2425 662 203 0 7 chr11 6122291 6122429 -144661124 - FLAM_C SINE Alu -4 139 3 653 319 62 53 chr11 6122461 6122910 -144660643 - L2 LINE L2 -1142 2172 1720 3858 132 18 26 chr11 6122953 6123672 -144659881 + L1MA7 LINE L1 5576 6288 -3 2253 93 0 27 chr11 6124028 6124328 -144659225 - AluSg SINE Alu -18 292 1 1187 284 105 59 chr11 6124421 6124930 -144658623 + MLT1K LTR MaLR 3 540 -48 2020 134 3 3 chr11 6124930 6125222 -144658331 - AluSx SINE Alu -15 297 6 1187 284 105 59 chr11 6125222 6125257 -144658296 + MLT1K LTR MaLR 540 572 -16 276 216 86 60 chr11 6125292 6125408 -144658145 + LTR50 LTR ERVL 17 135 -660 428 258 102 21 chr11 6125586 6125772 -144657781 + LTR33A LTR ERVL 323 523 0 24 0 0 0 chr11 6126021 6126045 -144657508 + AT_rich Low_complexity Low_complexity 1 24 0 1738 171 11 7 chr11 6126045 6126326 -144657227 - AluJo SINE Alu -30 282 1 659 335 47 35 chr11 6126988 6127418 -144656135 + L2 LINE L2 2466 2900 -414 1708 209 8 11 chr11 6127800 6128163 -144655390 + MLT1A1 LTR MaLR 4 365 0 2448 286 114 32 chr11 6131232 6131954 -144651599 + L2 LINE L2 1738 2399 -914 2195 104 10 3 chr11 6131954 6132243 -144651310 - AluSq SINE Alu -22 291 1 2448 286 114 32 chr11 6132243 6132962 -144650591 + L2 LINE L2 2399 3309 -4 2019 161 0 3 chr11 6133086 6133397 -144650156 - AluJb SINE Alu -2 310 1 1213 59 0 0 chr11 6133713 6133849 -144649704 + AluSx SINE Alu 1 136 -177 1298 110 0 0 chr11 6133879 6134065 -144649488 + AluSx SINE Alu 121 306 0 1697 153 67 27 chr11 6134219 6134519 -144649034 - AluJb SINE Alu 0 312 1 193 403 131 14 chr11 6136419 6136838 -144646715 - L2 LINE L2 -1 3271 2804 230 191 0 32 chr11 6137023 6137086 -144646467 + (CCA)n Simple_repeat Simple_repeat 3 63 0 279 114 0 0 chr11 6137590 6137634 -144645919 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 666 345 74 30 chr11 6137636 6138068 -144645485 - L2 LINE L2 -15 3257 2807 289 331 222 3 chr11 6138113 6138424 -144645129 - L2 LINE L2 -897 2417 2039 580 252 60 13 chr11 6138448 6138599 -144644954 - MER91A DNA MER1_type -16 180 23 180 315 18 36 chr11 6138628 6138739 -144644814 - L2 LINE L2 -1287 2027 1919 216 0 0 0 chr11 6139329 6139353 -144644200 + (A)n Simple_repeat Simple_repeat 1 24 0 426 284 226 8 chr11 6140567 6140810 -144642743 + L2 LINE L2 3017 3312 -1 1251 182 13 98 chr11 6143041 6143437 -144640116 + MLT1A1 LTR MaLR 1 362 -3 397 295 85 0 chr11 6143437 6143566 -144639987 - MIR SINE MIR -104 158 19 2096 169 61 2 chr11 6143588 6143997 -144639556 + MER63B DNA MER1_type 2 434 -2 334 322 11 0 chr11 6144022 6144109 -144639444 + L2 LINE L2 3210 3297 -16 2383 95 3 3 chr11 6144318 6144623 -144638930 - AluY SINE Alu -6 305 1 760 309 96 13 chr11 6144785 6145312 -144638241 + L2 LINE L2 2737 3313 0 2508 94 0 0 chr11 6146023 6146330 -144637223 - AluSq SINE Alu -6 307 1 194 338 42 0 chr11 6146554 6146625 -144636928 - L2 LINE L2 -7 3265 3192 537 328 179 33 chr11 6148294 6149200 -144634353 + L2 LINE L2 2233 3272 0 181 107 0 0 chr11 6150292 6150320 -144633233 - L2 LINE L2 0 3272 3245 649 272 96 43 chr11 6150398 6150944 -144632609 - L2 LINE L2 -213 3059 2428 202 368 35 18 chr11 6151566 6151680 -144631873 + L2 LINE L2 2931 3046 -226 431 298 111 17 chr11 6151750 6151931 -144631622 + L2 LINE L2 3111 3308 -5 279 211 293 0 chr11 6151956 6152089 -144631464 + L2 LINE L2 2297 2468 -846 254 178 0 0 chr11 6152204 6152249 -144631304 - L2 LINE L2 -94 3178 3134 203 100 0 25 chr11 6152249 6152289 -144631264 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1999 134 13 39 chr11 6152845 6153151 -144630402 + AluJb SINE Alu 1 298 -14 563 247 147 0 chr11 6153954 6154124 -144629429 - MIR SINE MIR -62 200 6 588 284 48 52 chr11 6207487 6207737 -144575816 + MIR SINE MIR 6 254 -8 211 301 108 52 chr11 6207823 6208036 -144575517 - L2 LINE L2 -220 3052 2828 197 222 122 56 chr11 6208263 6208353 -144575200 - MIR SINE MIR -148 114 19 * 735 361 138 7 chr11 6208337 6209057 -144574496 - L2 LINE L2 -681 2633 1820 221 320 0 13 chr11 6209469 6209547 -144574006 + L2 LINE L2 290 366 -2948 346 135 0 0 chr11 6209551 6209603 -144573950 - MIR SINE MIR -28 234 183 2423 96 0 19 chr11 6209622 6209936 -144573617 - AluSx SINE Alu -2 310 3 462 298 186 34 chr11 6209962 6210408 -144573145 + L2 LINE L2 386 899 -2415 294 243 68 0 chr11 6210477 6210551 -144573002 + L2 LINE L2 2605 2683 -631 547 234 60 6 chr11 6211016 6211183 -144572370 + MER104 DNA MER2_type 3 178 -2 416 198 279 10 chr11 6211893 6212090 -144571463 - L1ME4a LINE L1 -15 6106 5857 201 294 71 35 chr11 6212168 6212253 -144571300 - MIR SINE MIR -155 107 20 11703 108 35 51 chr11 6215137 6217126 -144566427 - Tigger1 DNA MER2_type -462 1956 1 670 292 146 13 chr11 6218102 6218582 -144564971 + L2 LINE L2 2683 3220 -93 336 240 55 110 chr11 6218600 6218681 -144564872 + MIR SINE MIR 11 82 -180 1974 161 0 13 chr11 6218681 6218997 -144564556 - AluJb SINE Alu 0 312 1 336 240 55 110 chr11 6218997 6219061 -144564492 + MIR SINE MIR 82 148 -114 891 153 0 8 chr11 6219062 6219193 -144564360 + FLAM_A SINE Alu 2 131 -2 2426 97 0 0 chr11 6219210 6219520 -144564033 + AluSg SINE Alu 1 310 0 27 62 0 0 chr11 6219522 6219570 -144563983 + AT_rich Low_complexity Low_complexity 1 48 0 363 268 134 0 chr11 6219570 6219682 -144563871 + MIR SINE MIR 136 262 0 266 268 24 0 chr11 6220228 6220310 -144563243 - L2 LINE L2 -2914 400 317 830 270 68 89 chr11 6220411 6220877 -144562676 + L2 LINE L2 2736 3210 -103 603 114 19 19 chr11 6220877 6220982 -144562571 + L1MA4A LINE L1 6188 6292 -11 830 270 68 89 chr11 6220982 6220997 -144562556 + L2 LINE L2 3210 3224 -89 2254 103 3 3 chr11 6220997 6221298 -144562255 + AluSx SINE Alu 7 307 -5 830 270 68 89 chr11 6221298 6221406 -144562147 + L2 LINE L2 3224 3313 0 536 236 31 146 chr11 6221816 6222102 -144561451 - MER102a DNA MER1_type -1087 330 83 2313 101 0 7 chr11 6222102 6222398 -144561155 - AluSq SINE Alu -19 294 1 536 236 31 146 chr11 6222398 6222433 -144561120 - MER102a DNA MER1_type -1334 83 46 271 286 82 58 chr11 6222583 6222754 -144560799 + MIR SINE MIR 87 261 -1 2446 50 0 7 chr11 6224247 6224530 -144559023 - AluY SINE Alu -30 281 1 409 310 25 49 chr11 6224636 6224839 -144558714 + L2 LINE L2 3062 3259 -54 1098 268 29 20 chr11 6225219 6225562 -144557991 - L1ME3 LINE L1 0 6162 5817 802 218 53 0 chr11 6225666 6225854 -144557699 - L2 LINE L2 -971 2343 2146 262 245 92 31 chr11 6226084 6226182 -144557371 + LTR67 LTR ERVL 97 200 -357 280 287 43 0 chr11 6226351 6226445 -144557108 + LTR67 LTR ERVL 458 555 -2 288 0 0 0 chr11 6226521 6226553 -144557000 + (TG)n Simple_repeat Simple_repeat 2 33 0 430 315 105 6 chr11 6229054 6229235 -144554318 + MIR SINE MIR 48 246 -16 247 272 48 40 chr11 6229391 6229516 -144554037 + L2 LINE L2 2443 2568 -746 258 32 0 0 chr11 6229640 6229671 -144553882 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 544 252 37 7 chr11 6230339 6230474 -144553079 + MIR SINE MIR 15 153 -109 621 322 41 68 chr11 6230728 6231429 -144552124 + L2 LINE L2 2553 3237 -35 1361 295 212 33 chr11 6231461 6231923 -144551630 - L2 LINE L2 -8 3305 2927 1833 166 3 14 chr11 6231923 6232219 -144551334 + AluJo SINE Alu 1 293 -19 1361 295 212 33 chr11 6232219 6232441 -144551112 - L2 LINE L2 -386 2927 2746 875 165 0 0 chr11 6232441 6232574 -144550979 + FLAM_C SINE Alu 1 133 0 1361 295 212 33 chr11 6232574 6233206 -144550347 - L2 LINE L2 -567 2746 1747 378 0 0 0 chr11 6233294 6233336 -144550217 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 247 233 96 14 chr11 6234059 6234132 -144549421 - L2 LINE L2 -45 3227 3149 205 284 49 107 chr11 6234373 6234598 -144548955 - L2 LINE L2 -458 2856 2645 875 239 0 0 chr11 6234807 6234983 -144548570 - FRAM SINE Alu -2 174 1 967 303 130 23 chr11 6234983 6235498 -144548055 - L2 LINE L2 -954 2360 1791 431 279 38 94 chr11 6235941 6236228 -144547325 - L2 LINE L2 -7 3265 2995 224 0 0 61 chr11 6236382 6236415 -144547138 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 200 400 24 0 chr11 6236416 6236541 -144547012 + L2 LINE L2 2415 2542 -772 266 271 132 78 chr11 6236549 6236678 -144546875 + MIR3 SINE MIR 38 173 -35 278 300 0 0 chr11 6237005 6237075 -144546478 + L2 LINE L2 3197 3266 -6 257 283 261 7 chr11 6237131 6237269 -144546284 + L3 LINE CR1 1314 1486 -91 214 120 20 60 chr11 6237772 6237822 -144545731 + G-rich Low_complexity Low_complexity 3 50 0 26 82 0 0 chr11 6238281 6238342 -144545211 + GC_rich Low_complexity Low_complexity 1 61 0 213 237 0 41 chr11 6238422 6238519 -144545034 + C-rich Low_complexity Low_complexity 2 94 0 404 203 175 68 chr11 6239063 6239240 -144544313 - MIR SINE MIR -17 245 50 783 284 50 67 chr11 6239939 6240093 -144543460 + L2 LINE L2 2864 3019 -253 2391 58 0 32 chr11 6240093 6240402 -144543151 - AluY SINE Alu -12 299 1 783 284 50 67 chr11 6240402 6240663 -144542890 + L2 LINE L2 3019 3272 0 474 248 67 0 chr11 6245115 6245220 -144538333 - L2 LINE L2 -3 3310 3199 256 313 36 18 chr11 6246970 6247082 -144536471 - MIR SINE MIR -40 222 109 296 351 90 45 chr11 6247874 6248162 -144535391 + L2 LINE L2 1138 1438 -1876 209 300 58 4 chr11 6248242 6248313 -144535240 - MIR SINE MIR -133 75 3 296 286 101 8 chr11 6248322 6248441 -144535112 - MIR SINE MIR -10 252 123 2425 73 0 17 chr11 6248503 6248805 -144534748 - AluSg SINE Alu -13 297 1 190 329 14 14 chr11 6249117 6249187 -144534366 - MIR SINE MIR -173 89 20 1611 304 220 45 chr11 6249666 6251696 -144531857 + L2 LINE L2 665 3061 -211 2255 119 47 39 chr11 6252791 6253152 -144530401 - THE1B LTR MaLR 0 364 1 449 260 67 0 chr11 6253905 6254009 -144529544 + L2 LINE L2 3197 3307 -6 1747 134 28 14 chr11 6254340 6254631 -144528922 - AluSq SINE Alu -14 299 5 30 0 0 0 chr11 6254704 6254734 -144528819 + AT_rich Low_complexity Low_complexity 1 30 0 363 324 105 32 chr11 6254943 6255570 -144527983 + HAL1b LINE L1 62 734 -614 239 222 0 37 chr11 6255619 6255673 -144527880 + MLT1K LTR MaLR 337 388 -200 450 292 38 52 chr11 6255775 6256024 -144527529 + MLT1L LTR MaLR 109 416 -199 307 198 74 12 chr11 6256120 6256201 -144527352 + MLT1L LTR MaLR 437 522 -93 213 39 0 0 chr11 6256201 6256227 -144527326 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1777 152 7 11 chr11 6257120 6257389 -144526164 - AluJo SINE Alu -44 268 1 534 104 13 0 chr11 6258461 6258538 -144525015 - L1PA15 LINE L1 -6 6159 6082 2179 113 7 0 chr11 6258638 6258930 -144524623 - AluSq SINE Alu -19 294 1 13679 160 13 4 chr11 6258930 6261125 -144522428 - L1M1 LINE L1 -5106 2459 245 2049 218 59 49 chr11 6261129 6261249 -144522304 + L1M4 LINE L1 2933 3050 -3096 2354 83 0 32 chr11 6261249 6261563 -144521990 + AluSx SINE Alu 1 304 -8 2049 218 59 49 chr11 6261563 6262014 -144521539 + L1M4 LINE L1 3050 3515 -2631 414 0 0 0 chr11 6262014 6262060 -144521493 + (CA)n Simple_repeat Simple_repeat 1 46 0 2049 218 59 49 chr11 6262060 6262180 -144521373 + L1M4 LINE L1 3515 3632 -2514 294 95 0 0 chr11 6262181 6262223 -144521330 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1413 199 0 31 chr11 6262247 6262533 -144521020 - AluJo SINE Alu 0 312 36 330 361 57 0 chr11 6262557 6262715 -144520838 - L1M4 LINE L1 -529 5655 5489 755 182 42 0 chr11 6262739 6262882 -144520671 + MIR SINE MIR 21 169 -93 978 118 0 0 chr11 6263480 6263615 -144519938 - AluSq/x SINE Alu -174 139 5 413 313 68 11 chr11 6263619 6263795 -144519758 + L2 LINE L2 3128 3313 0 940 176 140 0 chr11 6263974 6264167 -144519386 - MLT1A1 LTR MaLR 0 365 146 740 137 11 0 chr11 6264169 6264350 -144519203 - L1MA9 LINE L1 -17 6295 6017 * 2032 116 9 19 chr11 6264349 6264668 -144518885 + L1MA9 LINE L1 5604 5919 -393 838 176 0 13 chr11 6264684 6264837 -144518716 - MLT1A1 LTR MaLR -214 151 1 473 254 9 0 chr11 6264956 6265070 -144518483 - HAL1 LINE L1 -815 1692 1578 1815 137 29 11 chr11 6265088 6265365 -144518188 - AluJb SINE Alu -26 286 5 343 291 55 24 chr11 6265526 6265653 -144517900 - L2 LINE L2 0 3272 3142 305 278 93 9 chr11 6268137 6268245 -144515308 + MIR SINE MIR 120 236 -26 419 276 35 25 chr11 6268472 6268675 -144514878 + L1MC4 LINE L1 7820 8024 -18 1696 182 55 0 chr11 6268733 6269024 -144514529 - AluJo SINE Alu -5 307 1 992 60 0 0 chr11 6269070 6269203 -144514350 - L1P4 LINE L1 -729 5432 5300 590 168 36 15 chr11 6269314 6269451 -144514102 - L1MA3 LINE L1 -255 6050 5911 4578 203 126 12 chr11 6269452 6270872 -144512681 - MER52A LTR ERV1 0 1755 1 15010 166 25 17 chr11 6270872 6271492 -144512061 - L1MA3 LINE L1 -392 5913 5300 2021 129 13 29 chr11 6271492 6271803 -144511750 - AluSx SINE Alu -6 306 1 2089 125 0 42 chr11 6271807 6272118 -144511435 - AluSq SINE Alu -15 298 1 15010 166 25 17 chr11 6272118 6275042 -144508511 - L1MA3 LINE L1 -1007 5298 2316 680 254 57 63 chr11 6275182 6275516 -144508037 + L1ME4a LINE L1 5518 5849 -272 5897 225 48 35 chr11 6275597 6276193 -144507360 - L1M4 LINE L1 -1278 4868 4281 2175 107 0 7 chr11 6276193 6276491 -144507062 - AluSc SINE Alu -13 296 1 5897 225 48 35 chr11 6276491 6277688 -144505865 - L1M4 LINE L1 -1865 4281 3051 501 171 0 0 chr11 6277692 6277768 -144505785 - FLAM SINE Alu -16 127 52 1044 261 93 66 chr11 6277781 6278416 -144505137 - L1MEc LINE L1 -4337 2059 1408 668 274 39 6 chr11 6278425 6278604 -144504949 - MLT1J1 LTR MaLR -261 185 1 1927 122 37 17 chr11 6279020 6279316 -144504237 - AluSg SINE Alu -8 302 1 275 206 79 20 chr11 6279651 6279765 -144503788 + L1MC/D LINE L1 5718 5851 -313 249 213 126 63 chr11 6279836 6279963 -144503590 + LTR50 LTR ERVL 23 157 -638 648 276 121 31 chr11 6280141 6280464 -144503089 + LTR50 LTR ERVL 442 793 -2 210 87 65 0 chr11 6281693 6281739 -144501814 + (TA)n Simple_repeat Simple_repeat 1 49 0 962 206 25 0 chr11 6281740 6281900 -144501653 - FRAM SINE Alu -2 164 1 703 287 141 23 chr11 6282470 6282860 -144500693 - MLT1J2 LTR MaLR -14 436 1 913 269 72 31 chr11 6282911 6283260 -144500293 - L2 LINE L2 -337 2977 2615 375 205 0 24 chr11 6283991 6284074 -144499479 + L2 LINE L2 1354 1434 -1880 223 224 105 13 chr11 6284236 6284312 -144499241 + MIR SINE MIR 164 246 -16 586 217 28 21 chr11 6284360 6284503 -144499050 + MER104 DNA Tc2 35 178 -2 330 326 29 36 chr11 6284914 6285052 -144498501 + L2 LINE L2 3104 3240 -32 1782 156 44 0 chr11 6286958 6287228 -144496325 - AluJb SINE Alu -30 282 1 3609 211 78 75 chr11 6287452 6288744 -144494809 + L1MC4 LINE L1 6658 7953 -89 21 36 0 0 chr11 6289325 6289353 -144494200 + AT_rich Low_complexity Low_complexity 1 28 0 246 62 0 0 chr11 6289524 6289556 -144493997 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1051 284 39 70 chr11 6289556 6289832 -144493721 - L2 LINE L2 -13 3300 3044 2320 96 0 0 chr11 6289832 6290125 -144493428 + AluSg SINE Alu 1 293 -17 1051 284 39 70 chr11 6290125 6290330 -144493223 - L2 LINE L2 -269 3044 2834 222 37 0 0 chr11 6291301 6291328 -144492225 + (GGCTG)n Simple_repeat Simple_repeat 2 28 0 367 321 62 55 chr11 6292658 6292948 -144490605 - L2 LINE L2 -49 3223 2932 725 309 73 36 chr11 6293746 6294076 -144489477 - L2 LINE L2 -431 2883 2542 2292 114 7 3 chr11 6295859 6296167 -144487386 + AluSx SINE Alu 1 309 -3 311 333 44 90 chr11 6296609 6296906 -144486647 - L2 LINE L2 0 3272 2990 1930 136 0 36 chr11 6296906 6297215 -144486338 + AluJo SINE Alu 1 298 -14 311 333 44 90 chr11 6297215 6297238 -144486315 - L2 LINE L2 -282 2990 2967 792 242 34 86 chr11 6297243 6297416 -144486137 + L2 LINE L2 2998 3148 -165 2130 85 0 4 chr11 6297416 6297688 -144485865 - AluY SINE Alu -6 305 35 792 242 34 86 chr11 6297688 6297841 -144485712 + L2 LINE L2 3148 3307 -6 2182 121 41 89 chr11 6298007 6298242 -144485311 + MLT2C1 LTR ERVL 1 209 -188 862 191 56 31 chr11 6298242 6298404 -144485149 + FRAM SINE Alu 1 166 0 2182 121 41 89 chr11 6298404 6298583 -144484970 + MLT2C1 LTR ERVL 209 395 -2 330 324 97 0 chr11 6298595 6298771 -144484782 - L2 LINE L2 -1903 1411 1219 924 183 11 11 chr11 6298805 6298984 -144484569 - AluJb SINE Alu -7 305 140 761 254 141 5 chr11 6299126 6299346 -144484207 - MIR SINE MIR -3 259 14 740 274 115 10 chr11 6299374 6299688 -144483865 - L2 LINE L2 -5 3308 2962 804 264 204 39 chr11 6299715 6300121 -144483432 + MLT1J LTR MaLR 9 481 -30 2019 208 46 59 chr11 6300129 6300152 -144483401 + MLT1E2 LTR MaLR 1 23 -603 3794 107 27 4 chr11 6300152 6300667 -144482886 + MER1A DNA MER1_type 1 527 0 2019 208 46 59 chr11 6300667 6301283 -144482270 + MLT1E2 LTR MaLR 23 620 -6 230 154 0 0 chr11 6301289 6301328 -144482225 - MLT2B1 LTR ERVL -4 410 372 * 1665 174 47 4 chr11 6301322 6301674 -144481879 - MLT2B1 LTR ERVL -97 418 2 838 163 15 0 chr11 6301674 6301809 -144481744 + FLAM_C SINE Alu 1 137 -6 1798 220 58 111 chr11 6301842 6302598 -144480955 - L2 LINE L2 -352 2962 2247 2524 42 0 7 chr11 6302624 6302931 -144480622 - AluY SINE Alu -6 305 1 2293 110 0 0 chr11 6305675 6305985 -144477568 - AluSg SINE Alu 0 310 1 2066 122 0 3 chr11 6306085 6306379 -144477174 - AluSx SINE Alu -15 297 5 404 268 74 21 chr11 6306848 6307038 -144476515 - L2 LINE L2 0 3313 3114 243 330 30 0 chr11 6307411 6307511 -144476042 + L2 LINE L2 3211 3313 0 189 0 0 0 chr11 6308809 6308830 -144474723 + (A)n Simple_repeat Simple_repeat 1 21 0 2142 99 3 7 chr11 6308834 6309138 -144474415 + AluSx SINE Alu 1 303 -9 324 283 117 38 chr11 6309141 6309381 -144474172 + L2 LINE L2 2033 2291 -1023 425 300 159 5 chr11 6310485 6310705 -144472848 - MIR SINE MIR 0 262 9 189 121 0 0 chr11 6313035 6313068 -144470485 + (CA)n Simple_repeat Simple_repeat 2 34 0 309 274 17 43 chr11 6313791 6313908 -144469645 - L2 LINE L2 -569 2745 2632 234 313 178 24 chr11 6314161 6314508 -144469045 + L2 LINE L2 2649 3058 -214 34 24 0 0 chr11 6314968 6315009 -144468544 + GC_rich Low_complexity Low_complexity 1 41 0 970 320 167 18 chr11 6315710 6316733 -144466820 - L2 LINE L2 -209 3063 1916 1263 129 5 5 chr11 6316744 6316938 -144466615 - L1PA13 LINE L1 -14 6149 5956 2360 73 3 0 chr11 6317121 6317422 -144466131 + AluSg SINE Alu 1 302 -8 212 296 144 8 chr11 6319065 6319197 -144464356 - L2 LINE L2 -1003 2311 2162 206 290 194 11 chr11 6322247 6322340 -144461213 + MIR SINE MIR 20 129 -79 38 61 0 0 chr11 6323334 6323400 -144460153 + GC_rich Low_complexity Low_complexity 1 66 0 221 393 76 7 chr11 6324004 6324149 -144459404 - L2 LINE L2 -12 3260 3106 294 357 104 0 chr11 6324205 6324387 -144459166 - MIR SINE MIR -10 252 52 209 373 59 0 chr11 6324782 6324884 -144458669 - L2 LINE L2 -709 2605 2498 185 332 82 29 chr11 6324887 6325095 -144458458 - L2 LINE L2 -775 2539 2321 202 370 28 19 chr11 6329764 6329872 -144453681 - MIR SINE MIR -140 122 14 289 273 45 36 chr11 6330903 6331013 -144452540 + MIR SINE MIR 73 183 -79 286 343 82 40 chr11 6331466 6331944 -144451609 + L2 LINE L2 479 976 -2338 1432 233 110 21 chr11 6339071 6339605 -144443948 + Charlie1 DNA MER1_type 15 2761 0 487 261 0 49 chr11 6340271 6340413 -144443140 + MIR3 SINE MIR 9 143 -65 2578 179 31 17 chr11 6345687 6346207 -144437346 + MER82 DNA MER2_type 98 624 -29 239 267 0 0 chr11 6346465 6346525 -144437028 + L2 LINE L2 3254 3313 0 323 318 189 43 chr11 6347404 6347420 -144436133 + L2 LINE L2 1992 2004 -1310 1847 158 13 0 chr11 6347420 6347723 -144435830 - AluJo SINE Alu -5 307 1 792 167 8 0 chr11 6347723 6347849 -144435704 - FLAM_A SINE Alu -3 130 4 323 318 189 43 chr11 6347849 6348388 -144435165 + L2 LINE L2 2003 2629 -685 1194 174 38 9 chr11 6348423 6348636 -144434917 - MER20 DNA MER1_type 0 219 1 540 362 111 15 chr11 6348717 6349123 -144434430 + L2 LINE L2 2827 3271 -1 301 258 133 23 chr11 6349469 6349597 -144433956 + L2 LINE L2 2617 2758 -556 262 296 142 17 chr11 6349817 6349993 -144433560 + L2 LINE L2 3075 3272 0 1780 78 22 0 chr11 6350110 6350340 -144433213 + AluY SINE Alu 64 298 -13 240 111 0 0 chr11 6352726 6352762 -144430791 + (CAG)n Simple_repeat Simple_repeat 1 36 0 188 217 50 17 chr11 6353318 6353378 -144430175 + L2 LINE L2 1618 1679 -1635 513 291 98 81 chr11 6353461 6354292 -144429261 - L2 LINE L2 -5 3267 2407 276 309 155 46 chr11 6354519 6355405 -144428148 + L2 LINE L2 1799 2780 -534 256 318 114 15 chr11 6355784 6355916 -144427637 + L2 LINE L2 3125 3269 -3 180 306 56 0 chr11 6356233 6356305 -144427248 + MIR SINE MIR 113 188 -74 281 305 13 7 chr11 6357224 6357378 -144426175 + (CA)n Simple_repeat Simple_repeat 2 156 0 450 289 46 16 chr11 6358760 6358943 -144424610 - MIR SINE MIR -13 249 64 537 308 58 25 chr11 6359315 6359745 -144423808 - L2 LINE L2 -999 2315 1823 743 226 179 0 chr11 6359847 6360059 -144423494 + MIR SINE MIR 2 251 -11 630 275 72 13 chr11 6360074 6360310 -144423243 + MIR SINE MIR 7 256 -6 209 135 0 27 chr11 6360355 6360392 -144423161 - MIR SINE MIR -64 144 109 388 300 58 0 chr11 6360779 6360899 -144422654 - L2 LINE L2 -6 3307 3181 220 288 50 0 chr11 6361187 6361267 -144422286 - MIR SINE MIR -77 185 102 212 83 0 28 chr11 6361322 6361358 -144422195 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 850 324 96 57 chr11 6362440 6364008 -144419545 - L2 LINE L2 -255 3017 1376 629 313 139 17 chr11 6364004 6364727 -144418826 + L2 LINE L2 2459 3272 0 * 212 98 0 24 chr11 6366718 6366759 -144416794 + (CGGG)n Simple_repeat Simple_repeat 3 42 0 1435 159 37 26 chr11 6367048 6367436 -144416117 - L1M2 LINE L1 -743 5548 5160 1094 220 0 8 chr11 6367433 6367669 -144415884 - L1M2 LINE L1 -2267 3879 3646 * 4977 61 2 0 chr11 6367740 6368359 -144415194 - L1PA6 LINE L1 0 6154 5535 23 54 0 0 chr11 6368508 6368545 -144415008 + AT_rich Low_complexity Low_complexity 1 37 0 530 204 32 83 chr11 6368884 6369041 -144414512 - L1ME3A LINE L1 -3 6167 6019 833 215 158 13 chr11 6369228 6369456 -144414097 - MIR SINE MIR 0 262 2 276 247 0 0 chr11 6369621 6369694 -144413859 + L2 LINE L2 2219 2291 -1023 309 326 8 36 chr11 6370375 6370644 -144412909 + GA-rich Low_complexity Low_complexity 1 261 0 * 326 300 18 41 chr11 6370641 6370811 -144412742 + G-rich Low_complexity Low_complexity 3 168 0 3516 70 2 4 chr11 6370916 6371389 -144412164 - L1P LINE L1 -987 5159 4688 820 319 80 30 chr11 6371399 6371639 -144411914 - LTR16C LTR ERVL 0 491 219 2083 162 75 15 chr11 6371639 6372041 -144411512 - MSTB LTR MaLR 0 426 1 820 319 80 30 chr11 6372041 6372226 -144411327 - LTR16C LTR ERVL -272 219 45 6742 64 26 0 chr11 6372889 6374444 -144409109 + L1PA7 LINE L1 4562 6148 -6 1048 236 15 30 chr11 6374451 6374703 -144408850 + L1ME3A LINE L1 5574 5823 -347 1679 124 16 8 chr11 6374703 6374952 -144408601 + AluSg SINE Alu 1 251 -59 1048 236 15 30 chr11 6374952 6374970 -144408583 + L1ME3A LINE L1 5823 5840 -330 583 51 0 0 chr11 6374966 6375044 -144408509 + L1P LINE L1 4735 4812 -1334 * 252 137 78 0 chr11 6375049 6375100 -144408453 + AluSg SINE Alu 248 302 0 997 254 46 38 chr11 6375101 6375448 -144408105 + L1ME3A LINE L1 5817 6166 -4 2344 186 60 4 chr11 6375526 6375993 -144407560 + MLT1D LTR MaLR 13 505 0 187 262 0 0 chr11 6376026 6376068 -144407485 + L2 LINE L2 3230 3271 -1 225 0 0 0 chr11 6377835 6377860 -144405693 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 906 95 44 0 chr11 6377885 6378022 -144405531 - L1MA3 LINE L1 -18 6287 6145 489 273 128 43 chr11 6378156 6378548 -144405005 + L1ME4a LINE L1 5672 6096 -25 1052 181 46 3 chr11 6378686 6378889 -144404664 + MER20 DNA MER1_type 2 214 -5 914 201 11 11 chr11 6379654 6379833 -144403720 + MER66B LTR ERV1 1 179 -307 335 212 7 117 chr11 6379831 6379968 -144403585 + MER66A LTR ERV1 286 407 -71 * 9084 247 47 27 chr11 6380006 6383215 -144400338 + MER66-int LTR ERV1 1210 4225 -3531 1124 81 0 0 chr11 6383215 6383364 -144400189 - THE1B-int LTR MaLR -1431 149 1 2203 140 19 25 chr11 6383365 6383730 -144399823 - THE1B LTR MaLR -1 363 1 2363 93 0 3 chr11 6383781 6384082 -144399471 - AluY SINE Alu -11 300 1 21 0 0 0 chr11 6385314 6385335 -144398218 + AT_rich Low_complexity Low_complexity 1 21 0 858 275 16 0 chr11 6387290 6387478 -144396075 - MLT1E LTR MaLR -4 589 399 566 268 30 45 chr11 6387478 6387676 -144395877 + MLT1A1 LTR MaLR 2 196 -169 2291 226 83 10 chr11 6388284 6388877 -144394676 - MER92B LTR ERV1 0 636 1 315 318 81 38 chr11 6389750 6390011 -144393542 + L2 LINE L2 3029 3300 -13 2086 101 35 0 chr11 6390014 6390300 -144393253 + AluSq SINE Alu 1 296 -17 1083 266 51 4 chr11 6391270 6391647 -144391906 - L1ME3A LINE L1 -208 5962 5570 5077 113 10 0 chr11 6391686 6392370 -144391183 - LTR8 LTR ERV1 0 691 1 244 178 56 22 chr11 6392648 6392738 -144390815 + (TTATA)n Simple_repeat Simple_repeat 2 94 0 336 256 41 72 chr11 6392933 6393128 -144390425 - HAL1 LINE L1 -1166 1341 1153 2414 100 0 0 chr11 6393366 6393677 -144389876 - AluSx SINE Alu -1 311 1 214 227 120 0 chr11 6393793 6393868 -144389685 + MER5B DNA MER1_type 90 173 -5 2223 130 0 3 chr11 6394914 6395221 -144388332 + AluSq SINE Alu 1 306 -7 2144 114 0 3 chr11 6396333 6396630 -144386923 - AluSx SINE Alu -15 297 2 193 321 0 0 chr11 6397087 6397143 -144386410 - MIR SINE MIR -3 259 204 1912 212 62 58 chr11 6397234 6397753 -144385800 + MLT1E3 LTR MaLR 102 622 -2 1383 258 10 7 chr11 6397755 6398239 -144385314 + MLT1E3-int LTR MaLR 1 602 -769 389 313 60 6 chr11 6398437 6398619 -144384934 + MLT1E3-int LTR MaLR 696 887 -484 981 304 113 30 chr11 6399182 6400024 -144383529 + L2 LINE L2 2355 3308 -5 837 276 225 13 chr11 6402535 6403010 -144380543 + L2 LINE L2 2199 2774 -540 2351 86 3 0 chr11 6403030 6403320 -144380233 - AluY SINE Alu -20 291 1 331 368 0 0 chr11 6406646 6406782 -144376771 + CT-rich Low_complexity Low_complexity 1 136 0 802 199 42 0 chr11 6406936 6407102 -144376451 + MIR SINE MIR 88 260 -2 474 204 52 64 chr11 6407142 6407314 -144376239 - MLT1D LTR MaLR -275 230 61 951 303 132 29 chr11 6409818 6410818 -144372735 + L2 LINE L2 1944 3038 -234 1844 174 27 0 chr11 6411071 6411369 -144372184 - AluJb SINE Alu -6 306 1 390 179 74 0 chr11 6411381 6411476 -144372077 - MIR SINE MIR 0 262 161 301 239 43 22 chr11 6411475 6411567 -144371986 + MIR SINE MIR 91 184 -78 * 197 65 32 0 chr11 6411567 6411598 -144371955 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 6415119 6415140 -144368413 + (TCC)n Simple_repeat Simple_repeat 2 22 0 732 159 18 0 chr11 6416258 6416371 -144367182 + FLAM_C SINE Alu 9 123 -20 3165 227 74 43 chr11 6416482 6416549 -144367004 - L1MEc LINE L1 -2683 3463 3400 1426 155 79 94 chr11 6416549 6416857 -144366696 + THE1C LTR MaLR 1 303 -72 2273 107 0 0 chr11 6416857 6417146 -144366407 - AluSq SINE Alu -24 289 1 1426 155 79 94 chr11 6417146 6417218 -144366335 + THE1C LTR MaLR 303 375 0 3165 227 74 43 chr11 6417218 6417301 -144366252 - L1MEc LINE L1 -2746 3400 3321 720 147 16 39 chr11 6417301 6417430 -144366123 - FLAM_A SINE Alu -7 126 1 2280 92 0 3 chr11 6417435 6417727 -144365826 - AluSc SINE Alu -18 291 1 3165 227 74 43 chr11 6417727 6418788 -144364765 - L1MEc LINE L1 -2828 3318 2234 454 286 95 29 chr11 6419067 6419308 -144364245 + MIR SINE MIR 6 262 0 292 338 186 29 chr11 6419558 6419869 -144363684 - L2 LINE L2 -9 3263 2904 415 303 154 8 chr11 6419972 6420328 -144363225 - L2 LINE L2 -752 2562 2155 603 269 59 65 chr11 6421971 6422510 -144361043 - L2 LINE L2 -1094 2220 1685 233 327 125 37 chr11 6422537 6422864 -144360689 - L2 LINE L2 -1 3271 2916 445 345 120 36 chr11 6423120 6423638 -144359915 - L2 LINE L2 -715 2599 2009 2225 99 14 3 chr11 6423638 6423932 -144359621 + AluSg SINE Alu 1 297 -13 445 345 120 36 chr11 6423932 6424097 -144359456 - L2 LINE L2 -1305 2009 1859 306 297 123 13 chr11 6424171 6424326 -144359227 - MLT1K LTR MaLR -19 569 398 398 196 39 10 chr11 6424369 6424471 -144359082 - L1MD2 LINE L1 0 6359 6255 237 65 0 0 chr11 6424480 6424511 -144359042 + (TTA)n Simple_repeat Simple_repeat 2 32 0 849 211 0 6 chr11 6424514 6424670 -144358883 - AluSc SINE Alu -30 279 125 1436 173 7 83 chr11 6424677 6424977 -144358576 - AluJb SINE Alu -35 277 1 754 168 0 23 chr11 6424986 6425117 -144358436 - AluJo SINE Alu -178 134 7 1969 169 92 10 chr11 6425124 6425515 -144358038 - L1MD3 LINE L1 -157 7838 7416 403 171 89 24 chr11 6425516 6425600 -144357953 - MLT1F1 LTR MaLR -442 125 45 196 316 0 26 chr11 6425964 6426040 -144357513 + L2 LINE L2 2997 3070 -243 24 0 0 0 chr11 6427548 6427572 -144355981 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr11 6428364 6428395 -144355158 + AT_rich Low_complexity Low_complexity 1 31 0 3709 155 23 84 chr11 6428612 6429439 -144354114 - L1MB8 LINE L1 -5 6355 5582 2184 132 3 7 chr11 6429439 6429749 -144353804 - AluSx SINE Alu -2 310 2 3709 155 23 84 chr11 6429749 6429794 -144353759 - L1MB8 LINE L1 -778 5582 5536 750 175 134 31 chr11 6429776 6429999 -144353554 - L1MCb LINE L1 -4914 1650 1405 * 716 186 20 17 chr11 6430001 6430285 -144353268 + CT-rich Low_complexity Low_complexity 1 284 0 3886 174 18 45 chr11 6430286 6431425 -144352128 - L1MCb LINE L1 -4849 1196 335 2258 176 76 44 chr11 6431452 6431534 -144352019 - L1MB8 LINE L1 -780 5548 5470 2147 134 0 7 chr11 6431534 6431840 -144351713 - AluSx SINE Alu -8 304 1 2258 176 76 44 chr11 6431840 6432348 -144351205 - L1MB8 LINE L1 -858 5470 4939 500 260 40 121 chr11 6432453 6432717 -144350836 + MLT1E-int LTR MaLR 1074 1309 -62 2042 138 65 6 chr11 6432717 6433071 -144350482 - THE1C LTR MaLR 0 375 1 500 260 40 121 chr11 6433071 6433129 -144350424 + MLT1E-int LTR MaLR 1309 1370 -1 2020 247 50 60 chr11 6433130 6433537 -144350016 + MLT1E LTR MaLR 1 402 -191 1163 219 75 64 chr11 6433537 6433898 -144349655 - MLT1A1 LTR MaLR 0 365 1 2020 247 50 60 chr11 6433898 6434089 -144349464 + MLT1E LTR MaLR 402 593 0 21086 30 3 0 chr11 6434636 6437894 -144345659 - L1PA4 LINE L1 -1 6154 2890 2287 120 0 0 chr11 6438169 6438478 -144345075 - AluSx SINE Alu -3 309 1 748 218 92 86 chr11 6439434 6439760 -144343793 + MER63B DNA MER1_type 6 333 -103 236 57 0 0 chr11 6439762 6439797 -144343756 - L1MB5 LINE L1 -8 6166 6132 340 194 0 0 chr11 6439831 6439898 -144343655 + L1M4 LINE L1 5007 5073 -1073 6293 218 37 35 chr11 6439913 6440641 -144342912 - L1MB8 LINE L1 -2977 3351 2626 2267 167 44 12 chr11 6440641 6441054 -144342499 + MSTB LTR MaLR 1 426 0 6293 218 37 35 chr11 6441054 6442394 -144341159 - L1MB8 LINE L1 -3702 2626 1308 1700 183 3 7 chr11 6442394 6442689 -144340864 - AluJo SINE Alu -14 298 5 6293 218 37 35 chr11 6442689 6443998 -144339555 - L1MB8 LINE L1 -5020 1308 2 306 306 48 7 chr11 6444004 6444151 -144339402 - L1MEc LINE L1 -4734 1662 1510 902 217 135 70 chr11 6444582 6444923 -144338630 - MLT1A1 LTR MaLR 0 365 3 22 0 0 0 chr11 6445529 6445551 -144338002 + AT_rich Low_complexity Low_complexity 1 22 0 3051 215 37 37 chr11 6446338 6447156 -144336397 - L1M4 LINE L1 -1712 4434 3617 2214 122 26 0 chr11 6447756 6447878 -144335675 + AluSx SINE Alu 1 118 -194 282 29 0 0 chr11 6447878 6447913 -144335640 + (CA)n Simple_repeat Simple_repeat 2 36 0 2214 122 26 0 chr11 6447913 6448094 -144335459 + AluSx SINE Alu 118 312 0 213 39 0 0 chr11 6448983 6449009 -144334544 + (T)n Simple_repeat Simple_repeat 1 26 0 186 300 40 0 chr11 6449621 6449671 -144333882 - L2 LINE L2 -98 3174 3123 498 355 80 60 chr11 6449756 6450646 -144332907 + L2 LINE L2 2066 2973 -341 261 314 89 8 chr11 6451057 6451233 -144332320 + L2 LINE L2 2146 2375 -939 207 114 0 0 chr11 6451523 6451558 -144331995 + (TG)n Simple_repeat Simple_repeat 2 36 0 1573 101 0 0 chr11 6451727 6451926 -144331627 + AluSq SINE Alu 1 199 -114 221 345 97 0 chr11 6452190 6452303 -144331250 - L2 LINE L2 0 3272 3149 4551 161 43 40 chr11 6452367 6452477 -144331076 + L1MA9 LINE L1 4355 4463 -1849 335 174 47 23 chr11 6452477 6452563 -144330990 + L1PA12 LINE L1 6081 6168 0 4551 161 43 40 chr11 6452563 6452994 -144330559 + L1MA9 LINE L1 4463 4891 -1421 1704 175 7 14 chr11 6452994 6453291 -144330262 - AluJb SINE Alu -13 299 5 4551 161 43 40 chr11 6453291 6454486 -144329067 + L1MA9 LINE L1 4891 6079 -233 323 353 131 31 chr11 6454889 6455363 -144328190 - L2 LINE L2 -6 3266 2743 681 264 77 4 chr11 6455378 6455613 -144327940 - MER112 DNA MER1_type -7 253 2 2625 18 0 0 chr11 6455778 6456063 -144327490 - L1PA2 LINE L1 0 6155 5871 187 208 113 0 chr11 6456649 6456702 -144326851 - L2 LINE L2 -672 2642 2584 2411 79 0 0 chr11 6457053 6457345 -144326208 - AluY SINE Alu -18 293 2 27 29 0 0 chr11 6458954 6458988 -144324565 + AT_rich Low_complexity Low_complexity 1 34 0 335 272 183 27 chr11 6460802 6461026 -144322527 - MER97c DNA MER1_type? -65 1025 767 896 111 11 99 chr11 6461081 6461262 -144322291 + MLT1C LTR MaLR 1 165 -302 209 200 0 0 chr11 6461270 6461310 -144322243 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2466 70 3 0 chr11 6461310 6461611 -144321942 + AluSx SINE Alu 1 302 -10 1034 242 25 39 chr11 6461660 6461945 -144321608 + MLT1C LTR MaLR 187 467 0 2395 68 0 10 chr11 6462275 6462568 -144320985 - AluSq SINE Alu -23 290 1 551 195 18 26 chr11 6463609 6463722 -144319831 - MER97a DNA MER1_type? -390 504 393 990 95 0 0 chr11 6463736 6463862 -144319691 + LTR8 LTR ERV1 566 691 0 34778 103 86 73 chr11 6463862 6465088 -144318465 + HUERS-P1 LTR ERV1 1 1210 -5053 405 102 0 0 chr11 6465088 6465147 -144318406 + (TG)n Simple_repeat Simple_repeat 2 60 0 34778 103 86 73 chr11 6465147 6466884 -144316669 + HUERS-P1 LTR ERV1 1210 2924 -3339 2342 100 0 0 chr11 6466884 6467184 -144316369 + AluY SINE Alu 1 300 -11 34778 103 86 73 chr11 6467184 6467656 -144315897 + HUERS-P1 LTR ERV1 2924 3389 -2874 273 29 0 0 chr11 6467656 6467690 -144315863 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2902 16 0 0 chr11 6467690 6467997 -144315556 - SVA Other Other -19 1367 1061 34778 103 86 73 chr11 6467997 6470147 -144313406 + HUERS-P1 LTR ERV1 3389 5808 -455 1101 15 8 8 chr11 6470147 6470281 -144313272 + AluY SINE Alu 174 307 -4 34778 103 86 73 chr11 6470281 6470743 -144312810 + HUERS-P1 LTR ERV1 5808 6263 0 4245 96 5 17 chr11 6470743 6471336 -144312217 + LTR8 LTR ERV1 1 586 -105 258 105 0 0 chr11 6471337 6471375 -144312178 + (A)n Simple_repeat Simple_repeat 1 38 0 1365 211 33 15 chr11 6471397 6471734 -144311819 - MER97c DNA MER1_type? -747 343 1 1993 157 0 0 chr11 6472914 6473208 -144310345 - AluJo SINE Alu -18 294 1 540 202 118 45 chr11 6473632 6473810 -144309743 - Charlie4 DNA MER1_type -1 1960 1770 676 188 38 0 chr11 6473829 6473962 -144309591 - Charlie4 DNA MER1_type -1807 154 17 2346 103 3 6 chr11 6474132 6474444 -144309109 - AluSq SINE Alu -2 311 1 540 332 78 27 chr11 6474634 6475009 -144308544 - L2 LINE L2 -192 3080 2699 1165 174 0 54 chr11 6475093 6475317 -144308236 + AluJo SINE Alu 1 212 -100 189 0 0 0 chr11 6475329 6475350 -144308203 + (A)n Simple_repeat Simple_repeat 1 21 0 1770 118 0 0 chr11 6475350 6475596 -144307957 + Tigger3(Golem) DNA MER2_type 2783 3028 -1 319 273 55 27 chr11 6475597 6475707 -144307846 - L2 LINE L2 -617 2697 2585 429 259 19 14 chr11 6475756 6475916 -144307637 - LTR33 LTR ERVL -8 513 319 670 250 133 0 chr11 6475970 6476158 -144307395 - LTR33 LTR ERVL -308 213 1 1974 95 12 0 chr11 6476178 6476430 -144307123 + AluSg SINE Alu 1 255 -55 200 204 0 23 chr11 6476436 6476480 -144307073 - L2 LINE L2 -80 3233 3191 2296 269 60 95 chr11 6476488 6477367 -144306186 + Charlie2b DNA MER1_type 7 826 -1956 2152 125 0 13 chr11 6477367 6477679 -144305874 - AluSx SINE Alu -4 308 1 2296 269 60 95 chr11 6477679 6478109 -144305444 + Charlie2b DNA MER1_type 826 1270 -1512 548 229 41 46 chr11 6478103 6478321 -144305232 + Charlie2b DNA MER1_type 2077 2293 -489 * 2805 245 65 26 chr11 6478386 6479287 -144304266 + L1ME3A LINE L1 5238 6170 0 2059 165 75 71 chr11 6479357 6479848 -144303705 + MLT1D LTR MaLR 13 505 0 230 322 0 0 chr11 6479862 6479921 -144303632 + L2 LINE L2 3211 3269 -3 186 322 122 0 chr11 6481316 6481431 -144302122 - L2 LINE L2 -5 3267 3139 921 147 96 189 chr11 6481438 6481771 -144301782 - AluSq SINE Alu 0 303 2 1474 77 6 0 chr11 6481918 6482099 -144301454 - AluSg/x SINE Alu -21 289 108 2383 89 0 0 chr11 6482280 6482573 -144300980 + AluSx SINE Alu 1 293 -19 379 216 166 0 chr11 6482674 6482813 -144300740 + HAL1b LINE L1 1186 1347 -1 966 214 68 19 chr11 6482893 6483099 -144300454 + MER20 DNA MER1_type 1 216 -3 1003 305 89 10 chr11 6484055 6484471 -144299082 - LTR16A LTR ERVL -1 449 1 2219 103 20 3 chr11 6484864 6485165 -144298388 + AluSx SINE Alu 1 306 -6 402 262 179 24 chr11 6485347 6485515 -144298038 - MIR SINE MIR -32 230 37 413 109 29 196 chr11 6485602 6485682 -144297871 - L1MA7 LINE L1 -260 6031 5982 2079 130 7 0 chr11 6485682 6485990 -144297563 - AluSx SINE Alu -2 310 1 413 109 29 196 chr11 6485990 6486047 -144297506 - L1MA7 LINE L1 -309 5982 5917 2418 71 0 10 chr11 6486447 6486742 -144296811 + AluSg SINE Alu 1 292 -18 2367 128 9 70 chr11 6487178 6487235 -144296318 - L1MA5 LINE L1 -7 6293 6234 2193 99 26 118 chr11 6487235 6487651 -144295902 - L1PA12 LINE L1 -7 6161 5784 2367 128 9 70 chr11 6487651 6487996 -144295557 - L1MA5 LINE L1 -66 6234 5918 2180 121 0 10 chr11 6487996 6488303 -144295250 - AluSx SINE Alu -8 304 1 2367 128 9 70 chr11 6488303 6488344 -144295209 - L1MA5 LINE L1 -382 5918 5876 691 93 39 62 chr11 6488418 6488547 -144295006 + LTR13 LTR ERVK 1 126 -881 * 7729 58 7 3 chr11 6488529 6489473 -144294080 + LTR13 LTR ERVK 60 1007 0 2125 126 3 0 chr11 6490168 6490470 -144293083 - AluSx SINE Alu -9 303 1 1528 126 40 0 chr11 6490975 6491197 -144292356 + AluSx SINE Alu 1 231 -81 22 0 0 0 chr11 6491320 6491342 -144292211 + AT_rich Low_complexity Low_complexity 1 22 0 271 238 105 29 chr11 6498210 6498315 -144285238 - MIR SINE MIR -114 148 36 218 333 14 14 chr11 6498371 6498443 -144285110 + L2 LINE L2 352 423 -2891 383 245 128 0 chr11 6498726 6498828 -144284725 - L2 LINE L2 0 3313 3199 227 356 52 17 chr11 6498832 6498947 -144284606 - L2 LINE L2 -15 3257 3139 800 216 167 39 chr11 6499123 6499405 -144284148 - L2 LINE L2 0 3313 2996 412 147 13 0 chr11 6500398 6500473 -144283080 - LTR33A LTR ERVL -1 522 447 2051 135 6 25 chr11 6500494 6500812 -144282741 + AluSx SINE Alu 1 312 0 380 219 76 90 chr11 6500812 6500916 -144282637 - LTR50 LTR ERVL -184 611 507 1780 178 7 0 chr11 6500916 6501220 -144282333 + AluJo SINE Alu 1 306 -6 380 219 76 90 chr11 6501220 6501295 -144282258 - LTR50 LTR ERVL -288 507 349 2248 120 3 0 chr11 6501298 6501598 -144281955 + AluSp SINE Alu 1 301 -12 650 266 145 0 chr11 6501601 6501842 -144281711 - LTR50 LTR ERVL -517 278 3 699 289 69 24 chr11 6501965 6502211 -144281342 + MIR SINE MIR 4 260 -2 1624 178 45 20 chr11 6502270 6502562 -144280991 + AluJb SINE Alu 1 299 -13 341 291 58 0 chr11 6502620 6502723 -144280830 + L3 LINE CR1 1270 1378 -199 309 298 0 43 chr11 6502922 6503063 -144280490 + GA-rich Low_complexity Low_complexity 1 135 0 2058 128 3 3 chr11 6503480 6503811 -144279742 - AluSx SINE Alu 0 312 1 25 0 0 0 chr11 6505787 6505812 -144277741 + AT_rich Low_complexity Low_complexity 1 25 0 300 224 0 0 chr11 6506582 6506640 -144276913 - L2 LINE L2 -1 3312 3255 28 29 0 0 chr11 6509400 6509435 -144274118 + AT_rich Low_complexity Low_complexity 1 35 0 251 278 0 14 chr11 6509477 6509549 -144274004 + L1ME LINE L1 5703 5773 -397 1848 236 52 29 chr11 6509833 6510355 -144273198 - MER87 LTR ERV1 -7 534 1 5100 222 28 42 chr11 6510851 6511344 -144272209 - L1MA8 LINE L1 -5 6286 5787 225 0 0 0 chr11 6511344 6511369 -144272184 + (TG)n Simple_repeat Simple_repeat 2 26 0 5100 222 28 42 chr11 6511369 6511385 -144272168 - L1MA8 LINE L1 -504 5787 5772 225 0 0 0 chr11 6511385 6511410 -144272143 + (CA)n Simple_repeat Simple_repeat 2 26 0 5100 222 28 42 chr11 6511410 6511873 -144271680 - L1MA8 LINE L1 -519 5772 5304 2423 77 3 0 chr11 6511873 6512173 -144271380 - AluY SINE Alu -10 301 1 5100 222 28 42 chr11 6512173 6513955 -144269598 - L1MA8 LINE L1 -987 5304 3581 305 321 88 38 chr11 6514119 6514381 -144269172 - L1ME LINE L1 -454 5667 5393 23 0 0 0 chr11 6514732 6514755 -144268798 + AT_rich Low_complexity Low_complexity 1 23 0 246 274 19 9 chr11 6514933 6515039 -144268514 - L1ME LINE L1 -1525 4621 4515 738 301 141 19 chr11 6515061 6515600 -144267953 + L2 LINE L2 1330 1934 -1380 243 88 0 0 chr11 6515600 6515634 -144267919 + (TA)n Simple_repeat Simple_repeat 2 35 0 962 17 8 0 chr11 6515637 6515756 -144267797 - L1PA5 LINE L1 0 6154 6035 425 265 85 11 chr11 6516412 6516601 -144266952 - Charlie7 DNA MER1_type -607 2005 1803 2355 190 81 26 chr11 6516606 6517069 -144266484 - L1MD1 LINE L1 -179 6063 5543 890 103 314 0 chr11 6517069 6517244 -144266309 - MER30 DNA MER1_type 0 230 1 2355 190 81 26 chr11 6517244 6517436 -144266117 - L1MD1 LINE L1 -699 5543 5363 195 42 0 0 chr11 6517444 6517468 -144266085 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 252 315 22 16 chr11 6517967 6518151 -144265402 - AluJb SINE Alu -10 292 108 726 211 77 35 chr11 6518446 6518520 -144265033 - L1MB7 LINE L1 -304 5880 5811 1811 180 0 0 chr11 6518520 6518835 -144264718 - AluSx SINE Alu 0 315 1 726 211 77 35 chr11 6518835 6519019 -144264534 - L1MB7 LINE L1 -373 5811 5610 1274 199 15 7 chr11 6519023 6519374 -144264179 - L1MB7 LINE L1 -714 5470 5118 495 294 121 9 chr11 6521411 6521642 -144261911 - MIR SINE MIR -1 261 5 1440 201 33 23 chr11 6521954 6522067 -144261486 + AluJo SINE Alu 2 112 -200 405 0 0 0 chr11 6522067 6522112 -144261441 + (CA)n Simple_repeat Simple_repeat 2 46 0 1440 201 33 23 chr11 6522112 6522297 -144261256 + AluJo SINE Alu 112 303 -9 489 253 39 43 chr11 6523192 6523425 -144260128 - L1M2 LINE L1 -646 5666 5435 1134 124 0 0 chr11 6523452 6523613 -144259940 - AluSq SINE Alu -24 289 129 599 320 84 35 chr11 6523644 6524153 -144259400 - L2 LINE L2 -1076 2238 1705 638 133 0 0 chr11 6524155 6524292 -144259261 - AluSg/x SINE Alu 0 330 194 237 333 135 0 chr11 6524297 6524423 -144259130 - L2 LINE L2 -1814 1500 1358 507 239 23 0 chr11 6525653 6525783 -144257770 - FLAM_C SINE Alu -10 133 1 316 310 54 87 chr11 6525811 6526108 -144257445 - L2 LINE L2 -396 2918 2632 2313 143 105 16 chr11 6526108 6526556 -144256997 + LTR45B LTR ERV1 2 489 0 316 310 54 87 chr11 6526556 6526590 -144256963 - L2 LINE L2 -682 2632 2598 194 340 112 15 chr11 6526638 6526835 -144256718 - L2 LINE L2 -1105 2209 1994 236 113 57 19 chr11 6526992 6527045 -144256508 - MIR3 SINE MIR -7 201 147 432 0 0 0 chr11 6527654 6527702 -144255851 + (TG)n Simple_repeat Simple_repeat 2 49 0 1545 151 0 99 chr11 6527703 6528015 -144255538 - AluJb SINE Alu -27 285 5 270 297 61 24 chr11 6528163 6528328 -144255225 - MIR SINE MIR -73 189 19 189 352 11 11 chr11 6533153 6533241 -144250312 + L2 LINE L2 2228 2315 -999 2373 93 0 0 chr11 6533890 6534191 -144249362 - AluY SINE Alu -10 301 1 23 0 0 0 chr11 6534406 6534429 -144249124 + AT_rich Low_complexity Low_complexity 1 23 0 197 264 69 69 chr11 6534447 6534534 -144249019 - MIR SINE MIR -158 104 18 204 136 0 68 chr11 6534768 6534812 -144248741 + MIR SINE MIR 222 262 0 3216 70 5 0 chr11 6535328 6535768 -144247785 - THE1B-int LTR MaLR -1138 442 1 1039 131 15 50 chr11 6535768 6535966 -144247587 - THE1B LTR MaLR 0 364 174 731 33 0 0 chr11 6535966 6536057 -144247496 - AluYb8 SINE Alu -2 316 226 4933 145 10 6 chr11 6536251 6537178 -144246375 + L1PA12 LINE L1 5166 6098 -70 2194 113 0 0 chr11 6537233 6537516 -144246037 + AluSc SINE Alu 1 283 -26 398 322 27 14 chr11 6537840 6537986 -144245567 + L2 LINE L2 3154 3301 -12 329 316 42 53 chr11 6538011 6538201 -144245352 - MIR SINE MIR -67 195 8 198 0 0 0 chr11 6538677 6538699 -144244854 + (T)n Simple_repeat Simple_repeat 1 22 0 1444 106 55 0 chr11 6539174 6539392 -144244161 - MER30 DNA MER1_type 0 230 1 196 305 103 46 chr11 6539932 6540106 -144243447 - L2 LINE L2 -251 3021 2838 263 91 0 45 chr11 6540408 6540452 -144243101 - THE1B LTR MaLR -322 42 1 1965 75 33 23 chr11 6540462 6540769 -144242784 - THE1B-int LTR MaLR -11 1569 1260 803 170 61 31 chr11 6540778 6540992 -144242561 - THE1C LTR MaLR -191 184 1 2393 75 7 0 chr11 6541052 6541345 -144242208 + AluY SINE Alu 1 295 -16 291 347 155 19 chr11 6541351 6541622 -144241931 - L2 LINE L2 -626 2688 2381 12776 72 7 1 chr11 6541784 6543546 -144240007 + PABL_A-int LTR ERV1 3243 5015 0 4537 68 39 45 chr11 6543546 6543805 -144239748 + PABL_A LTR ERV1 1 260 -400 1942 129 0 18 chr11 6543805 6544136 -144239417 - AluY SINE Alu 0 326 1 4537 68 39 45 chr11 6544136 6544538 -144239015 + PABL_A LTR ERV1 260 660 0 312 349 85 25 chr11 6544539 6544774 -144238779 - L2 LINE L2 -468 2846 2598 197 195 0 0 chr11 6545290 6545331 -144238222 + MIR3 SINE MIR 161 201 -7 321 297 45 74 chr11 6545719 6545988 -144237565 + L2 LINE L2 2598 2858 -456 206 333 143 9 chr11 6546099 6546204 -144237349 + MIR SINE MIR 27 145 -63 431 345 110 44 chr11 6546985 6547304 -144236249 + L2 LINE L2 2933 3272 0 6376 79 15 30 chr11 6547820 6548755 -144234798 - THE1B-int LTR MaLR -659 921 1 2107 121 53 31 chr11 6548755 6549111 -144234442 - THE1B LTR MaLR 0 364 1 2331 173 32 12 chr11 6549111 6549607 -144233946 - L1MC3 LINE L1 -575 7210 6705 5384 137 9 6 chr11 6549755 6550683 -144232870 + L1PA12 LINE L1 5166 6098 -70 2304 102 0 0 chr11 6550739 6551033 -144232520 + AluSc SINE Alu 1 294 -15 380 329 27 14 chr11 6551349 6551495 -144232058 + L2 LINE L2 3154 3301 -12 334 316 42 53 chr11 6551520 6551710 -144231843 - MIR SINE MIR -67 195 8 234 0 0 0 chr11 6552181 6552207 -144231346 + (T)n Simple_repeat Simple_repeat 1 26 0 1430 110 55 0 chr11 6552683 6552901 -144230652 - MER30 DNA MER1_type 0 230 1 185 305 103 46 chr11 6553441 6553615 -144229938 - L2 LINE L2 -251 3021 2838 22 0 0 0 chr11 6553664 6553686 -144229867 + AT_rich Low_complexity Low_complexity 1 22 0 348 179 26 0 chr11 6553739 6553856 -144229697 + (TA)n Simple_repeat Simple_repeat 1 120 0 200 175 29 10 chr11 6553885 6553988 -144229565 + (TA)n Simple_repeat Simple_repeat 2 106 0 345 209 146 32 chr11 6553997 6554155 -144229398 - L1ME4a LINE L1 -23 6098 5923 710 253 93 15 chr11 6554345 6554677 -144228876 - Charlie7 DNA MER1_type -452 2160 1803 2546 190 81 26 chr11 6554682 6555145 -144228408 - L1MD1 LINE L1 -179 6063 5543 900 97 314 0 chr11 6555145 6555320 -144228233 - MER30 DNA MER1_type 0 230 1 2546 190 81 26 chr11 6555320 6555512 -144228041 - L1MD1 LINE L1 -699 5543 5363 195 42 0 0 chr11 6555520 6555544 -144228009 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 302 306 79 104 chr11 6555549 6555990 -144227563 - HAL1 LINE L1 -1046 1461 1032 1956 139 0 0 chr11 6556033 6556334 -144227219 - AluSx SINE Alu 0 301 1 1895 166 0 0 chr11 6556571 6556872 -144226681 - AluJb SINE Alu -11 301 1 305 291 92 28 chr11 6556966 6557107 -144226446 - HAL1b LINE L1 -869 479 330 254 282 86 61 chr11 6557213 6557376 -144226177 + L2 LINE L2 2621 2787 -527 31 26 0 0 chr11 6557472 6557510 -144226043 + AT_rich Low_complexity Low_complexity 1 38 0 190 241 35 0 chr11 6557927 6557985 -144225568 + MIR SINE MIR 99 158 -104 2539 40 3 7 chr11 6559766 6560069 -144223484 - AluY SINE Alu -9 302 1 633 327 19 34 chr11 6560612 6560933 -144222620 - L1ME4a LINE L1 -2077 5731 5416 1599 177 14 31 chr11 6561308 6561602 -144221951 - AluJo SINE Alu -15 297 9 1627 154 52 33 chr11 6561627 6561933 -144221620 - AluSx SINE Alu 0 312 1 186 344 135 50 chr11 6562334 6562889 -144220664 - L2 LINE L2 -348 2966 2365 225 293 187 0 chr11 6563064 6563187 -144220366 - L2 LINE L2 0 3313 3168 632 281 24 0 chr11 6563435 6563602 -144219951 + MIR SINE MIR 92 262 0 449 293 117 59 chr11 6563716 6563900 -144219653 + L2 LINE L2 2949 3121 -192 189 0 0 0 chr11 6563900 6563921 -144219632 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 2110 99 7 0 chr11 6563921 6564205 -144219348 - AluSp SINE Alu -27 286 1 449 293 117 59 chr11 6564205 6564360 -144219193 + L2 LINE L2 3120 3309 -4 184 371 0 0 chr11 6564460 6564522 -144219031 - MIR SINE MIR -1 261 200 7235 36 1 21 chr11 6566591 6568033 -144215520 + L1PA5 LINE L1 4722 6145 -9 22 0 0 0 chr11 6568316 6568338 -144215215 + AT_rich Low_complexity Low_complexity 1 22 0 472 292 15 22 chr11 6568411 6568548 -144215005 - L2 LINE L2 -9 3304 3169 2165 210 12 37 chr11 6569328 6569843 -144213710 + MLT1D LTR MaLR 4 505 0 465 294 195 43 chr11 6569932 6570237 -144213316 + L2 LINE L2 1390 1647 -1667 782 137 37 12 chr11 6570237 6570398 -144213155 - L1MB8 LINE L1 0 6178 6014 465 294 195 43 chr11 6570398 6570693 -144212860 + L2 LINE L2 1647 2081 -1233 518 148 31 39 chr11 6570784 6570912 -144212641 - L1MA10 LINE L1 -1 6333 6207 349 244 24 85 chr11 6570935 6571099 -144212454 + L2 LINE L2 2255 2408 -906 6824 177 14 13 chr11 6571530 6572896 -144210657 - MSTB-int LTR MaLR -219 1361 1 794 164 22 0 chr11 6572896 6573030 -144210523 - MSTB LTR MaLR -2 424 288 23 54 0 0 chr11 6575756 6575793 -144207760 + AT_rich Low_complexity Low_complexity 1 37 0 1809 166 10 0 chr11 6577708 6577998 -144205555 - AluSx SINE Alu -17 295 3 910 132 0 22 chr11 6578107 6578243 -144205310 + FLAM_C SINE Alu 1 133 0 356 371 65 12 chr11 6578825 6579146 -144204407 + HAL1b LINE L1 95 432 -916 2306 87 3 0 chr11 6579960 6580260 -144203293 + AluY SINE Alu 1 301 -10 225 295 117 38 chr11 6580598 6580940 -144202613 + L1MB1 LINE L1 3590 3958 -2188 2100 128 0 19 chr11 6581296 6581608 -144201945 + AluSx SINE Alu 2 307 -5 25 65 0 0 chr11 6581890 6581936 -144201617 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr11 6581993 6582022 -144201531 + AT_rich Low_complexity Low_complexity 1 29 0 206 227 0 0 chr11 6582328 6582372 -144201181 + A-rich Low_complexity Low_complexity 4 47 0 34 65 0 0 chr11 6582383 6582445 -144201108 + AT_rich Low_complexity Low_complexity 1 62 0 4524 175 27 31 chr11 6582515 6582765 -144200788 + L1MB1 LINE L1 4778 5028 -1140 1805 149 4 0 chr11 6582765 6583040 -144200513 + AluSp SINE Alu 30 305 -8 4524 175 27 31 chr11 6583040 6584179 -144199374 + L1MB1 LINE L1 5028 6161 -7 22 0 0 0 chr11 6584587 6584609 -144198944 + AT_rich Low_complexity Low_complexity 1 22 0 195 308 6 141 chr11 6584685 6584841 -144198712 - MIR SINE MIR -79 183 49 492 195 11 0 chr11 6585028 6585115 -144198438 - MER58B DNA MER1_type 0 341 254 180 0 0 0 chr11 6585142 6585162 -144198391 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 773 237 59 23 chr11 6585221 6585440 -144198113 - MER58B DNA MER1_type -114 227 1 181 327 158 0 chr11 6585636 6585737 -144197816 + L2 LINE L2 3197 3313 0 2147 107 4 0 chr11 6585829 6586139 -144197414 + AluSx SINE Alu 1 311 0 252 292 63 69 chr11 6587366 6587539 -144196014 + MIR SINE MIR 11 183 -79 573 320 63 5 chr11 6587644 6587866 -144195687 - L2 LINE L2 -1 3312 3078 253 241 13 25 chr11 6588087 6588166 -144195387 + L1MC/D LINE L1 5692 5769 -2039 386 307 76 43 chr11 6588719 6589299 -144194254 - LTR57-int LTR ERVL -2560 2783 2225 261 330 41 0 chr11 6589312 6589409 -144194144 - LTR57-int LTR ERVL -3276 2067 1967 1741 194 32 55 chr11 6589410 6589844 -144193709 - LTR47B LTR ERVL -19 424 1 460 303 98 57 chr11 6590379 6590746 -144192807 + L2 LINE L2 2877 3258 -55 203 349 46 46 chr11 6590769 6590921 -144192632 - L2 LINE L2 -654 2660 2509 2262 101 0 0 chr11 6590929 6591217 -144192336 + AluSx SINE Alu 13 300 -12 2448 80 0 0 chr11 6591793 6592094 -144191459 + AluY SINE Alu 1 301 -10 183 331 57 38 chr11 6592743 6592900 -144190653 - L2 LINE L2 -999 2315 2156 197 182 0 68 chr11 6593099 6593143 -144190410 - MIR SINE MIR 0 262 222 192 287 58 58 chr11 6593377 6593464 -144190089 + MIR SINE MIR 18 104 -158 23 0 0 0 chr11 6593482 6593505 -144190048 + AT_rich Low_complexity Low_complexity 1 23 0 2375 89 0 3 chr11 6593720 6594022 -144189531 + AluSg SINE Alu 1 301 -9 208 173 40 40 chr11 6594056 6594131 -144189422 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 1575 165 6 84 chr11 6594290 6594624 -144188929 - AluJo SINE Alu -4 308 1 395 300 47 88 chr11 6594664 6594949 -144188604 - L2 LINE L2 -410 2904 2632 2334 145 102 16 chr11 6594949 6595398 -144188155 + LTR45B LTR ERV1 2 489 0 395 300 47 88 chr11 6595398 6595432 -144188121 - L2 LINE L2 -682 2632 2598 208 340 112 15 chr11 6595480 6595677 -144187876 - L2 LINE L2 -1105 2209 1994 231 113 57 19 chr11 6595834 6595887 -144187666 - MIR3 SINE MIR -7 201 147 423 0 0 0 chr11 6596498 6596545 -144187008 + (TG)n Simple_repeat Simple_repeat 2 48 0 1515 157 0 99 chr11 6596546 6596858 -144186695 - AluJb SINE Alu -27 285 5 568 281 51 6 chr11 6597005 6597183 -144186370 - MIR SINE MIR -73 189 4 485 325 102 11 chr11 6597610 6597884 -144185669 + L2 LINE L2 2570 2868 -446 1745 232 30 48 chr11 6597898 6598563 -144184990 - L1M4 LINE L1 -2468 3678 3026 4819 180 49 5 chr11 6598587 6599062 -144184491 - L1MA7 LINE L1 -22 6269 5817 1829 171 44 21 chr11 6599062 6599402 -144184151 - MER7A DNA MER2_type 0 346 1 4819 180 49 5 chr11 6599402 6600529 -144183024 - L1MA7 LINE L1 -474 5817 4590 1186 198 90 0 chr11 6600529 6600797 -144182756 - MSTB1 LTR MaLR -140 292 1 1821 160 57 19 chr11 6600797 6601216 -144182337 - L1MA7 LINE L1 -1707 4439 4005 2422 173 6 35 chr11 6601219 6601700 -144181853 - MER52A LTR ERV1 0 1755 1289 4004 167 118 156 chr11 6601947 6602612 -144180941 - L1 LINE L1 -863 5283 4594 912 207 119 0 chr11 6602612 6602873 -144180680 - MSTB1 LTR MaLR -140 292 1 4004 167 118 156 chr11 6602873 6603296 -144180257 - L1 LINE L1 -1552 4594 4157 8214 165 112 23 chr11 6603296 6604908 -144178645 - MER52A LTR ERV1 0 1755 1 4004 167 118 156 chr11 6604908 6605435 -144178118 - L1 LINE L1 -1989 4157 3478 839 244 32 8 chr11 6605612 6605862 -144177691 - L1M4 LINE L1 -6256 286 31 367 311 73 23 chr11 6606032 6606251 -144177302 + MIR SINE MIR 33 262 0 2626 40 0 3 chr11 6606420 6606723 -144176830 - AluY SINE Alu -9 302 1 1194 151 8 40 chr11 6606989 6607061 -144176492 + L1MA8 LINE L1 6032 6105 -186 1947 172 52 41 chr11 6607061 6607480 -144176073 - MSTB LTR MaLR 0 426 3 1194 151 8 40 chr11 6607480 6607658 -144175895 + L1MA8 LINE L1 6105 6274 -17 2282 101 0 16 chr11 6607682 6607988 -144175565 + AluSg SINE Alu 1 301 -9 552 122 0 11 chr11 6607988 6608078 -144175475 + L1MB3 LINE L1 6055 6143 -40 290 177 32 0 chr11 6608084 6608146 -144175407 + L1 LINE L1 3816 3879 -2267 332 238 148 8 chr11 6608200 6608322 -144175231 + LTR37B LTR ERV1 330 468 0 21 0 0 0 chr11 6608374 6608395 -144175158 + AT_rich Low_complexity Low_complexity 1 21 0 2293 232 35 3 chr11 6608834 6609438 -144174115 + L1ME1 LINE L1 5539 6161 -5 22 35 0 0 chr11 6609571 6609600 -144173953 + AT_rich Low_complexity Low_complexity 1 29 0 370 346 54 19 chr11 6609736 6609941 -144173612 - HAL1 LINE L1 -869 1638 1427 420 249 30 117 chr11 6614962 6615159 -144168394 + MIR SINE MIR 70 249 -13 441 66 0 0 chr11 6615279 6615340 -144168213 + (TG)n Simple_repeat Simple_repeat 1 61 0 231 283 22 36 chr11 6615375 6615513 -144168040 - L1ME LINE L1 -510 5656 5521 224 341 135 0 chr11 6616311 6616437 -144167116 + L2 LINE L2 1358 1500 -1814 639 133 0 0 chr11 6616442 6616583 -144166970 + AluSg/x SINE Alu 194 334 0 723 312 84 37 chr11 6616585 6617095 -144166458 + L2 LINE L2 1705 2238 -1076 1192 107 0 18 chr11 6617126 6617284 -144166269 + AluSq SINE Alu 129 288 -25 224 30 30 0 chr11 6617284 6617317 -144166236 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3742 185 19 28 chr11 6617318 6618200 -144165353 + L1MA9 LINE L1 5439 6312 0 736 259 38 46 chr11 6619383 6619730 -144163823 - L1MD3 LINE L1 0 7995 7652 557 284 24 47 chr11 6620236 6620447 -144163106 + L3 LINE CR1 765 970 -607 279 354 71 0 chr11 6621702 6621829 -144161724 - L2 LINE L2 0 3272 3137 426 331 41 6 chr11 6623801 6623973 -144159580 - MIR SINE MIR -26 236 59 191 284 178 58 chr11 6625220 6625428 -144158125 + L2 LINE L2 2620 2852 -462 469 261 127 13 chr11 6627657 6627814 -144155739 + MIR SINE MIR 73 247 -15 8023 161 24 8 chr11 6628155 6629471 -144154082 - MSTA-int LTR MaLR -221 1430 89 2725 95 92 5 chr11 6629471 6629883 -144153670 + LTR7 LTR ERV1 1 448 -2 8023 161 24 8 chr11 6629883 6629974 -144153579 - MSTA-int LTR MaLR -1562 89 1 1905 161 39 14 chr11 6629974 6630329 -144153224 - MSTA LTR MaLR 0 428 65 1681 132 68 37 chr11 6630341 6630666 -144152887 - LTR10A LTR ERV1 -61 548 214 273 253 126 0 chr11 6630688 6630775 -144152778 - LTR10A LTR ERV1 -511 98 1 432 149 0 0 chr11 6630777 6630844 -144152709 - MSTA LTR MaLR -361 67 1 554 292 116 4 chr11 6631670 6631903 -144151650 - MIR SINE MIR 0 262 4 1442 195 47 30 chr11 6632214 6632327 -144151226 + AluJo SINE Alu 2 112 -200 387 0 0 0 chr11 6632327 6632370 -144151183 + (CA)n Simple_repeat Simple_repeat 2 44 0 1442 195 47 30 chr11 6632370 6632553 -144151000 + AluJo SINE Alu 112 303 -9 11503 223 38 30 chr11 6633911 6635620 -144147933 - L1PA16 LINE L1 0 6223 4528 333 82 0 0 chr11 6635620 6635669 -144147884 + (TG)n Simple_repeat Simple_repeat 2 50 0 11503 223 38 30 chr11 6635669 6637636 -144145917 - L1PA16 LINE L1 -1695 4528 2577 2393 89 0 13 chr11 6637636 6637949 -144145604 - AluSg1 SINE Alu 0 309 1 11503 223 38 30 chr11 6637949 6638058 -144145495 - L1PA16 LINE L1 -3646 2577 2470 909 183 0 0 chr11 6638058 6638227 -144145326 + ALR/Alpha Satellite centromeric 3 171 0 11503 223 38 30 chr11 6638227 6638782 -144144771 - L1PA16 LINE L1 -3753 2470 1921 387 0 0 0 chr11 6638782 6638825 -144144728 + (TA)n Simple_repeat Simple_repeat 1 43 0 2552 42 3 16 chr11 6638825 6639136 -144144417 - AluY SINE Alu -4 307 1 11503 223 38 30 chr11 6639136 6640442 -144143111 - L1PA16 LINE L1 -4301 1922 363 419 299 58 48 chr11 6640562 6640873 -144142680 - L1PA16 LINE L1 -5838 366 53 658 424 44 18 chr11 6641082 6641584 -144141969 - L1M2 LINE L1 -6320 529 15 603 214 13 7 chr11 6641603 6641757 -144141796 - ERVL LTR ERVL -1739 4025 3871 614 178 0 0 chr11 6641774 6641892 -144141661 + L1ME1 LINE L1 5813 5930 -236 886 283 84 27 chr11 6642045 6642786 -144140767 - L1PBb LINE L1 -4965 1883 1008 429 296 58 48 chr11 6642906 6643217 -144140336 - L1PBb LINE L1 -5838 1011 698 658 424 44 18 chr11 6643426 6643928 -144139625 - L1PBb LINE L1 -6320 529 15 603 214 13 7 chr11 6643947 6644101 -144139452 - ERVL LTR ERVL -1739 4025 3871 1006 226 4 4 chr11 6644118 6644357 -144139196 + L1ME1 LINE L1 5813 6051 -115 1985 105 25 11 chr11 6644363 6644648 -144138905 + AluSg SINE Alu 1 289 -21 4655 11 0 0 chr11 6644787 6645311 -144138242 + L1PA3 LINE L1 5628 6151 -4 216 0 0 0 chr11 6645346 6645370 -144138183 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 852 209 31 5 chr11 6645375 6645566 -144137987 + THE1C LTR MaLR 180 375 0 258 388 53 24 chr11 6645576 6645782 -144137771 + L2 LINE L2 2765 2976 -338 6277 26 3 1 chr11 6648827 6649567 -144133986 - L1PA4 LINE L1 -3 6152 5412 1419 324 53 19 chr11 6650001 6650637 -144132916 + L2 LINE L2 2184 2841 -473 193 250 100 33 chr11 6650676 6650736 -144132817 - MER5B DNA MER1_type 0 178 115 354 333 58 39 chr11 6650739 6650946 -144132607 + L1ME LINE L1 139 349 -5856 268 271 88 0 chr11 6651768 6651938 -144131615 + L1M3d LINE L1 1025 1209 -4682 347 231 0 33 chr11 6652151 6652242 -144131311 + L1ME LINE L1 1532 1619 -4777 * 652 246 11 29 chr11 6652220 6652395 -144131158 + L1MEc LINE L1 36 207 -6189 3204 269 61 32 chr11 6652399 6653750 -144129803 + L1MEc LINE L1 353 1751 -4645 2111 121 0 10 chr11 6653750 6654048 -144129505 + AluSx SINE Alu 1 295 -17 3204 269 61 32 chr11 6654048 6654150 -144129403 + L1MEc LINE L1 1751 1849 -4547 248 226 0 0 chr11 6654162 6654266 -144129287 + L1MEc LINE L1 2463 2627 -3588 351 0 0 0 chr11 6654274 6654313 -144129240 + (CA)n Simple_repeat Simple_repeat 2 40 0 6703 59 9 22 chr11 6654315 6655260 -144128293 - L1PA7 LINE L1 -21 6133 5201 5420 101 33 12 chr11 6655260 6656070 -144127483 + L1PA15 LINE L1 5337 6163 -2 521 303 76 32 chr11 6656471 6656656 -144126897 + LTR33 LTR ERVL 18 210 -311 321 237 51 85 chr11 6656712 6656830 -144126723 + LTR33 LTR ERVL 304 417 -104 462 226 8 15 chr11 6657441 6657574 -144125979 - L1MA7 LINE L1 -4 6287 6156 289 191 29 52 chr11 6657610 6657746 -144125807 - Charlie5 DNA MER1_type -126 2486 2354 2178 149 32 5 chr11 6657746 6658122 -144125431 - L1PA16 LINE L1 0 6166 5781 473 103 16 159 chr11 6658128 6658254 -144125299 - MER50 LTR ERV1 -130 604 497 1659 194 51 15 chr11 6660325 6660737 -144122816 - Charlie4a DNA MER1_type -33 475 49 1321 198 15 10 chr11 6661671 6662023 -144121530 + L1MB8 LINE L1 5118 5470 -714 2320 188 42 21 chr11 6662027 6662211 -144121342 + L1MB8 LINE L1 5610 5789 -389 1797 180 0 0 chr11 6662211 6662526 -144121027 + AluSx SINE Alu 1 315 0 2320 188 42 21 chr11 6662526 6662868 -144120685 + L1MB8 LINE L1 5789 6148 -30 415 263 22 118 chr11 6663218 6663446 -144120107 - L1ME LINE L1 -339 5782 5577 274 219 27 41 chr11 6663780 6663853 -144119700 - L2 LINE L2 -8 3305 3234 221 356 0 0 chr11 6663897 6663970 -144119583 + L2 LINE L2 3237 3309 -4 204 209 0 0 chr11 6664545 6664588 -144118965 + (CA)n Simple_repeat Simple_repeat 2 44 0 194 367 75 17 chr11 6664673 6664793 -144118760 + L2 LINE L2 3137 3263 -9 419 251 94 6 chr11 6666848 6667019 -144116534 - L1MC4 LINE L1 0 8042 7857 * 1071 263 67 25 chr11 6667017 6667596 -144115957 + L1ME3A LINE L1 5261 5889 -281 277 273 82 49 chr11 6667580 6668030 -144115523 + L1ME3 LINE L1 4754 5232 -914 * 282 334 77 15 chr11 6668058 6668382 -144115171 + L1ME3 LINE L1 5254 5591 -574 399 295 71 22 chr11 6668536 6668719 -144114834 + L1ME3 LINE L1 5752 5943 -219 563 296 70 50 chr11 6669498 6669915 -144113638 + L1ME LINE L1 5310 5738 -383 1978 158 103 8 chr11 6669915 6670302 -144113251 - MSTB LTR MaLR -2 424 1 563 296 70 50 chr11 6670302 6670326 -144113227 + L1ME LINE L1 5738 5760 -361 3237 142 45 6 chr11 6670637 6671144 -144112409 - MER1A DNA MER1_type 0 527 1 42240 39 3 0 chr11 6671389 6676532 -144107021 + L1P LINE L1 1 5161 -985 192 77 0 0 chr11 6676724 6676750 -144106803 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 254 28 14 chr11 6676759 6676830 -144106723 - L1ME LINE L1 -204 5986 5915 489 283 81 12 chr11 6676962 6677135 -144106418 - MIR SINE MIR -73 189 5 530 286 83 43 chr11 6677135 6677652 -144105901 - L1ME LINE L1 -312 5878 5341 384 320 73 77 chr11 6677850 6678425 -144105128 - L1ME LINE L1 -1016 5199 4627 338 287 81 46 chr11 6678425 6678599 -144104954 + MER5A DNA MER1_type 7 186 -3 664 302 116 67 chr11 6678608 6678761 -144104792 - L1ME LINE L1 -1586 4629 4485 1907 140 32 0 chr11 6678761 6679040 -144104513 - AluSg SINE Alu -22 288 1 664 302 116 67 chr11 6679040 6679630 -144103923 - L1ME LINE L1 -1730 4485 3850 2022 234 123 31 chr11 6679819 6680560 -144102993 - L1MEc LINE L1 -3193 3022 2227 2347 86 0 19 chr11 6680560 6680875 -144102678 - AluY SINE Alu -2 309 1 2022 234 123 31 chr11 6680875 6681099 -144102454 - L1MEc LINE L1 -3988 2227 2025 659 300 106 29 chr11 6681237 6681614 -144101939 - L1MEc LINE L1 -5936 460 55 323 214 0 67 chr11 6681742 6681831 -144101722 - L1ME4a LINE L1 -71 6050 5968 874 171 0 0 chr11 6682027 6682173 -144101380 + FRAM SINE Alu 30 175 -1 271 205 39 26 chr11 6682505 6682583 -144100970 - L1ME4a LINE L1 -495 5626 5548 512 290 54 27 chr11 6682651 6682837 -144100716 + MIR SINE MIR 72 262 0 311 222 20 46 chr11 6682876 6683060 -144100493 - L1ME4a LINE L1 -897 5405 5256 737 173 167 0 chr11 6683061 6683223 -144100330 - L1P LINE L1 -1947 4199 4011 4258 149 15 8 chr11 6683224 6683948 -144099605 + L1PA16 LINE L1 5438 6166 0 28 29 0 0 chr11 6684570 6684605 -144098948 + AT_rich Low_complexity Low_complexity 1 35 0 457 393 85 22 chr11 6686256 6686704 -144096849 - L3 LINE CR1 -5 1572 1097 693 237 78 41 chr11 6687519 6687738 -144095815 + L2 LINE L2 600 826 -2488 374 246 53 18 chr11 6687738 6687852 -144095701 + MLT1G LTR MaLR 473 590 0 330 75 94 19 chr11 6688023 6688076 -144095477 - LTR67 LTR ERVL -1 556 500 245 279 99 70 chr11 6688109 6688281 -144095272 - LTR67 LTR ERVL -134 423 247 1856 178 43 0 chr11 6688300 6688648 -144094905 + L1MC3 LINE L1 7227 7589 -196 1197 139 21 72 chr11 6688674 6688911 -144094642 + AluJb SINE Alu 84 308 -4 417 30 45 15 chr11 6688924 6688991 -144094562 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 576 178 36 115 chr11 6688992 6689245 -144094308 + L1MC3 LINE L1 7553 7785 0 490 306 60 50 chr11 6689421 6689819 -144093734 + L2 LINE L2 1957 2358 -956 5194 168 93 59 chr11 6692952 6693525 -144090028 - L1MC3 LINE L1 -35 7750 7198 250 163 0 0 chr11 6693525 6693568 -144089985 - MLT1F1 LTR MaLR -478 89 47 5194 168 93 59 chr11 6693568 6694227 -144089326 - L1MC3 LINE L1 -587 7198 6432 387 292 158 15 chr11 6694390 6694592 -144088961 - MIR SINE MIR -13 249 19 850 234 73 5 chr11 6694610 6694815 -144088738 - MER20 DNA MER1_type 0 219 1 250 307 49 86 chr11 6696439 6696602 -144086951 - L2 LINE L2 -473 2841 2685 999 193 104 0 chr11 6696614 6696816 -144086737 + MER58A DNA MER1_type 1 223 -1 2471 42 0 26 chr11 6697204 6697511 -144086042 + AluY SINE Alu 1 299 -12 474 188 30 0 chr11 6697516 6697617 -144085936 + L1MC5 LINE L1 7331 7434 -527 1048 247 113 43 chr11 6698083 6698553 -144085000 - MLT1D LTR MaLR 0 505 3 1575 231 130 47 chr11 6698680 6699255 -144084298 + L1MB5 LINE L1 347 969 -5573 5479 203 105 22 chr11 6699258 6702611 -144080942 + L1MB5 LINE L1 2965 6660 -12 263 354 89 53 chr11 6702624 6703017 -144080536 - L2 LINE L2 -2288 1026 620 185 217 87 0 chr11 6703087 6703133 -144080420 + L2 LINE L2 3223 3272 0 1561 166 10 41 chr11 6703655 6703950 -144079603 + AluJo SINE Alu 14 299 -13 1528 199 3 17 chr11 6704006 6704307 -144079246 - AluJo SINE Alu -12 300 4 296 333 97 14 chr11 6705043 6705187 -144078366 + MER5B DNA MER1_type 1 156 -22 462 278 159 30 chr11 6706054 6706324 -144077229 - L2 LINE L2 -4 3309 3005 597 168 95 89 chr11 6707552 6707694 -144075859 + MIR SINE MIR 71 216 -46 2216 52 0 4 chr11 6707694 6707962 -144075591 + AluY SINE Alu 1 267 -44 597 168 95 89 chr11 6707962 6707998 -144075555 + MIR SINE MIR 216 250 -12 515 161 0 11 chr11 6708126 6708213 -144075340 - FLAM_A SINE Alu -15 127 42 385 216 123 56 chr11 6708518 6708680 -144074873 - L1ME4a LINE L1 -224 5897 5725 467 267 50 6 chr11 6708684 6708864 -144074689 - L1ME4a LINE L1 -450 5671 5484 1136 336 149 22 chr11 6708971 6710113 -144073440 + L2 LINE L2 1608 2894 -420 236 250 14 56 chr11 6710125 6710197 -144073356 - L2 LINE L2 -11 3302 3234 300 354 95 55 chr11 6710216 6710541 -144073012 + L2 LINE L2 2885 3222 -50 1165 201 94 0 chr11 6711025 6711269 -144072284 + AluJo SINE Alu 46 312 0 1036 279 136 9 chr11 6711382 6711844 -144071709 - MLT1G1 LTR MaLR -2 593 73 330 276 39 31 chr11 6711872 6711999 -144071554 - MLT1G1-int LTR MaLR -1 1370 1243 212 206 111 0 chr11 6712244 6712307 -144071246 - L2 LINE L2 -944 2370 2301 22 0 0 0 chr11 6712433 6712455 -144071098 + AT_rich Low_complexity Low_complexity 1 22 0 43854 40 7 1 chr11 6712455 6718582 -144064971 - L1PA3 LINE L1 -3 6152 7 21 0 0 0 chr11 6718589 6718610 -144064943 + AT_rich Low_complexity Low_complexity 1 21 0 2860 169 74 11 chr11 6720876 6721444 -144062109 + MER6A DNA MER2_type 2 605 0 2093 166 62 31 chr11 6722265 6722793 -144060760 - MLT2A2 LTR ERVL 0 554 1 191 219 55 55 chr11 6723018 6723091 -144060462 - L2 LINE L2 -469 2845 2773 205 167 0 30 chr11 6723639 6723705 -144059848 + (TA)n Simple_repeat Simple_repeat 2 65 0 308 244 37 52 chr11 6723841 6723976 -144059577 + L1ME LINE L1 5473 5605 -516 255 341 0 0 chr11 6724976 6725064 -144058489 - ERVL LTR ERVL -4845 919 832 280 207 61 24 chr11 6725118 6725200 -144058353 - ERVL LTR ERVL -5062 702 618 593 270 105 40 chr11 6725705 6726131 -144057422 - LTR33 LTR ERVL -8 513 3 663 204 85 11 chr11 6726341 6726517 -144057036 + MER5A DNA MER1_type 1 189 0 1515 208 98 106 chr11 6726827 6727516 -144056037 - L1MC4 LINE L1 -749 5397 5435 350 277 122 27 chr11 6727516 6727704 -144055849 - MER63A DNA MER1_type -3 207 2 1515 208 98 106 chr11 6727704 6728049 -144055504 - L1MC4 LINE L1 -710 5436 5090 1363 212 80 24 chr11 6728051 6728513 -144055040 - L1MC4 LINE L1 -1087 5059 4572 721 245 97 7 chr11 6729187 6729477 -144054076 - L1MC4 LINE L1 -1563 4583 4268 2863 127 27 43 chr11 6729929 6730442 -144053111 - LTR10B LTR ERV1 0 505 1 532 195 55 28 chr11 6730462 6730614 -144052939 + MER21B LTR ERV1 614 754 -109 310 241 69 23 chr11 6730660 6730747 -144052806 - MER77 LTR ERV1 -4 601 526 3288 163 96 33 chr11 6730747 6731056 -144052497 - LTR62 LTR ERVK -2 717 429 2383 121 32 69 chr11 6731056 6731560 -144051993 - LTR19A LTR ERV1 -1 485 1 3288 163 96 33 chr11 6731560 6731924 -144051629 - LTR62 LTR ERVK -290 429 1 1574 231 39 89 chr11 6731924 6732430 -144051123 - MER21B LTR ERV1 -368 495 15 2660 186 24 20 chr11 6732695 6733234 -144050319 - MER21B-int LTR ERV1 -55 4136 3596 2148 88 77 64 chr11 6733334 6733745 -144049808 + LTR14B LTR ERVK 1 608 0 309 282 24 24 chr11 6733788 6733958 -144049595 + L1ME3A LINE L1 3776 3945 -2201 620 266 108 22 chr11 6734221 6734544 -144049009 + L1ME3A LINE L1 5618 5968 -202 986 126 0 0 chr11 6734679 6734822 -144048731 + FLAM_C SINE Alu 1 143 0 475 171 34 0 chr11 6734829 6734917 -144048636 + AluSg/x SINE Alu 201 291 -18 684 76 0 0 chr11 6735084 6735176 -144048377 - AluY SINE Alu -10 301 210 2012 122 3 11 chr11 6735290 6735605 -144047948 + AluSx SINE Alu 1 313 0 238 236 103 94 chr11 6735855 6736058 -144047495 + L1 LINE L1 4765 4969 -1177 513 322 90 25 chr11 6736112 6736357 -144047196 - MIR SINE MIR 0 262 2 305 306 45 37 chr11 6737060 6737194 -144046359 + L1ME4a LINE L1 5297 5431 -690 1670 127 0 12 chr11 6737484 6737743 -144045810 + AluSx SINE Alu 40 295 -17 369 224 121 0 chr11 6737749 6737865 -144045688 + L1ME4a LINE L1 5767 5896 -225 266 314 0 0 chr11 6738043 6738113 -144045440 - L2 LINE L2 0 3313 3244 227 329 0 0 chr11 6738169 6738254 -144045299 + (TA)n Simple_repeat Simple_repeat 2 86 0 2358 98 0 0 chr11 6738657 6738962 -144044591 - AluSx SINE Alu -6 306 2 835 242 106 3 chr11 6739731 6740062 -144043491 - L1M4 LINE L1 -1571 4575 4211 1045 228 189 30 chr11 6740097 6740383 -144043170 - L1M4 LINE L1 -2437 3709 3470 2012 133 88 14 chr11 6740383 6740736 -144042817 + L1PA15 LINE L1 5787 6165 0 1045 228 189 30 chr11 6740736 6741011 -144042542 - L1M4 LINE L1 -2676 3470 3059 6634 64 26 1 chr11 6741041 6742688 -144040865 - L1PA7 LINE L1 0 6154 4482 1884 168 0 0 chr11 6742818 6743109 -144040444 + AluJb SINE Alu 3 293 -19 2104 115 3 3 chr11 6744017 6744313 -144039240 - AluSq SINE Alu -17 296 1 1193 255 97 28 chr11 6744327 6744938 -144038615 + L1MC5 LINE L1 7261 7913 -48 592 292 58 45 chr11 6745021 6745418 -144038135 + MLT1J1 LTR MaLR 43 444 -2 291 242 30 0 chr11 6745427 6745493 -144038060 + L2 LINE L2 3188 3255 -17 308 266 125 23 chr11 6745649 6745777 -144037776 + L2 LINE L2 3170 3310 -3 22 35 0 0 chr11 6746366 6746395 -144037158 + AT_rich Low_complexity Low_complexity 1 29 0 790 200 69 23 chr11 6746419 6746594 -144036959 - MER58A DNA MER1_type -15 209 27 12854 39 6 1 chr11 6747141 6749484 -144034069 - L1PA5 LINE L1 -4 6150 3791 6456 97 52 0 chr11 6749484 6750455 -144033098 - L1MA1 LINE L1 -4 6298 5271 825 214 124 19 chr11 6751038 6751292 -144032261 - MLT1D LTR MaLR -2 503 199 441 147 27 0 chr11 6751296 6751371 -144032182 + MLT1B LTR MaLR 1 77 -313 1298 168 96 40 chr11 6751371 6751621 -144031932 + Tigger7 DNA MER2_type 1 264 -2223 577 177 0 10 chr11 6751626 6751722 -144031831 + Tigger7 DNA MER2_type 2392 2486 -1 * 1393 183 46 3 chr11 6751722 6752003 -144031550 + MLT1B LTR MaLR 75 367 -23 820 201 22 22 chr11 6752001 6752180 -144031373 - MSTD LTR MaLR -217 179 1 * 1048 196 43 33 chr11 6752384 6752660 -144030893 + L1ME2 LINE L1 5738 6016 -148 730 214 0 0 chr11 6752865 6752996 -144030557 + FLAM_C SINE Alu 1 131 -2 250 265 15 0 chr11 6753364 6753432 -144030121 + LTR50 LTR ERVL 1 69 -726 312 293 42 60 chr11 6753462 6753629 -144029924 + L1MC4 LINE L1 6912 7075 -967 27 29 0 0 chr11 6753932 6753966 -144029587 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr11 6754033 6754054 -144029499 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 6754128 6754163 -144029390 + AT_rich Low_complexity Low_complexity 1 35 0 31 26 0 0 chr11 6754486 6754524 -144029029 + AT_rich Low_complexity Low_complexity 1 38 0 7712 22 2 0 chr11 6754836 6756447 -144027106 - L1PA3 LINE L1 -2 6153 4541 10960 29 0 0 chr11 6756447 6757779 -144025774 + L1P LINE L1 2453 3784 -2362 527 341 39 45 chr11 6758009 6758338 -144025215 + L1ME LINE L1 5254 5560 -561 2207 108 3 3 chr11 6758338 6758634 -144024919 - AluSq SINE Alu -17 296 1 527 341 39 45 chr11 6758634 6758807 -144024746 + L1ME LINE L1 5560 5733 -388 8175 181 33 17 chr11 6759090 6761768 -144021785 + L1PA16 LINE L1 3456 6166 0 228 139 0 0 chr11 6763049 6763085 -144020468 + MER92B LTR ERV1 1 36 -600 2244 92 20 0 chr11 6763105 6763400 -144020153 + AluSg SINE Alu 5 305 -5 355 92 154 0 chr11 6763404 6763469 -144020084 - MADE1 DNA Mariner 0 80 6 320 169 0 0 chr11 6763512 6763571 -144019982 + MER92B LTR ERV1 431 489 -147 1375 286 73 24 chr11 6763579 6763985 -144019568 + ERVL LTR ERVL 3282 3718 -2046 2739 136 38 17 chr11 6763985 6764462 -144019091 + LTR45B LTR ERV1 3 489 0 1375 286 73 24 chr11 6764462 6764551 -144019002 + ERVL LTR ERVL 3718 3801 -1963 186 189 0 0 chr11 6764970 6765007 -144018546 + (CA)n Simple_repeat Simple_repeat 2 38 0 442 242 134 46 chr11 6766120 6766508 -144017045 + MLT1H LTR MaLR 26 495 -54 2889 185 33 2 chr11 6767011 6767551 -144016002 + MER41D LTR ERV1 1 557 0 625 253 102 32 chr11 6767554 6767898 -144015655 - HAL1 LINE L1 -87 2420 2053 2561 170 26 65 chr11 6767938 6768519 -144015034 - MER82 DNA MER2_type 0 653 96 192 279 72 27 chr11 6768532 6768643 -144014910 + MIR SINE MIR 106 221 -41 328 284 34 68 chr11 6768709 6768885 -144014668 - MIR3 SINE MIR -29 179 10 183 216 0 0 chr11 6769275 6769312 -144014241 - MIR SINE MIR -223 39 3 199 292 92 77 chr11 6769326 6769456 -144014097 + L2 LINE L2 2941 3072 -200 1063 268 180 7 chr11 6769760 6770176 -144013377 + L2 LINE L2 2528 3012 -301 404 298 88 6 chr11 6770275 6770446 -144013107 - L1ME LINE L1 -460 5661 5477 641 139 101 32 chr11 6771904 6772062 -144011491 + MER53 DNA DNA 3 171 -18 227 224 0 35 chr11 6772175 6772233 -144011320 - HAL1b LINE L1 -628 720 665 364 277 116 37 chr11 6772246 6772500 -144011053 - HAL1b LINE L1 -750 1652 345 235 245 98 37 chr11 6772534 6772697 -144010856 - HAL1 LINE L1 -1183 1324 1152 230 175 0 18 chr11 6775927 6775984 -144007569 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 292 207 49 0 chr11 6776544 6776626 -144006927 + MLT1H LTR MaLR 464 549 0 260 256 64 48 chr11 6777291 6777416 -144006137 - MIR SINE MIR -48 214 88 263 339 70 0 chr11 6777690 6777805 -144005748 - MIR SINE MIR -62 200 78 39 80 0 0 chr11 6778094 6778182 -144005371 + AT_rich Low_complexity Low_complexity 1 88 0 22 56 0 0 chr11 6778316 6778352 -144005201 + AT_rich Low_complexity Low_complexity 1 36 0 307 286 47 23 chr11 6778572 6778647 -144004906 - L1MC4a LINE L1 -1913 5895 5823 2402 194 83 21 chr11 6778647 6779179 -144004374 + MLT1F1 LTR MaLR 1 565 -2 307 286 47 23 chr11 6779179 6779274 -144004279 - L1MC4a LINE L1 -1985 5823 5721 812 226 18 128 chr11 6779950 6780495 -144003058 - L1MC5 LINE L1 -738 7223 6739 45 0 0 0 chr11 6781528 6781573 -144001980 + AT_rich Low_complexity Low_complexity 1 45 0 740 293 98 53 chr11 6781589 6782365 -144001188 + L1M4 LINE L1 2199 2939 -3207 1765 174 0 3 chr11 6782365 6782667 -144000886 + AluJb SINE Alu 1 301 0 6696 174 21 6 chr11 6782673 6784796 -143998757 + L1PA15 LINE L1 4015 6159 -6 740 293 98 53 chr11 6784796 6786028 -143997525 + L1M4 LINE L1 2943 4304 -1842 319 265 46 71 chr11 6786357 6786640 -143996913 + L1P LINE L1 4759 5034 -1112 1209 272 96 38 chr11 6787033 6787532 -143996021 - MLT1F LTR MaLR -10 532 52 267 255 50 93 chr11 6787759 6787878 -143995675 + MIR SINE MIR 33 147 -61 471 288 126 28 chr11 6789283 6789498 -143994055 + MIR SINE MIR 7 242 -20 363 276 138 8 chr11 6790142 6790265 -143993288 - L1PA15-16 LINE L1 -5567 1282 1144 27 62 0 0 chr11 6790971 6791019 -143992534 + AT_rich Low_complexity Low_complexity 1 48 0 72 96 0 0 chr11 6791116 6791335 -143992218 + AT_rich Low_complexity Low_complexity 1 219 0 208 187 41 0 chr11 6791335 6791458 -143992095 + (TA)n Simple_repeat Simple_repeat 1 128 0 1958 169 82 17 chr11 6791512 6791914 -143991639 - MSTA LTR MaLR 0 428 1 252 246 88 18 chr11 6791938 6792052 -143991501 + L1MEc LINE L1 1551 1672 -5049 516 325 93 58 chr11 6792751 6793148 -143990405 + HAL1 LINE L1 1124 1534 -973 319 310 36 7 chr11 6793335 6793538 -143990015 + L1MEc LINE L1 2430 2636 -3904 4675 33 0 0 chr11 6793971 6794862 -143988691 + L1PA3 LINE L1 5070 6155 0 421 164 277 66 chr11 6794863 6795119 -143988434 + L2 LINE L2 1405 1714 -1600 1201 198 50 4 chr11 6795127 6795365 -143988188 - MLT1A1 LTR MaLR 0 365 117 3031 248 85 58 chr11 6795465 6796625 -143986928 + L2 LINE L2 1723 2914 -400 978 281 82 54 chr11 6798215 6798603 -143984950 + L2 LINE L2 2894 3292 -21 680 289 105 14 chr11 6800720 6801186 -143982367 - L1ME3A LINE L1 -35 6127 5594 450 192 104 63 chr11 6801221 6801411 -143982142 - L1MD3 LINE L1 -61 7934 7520 228 200 50 0 chr11 6801442 6801502 -143982051 - L1ME3A LINE L1 -564 5606 5544 2957 188 102 24 chr11 6801613 6802362 -143981191 - L1MC3 LINE L1 -273 7512 6706 1786 130 7 40 chr11 6802873 6803010 -143980543 + AluSx SINE Alu 1 141 -171 279 0 0 0 chr11 6803010 6803041 -143980512 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1786 130 7 40 chr11 6803041 6803203 -143980350 + AluSx SINE Alu 141 290 -22 914 214 24 29 chr11 6803245 6803455 -143980098 + MER20 DNA MER1_type 7 215 -4 258 250 158 0 chr11 6803819 6803939 -143979614 + MIR SINE MIR 69 207 -55 289 268 134 0 chr11 6804443 6804525 -143979028 - MIR SINE MIR -58 204 112 * 406 333 159 17 chr11 6804523 6804932 -143978621 - L2 LINE L2 -1381 1933 1467 226 350 50 0 chr11 6805335 6805415 -143978138 + MIR SINE MIR 20 103 -159 185 333 133 54 chr11 6805426 6805924 -143977629 - L2 LINE L2 -2238 1076 540 306 322 82 12 chr11 6806034 6806205 -143977348 - MIR SINE MIR -21 241 59 195 42 0 0 chr11 6807228 6807252 -143976301 + (TA)n Simple_repeat Simple_repeat 1 24 0 1756 144 35 75 chr11 6808082 6808429 -143975124 + MER1B DNA MER1_type 1 333 -6 292 229 0 0 chr11 6808965 6809026 -143974527 - L1M4 LINE L1 -1363 4783 4723 253 235 0 0 chr11 6809210 6809261 -143974292 - L1ME4a LINE L1 -87 6034 5984 199 307 67 0 chr11 6809439 6809514 -143974039 - L2 LINE L2 0 3272 3193 31 0 0 0 chr11 6810088 6810119 -143973434 + AT_rich Low_complexity Low_complexity 1 31 0 523 278 62 46 chr11 6811946 6812187 -143971366 - LTR16A LTR ERVL -189 261 17 462 312 88 6 chr11 6812749 6812919 -143970634 - MIR SINE MIR 0 262 79 247 265 103 0 chr11 6813360 6813428 -143970125 + L2 LINE L2 3149 3223 -49 187 79 53 0 chr11 6813606 6813644 -143969909 + (TA)n Simple_repeat Simple_repeat 1 40 0 536 319 58 9 chr11 6813662 6813888 -143969665 - MIR SINE MIR -20 242 6 316 313 10 30 chr11 6814034 6814133 -143969420 - MIR SINE MIR -115 147 51 233 380 78 7 chr11 6814163 6814305 -143969248 - L3 LINE CR1 -234 1343 1192 2273 82 0 23 chr11 6816919 6817224 -143966329 - AluSc SINE Alu -11 298 1 2062 123 7 10 chr11 6817654 6817955 -143965598 + AluSx SINE Alu 1 300 -12 36 53 0 0 chr11 6818681 6818738 -143964815 + AT_rich Low_complexity Low_complexity 1 57 0 6636 127 20 14 chr11 6818897 6820374 -143963179 - L1MA3 LINE L1 0 6305 4823 548 43 0 0 chr11 6821933 6822002 -143961551 + L1M1 LINE L1 5723 5791 -514 320 338 94 57 chr11 6823826 6824054 -143959499 - MIR SINE MIR -2 260 23 326 318 141 5 chr11 6824109 6824307 -143959246 - L1ME LINE L1 -453 5668 5444 33 73 0 0 chr11 6824405 6824473 -143959080 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr11 6828045 6828066 -143955487 + AT_rich Low_complexity Low_complexity 1 21 0 1479 191 146 45 chr11 6828417 6828836 -143954717 - LTR40c LTR ERVL 0 465 5 3937 236 67 40 chr11 6828840 6829929 -143953624 - HERVL40 LTR ERVL 0 5530 4413 592 296 109 49 chr11 6830066 6830895 -143952658 - L1ME LINE L1 -1221 4925 4041 7743 130 43 5 chr11 6830949 6832778 -143950775 - L1PA6 LINE L1 0 6154 4255 1175 276 140 23 chr11 6832782 6833781 -143949772 - L1ME LINE L1 -2280 3866 2751 1231 206 39 31 chr11 6833850 6834136 -143949417 - AluJo SINE Alu -22 290 3 308 300 93 0 chr11 6834216 6834356 -143949197 - L1ME LINE L1 -3576 2570 2418 2222 120 0 0 chr11 6834811 6835111 -143948442 - AluSx SINE Alu -12 300 1 781 265 57 33 chr11 6835802 6836047 -143947506 + MIR SINE MIR 1 251 -11 207 167 0 0 chr11 6836827 6836863 -143946690 + (CATA)n Simple_repeat Simple_repeat 2 37 0 479 361 17 11 chr11 6837194 6837374 -143946179 + MER5A DNA MER1_type 8 188 -1 1199 221 32 4 chr11 6837553 6837806 -143945747 - MLT1H1 LTR MaLR 0 555 296 1731 252 143 26 chr11 6837821 6838435 -143945118 - MER50 LTR ERV1 -23 711 26 379 278 87 17 chr11 6838435 6838550 -143945003 - MER50 LTR ERV1 -611 123 1 456 303 98 15 chr11 6838581 6838783 -143944770 - MLT1H1 LTR MaLR -348 219 1 3348 209 58 24 chr11 6838890 6839642 -143943911 - MER21B LTR ERV1 -62 801 24 3155 146 49 12 chr11 6840157 6840727 -143942826 - LTR59 LTR ERV1 -6 591 1 245 294 65 0 chr11 6840882 6840974 -143942579 + L1 LINE L1 3852 3949 -2197 613 203 115 0 chr11 6841598 6841746 -143941807 + MER96B DNA MER1_type? 253 417 0 363 285 124 0 chr11 6841813 6841999 -143941554 - L1M4 LINE L1 -2938 3208 3000 551 289 93 50 chr11 6841999 6842363 -143941190 + L2 LINE L2 2934 3313 0 2150 131 73 14 chr11 6843028 6843372 -143940181 - THE1B LTR MaLR 0 364 1 1182 102 71 31 chr11 6843384 6843609 -143939944 + L1MB2 LINE L1 5938 6171 0 196 148 33 33 chr11 6843609 6843644 -143939909 + (TTAAA)n Simple_repeat Simple_repeat 2 39 -23 2474 84 0 0 chr11 6843644 6843955 -143939598 + AluY SINE Alu 1 311 0 196 148 33 33 chr11 6843955 6843980 -143939573 + (TTAAA)n Simple_repeat Simple_repeat 38 62 0 1397 94 11 0 chr11 6843995 6844176 -143939377 + AluSq SINE Alu 1 183 -130 1682 161 42 7 chr11 6844282 6844568 -143938985 - AluJo SINE Alu -16 296 1 723 199 27 120 chr11 6844571 6844717 -143938836 - L1ME2 LINE L1 -152 6012 5909 2330 98 10 0 chr11 6844717 6845022 -143938531 - AluSx SINE Alu -4 308 1 723 199 27 120 chr11 6845022 6845205 -143938348 - L1ME2 LINE L1 -255 5909 5710 314 240 104 48 chr11 6896808 6896933 -143886620 + HAL1 LINE L1 1 132 -2375 1455 150 29 60 chr11 6897414 6897496 -143886057 - MLT1F1 LTR MaLR 0 595 512 2397 93 3 0 chr11 6897496 6897806 -143885747 - AluSp SINE Alu -2 311 1 1455 150 29 60 chr11 6897806 6898006 -143885547 - MLT1F1 LTR MaLR -83 512 294 416 270 18 49 chr11 6898270 6898433 -143885120 - Charlie8 DNA MER1_type -2201 216 59 332 339 48 16 chr11 6898477 6898601 -143884952 + HAL1 LINE L1 754 881 -1626 80 63 0 0 chr11 6899079 6899222 -143884331 + AT_rich Low_complexity Low_complexity 1 143 0 328 164 60 0 chr11 6899752 6899819 -143883734 + MIR SINE MIR 24 94 -168 229 355 21 0 chr11 6900887 6901076 -143882477 - L1M4 LINE L1 -3549 2597 2405 312 286 9 0 chr11 6901087 6901199 -143882354 + L1ME3A LINE L1 5802 5914 -250 309 266 29 86 chr11 6901277 6901416 -143882137 + L1ME3A LINE L1 5963 6093 -77 538 275 68 68 chr11 6901808 6902059 -143881494 - MIR SINE MIR 0 262 12 189 0 0 0 chr11 6902467 6902488 -143881065 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 214 203 0 109 chr11 6902674 6902738 -143880815 + L2 LINE L2 3255 3311 -2 575 190 78 0 chr11 6902949 6903065 -143880488 + MLT2B1 LTR ERVL 2 126 -394 915 258 154 20 chr11 6903344 6903642 -143879911 + MLT2B1 LTR ERVL 129 466 -54 238 50 50 0 chr11 6903731 6903771 -143879782 + (TA)n Simple_repeat Simple_repeat 2 43 0 315 0 0 0 chr11 6903774 6903809 -143879744 + (CA)n Simple_repeat Simple_repeat 2 36 0 1599 163 8 127 chr11 6903820 6904213 -143879340 + MER7A DNA MER2_type 1 344 -2 386 61 0 0 chr11 6904223 6904272 -143879281 + MLT2B1 LTR ERVL 472 520 0 242 319 52 43 chr11 6905012 6905128 -143878425 - L2 LINE L2 -6 3266 3150 1116 286 79 44 chr11 6905446 6905604 -143877949 - L2 LINE L2 0 3313 3162 353 32 63 0 chr11 6905604 6905667 -143877886 + (TA)n Simple_repeat Simple_repeat 2 68 0 1116 286 79 44 chr11 6905667 6906248 -143877305 - L2 LINE L2 -151 3162 2472 6132 96 4 30 chr11 6907878 6908808 -143874745 - L1P LINE L1 -3504 2642 1737 * 10599 77 11 1 chr11 6908804 6910709 -143872844 + L1P3 LINE L1 3899 5819 -335 423 217 275 7 chr11 6911742 6911880 -143871673 + MER5A DNA MER1_type 9 183 -6 297 0 0 0 chr11 6911966 6911999 -143871554 + (TA)n Simple_repeat Simple_repeat 1 33 0 592 374 65 39 chr11 6912313 6912620 -143870933 + L2 LINE L2 2013 2311 -1003 1499 230 19 17 chr11 6912620 6912981 -143870572 + MLT1A1 LTR MaLR 2 363 -2 592 374 65 39 chr11 6912981 6913400 -143870153 + L2 LINE L2 2311 2758 -556 5073 217 65 41 chr11 6913937 6914076 -143869477 + L1MC4 LINE L1 6490 6624 -1418 201 39 0 0 chr11 6914076 6914102 -143869451 + (CA)n Simple_repeat Simple_repeat 2 27 0 5073 217 65 41 chr11 6914102 6915478 -143868075 + L1MC4 LINE L1 6624 8041 -1 664 296 79 38 chr11 6915612 6915852 -143867701 + MIR SINE MIR 3 252 -10 552 288 64 38 chr11 6916461 6916697 -143866856 + MIR SINE MIR 1 242 -20 28 71 0 0 chr11 6916826 6916882 -143866671 + AT_rich Low_complexity Low_complexity 1 56 0 988 173 9 33 chr11 6916935 6917149 -143866404 - L1MD1 LINE L1 -248 6388 6180 1945 145 3 0 chr11 6917258 6917561 -143865992 - AluSx SINE Alu -8 304 1 8512 210 64 40 chr11 6917562 6921440 -143862113 - L1MD1 LINE L1 -455 6181 2399 414 0 0 0 chr11 6921440 6921486 -143862067 + (TA)n Simple_repeat Simple_repeat 1 46 0 8582 38 0 20 chr11 6921487 6923343 -143860210 - L1PA5 LINE L1 -7 6147 4313 8512 210 64 40 chr11 6923343 6924126 -143859427 - L1MD1 LINE L1 -4236 2400 1391 22 56 0 0 chr11 6924728 6924764 -143858789 + AT_rich Low_complexity Low_complexity 1 36 0 2139 116 3 17 chr11 6925316 6925617 -143857936 + AluSx SINE Alu 1 297 -15 207 318 118 0 chr11 6925775 6925860 -143857693 + L2 LINE L2 2764 2858 -456 450 367 91 39 chr11 6926103 6926668 -143856885 - L2 LINE L2 -213 3059 2469 229 323 16 0 chr11 6926814 6926876 -143856677 + L2 LINE L2 3186 3248 -24 280 206 16 63 chr11 6927590 6927653 -143855900 + MLT1F LTR MaLR 1 60 -482 1762 180 0 3 chr11 6927670 6927953 -143855600 - AluJo SINE Alu -30 282 1 560 294 0 12 chr11 6927956 6928119 -143855434 + MLT1F LTR MaLR 49 209 -333 1130 65 13 0 chr11 6928222 6928375 -143855178 + L1PA7 LINE L1 5929 6083 -71 1001 176 38 0 chr11 6928415 6928625 -143854928 - L1MD3 LINE L1 -1 7994 7777 506 269 59 0 chr11 6929164 6929283 -143854270 - MER5A DNA MER1_type -62 127 2 431 235 18 71 chr11 6929284 6929454 -143854099 - L1MC5 LINE L1 -876 7085 6925 * 771 255 0 59 chr11 6929450 6929689 -143853864 - L1MC4 LINE L1 -866 7002 6718 614 297 76 10 chr11 6929931 6930234 -143853319 - L1ME4a LINE L1 -269 5852 5530 2460 37 0 10 chr11 6930782 6931076 -143852477 - AluY SINE Alu -20 291 1 665 310 162 18 chr11 6931289 6931676 -143851877 + L2 LINE L2 2687 3127 -186 402 298 121 24 chr11 6931811 6931935 -143851618 + L2 LINE L2 3177 3312 -1 443 215 75 0 chr11 6932070 6932177 -143851376 - MIR SINE MIR -50 212 98 527 231 52 29 chr11 6933117 6933290 -143850263 + L2 LINE L2 2173 2349 -965 508 270 166 43 chr11 6933285 6933563 -143849990 - L2 LINE L2 0 3313 3002 * 433 308 160 0 chr11 6933927 6934083 -143849470 - MER5A DNA MER1_type 0 189 9 270 291 100 18 chr11 6934334 6934444 -143849109 - MIR SINE MIR -108 154 36 187 352 110 11 chr11 6934795 6934886 -143848667 + L2 LINE L2 3169 3268 -4 2086 115 3 0 chr11 6935112 6935399 -143848154 - AluSg SINE Alu -22 288 1 318 306 58 16 chr11 6935489 6935610 -143847943 + MIR SINE MIR 76 201 -61 685 265 85 36 chr11 6936456 6936864 -143846689 + MLT1H LTR MaLR 13 549 0 2607 55 0 0 chr11 6937571 6937878 -143845675 + AluY SINE Alu 1 307 -4 180 0 0 0 chr11 6937878 6937898 -143845655 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 274 376 11 0 chr11 6938548 6938641 -143844912 + LTR67 LTR ERVL 97 190 -367 289 164 36 0 chr11 6938912 6938967 -143844586 + LTR33A LTR ERVL 444 500 -23 201 226 32 0 chr11 6939356 6939418 -143844135 + (TA)n Simple_repeat Simple_repeat 2 65 0 7956 169 53 51 chr11 6940014 6941828 -143841725 + L1MC3 LINE L1 5968 7785 0 1458 64 0 16 chr11 6941974 6942185 -143841368 + AluSq SINE Alu 112 313 0 838 217 87 129 chr11 6942185 6943087 -143840466 + L1MC5 LINE L1 7049 7912 -49 348 218 0 0 chr11 6943120 6943207 -143840346 + (TA)n Simple_repeat Simple_repeat 1 87 0 1434 249 78 11 chr11 6943214 6943588 -143839965 - LTR16A LTR ERVL 0 450 52 1812 169 60 69 chr11 6944761 6945231 -143838322 - MER31B LTR ERV1 0 661 1 584 316 65 71 chr11 6945505 6945954 -143837599 + L2 LINE L2 2827 3272 0 21 0 0 31 chr11 6946768 6946779 -143836774 + AT_rich Low_complexity Low_complexity 1 11 -20 2072 58 11 0 chr11 6946779 6947053 -143836500 - L1PA8 LINE L1 -10 6162 5886 21 0 0 31 chr11 6947053 6947073 -143836480 + AT_rich Low_complexity Low_complexity 11 31 0 892 315 86 47 chr11 6947099 6947890 -143835663 - HAL1 LINE L1 -1590 917 96 1514 256 71 86 chr11 6947984 6948300 -143835253 - L1MC4 LINE L1 0 8042 7723 2414 88 0 7 chr11 6948300 6948606 -143834947 + AluSg SINE Alu 3 306 -4 1514 256 71 86 chr11 6948606 6949201 -143834352 - L1MC4 LINE L1 -319 7723 7120 4879 91 13 4 chr11 6949201 6949891 -143833662 - L1PA16 LINE L1 -11 6155 5460 1514 256 71 86 chr11 6949891 6951194 -143832359 - L1MC4 LINE L1 -922 7120 5846 2070 114 17 3 chr11 6951194 6951470 -143832083 + AluSx SINE Alu 1 283 -29 226 0 0 0 chr11 6951470 6951495 -143832058 + (CAAA)n Simple_repeat Simple_repeat 1 132 0 2070 114 17 3 chr11 6951495 6951508 -143832045 + AluSx SINE Alu 283 294 -18 1514 256 71 86 chr11 6951508 6951790 -143831763 - L1MC4 LINE L1 -2196 5846 5561 4657 51 20 3 chr11 6951878 6952466 -143831087 + L1PA7 LINE L1 5556 6153 -1 1480 226 86 47 chr11 6954375 6954861 -143828692 + L1M1 LINE L1 12 516 -7049 * 5131 31 0 6 chr11 6954826 6955461 -143828092 - L1PA3 LINE L1 -3279 2867 2237 21276 26 9 0 chr11 6955461 6958764 -143824789 + L1PA3 LINE L1 2841 6152 -3 337 154 0 0 chr11 6958778 6958843 -143824710 + L1PA5 LINE L1 6084 6148 -6 17745 148 34 12 chr11 6958870 6961824 -143821729 + L1M1 LINE L1 502 3521 -4044 2128 85 0 22 chr11 6961836 6962154 -143821399 + L1MA1 LINE L1 5888 6198 -104 22 0 0 0 chr11 6963384 6963406 -143820147 + AT_rich Low_complexity Low_complexity 1 22 0 1350 153 138 89 chr11 6963551 6963725 -143819828 - Charlie1b DNA MER1_type -2238 523 359 4463 136 20 8 chr11 6963725 6964491 -143819062 - L1MA5 LINE L1 -2 6298 5524 1350 153 138 89 chr11 6964491 6964766 -143818787 - Charlie1b DNA MER1_type -2402 359 52 212 336 143 0 chr11 6964852 6964971 -143818582 + MIR SINE MIR 127 262 0 30 34 0 34 chr11 6965612 6965648 -143817905 + AT_rich Low_complexity Low_complexity 1 36 -21 2874 0 0 0 chr11 6965648 6965955 -143817598 - AluY SINE Alu -4 307 1 30 34 0 34 chr11 6965955 6965977 -143817576 + AT_rich Low_complexity Low_complexity 36 57 0 2185 106 61 35 chr11 6965977 6966354 -143817199 - L1PA16 LINE L1 -6 6160 5774 2100 109 12 34 chr11 6966448 6966768 -143816785 + AluSq SINE Alu 1 313 0 278 250 42 65 chr11 6966901 6967069 -143816484 + L1MEc LINE L1 1399 1562 -4834 22 35 0 0 chr11 6967594 6967623 -143815930 + AT_rich Low_complexity Low_complexity 1 29 0 2210 118 6 13 chr11 6967842 6968156 -143815397 + AluSx SINE Alu 1 312 0 1356 191 93 17 chr11 6968170 6968515 -143815038 + L1M4 LINE L1 4101 4471 -1675 * 1518 227 41 49 chr11 6968500 6969032 -143814521 + L1M4 LINE L1 4747 5274 -872 341 343 7 7 chr11 6969146 6969292 -143814261 + L1M4 LINE L1 4557 4702 -1444 21 0 0 0 chr11 6969423 6969444 -143814109 + AT_rich Low_complexity Low_complexity 1 21 0 3989 164 44 16 chr11 6969820 6970267 -143813286 - L1MA9 LINE L1 -59 6253 5771 2065 112 0 26 chr11 6970267 6970570 -143812983 - AluSx SINE Alu -17 295 1 3989 164 44 16 chr11 6970570 6970937 -143812616 - L1MA9 LINE L1 -541 5771 5416 5141 70 14 0 chr11 6971123 6971790 -143811763 + L1PA8 LINE L1 5488 6163 -9 1189 274 34 62 chr11 6972436 6972966 -143810587 + MER69 DNA AcHobo 697 1211 -1315 1092 202 56 50 chr11 6972969 6973150 -143810403 + MER69 DNA AcHobo 2128 2307 -219 1376 163 48 0 chr11 6973150 6973402 -143810151 + L1PA16 LINE L1 5893 6156 -10 1092 202 56 50 chr11 6973402 6973616 -143809937 + MER69 DNA AcHobo 2307 2525 -1 262 339 51 0 chr11 6974460 6974578 -143808975 - L3 LINE CR1 -17 1560 1437 361 272 120 13 chr11 6974682 6974840 -143808713 + L1M4 LINE L1 4922 5096 -1050 453 337 32 40 chr11 6974857 6975109 -143808444 - MIR SINE MIR -6 256 7 261 239 113 7 chr11 6975112 6975254 -143808299 + L1M4 LINE L1 5104 5260 -886 374 378 54 14 chr11 6975358 6975580 -143807973 + L2 LINE L2 2868 3098 -215 549 264 147 78 chr11 6975834 6976270 -143807283 + MLT1J LTR MaLR 9 474 -37 569 297 109 32 chr11 6976467 6976878 -143806675 - L1ME LINE L1 -367 5797 5355 21 36 0 0 chr11 6976895 6976923 -143806630 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr11 6977074 6977110 -143806443 + AT_rich Low_complexity Low_complexity 1 36 0 487 288 161 35 chr11 6977335 6977758 -143805795 + L1MC4 LINE L1 4226 4701 -1445 22 0 0 0 chr11 6977813 6977835 -143805718 + AT_rich Low_complexity Low_complexity 1 22 0 455 291 200 15 chr11 6978259 6978734 -143804819 + L1MC4 LINE L1 5255 5817 -1991 2145 132 0 0 chr11 6979033 6979328 -143804225 - AluSx SINE Alu -15 297 3 1671 240 52 75 chr11 6979442 6980074 -143803479 - L1ME3A LINE L1 -9 6161 5547 1881 164 106 13 chr11 6980074 6980453 -143803100 + MLT2D LTR ERVL 1 414 0 1671 240 52 75 chr11 6980453 6980553 -143803000 - L1ME3A LINE L1 -623 5547 5446 447 286 117 34 chr11 6980583 6981110 -143802443 - L1M3 LINE L1 -329 5839 5255 582 311 53 19 chr11 6981166 6981372 -143802181 + MIR SINE MIR 2 214 -48 389 326 117 25 chr11 6981412 6981814 -143801739 - L1M3 LINE L1 -941 5205 4767 301 279 0 0 chr11 6982130 6982191 -143801362 + MER91B DNA MER1_type 1 61 -129 517 277 32 0 chr11 6982479 6982634 -143800919 + MLT1J1 LTR MaLR 1 160 -286 407 234 28 19 chr11 6982670 6982777 -143800776 + MER21B LTR ERV1 1 108 -755 1237 204 29 32 chr11 6982877 6983156 -143800397 + MER21B LTR ERV1 475 752 -111 495 285 140 10 chr11 6983184 6983384 -143800169 + MLT1J2 LTR MaLR 196 421 -29 241 405 72 27 chr11 6983885 6984258 -143799295 + L2 LINE L2 2850 3239 -33 188 271 0 0 chr11 6984399 6984447 -143799106 + L2 LINE L2 3263 3310 -3 747 245 164 2 chr11 6984899 6985334 -143798219 + L1MC4 LINE L1 6468 7072 -970 1066 278 16 0 chr11 6985336 6985649 -143797904 + L1MC4 LINE L1 7239 7556 -486 1797 140 52 3 chr11 6985649 6985935 -143797618 - AluJb SINE Alu -12 300 1 21 57 0 0 chr11 6986455 6986490 -143797063 + AT_rich Low_complexity Low_complexity 1 35 0 526 12 60 0 chr11 6987278 6987361 -143796192 + (TA)n Simple_repeat Simple_repeat 2 89 0 183 42 0 0 chr11 6988112 6988136 -143795417 + (CA)n Simple_repeat Simple_repeat 1 24 0 393 260 122 8 chr11 6988907 6989030 -143794523 + MIR SINE MIR 53 189 -73 3827 271 97 36 chr11 6989036 6990667 -143792886 - L2 LINE L2 0 3313 1551 783 254 15 5 chr11 6990667 6990872 -143792681 - MER63A DNA MER1_type -3 207 1 3827 271 97 36 chr11 6990872 6990985 -143792568 - L2 LINE L2 -1762 1551 1446 25 75 0 0 chr11 6991282 6991335 -143792218 + AT_rich Low_complexity Low_complexity 1 53 0 398 323 124 33 chr11 6991535 6992136 -143791417 + L2 LINE L2 1921 2665 -649 444 280 35 30 chr11 6992192 6992392 -143791161 + L1ME4a LINE L1 5635 5835 -286 350 254 88 18 chr11 6993464 6993578 -143789975 + L2 LINE L2 3151 3272 0 330 270 204 26 chr11 6993888 6994040 -143789513 + L2 LINE L2 2236 2414 -900 623 272 94 6 chr11 6994274 6994324 -143789229 - MIR SINE MIR -1 261 217 184 59 59 0 chr11 6994324 6994358 -143789195 + (TA)n Simple_repeat Simple_repeat 1 36 0 623 272 94 6 chr11 6994358 6994487 -143789066 - MIR SINE MIR -45 217 66 522 325 101 18 chr11 6994721 6995282 -143788271 - HAL1b LINE L1 -682 1686 361 698 365 100 9 chr11 6996531 6997092 -143786461 - L2 LINE L2 -338 2976 2365 920 346 64 10 chr11 6997914 6998322 -143785231 + LTR16A LTR ERVL 16 445 -5 29 28 0 0 chr11 6998849 6998885 -143784668 + AT_rich Low_complexity Low_complexity 1 36 0 344 270 92 46 chr11 7001268 7001442 -143782111 + MLT1K LTR MaLR 174 355 -233 507 194 0 43 chr11 7001548 7001734 -143781819 + GA-rich Low_complexity Low_complexity 1 178 0 182 130 39 26 chr11 7002705 7002782 -143780771 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 487 341 59 15 chr11 7002809 7003217 -143780336 - L1ME LINE L1 -475 5687 5262 1569 92 8 0 chr11 7003299 7003538 -143780015 - L1MA5 LINE L1 -2 6298 6058 2423 45 0 3 chr11 7003607 7003899 -143779654 - AluY SINE Alu -20 291 1 184 298 85 0 chr11 7004269 7004316 -143779237 + L2 LINE L2 3168 3218 -54 667 62 21 0 chr11 7004669 7004766 -143778787 + AluY SINE Alu 213 311 0 300 313 45 18 chr11 7005101 7005213 -143778340 + L2 LINE L2 3152 3266 -6 32 57 0 0 chr11 7005275 7005328 -143778225 + AT_rich Low_complexity Low_complexity 1 53 0 985 145 0 13 chr11 7005703 7005862 -143777691 - FRAM SINE Alu -9 167 11 1427 328 76 57 chr11 7006040 7007740 -143775813 - L1ME LINE L1 -722 5442 3699 319 302 24 40 chr11 7007839 7007965 -143775588 + L2 LINE L2 3190 3313 0 451 354 62 11 chr11 7008105 7008379 -143775174 - HAL1b LINE L1 -759 589 302 1637 264 16 75 chr11 7009403 7010033 -143773520 + MLT1E LTR MaLR 1 593 0 213 39 0 0 chr11 7010392 7010418 -143773135 + (T)n Simple_repeat Simple_repeat 1 26 0 6530 16 10 1 chr11 7010454 7011250 -143772303 - L1HS LINE L1 0 6155 5353 349 23 0 0 chr11 7011247 7011290 -143772263 + L1P LINE L1 1945 1987 -4159 * 876 238 63 0 chr11 7011762 7011968 -143771585 + MIR SINE MIR 1 219 -43 207 0 0 0 chr11 7012505 7012528 -143771025 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 231 315 94 31 chr11 7013157 7013284 -143770269 - L2 LINE L2 -2 3270 3136 180 0 0 0 chr11 7014043 7014063 -143769490 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 637 292 31 122 chr11 7014251 7015017 -143768536 - L2 LINE L2 -1 3312 2616 227 229 38 84 chr11 7015215 7015346 -143768207 + LTR67 LTR ERVL 6 130 -427 * 1679 239 69 58 chr11 7015290 7015810 -143767743 + MLT1F LTR MaLR 7 532 -10 391 334 89 38 chr11 7015846 7016160 -143767393 + LTR67 LTR ERVL 117 446 -111 264 255 28 9 chr11 7016239 7016345 -143767208 - MLT1L LTR MaLR -16 599 492 586 296 11 0 chr11 7016468 7016647 -143766906 - MLT1L LTR MaLR -345 270 90 1036 309 146 6 chr11 7016726 7017247 -143766306 - L2 LINE L2 -683 2631 2038 189 0 0 0 chr11 7017481 7017502 -143766051 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 324 48 0 0 chr11 7018288 7018330 -143765223 + (CA)n Simple_repeat Simple_repeat 2 43 0 552 309 41 37 chr11 7018950 7019196 -143764357 + MIR SINE MIR 5 251 -11 709 261 77 18 chr11 7019416 7019638 -143763915 + MIR SINE MIR 14 248 -14 1973 142 3 0 chr11 7019845 7020151 -143763402 + AluSq SINE Alu 1 307 0 243 246 0 33 chr11 7020534 7020595 -143762958 + CT-rich Low_complexity Low_complexity 3 61 0 354 294 55 0 chr11 7021664 7021773 -143761780 + L3 LINE CR1 272 386 -1191 310 359 41 7 chr11 7022019 7022164 -143761389 + L3 LINE CR1 1067 1216 -361 431 253 116 50 chr11 7022179 7022420 -143761133 + MIR SINE MIR 2 258 -4 237 163 0 0 chr11 7022483 7022532 -143761021 + T-rich Low_complexity Low_complexity 1 49 0 1131 210 213 9 chr11 7022627 7022956 -143760597 - MSTD LTR MaLR 0 396 1 221 348 0 14 chr11 7023651 7023720 -143759833 + MIR SINE MIR 20 87 -175 459 252 122 22 chr11 7023722 7023944 -143759609 - MLT1H LTR MaLR 0 555 312 1030 196 14 9 chr11 7023958 7024177 -143759376 - MLT1A2 LTR MaLR 0 374 155 2457 122 3 0 chr11 7024186 7024555 -143758998 - L1PB1 LINE L1 -1 6150 5781 309 183 0 0 chr11 7024555 7024615 -143758938 + (TA)n Simple_repeat Simple_repeat 2 61 0 324 283 0 22 chr11 7024615 7024707 -143758846 + L1MC4 LINE L1 6614 6703 -1339 * 327 311 0 0 chr11 7024627 7024717 -143758836 - L1MC4 LINE L1 -1339 6703 6614 276 149 0 0 chr11 7024724 7024771 -143758782 + (TA)n Simple_repeat Simple_repeat 2 48 0 3613 131 6 4 chr11 7024771 7025675 -143757878 - L1P5 LINE L1 -360 5791 4888 2191 191 0 0 chr11 7025675 7026131 -143757422 + L1P5 LINE L1 4403 4858 -1288 517 164 207 7 chr11 7026136 7026276 -143757277 - MLT1A2 LTR MaLR -218 156 1 698 256 57 9 chr11 7026357 7026568 -143756985 - MLT1H LTR MaLR -326 223 3 288 293 50 0 chr11 7026571 7026670 -143756883 + MIR SINE MIR 86 189 -73 404 280 96 0 chr11 7026725 7026882 -143756671 - MIR SINE MIR -3 259 88 263 418 7 7 chr11 7027301 7027442 -143756111 + L2 LINE L2 2509 2649 -665 186 122 41 20 chr11 7027966 7028015 -143755538 + GA-rich Low_complexity Low_complexity 3 52 0 385 240 34 75 chr11 7028034 7028180 -143755373 + MIR SINE MIR 82 221 -41 306 0 0 0 chr11 7028180 7028214 -143755339 + (CA)n Simple_repeat Simple_repeat 2 35 0 243 169 68 34 chr11 7028265 7028324 -143755229 + L3 LINE CR1 1514 1574 -3 406 296 152 73 chr11 7028931 7029798 -143753755 - L1M2 LINE L1 -5538 1311 550 1852 243 109 46 chr11 7032280 7032906 -143750647 - L2 LINE L2 -339 2975 2311 408 342 32 11 chr11 7033020 7033207 -143750346 - L3 LINE CR1 -176 1401 1211 416 222 193 22 chr11 7033372 7033507 -143750046 + MER5A DNA MER1_type 29 186 -3 258 279 51 13 chr11 7033524 7033603 -143749950 - MIR SINE MIR -70 138 57 * 560 316 113 42 chr11 7033598 7034011 -143749542 - L3 LINE CR1 -588 989 547 563 162 19 195 chr11 7034011 7034221 -143749332 + MER5B DNA MER1_type 4 176 -2 334 224 241 9 chr11 7035667 7035783 -143747770 + MIR SINE MIR 2 144 -118 408 161 69 0 chr11 7035975 7036062 -143747491 + MIR SINE MIR 68 160 -102 606 154 173 0 chr11 7036076 7036232 -143747321 - MER53 DNA DNA -6 183 1 197 333 118 0 chr11 7036233 7036335 -143747218 + MIR SINE MIR 149 262 0 219 410 38 0 chr11 7037176 7037281 -143746272 - L2 LINE L2 -8 3264 3156 4373 273 66 29 chr11 7038459 7040124 -143743429 - L2 LINE L2 -2 3311 1586 213 271 0 17 chr11 7040165 7040224 -143743329 - L2 LINE L2 -1075 2239 2182 1873 157 68 6 chr11 7040224 7040562 -143742991 - MLT1A1 LTR MaLR 0 365 7 4279 244 136 21 chr11 7040569 7042073 -143741480 - L2 LINE L2 -1129 2185 510 381 293 126 18 chr11 7042186 7042408 -143741145 - L2 LINE L2 -826 2488 2243 270 377 66 0 chr11 7042465 7042571 -143740982 + MER5B DNA MER1_type 2 114 -64 389 309 50 53 chr11 7044646 7045025 -143738528 + L1 LINE L1 2970 3347 -2799 280 209 110 11 chr11 7045334 7045425 -143738128 - L1ME LINE L1 -477 5644 5545 281 219 14 17 chr11 7045448 7045536 -143738017 + L1 LINE L1 3604 3690 -2456 23 0 0 0 chr11 7045706 7045729 -143737824 + AT_rich Low_complexity Low_complexity 1 23 0 1726 216 43 11 chr11 7045808 7046252 -143737301 - L1MB8 LINE L1 -7 6171 5714 670 284 67 69 chr11 7046477 7046953 -143736600 - MLT1J LTR MaLR -31 480 6 25 0 0 0 chr11 7047265 7047290 -143736263 + AT_rich Low_complexity Low_complexity 1 25 0 390 21 0 0 chr11 7047909 7047956 -143735597 + (CA)n Simple_repeat Simple_repeat 2 48 0 28 29 0 0 chr11 7048242 7048277 -143735276 + AT_rich Low_complexity Low_complexity 1 35 0 2212 102 0 0 chr11 7048650 7048957 -143734596 - AluY SINE Alu 0 307 1 512 280 63 21 chr11 7049127 7049270 -143734283 + MIR SINE MIR 23 171 -91 203 361 0 15 chr11 7049401 7049531 -143734022 + CT-rich Low_complexity Low_complexity 4 131 0 703 291 60 98 chr11 7049614 7050095 -143733458 - L2 LINE L2 -4 3268 2806 204 156 22 0 chr11 7050405 7050450 -143733103 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2476 40 0 0 chr11 7050870 7051166 -143732387 + L1PA8 LINE L1 5874 6169 -3 2228 103 10 3 chr11 7051406 7051706 -143731847 - AluSx SINE Alu -10 302 1 568 317 204 24 chr11 7052299 7052876 -143730677 + L2 LINE L2 1709 2389 -925 490 209 243 46 chr11 7052849 7053112 -143730441 + L2 LINE L2 2932 3246 -67 * 507 353 55 36 chr11 7053208 7053571 -143729982 + L2 LINE L2 2417 2786 -528 311 313 139 72 chr11 7053670 7053854 -143729699 + L2 LINE L2 2918 3088 -184 2049 110 0 28 chr11 7053854 7054177 -143729376 + AluSg SINE Alu 1 315 0 311 313 139 72 chr11 7054177 7054323 -143729230 + L2 LINE L2 3088 3271 -1 2182 115 17 136 chr11 7055017 7055496 -143728057 - MSTC LTR MaLR -6 422 1 326 325 156 12 chr11 7056226 7056386 -143727167 + L3 LINE CR1 206 388 -1189 193 246 145 29 chr11 7056691 7056760 -143726793 - MER5A DNA MER1_type -67 122 46 * 325 323 0 11 chr11 7056701 7056794 -143726759 + MER5A DNA MER1_type 98 189 0 2591 203 44 32 chr11 7057142 7057818 -143725735 + MER63C DNA MER1_type 1 684 -246 763 197 19 110 chr11 7057896 7058160 -143725393 + MER63C DNA MER1_type 691 930 0 26 0 0 0 chr11 7059946 7059972 -143723581 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr11 7059998 7060033 -143723520 + (CA)n Simple_repeat Simple_repeat 2 36 0 210 128 0 0 chr11 7060042 7060081 -143723472 + (GA)n Simple_repeat Simple_repeat 1 39 0 306 210 101 67 chr11 7060106 7060225 -143723328 - HAL1 LINE L1 -106 2401 2279 310 195 12 49 chr11 7060237 7060319 -143723234 - L1MC4 LINE L1 -1339 6703 6625 26 30 0 0 chr11 7060655 7060688 -143722865 + AT_rich Low_complexity Low_complexity 1 33 0 255 271 14 0 chr11 7060792 7060862 -143722691 + MIR SINE MIR 85 155 -107 776 271 121 16 chr11 7061424 7061877 -143721676 - HAL1 LINE L1 -761 1746 1246 2555 102 19 11 chr11 7062256 7062628 -143720925 - THE1C LTR MaLR 0 375 1 10050 114 52 5 chr11 7062628 7064136 -143719417 - THE1C-int LTR MaLR 0 1580 1 2537 87 11 8 chr11 7064141 7064510 -143719043 - THE1C LTR MaLR -5 370 1 1039 153 58 36 chr11 7066367 7066590 -143716963 + L1MB3 LINE L1 5949 6176 -7 779 303 25 8 chr11 7067925 7068362 -143715191 - LTR33 LTR ERVL 0 521 14 187 225 167 25 chr11 7069518 7069638 -143713915 - MIR3 SINE MIR -61 147 11 1150 175 0 11 chr11 7071043 7071362 -143712191 - MLT1A1 LTR MaLR 0 365 1 2302 173 23 17 chr11 7071362 7071830 -143711723 - MLT1A1-int LTR MaLR 0 1735 1214 3209 173 14 53 chr11 7072120 7072813 -143710740 - MLT1A1-int LTR MaLR -1069 666 1 244 282 167 0 chr11 7072931 7073009 -143710544 + L2 LINE L2 3201 3291 -22 301 355 161 0 chr11 7073238 7073393 -143710160 - MIR SINE MIR -77 185 6 183 205 0 0 chr11 7073631 7073670 -143709883 + CT-rich Low_complexity Low_complexity 4 42 0 226 122 0 0 chr11 7073689 7073738 -143709815 - L1MC1 LINE L1 -2 6331 6283 243 0 0 0 chr11 7074148 7074175 -143709378 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 345 24 0 0 chr11 7074174 7074216 -143709337 + (GA)n Simple_repeat Simple_repeat 1 42 0 441 194 241 36 chr11 7074333 7074586 -143708967 - L1MC5 LINE L1 -32 7929 7625 894 244 148 46 chr11 7074650 7075367 -143708186 - HAL1 LINE L1 -628 1879 1090 594 196 98 25 chr11 7076542 7076705 -143706848 - MER91B DNA MER1_type -2 188 14 303 326 42 0 chr11 7076755 7076850 -143706703 - L2 LINE L2 -18 3254 3156 478 267 0 8 chr11 7077066 7077197 -143706356 - MER94 DNA DNA 0 134 5 236 324 0 0 chr11 7077455 7077523 -143706030 - MLT1I LTR MaLR -244 165 98 484 336 8 0 chr11 7078673 7078801 -143704752 + L2 LINE L2 3141 3269 -3 875 290 126 9 chr11 7079087 7079522 -143704031 + LTR16C LTR ERVL 1 486 -5 459 318 76 21 chr11 7080662 7080898 -143702655 - MIR SINE MIR 0 262 14 470 304 154 0 chr11 7081105 7081332 -143702221 + MIR SINE MIR 1 262 0 197 328 0 16 chr11 7083309 7083373 -143700180 - L3 LINE CR1 -3 1574 1512 741 319 57 15 chr11 7083616 7084020 -143699533 + L2 LINE L2 2862 3282 -31 2172 132 0 10 chr11 7087218 7087522 -143696031 - AluSx SINE Alu -11 301 1 2407 86 0 0 chr11 7087533 7087834 -143695719 - AluY SINE Alu -10 301 1 832 167 7 7 chr11 7088084 7088234 -143695319 + AluSp/q SINE Alu 161 310 -3 26 50 0 0 chr11 7089921 7089961 -143693592 + AT_rich Low_complexity Low_complexity 1 40 0 23 68 0 0 chr11 7093025 7093069 -143690484 + AT_rich Low_complexity Low_complexity 1 44 0 300 230 24 103 chr11 7093107 7093233 -143690320 - L1ME3 LINE L1 -93 6138 6023 401 277 115 49 chr11 7093390 7093841 -143689712 - L1ME3 LINE L1 -346 5885 5405 555 265 34 20 chr11 7093899 7094197 -143689356 - L1ME3 LINE L1 -884 5331 5030 1672 182 32 46 chr11 7094208 7094581 -143688972 - MLT1A2 LTR MaLR -6 368 1 557 262 89 52 chr11 7094685 7095166 -143688387 - L1ME3 LINE L1 -1315 4900 4402 2085 120 10 0 chr11 7095226 7095517 -143688036 - AluSq SINE Alu -19 294 1 616 275 27 8 chr11 7095637 7095895 -143687658 - L1ME3 LINE L1 -2259 3956 3694 291 62 0 0 chr11 7096063 7096146 -143687407 - Alu SINE Alu 0 336 254 268 233 31 70 chr11 7096201 7096330 -143687223 - L1ME3 LINE L1 -4738 1658 1535 309 349 120 5 chr11 7096677 7096869 -143686684 - L1ME3 LINE L1 -5840 365 152 311 384 90 35 chr11 7097191 7097480 -143686073 + L2 LINE L2 2967 3271 -1 1366 171 65 92 chr11 7098426 7098893 -143684660 - MER66A LTR ERV1 0 478 97 783 196 4 92 chr11 7098954 7099183 -143684370 + MER63A DNA MER1_type 1 209 -1 583 281 40 37 chr11 7099802 7100130 -143683423 - L1ME3A LINE L1 -221 5932 5604 1130 298 107 40 chr11 7100238 7100698 -143682855 - L1ME3A LINE L1 -1874 4255 3827 183 80 0 0 chr11 7100698 7100723 -143682830 + (TG)n Simple_repeat Simple_repeat 2 26 0 1130 298 107 40 chr11 7100723 7101754 -143681799 - L1ME3A LINE L1 -2302 3827 2664 11407 32 1 1 chr11 7102015 7103457 -143680096 - L1PA2 LINE L1 -1493 4653 3212 7915 8 0 4 chr11 7103457 7105015 -143678538 + L1PA2 LINE L1 4624 6155 0 551 290 123 29 chr11 7105041 7105382 -143678171 - L1ME3A LINE L1 -3998 2312 1940 628 273 90 17 chr11 7105891 7106272 -143677281 - L1MEd LINE L1 -4862 1257 908 1287 189 56 50 chr11 7106939 7107334 -143676219 + L1ME1 LINE L1 5644 6028 -138 186 396 36 0 chr11 7107496 7107607 -143675946 - L2 LINE L2 -1683 1631 1517 1849 94 0 0 chr11 7107608 7107841 -143675712 - AluSq SINE Alu -21 292 60 1255 100 6 0 chr11 7107841 7108001 -143675552 - AluSq SINE Alu -152 161 1 234 357 14 14 chr11 7108113 7108256 -143675297 + MER117 DNA MER1_type 2 144 -53 1350 143 0 63 chr11 7108398 7108636 -143674917 + AluJb SINE Alu 68 290 -22 1310 264 33 24 chr11 7108928 7109379 -143674174 - LTR16A1 LTR ERVL -2 455 1 589 307 126 69 chr11 7110686 7111269 -143672284 - L2 LINE L2 -6 3266 2656 2883 213 37 43 chr11 7111361 7112247 -143671306 - L1ME1 LINE L1 -4 6162 5282 * 18096 189 10 16 chr11 7112216 7117383 -143666170 - L1PA13 LINE L1 -5 7596 2471 2123 319 6 9 chr11 7117455 7118135 -143665418 - L1PA13 LINE L1 -5936 1645 968 2528 124 8 3 chr11 7118201 7118563 -143664990 + THE1B LTR MaLR 1 364 0 1929 164 40 11 chr11 7118707 7119061 -143664492 - THE1B LTR MaLR 0 364 1 11519 95 8 4 chr11 7119061 7120635 -143662918 - THE1B-int LTR MaLR 0 1580 1 2237 105 44 36 chr11 7120635 7120996 -143662557 - THE1B LTR MaLR 0 364 1 2474 209 63 37 chr11 7121128 7121834 -143661719 - L1M4 LINE L1 -803 5343 4610 306 0 0 0 chr11 7121834 7121868 -143661685 + (CA)n Simple_repeat Simple_repeat 2 35 0 2474 209 63 37 chr11 7121868 7122021 -143661532 - L1M4 LINE L1 -1536 4610 4462 1066 259 41 12 chr11 7122024 7122368 -143661185 - L1MEc LINE L1 -5999 397 44 1518 307 87 60 chr11 7122368 7123479 -143660074 - L2 LINE L2 -809 2505 1365 227 210 16 32 chr11 7123702 7123764 -143659789 - L1ME4a LINE L1 -82 6039 5979 2127 124 0 10 chr11 7124138 7124436 -143659117 - AluSq SINE Alu -18 295 1 261 0 0 0 chr11 7125590 7125619 -143657934 + (T)n Simple_repeat Simple_repeat 1 29 0 1072 129 72 5 chr11 7126084 7126277 -143657276 + L1MB4 LINE L1 5975 6180 0 237 33 0 0 chr11 7126280 7126310 -143657243 + (CA)n Simple_repeat Simple_repeat 2 31 0 405 285 136 56 chr11 7126560 7126774 -143656779 - MIR SINE MIR -29 233 3 282 167 15 30 chr11 7129774 7129840 -143653713 + Charlie7 DNA MER1_type 41 105 -2507 1822 230 127 44 chr11 7129962 7130670 -143652883 + LTR41 LTR ERVL 1 767 -6 382 147 100 73 chr11 7130680 7130830 -143652723 - Charlie7 DNA MER1_type -28 2584 2431 276 202 73 65 chr11 7130851 7130975 -143652578 - Charlie7 DNA MER1_type -1891 721 597 21 0 0 0 chr11 7131035 7131056 -143652497 + AT_rich Low_complexity Low_complexity 1 21 0 291 271 110 8 chr11 7131113 7131231 -143652322 + L2 LINE L2 2630 2759 -555 236 241 203 45 chr11 7131827 7131960 -143651593 + MIR SINE MIR 109 262 0 218 286 0 0 chr11 7132353 7132423 -143651130 + L2 LINE L2 2994 3063 -209 228 258 90 22 chr11 7132600 7132689 -143650864 - MIR3 SINE MIR -28 180 86 228 232 85 24 chr11 7132812 7132894 -143650659 + L2 LINE L2 3182 3268 -4 281 347 146 22 chr11 7133713 7133981 -143649572 - L2 LINE L2 0 3313 3013 271 367 31 56 chr11 7133994 7134190 -143649363 - L2 LINE L2 -458 2856 2666 341 295 37 29 chr11 7134611 7134855 -143648698 - L1MDa LINE L1 -1435 5105 4860 308 304 88 35 chr11 7134855 7135082 -143648471 - L2 LINE L2 -23 3290 3052 778 277 126 47 chr11 7135162 7135755 -143647798 - L1MDa LINE L1 -1776 4764 4066 8505 35 0 0 chr11 7135755 7137550 -143646003 - L1PA3 LINE L1 0 6155 4357 778 277 126 47 chr11 7137550 7137909 -143645644 - L1MDa LINE L1 -2474 4066 3737 435 314 61 10 chr11 7138157 7138565 -143644988 - L1MDa LINE L1 -3208 3332 2904 2008 139 33 0 chr11 7138986 7139335 -143644218 - AluSx SINE Alu 0 359 1 251 242 95 32 chr11 7139584 7139839 -143643714 - L1MDa LINE L1 -3827 2713 2446 252 0 0 0 chr11 7139850 7139878 -143643675 + (T)n Simple_repeat Simple_repeat 1 28 0 265 394 0 15 chr11 7140009 7140141 -143643412 + L2 LINE L2 2562 2691 -623 921 342 138 35 chr11 7140230 7141267 -143642286 - L2 LINE L2 -839 2475 1332 319 277 77 108 chr11 7141355 7141485 -143642068 - MIR SINE MIR -105 157 32 268 278 48 63 chr11 7142400 7142526 -143641027 + L2 LINE L2 3149 3272 0 308 306 7 35 chr11 7143207 7143351 -143640202 - L1ME4a LINE L1 -112 6009 5870 237 287 105 27 chr11 7143500 7143796 -143639757 - L1ME4a LINE L1 -320 5801 5483 21 0 0 0 chr11 7143808 7143829 -143639724 + AT_rich Low_complexity Low_complexity 1 21 0 2365 32 39 39 chr11 7143973 7144281 -143639272 - AluY SINE Alu -3 308 1 282 270 37 42 chr11 7144392 7144607 -143638946 - L1ME4a LINE L1 -2341 5467 5254 820 222 74 17 chr11 7144764 7144994 -143638559 - MIR SINE MIR -2 260 18 3861 56 4 0 chr11 7145260 7145746 -143637807 - L1PA8 LINE L1 -11 6161 5674 3660 82 15 6 chr11 7145753 7146610 -143636943 - L1P3 LINE L1 -368 5786 4920 381 22 0 0 chr11 7146679 7146725 -143636828 + (CA)n Simple_repeat Simple_repeat 1 46 0 1926 145 0 6 chr11 7146805 7147122 -143636431 - L1PB1 LINE L1 -3 6148 5834 761 232 46 12 chr11 7147285 7147526 -143636027 + L1MB7 LINE L1 5935 6183 -1 257 333 25 0 chr11 7147581 7147743 -143635810 + Tigger8 DNA MER2_type 290 455 -211 311 322 80 36 chr11 7147944 7148245 -143635308 - L1ME4a LINE L1 -1325 4821 4508 2559 186 111 43 chr11 7148416 7149202 -143634351 - L1ME2 LINE L1 -9 6155 5317 1057 240 5 0 chr11 7149223 7149431 -143634122 - AluJb SINE Alu -20 292 84 358 162 0 15 chr11 7149446 7149514 -143634039 - FLAM SINE Alu -10 123 57 361 273 96 20 chr11 7149844 7150093 -143633460 - L1ME2 LINE L1 -2191 3955 3688 317 194 14 0 chr11 7150555 7150627 -143632926 + MER116 DNA Mariner 2 74 -6 8298 79 6 0 chr11 7150824 7152733 -143630820 - L1PA7 LINE L1 0 6154 4236 876 256 176 36 chr11 7152733 7153124 -143630429 + L2 LINE L2 2867 3312 -1 494 157 12 11 chr11 7153151 7153309 -143630244 + CT-rich Low_complexity Low_complexity 1 158 0 241 323 65 0 chr11 7153710 7153803 -143629750 + MIR SINE MIR 18 116 -92 246 255 0 0 chr11 7154079 7154130 -143629423 - L2 LINE L2 -23 3290 3240 259 275 66 22 chr11 7154148 7154239 -143629314 - MIR SINE MIR -30 232 138 451 237 61 9 chr11 7154719 7154833 -143628720 + MIR SINE MIR 24 143 -119 191 325 24 0 chr11 7155212 7155295 -143628258 - L2 LINE L2 -527 2787 2703 284 355 107 25 chr11 7156429 7156626 -143626927 - L3 LINE CR1 -227 1350 1138 5568 84 24 16 chr11 7156670 7157489 -143626064 + L1MA1 LINE L1 5473 6298 -4 22 56 0 0 chr11 7157521 7157557 -143625996 + AT_rich Low_complexity Low_complexity 1 36 0 990 328 177 16 chr11 7157603 7158292 -143625261 - L3 LINE CR1 -550 1027 228 687 268 97 68 chr11 7159131 7159556 -143623997 - L2 LINE L2 -695 2619 2183 246 325 44 100 chr11 7160569 7160729 -143622824 - MIR SINE MIR -70 192 42 483 221 177 12 chr11 7160794 7160962 -143622591 - HAL1 LINE L1 -93 2414 2275 285 51 0 0 chr11 7160962 7161001 -143622552 + (CA)n Simple_repeat Simple_repeat 1 39 0 483 221 177 12 chr11 7161001 7161154 -143622399 - HAL1 LINE L1 -232 2275 2040 2000 260 70 55 chr11 7161154 7162208 -143621345 + L2 LINE L2 2241 3313 0 330 26 0 0 chr11 7162240 7162279 -143621274 + (TG)n Simple_repeat Simple_repeat 2 40 0 755 154 18 35 chr11 7162396 7162565 -143620988 + L1PA13 LINE L1 5995 6160 -3 1772 274 90 64 chr11 7162586 7163088 -143620465 - L1M4 LINE L1 -1302 4844 4357 7292 40 0 11 chr11 7163088 7164220 -143619333 + L1PA4 LINE L1 5033 6154 -1 1772 274 90 64 chr11 7164220 7165717 -143617836 - L1M4 LINE L1 -1789 4357 2793 653 225 46 0 chr11 7165919 7166070 -143617483 + MER77 LTR ERV1 1 158 -447 601 158 0 0 chr11 7166077 7166172 -143617381 + MER77 LTR ERV1 511 605 0 1825 123 40 7 chr11 7168035 7168336 -143615217 - L1PA6 LINE L1 -58 6096 5786 4359 169 42 28 chr11 7168811 7169612 -143613941 - L1PA16 LINE L1 -1 6165 5334 1571 185 0 50 chr11 7169612 7169915 -143613638 + AluJb SINE Alu 1 288 -24 4359 169 42 28 chr11 7169915 7170149 -143613404 - L1PA16 LINE L1 -832 5334 5105 10552 219 30 18 chr11 7170292 7172255 -143611298 - L1PA15-16 LINE L1 -869 5980 4042 4938 32 0 0 chr11 7172255 7172839 -143610714 - L1PA4 LINE L1 0 6155 5572 10552 219 30 18 chr11 7172839 7173316 -143610237 - L1PA15-16 LINE L1 -2807 4042 3572 1092 117 0 0 chr11 7173316 7173478 -143610075 - L1PB1 LINE L1 -2 6149 5988 10552 219 30 18 chr11 7173478 7174354 -143609199 - L1PA15-16 LINE L1 -3277 3572 2627 1677 224 91 83 chr11 7174374 7175110 -143608443 - L1ME1 LINE L1 -5 6230 5489 4461 257 84 27 chr11 7175125 7176697 -143606856 - L1ME1 LINE L1 -806 5409 3928 1873 78 0 4 chr11 7176697 7176929 -143606624 - AluY SINE Alu -5 306 76 4461 257 84 27 chr11 7176929 7176989 -143606564 - L1ME1 LINE L1 -2287 3928 3873 15456 137 29 33 chr11 7176989 7179730 -143603823 + Tigger4(Zombi) DNA MER2_type 1 2731 0 4461 257 84 27 chr11 7179730 7180440 -143603113 - L1ME1 LINE L1 -2342 3873 2909 1083 246 71 16 chr11 7180545 7181132 -143602421 - L1ME1 LINE L1 -3594 2621 2031 2152 228 49 72 chr11 7181134 7181396 -143602157 - L1MEc LINE L1 -3009 3206 2940 1828 157 35 7 chr11 7181396 7181682 -143601871 + AluJo SINE Alu 1 294 -18 2152 228 49 72 chr11 7181682 7182704 -143600849 - L1MEc LINE L1 -3275 2940 1970 319 286 11 0 chr11 7182777 7182868 -143600685 - MLT1K LTR MaLR -330 258 167 1032 186 83 10 chr11 7183315 7183519 -143600034 - MER20 DNA MER1_type 0 219 1 222 150 0 0 chr11 7183758 7183798 -143599755 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 352 180 90 60 chr11 7184048 7184148 -143599405 - L2 LINE L2 -17 3296 3194 12249 182 54 28 chr11 7184149 7184651 -143598902 - L1MA4A LINE L1 -7 6998 6510 297 0 0 0 chr11 7184651 7184684 -143598869 + (TA)n Simple_repeat Simple_repeat 2 34 0 12249 182 54 28 chr11 7184684 7185477 -143598076 - L1MA4A LINE L1 -495 6510 5739 2928 6 0 0 chr11 7185477 7185795 -143597758 - AluYb8 SINE Alu 0 318 1 12249 182 54 28 chr11 7185795 7186239 -143597314 - L1MA4A LINE L1 -1266 5739 5308 2218 89 7 0 chr11 7186239 7186543 -143597010 - AluSp SINE Alu 0 306 1 12249 182 54 28 chr11 7186543 7188971 -143594582 - L1MA4A LINE L1 -1697 5308 2944 2290 114 0 0 chr11 7188971 7189270 -143594283 - AluSq SINE Alu -14 299 1 12249 182 54 28 chr11 7189270 7191849 -143591704 - L1MA4A LINE L1 -4061 2944 43 741 211 0 0 chr11 7191879 7192012 -143591541 - FLAM_A SINE Alu 0 133 1 235 235 102 31 chr11 7192232 7192330 -143591223 + L2 LINE L2 3164 3268 -4 938 258 67 0 chr11 7194343 7194583 -143588970 + MIR SINE MIR 7 262 0 1524 191 86 3 chr11 7194590 7194905 -143588648 - MER2 DNA MER2_type 0 344 4 2218 116 3 0 chr11 7197730 7198024 -143585529 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr11 7198501 7198524 -143585029 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 227 258 90 17 chr11 7199084 7199172 -143584381 + MIR SINE MIR 9 101 -107 534 367 25 108 chr11 7199174 7199722 -143583831 - MLT1J LTR MaLR -7 504 2 240 301 29 19 chr11 7199729 7199832 -143583721 + (CTCA)n Simple_repeat Simple_repeat 1 104 0 185 378 61 0 chr11 7199876 7199958 -143583595 - L2 LINE L2 -49 3223 3137 305 258 0 0 chr11 7201136 7201198 -143582355 + MLT1J2 LTR MaLR 389 450 0 584 308 94 26 chr11 7201529 7201763 -143581790 + MIR SINE MIR 9 258 -4 684 300 38 9 chr11 7405013 7405247 -143378306 + MIR SINE MIR 22 262 0 8065 22 0 1 chr11 7407768 7409320 -143374233 - L1PA3 LINE L1 -223 5932 4383 189 0 0 0 chr11 7410981 7411002 -143372551 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 284 300 24 24 chr11 7411313 7411483 -143372070 + (CGAGG)n Simple_repeat Simple_repeat 5 174 0 1207 149 5 36 chr11 7413050 7413271 -143370282 - AluJo SINE Alu -98 214 1 1420 110 0 35 chr11 7413387 7413615 -143369938 - L1PA8A LINE L1 0 6131 5912 281 317 8 8 chr11 7414086 7414209 -143369344 + GA-rich Low_complexity Low_complexity 5 127 0 259 155 24 32 chr11 7414886 7415016 -143368537 + C-rich Low_complexity Low_complexity 1 128 0 449 298 137 6 chr11 7415821 7415982 -143367571 - MIR SINE MIR -35 227 46 1471 138 94 0 chr11 7416589 7416813 -143366740 + AluJo SINE Alu 11 255 -57 282 230 54 0 chr11 7416862 7416936 -143366617 + MIR SINE MIR 69 146 -116 683 330 67 28 chr11 7417378 7417766 -143365787 - L2 LINE L2 0 3272 2870 191 351 0 0 chr11 7417822 7417879 -143365674 - L2 LINE L2 -529 2785 2729 1688 246 93 35 chr11 7418665 7419375 -143364178 + L1M1 LINE L1 2286 3036 -4529 1435 109 5 0 chr11 7419403 7419587 -143363966 + AluSx SINE Alu 1 185 -127 4869 136 31 31 chr11 7419587 7420952 -143362601 + L1M2 LINE L1 4453 5813 -478 345 257 7 44 chr11 7422586 7422722 -143360831 + GA-rich Low_complexity Low_complexity 4 134 0 501 293 47 60 chr11 7422784 7422999 -143360554 + MIR SINE MIR 2 213 -49 297 264 85 12 chr11 7423306 7423445 -143360108 - MIR SINE MIR -52 156 2 299 310 38 32 chr11 7423990 7424148 -143359405 - L2 LINE L2 -35 3278 3120 279 192 128 0 chr11 7424206 7424284 -143359269 - MIR3 SINE MIR -37 171 84 1714 102 9 0 chr11 7424481 7424706 -143358847 - AluSq SINE Alu -86 227 1 329 320 19 39 chr11 7424737 7424943 -143358610 - L1ME LINE L1 -306 5815 5614 563 238 56 14 chr11 7425007 7425150 -143358403 + MIR SINE MIR 44 192 -70 189 345 0 0 chr11 7426293 7426351 -143357202 + MIR SINE MIR 201 258 -4 195 233 0 0 chr11 7427183 7427226 -143356327 + L2 LINE L2 3214 3256 -16 1316 111 79 14 chr11 7427657 7427873 -143355680 + MER4E LTR ERV1 536 765 -1 343 336 47 63 chr11 7428117 7428498 -143355055 - L1ME2 LINE L1 -297 5867 5493 189 121 0 0 chr11 7429163 7429196 -143354357 + (T)n Simple_repeat Simple_repeat 1 33 0 1652 29 10 0 chr11 7429198 7429406 -143354147 - L1PA2 LINE L1 -4 6151 5942 1634 161 4 11 chr11 7429512 7429773 -143353780 - AluJo SINE Alu -53 259 1 321 302 158 7 chr11 7431131 7431270 -143352283 + MIR3 SINE MIR 49 208 0 312 258 92 27 chr11 7431394 7431564 -143351989 + MIR SINE MIR 16 192 -70 219 257 204 0 chr11 7431644 7431757 -143351796 - MIR SINE MIR -12 250 115 1337 74 21 11 chr11 7432658 7432847 -143350706 + AluY SINE Alu 106 296 -15 387 370 61 0 chr11 7432867 7433032 -143350521 - L1M4 LINE L1 -2610 3536 3362 231 61 0 0 chr11 7433164 7433197 -143350356 + (GA)n Simple_repeat Simple_repeat 1 33 0 271 326 35 14 chr11 7435632 7435776 -143347777 - MIR SINE MIR -72 190 44 234 205 14 42 chr11 7435955 7436005 -143347548 + AluJ/monomer SINE Alu 1 31 -269 590 95 12 0 chr11 7436005 7436089 -143347464 - PABL_B LTR ERV1 0 667 583 1097 109 0 44 chr11 7436193 7436376 -143347177 - MER4E LTR ERV1 -244 522 348 1801 113 164 80 chr11 7436450 7436823 -143346730 + MER4A LTR ERV1 261 664 0 1700 154 19 70 chr11 7436823 7437154 -143346399 - MER4E LTR ERV1 -415 351 39 2309 90 3 0 chr11 7437154 7437442 -143346111 - AluSc SINE Alu -9 300 12 1700 154 19 70 chr11 7437442 7437480 -143346073 - MER4E LTR ERV1 -727 39 1 21 0 0 0 chr11 7437969 7437990 -143345563 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 7438222 7438243 -143345310 + (CAG)n Simple_repeat Simple_repeat 1 21 0 1110 70 0 0 chr11 7438327 7438456 -143345097 + AluY SINE Alu 1 129 -182 231 232 36 0 chr11 7440753 7440809 -143342744 + C-rich Low_complexity Low_complexity 5 62 0 693 215 41 6 chr11 7441086 7441258 -143342295 + MER96B DNA MER1_type? 1 178 -239 427 248 135 0 chr11 7441314 7441447 -143342106 + MER96B DNA MER1_type? 265 415 -2 199 280 84 56 chr11 7442455 7442562 -143340991 + MIR SINE MIR 102 211 -51 247 329 163 45 chr11 7442581 7442827 -143340726 + L3 LINE CR1 1294 1568 -9 2220 97 0 17 chr11 7443977 7444289 -143339264 - AluSx SINE Alu 0 307 1 304 215 0 15 chr11 7444289 7444354 -143339199 + MLT1H1 LTR MaLR 487 550 -5 357 277 15 29 chr11 7444737 7444874 -143338679 - MER5B DNA MER1_type -10 179 35 2488 73 0 3 chr11 7444959 7445262 -143338291 - AluY SINE Alu -9 302 1 420 204 250 66 chr11 7445344 7445406 -143338147 - MIR SINE MIR -12 250 201 2116 113 10 32 chr11 7445406 7445715 -143337838 - AluSx SINE Alu -10 302 1 420 204 250 66 chr11 7445715 7445848 -143337705 - MIR SINE MIR -61 201 19 307 224 168 19 chr11 7445946 7446053 -143337500 + L2 LINE L2 3150 3272 0 180 286 29 38 chr11 7446884 7446989 -143336564 + MIR SINE MIR 61 164 -98 203 366 188 0 chr11 7447309 7447421 -143336132 - MIR SINE MIR -73 189 57 820 287 12 16 chr11 7447936 7448183 -143335370 - MIR SINE MIR -1 261 16 459 157 0 0 chr11 7448213 7448302 -143335251 + (CA)n Simple_repeat Simple_repeat 1 89 0 256 340 0 0 chr11 7448997 7449100 -143334453 + (TG)n Simple_repeat Simple_repeat 1 103 0 1042 227 113 24 chr11 7450236 7450694 -143332859 - L1MEc LINE L1 -2624 3591 3093 * 1498 235 96 35 chr11 7450670 7451325 -143332228 - L1MEc LINE L1 -5052 1274 623 545 223 33 0 chr11 7451321 7451442 -143332111 - L1ME LINE L1 -368 5798 5674 * 2584 128 49 67 chr11 7451442 7451932 -143331621 + L1MD1 LINE L1 5693 6173 -69 563 170 116 27 chr11 7451932 7452044 -143331509 - FLAM_A SINE Alu -11 122 1 2584 128 49 67 chr11 7452044 7452108 -143331445 + L1MD1 LINE L1 6173 6237 -5 1726 161 0 14 chr11 7452264 7452556 -143330997 - AluSx SINE Alu -22 290 3 21 0 0 0 chr11 7452559 7452580 -143330973 + AT_rich Low_complexity Low_complexity 1 21 0 326 271 10 52 chr11 7452614 7452710 -143330843 + L1M LINE L1 5333 5424 -2384 331 295 77 11 chr11 7453037 7453220 -143330333 - HAL1 LINE L1 -855 1635 1441 21 0 0 0 chr11 7453271 7453292 -143330261 + AT_rich Low_complexity Low_complexity 1 21 0 6287 63 20 1 chr11 7453304 7454098 -143329455 - L1PA6 LINE L1 -2 6152 5344 4487 49 0 0 chr11 7454268 7454823 -143328730 - L1PA6 LINE L1 -887 5259 4705 502 277 26 46 chr11 7454882 7455191 -143328362 - L1MEd LINE L1 -1132 1358 971 2015 132 0 10 chr11 7455192 7455496 -143328057 - AluSx SINE Alu -11 301 1 261 0 0 0 chr11 7455526 7455555 -143327998 + (T)n Simple_repeat Simple_repeat 1 29 0 2250 80 0 10 chr11 7455839 7456141 -143327412 - AluY SINE Alu -12 299 1 2363 149 79 11 chr11 7456257 7456714 -143326839 - L1MA8 LINE L1 -2 6289 5802 1087 141 28 0 chr11 7456714 7456891 -143326662 + AluJb SINE Alu 2 183 -129 356 311 44 22 chr11 7457239 7457374 -143326179 + MIR3 SINE MIR 34 171 -37 211 217 22 0 chr11 7457701 7457747 -143325806 + MIR SINE MIR 173 219 -43 388 276 35 28 chr11 7457788 7457933 -143325620 + L2 LINE L2 2644 2789 -525 529 329 100 42 chr11 7458221 7458601 -143324952 + L1M4 LINE L1 4233 4634 -1512 212 186 34 17 chr11 7459045 7459104 -143324449 + A-rich Low_complexity Low_complexity 3 62 0 406 301 66 46 chr11 7459550 7459746 -143323807 + MIR3 SINE MIR 7 206 -2 190 315 54 95 chr11 7459860 7460155 -143323398 - L2 LINE L2 -22 3250 2968 318 269 19 46 chr11 7461615 7461723 -143321830 + MER91A DNA MER1_type 22 126 -70 248 163 61 0 chr11 7464324 7464373 -143319180 + L3 LINE CR1 1525 1576 -1 1565 160 0 42 chr11 7465978 7466266 -143317287 + AluJb SINE Alu 1 276 -36 242 203 0 29 chr11 7466272 7466341 -143317212 + GA-rich Low_complexity Low_complexity 4 70 0 1015 244 111 32 chr11 7466540 7466884 -143316669 - L2 LINE L2 -15 3298 2928 235 310 71 35 chr11 7467310 7467423 -143316130 + L3 LINE CR1 1291 1407 -170 380 302 191 41 chr11 7468532 7469049 -143314504 + L2 LINE L2 2378 2972 -342 247 401 139 22 chr11 7469167 7469583 -143313970 - L2 LINE L2 -1 3271 2807 252 291 97 37 chr11 7469598 7469732 -143313821 + HAL1 LINE L1 2 143 -2364 569 131 85 0 chr11 7469763 7469893 -143313660 - Charlie5 DNA MER1_type -27 2585 2445 209 321 98 18 chr11 7472050 7472162 -143311391 - L3 LINE CR1 -926 651 531 275 260 0 0 chr11 7472302 7472375 -143311178 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 271 253 26 148 chr11 7472413 7472642 -143310911 - L2 LINE L2 -74 3198 2998 1281 177 56 16 chr11 7472912 7473161 -143310392 + AluJo SINE Alu 1 259 -53 495 270 163 23 chr11 7474100 7474315 -143309238 + MLT1L LTR MaLR 371 615 0 212 200 0 0 chr11 7474881 7474916 -143308637 - MIR SINE MIR -63 145 111 410 208 171 20 chr11 7475161 7475310 -143308243 - MIR SINE MIR -48 214 50 701 303 57 10 chr11 7476835 7477173 -143306380 + L1ME LINE L1 5460 5812 -342 239 299 168 36 chr11 7477903 7478070 -143305483 + MER5A DNA MER1_type 1 189 0 240 35 0 0 chr11 7478174 7478203 -143305350 + (CA)n Simple_repeat Simple_repeat 2 30 0 605 221 12 81 chr11 7480132 7480304 -143303249 - MIR3 SINE MIR -39 169 10 244 344 33 25 chr11 7481349 7481471 -143302082 + L2 LINE L2 3101 3223 -49 3219 210 80 8 chr11 7481701 7482448 -143301105 + MER63C DNA MER1_type 21 821 -109 1870 117 0 7 chr11 7482452 7482733 -143300820 - AluJb SINE Alu -3 309 31 4449 64 0 9 chr11 7482733 7483283 -143300270 + PABL_A LTR ERV1 1 545 -115 736 266 117 38 chr11 7483787 7484103 -143299450 + MER102b DNA MER1_type 1 341 0 246 279 198 18 chr11 7484167 7484278 -143299275 - L2 LINE L2 -6 3266 3136 2061 202 155 4 chr11 7484941 7485411 -143298142 + MLT1G LTR MaLR 3 543 -47 2015 124 56 31 chr11 7486919 7487208 -143296345 + MLT1A1 LTR MaLR 1 302 -63 2149 87 0 10 chr11 7487208 7487497 -143296056 - AluSq SINE Alu -9 304 19 2015 124 56 31 chr11 7487497 7487563 -143295990 + MLT1A1 LTR MaLR 302 365 0 26 30 0 0 chr11 7488321 7488354 -143295199 + AT_rich Low_complexity Low_complexity 1 33 0 2369 76 3 0 chr11 7488374 7488678 -143294875 - AluSp SINE Alu -8 305 1 629 222 9 0 chr11 7489409 7489517 -143294036 - MER68 LTR ERV1 -1 561 453 1633 222 60 58 chr11 7489519 7490020 -143293533 - MER77 LTR ERV1 0 605 104 492 274 25 47 chr11 7490183 7490359 -143293194 + LTR16A1 LTR ERVL 240 383 -74 621 219 46 87 chr11 7490359 7490578 -143292975 - MER63A DNA MER1_type 0 210 1 492 274 25 47 chr11 7490578 7490650 -143292903 + LTR16A1 LTR ERVL 383 455 -2 441 299 30 12 chr11 7490903 7491067 -143292486 + HERVL LTR ERVL 3230 3396 -2258 984 231 38 14 chr11 7491544 7491820 -143291733 - MLT1H LTR MaLR -229 320 3 276 393 19 10 chr11 7491898 7492104 -143291449 + L2 LINE L2 2151 2358 -956 359 313 20 7 chr11 7493045 7493192 -143290361 - L1ME LINE L1 -350 5771 5623 326 340 115 13 chr11 7493323 7493479 -143290074 + MIR SINE MIR 1 172 -90 1206 247 53 51 chr11 7493482 7493915 -143289638 - L2 LINE L2 -1 3312 2879 3148 210 78 24 chr11 7493931 7495545 -143288008 - L1ME1 LINE L1 -135 6031 4333 3957 172 41 59 chr11 7495557 7495983 -143287570 - L1MB4 LINE L1 0 6180 5748 1908 113 0 3 chr11 7495983 7496267 -143287286 - AluSx SINE Alu -17 295 13 3957 172 41 59 chr11 7496267 7497189 -143286364 - L1MB4 LINE L1 -432 5748 4863 1829 192 3 6 chr11 7497189 7497501 -143286052 + AluJb SINE Alu 1 311 -1 3957 172 41 59 chr11 7497501 7497555 -143285998 - L1MB4 LINE L1 -1317 4863 4810 2282 125 0 0 chr11 7497838 7498150 -143285403 - AluSx SINE Alu 0 312 1 346 196 43 22 chr11 7500918 7501010 -143282543 + MER58A DNA MER1_type 42 135 0 264 297 91 29 chr11 7504569 7504744 -143278809 - L3 LINE CR1 -221 1356 1171 294 219 168 66 chr11 7505264 7505401 -143278152 - MIR SINE MIR -54 208 58 185 261 43 0 chr11 7505415 7505461 -143278092 + MIR SINE MIR 101 148 -60 1200 275 108 44 chr11 7505584 7506459 -143277094 - L2 LINE L2 -14 3299 2303 379 318 135 6 chr11 7508769 7508939 -143274614 - MIR3 SINE MIR -2 206 15 309 36 55 0 chr11 7510445 7510500 -143273053 + (TA)n Simple_repeat Simple_repeat 1 58 0 276 266 13 0 chr11 7511236 7511315 -143272238 - MIR3 SINE MIR -52 156 77 194 261 142 52 chr11 7512034 7512168 -143271385 + MIR3 SINE MIR 48 193 -15 211 224 0 35 chr11 7514217 7514275 -143269278 + CT-rich Low_complexity Low_complexity 4 59 0 1813 155 11 14 chr11 7514394 7514678 -143268875 + AluJo SINE Alu 14 296 -16 847 217 17 23 chr11 7514989 7515164 -143268389 - MER5A DNA MER1_type -7 182 9 566 211 8 0 chr11 7517025 7517148 -143266405 + L1MA8 LINE L1 6166 6289 -2 256 260 208 19 chr11 7517209 7517363 -143266190 - L3 LINE CR1 -102 1475 1293 490 291 150 30 chr11 7517376 7517476 -143266077 - MIR SINE MIR 0 262 175 2010 106 0 72 chr11 7517476 7517797 -143265756 - AluY SINE Alu -13 298 1 490 291 150 30 chr11 7517797 7517930 -143265623 - MIR SINE MIR -87 175 1 303 327 53 7 chr11 7517944 7518152 -143265401 - L3 LINE CR1 -344 1233 964 257 303 56 0 chr11 7518497 7518586 -143264967 - MIR3 SINE MIR -33 175 82 227 267 43 60 chr11 7518953 7519069 -143264484 + MIR SINE MIR 27 140 -68 778 154 0 0 chr11 7519197 7519314 -143264239 - FRAM SINE Alu -39 137 21 262 233 27 48 chr11 7519480 7519626 -143263927 + (GGGTG)n Simple_repeat Simple_repeat 3 145 0 223 171 0 0 chr11 7519894 7519935 -143263618 + (TG)n Simple_repeat Simple_repeat 2 42 0 322 312 101 0 chr11 7522415 7522553 -143261000 - MIR SINE MIR -21 241 90 403 244 130 0 chr11 7522944 7523059 -143260494 - MER94 DNA DNA -2 132 3 266 348 101 18 chr11 7523926 7524153 -143259400 - MIR SINE MIR -4 258 13 182 239 87 0 chr11 7524233 7524279 -143259274 + L2 LINE L2 3223 3272 0 315 154 67 67 chr11 7527594 7527698 -143255855 - L1ME4a LINE L1 -3 6118 6015 1574 79 4 35 chr11 7527758 7527985 -143255568 - AluSg/x SINE Alu -2 308 89 969 274 62 22 chr11 7528085 7528486 -143255067 - L1ME4a LINE L1 -213 5908 5492 2835 202 97 68 chr11 7528761 7529760 -143253793 + L1M3e LINE L1 978 2025 -5012 2321 121 0 6 chr11 7529760 7530075 -143253478 + AluSq SINE Alu 1 313 0 2835 202 97 68 chr11 7530075 7530216 -143253337 + L1M3e LINE L1 2025 2160 -4877 469 125 45 23 chr11 7530353 7530441 -143253112 + AluJ/FRAM SINE Alu 223 312 0 306 0 0 0 chr11 7530455 7530489 -143253064 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 688 236 40 5 chr11 7530489 7530679 -143252874 + L1ME1 LINE L1 3516 3715 -2431 * 3616 209 67 14 chr11 7530678 7531317 -143252236 + L1ME1 LINE L1 4434 5038 -1296 2404 92 0 16 chr11 7531317 7531633 -143251920 + AluY SINE Alu 1 311 0 3616 209 67 14 chr11 7531633 7532094 -143251459 + L1ME1 LINE L1 5038 5473 -861 2022 119 17 30 chr11 7532094 7532396 -143251157 + AluSx SINE Alu 1 298 -14 3616 209 67 14 chr11 7532396 7532945 -143250608 + L1ME1 LINE L1 5473 6332 -2 573 292 50 12 chr11 7533295 7533456 -143250097 - MIR3 SINE MIR -22 186 20 281 291 97 48 chr11 7533651 7533816 -143249737 - MIR3 SINE MIR -10 198 26 359 372 78 37 chr11 7535010 7535096 -143248457 + L2 LINE L2 1805 1886 -1428 2640 36 7 0 chr11 7535096 7535399 -143248154 - AluY SINE Alu -6 305 1 359 372 78 37 chr11 7535399 7535850 -143247703 + L2 LINE L2 1886 2364 -950 300 300 89 48 chr11 7536137 7536430 -143247123 + L2 LINE L2 2179 2483 -831 533 262 41 35 chr11 7536456 7536628 -143246925 + MLT1K LTR MaLR 69 241 -347 229 198 48 111 chr11 7536773 7536899 -143246654 + LTR67 LTR ERVL 432 549 -8 218 309 62 0 chr11 7537009 7537090 -143246463 + L2 LINE L2 2662 2747 -567 498 286 90 108 chr11 7537114 7537441 -143246112 - L2 LINE L2 -337 2977 2646 306 73 0 0 chr11 7537441 7537482 -143246071 + (CTCA)n Simple_repeat Simple_repeat 2 42 0 498 286 90 108 chr11 7537482 7537888 -143245665 - L2 LINE L2 -668 2646 2257 2095 98 4 4 chr11 7537955 7538230 -143245323 + AluSx SINE Alu 1 275 -37 342 266 65 43 chr11 7538388 7538527 -143245026 + HAL1 LINE L1 231 372 -2135 1499 147 4 25 chr11 7538529 7538774 -143244779 + AluJo SINE Alu 1 240 -72 321 87 0 0 chr11 7538840 7538886 -143244667 + AluJo SINE Alu 247 292 -10 618 299 43 9 chr11 7539027 7539238 -143244315 - MIR SINE MIR -44 218 1 605 263 81 84 chr11 7539301 7539636 -143243917 - L2 LINE L2 -809 2505 2172 983 318 84 44 chr11 7539685 7539843 -143243710 - L2 LINE L2 -2620 694 544 1748 108 43 49 chr11 7539843 7540178 -143243375 - AluY SINE Alu 0 311 1 983 318 84 44 chr11 7540178 7540364 -143243189 - L2 LINE L2 -2770 544 367 2430 95 3 0 chr11 7540364 7540670 -143242883 + AluSc SINE Alu 1 307 -2 983 318 84 44 chr11 7540670 7540943 -143242610 - L2 LINE L2 -2947 367 51 2221 123 0 3 chr11 7541176 7541477 -143242076 + AluSx SINE Alu 1 300 -12 387 273 21 103 chr11 7542237 7542431 -143241122 - MIR3 SINE MIR -30 178 1 2338 86 3 17 chr11 7542682 7542983 -143240570 - AluSc SINE Alu -12 297 1 1656 223 14 6 chr11 7544001 7544364 -143239189 + MLT2D LTR ERVL 1 366 -48 331 324 89 51 chr11 7544658 7545028 -143238525 + LTR67 LTR ERVL 36 419 -138 233 226 48 16 chr11 7545001 7545063 -143238490 + MIR SINE MIR 83 146 -116 * 899 309 112 11 chr11 7546350 7546726 -143236827 + LTR16C LTR ERVL 78 491 0 390 194 10 51 chr11 7546900 7546998 -143236555 + MLT1K LTR MaLR 479 572 -16 855 207 66 10 chr11 7547442 7547640 -143235913 + ORSL DNA AcHobo 1 209 -66 1334 280 74 11 chr11 7548640 7549100 -143234453 + L2 LINE L2 2824 3312 -1 238 49 0 0 chr11 7549249 7549290 -143234263 + Alu SINE Alu 259 299 0 237 206 315 22 chr11 7549308 7549400 -143234153 - L2 LINE L2 -4 3309 3191 198 250 71 0 chr11 7549704 7549760 -143233793 + L2 LINE L2 2688 2747 -567 1864 197 28 23 chr11 7550332 7550722 -143232831 + MSTD LTR MaLR 1 392 -4 21 0 0 0 chr11 7551353 7551374 -143232179 + AT_rich Low_complexity Low_complexity 1 21 0 8293 40 16 0 chr11 7551374 7553101 -143230452 - L1PA5 LINE L1 -7 6147 4405 241 292 0 0 chr11 7553297 7553369 -143230184 + MIR SINE MIR 191 262 0 2194 125 3 0 chr11 7554390 7554694 -143228859 - AluSq SINE Alu -8 305 1 4813 57 24 3 chr11 7555918 7556497 -143227056 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr11 7557006 7557028 -143226525 + (T)n Simple_repeat Simple_repeat 1 22 0 255 304 38 25 chr11 7557057 7557136 -143226417 + MIR SINE MIR 27 106 -102 1583 237 37 37 chr11 7557737 7558168 -143225385 + MLT1J1 LTR MaLR 16 446 0 22241 32 2 0 chr11 7558180 7560823 -143222730 + L1P LINE L1 1770 4418 -1728 22 0 0 0 chr11 7561225 7561247 -143222306 + AT_rich Low_complexity Low_complexity 1 22 0 6314 125 8 11 chr11 7561643 7563009 -143220544 - L1PA15 LINE L1 -4 6161 4795 3378 210 82 19 chr11 7563404 7564284 -143219269 - L1ME1 LINE L1 -17 6218 5252 1982 146 0 3 chr11 7564284 7564585 -143218968 - AluJb SINE Alu -12 300 1 3378 210 82 19 chr11 7564585 7564809 -143218744 - L1ME1 LINE L1 -983 5252 5044 301 262 37 19 chr11 7564914 7565021 -143218532 - HAL1b LINE L1 -49 1299 1191 699 83 4 78 chr11 7565125 7565392 -143218161 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 7565457 7565478 -143218075 + AT_rich Low_complexity Low_complexity 1 21 0 373 283 117 33 chr11 7566259 7566763 -143216790 - L1ME1 LINE L1 -1227 4988 4437 405 293 40 30 chr11 7566868 7567066 -143216487 - L1ME1 LINE L1 -1924 4291 4092 313 344 83 6 chr11 7567089 7567246 -143216307 - L1ME1 LINE L1 -2275 3940 3772 931 133 7 0 chr11 7567249 7567384 -143216169 + AluJb SINE Alu 6 141 -171 43 20 0 0 chr11 7567406 7567456 -143216097 + AT_rich Low_complexity Low_complexity 1 50 0 232 222 0 28 chr11 7567500 7567572 -143215981 + (TA)n Simple_repeat Simple_repeat 2 71 0 1741 99 4 0 chr11 7567661 7567894 -143215659 - L1PA11 LINE L1 -2 6172 5939 26 0 0 0 chr11 7568179 7568205 -143215348 + AT_rich Low_complexity Low_complexity 1 26 0 489 195 0 0 chr11 7568271 7568353 -143215200 + Tigger4(Zombi) DNA MER2_type 1 82 -2649 3728 94 16 0 chr11 7568358 7568867 -143214686 + Tigger4(Zombi) DNA MER2_type 2212 2728 -3 28 0 0 0 chr11 7568935 7568963 -143214590 + AT_rich Low_complexity Low_complexity 1 28 0 684 228 115 48 chr11 7569085 7569422 -143214131 + MLT1I LTR MaLR 50 435 -11 242 250 17 0 chr11 7569440 7569500 -143214053 - L1ME1 LINE L1 -3129 3086 3026 300 204 0 112 chr11 7569532 7569630 -143213923 - L1MC4 LINE L1 -1339 6703 6617 * 301 202 0 101 chr11 7569542 7569641 -143213912 + L1MC4 LINE L1 6614 6702 -1340 218 182 39 13 chr11 7569648 7569725 -143213828 + (TA)n Simple_repeat Simple_repeat 1 79 0 423 159 47 29 chr11 7569749 7569919 -143213634 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 455 33 16 0 chr11 7570103 7570164 -143213389 + (TG)n Simple_repeat Simple_repeat 2 63 0 305 219 47 0 chr11 7571203 7571267 -143212286 + MIR3 SINE MIR 112 178 -30 268 241 23 69 chr11 7571321 7571383 -143212170 + MIR3 SINE MIR 111 169 -39 2429 135 25 3 chr11 7571383 7571739 -143211814 + THE1B LTR MaLR 1 364 0 268 241 23 69 chr11 7571739 7571763 -143211790 + MIR3 SINE MIR 169 193 -15 216 182 0 0 chr11 7571813 7571857 -143211696 + (CA)n Simple_repeat Simple_repeat 2 45 0 384 271 146 7 chr11 7573806 7573957 -143209596 - MIR3 SINE MIR -19 189 18 5450 171 58 13 chr11 7574923 7576892 -143206661 - L1MB8 LINE L1 -13 6165 4109 1012 276 116 10 chr11 7576935 7577454 -143206099 - L1ME1 LINE L1 -4929 1467 894 3056 224 49 60 chr11 7577474 7578284 -143205269 - MER21B LTR ERV1 -51 812 12 2017 262 100 20 chr11 7578300 7578461 -143205092 - L1ME1 LINE L1 -5523 873 726 1384 127 103 0 chr11 7578461 7578674 -143204879 + MER46A DNA MER2_type 1 235 -1 2017 262 100 20 chr11 7578674 7579301 -143204252 - L1ME1 LINE L1 -5670 726 22 592 337 128 36 chr11 7579312 7579756 -143203797 + L2 LINE L2 2286 2687 -585 1496 129 44 22 chr11 7579756 7579981 -143203572 + MER30 DNA MER1_type 1 230 0 592 337 128 36 chr11 7579981 7580443 -143203110 + L2 LINE L2 2687 3272 0 450 218 53 53 chr11 7580910 7581043 -143202510 + L2 LINE L2 3179 3311 -2 * 796 247 38 0 chr11 7581041 7581227 -143202326 - MIR SINE MIR 0 262 70 201 74 0 0 chr11 7581250 7581277 -143202276 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1594 201 0 28 chr11 7581331 7581650 -143201903 - AluJo SINE Alu -2 310 1 350 315 117 19 chr11 7581835 7582048 -143201505 - MIR SINE MIR -26 236 3 527 276 30 0 chr11 7582264 7582398 -143201155 + MER5A DNA MER1_type 52 189 0 366 85 0 0 chr11 7582507 7582566 -143200987 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 22 35 0 0 chr11 7582611 7582640 -143200913 + AT_rich Low_complexity Low_complexity 1 29 0 452 229 34 8 chr11 7582666 7582784 -143200769 - L1ME4a LINE L1 -24 6097 5977 * 2813 229 52 22 chr11 7582782 7583547 -143200006 - L1ME3A LINE L1 0 6170 5383 877 280 106 16 chr11 7584220 7584606 -143198947 - L1ME4a LINE L1 -206 5915 5495 469 285 92 88 chr11 7584760 7585426 -143198127 - L1ME4a LINE L1 -1113 5033 4362 2430 71 0 19 chr11 7585426 7585735 -143197818 - AluY SINE Alu -8 303 1 469 285 92 88 chr11 7585735 7585985 -143197568 - L1ME4a LINE L1 -1784 4362 4114 320 345 16 51 chr11 7586015 7586270 -143197283 - L1ME4a LINE L1 -2168 3978 3733 462 313 33 0 chr11 7587112 7587262 -143196291 + MIR SINE MIR 21 175 -87 552 253 39 52 chr11 7588959 7589113 -143194440 + MER91A DNA MER1_type 4 155 -41 1071 250 68 78 chr11 7589213 7589761 -143193792 - MLT1H LTR MaLR 0 549 8 309 185 0 0 chr11 7591749 7591803 -143191750 + L2 LINE L2 3217 3270 -2 216 321 108 20 chr11 7592038 7592209 -143191344 + MIR SINE MIR 30 212 -50 23 0 0 0 chr11 7592873 7592896 -143190657 + AT_rich Low_complexity Low_complexity 1 23 0 574 238 76 43 chr11 7593766 7593899 -143189654 + MIR SINE MIR 60 202 -60 423 205 0 0 chr11 7593899 7593977 -143189576 + MER116 DNA Mariner 1 78 -2 574 238 76 43 chr11 7593977 7594028 -143189525 + MIR SINE MIR 202 250 -12 2770 20 0 0 chr11 7594364 7594669 -143188884 - AluY SINE Alu -6 305 1 288 65 78 0 chr11 7594767 7594844 -143188709 + (TA)n Simple_repeat Simple_repeat 2 84 0 197 318 11 57 chr11 7594947 7595035 -143188518 - L3 LINE CR1 -257 1320 1237 * 207 338 48 48 chr11 7595011 7595156 -143188397 - L2 LINE L2 -6 3266 3122 1385 189 18 49 chr11 7595284 7595569 -143187984 + AluJo SINE Alu 3 278 -34 195 69 0 0 chr11 7595573 7595602 -143187951 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4745 167 48 57 chr11 7595651 7596561 -143186992 - L1MB8 LINE L1 0 6178 5261 1818 176 0 19 chr11 7596561 7596873 -143186680 - AluJo SINE Alu -5 307 2 4745 167 48 57 chr11 7596873 7598266 -143185287 - L1MB8 LINE L1 -917 5261 3804 447 19 0 0 chr11 7598297 7598349 -143185204 + (TG)n Simple_repeat Simple_repeat 2 53 0 2312 122 0 0 chr11 7598422 7598734 -143184819 + AluSx SINE Alu 1 312 0 411 306 95 12 chr11 7598766 7599008 -143184545 - L2 LINE L2 -459 2855 2594 354 287 70 60 chr11 7599040 7599340 -143184213 - MLT1K LTR MaLR -6 582 280 433 149 0 0 chr11 7599557 7599624 -143183929 - AluJ/FLAM SINE Alu -223 89 23 3424 57 94 0 chr11 7600027 7600452 -143183101 + MER4C LTR ERV1 1 465 0 371 327 148 30 chr11 7600475 7600974 -143182579 - L3 LINE CR1 -320 1257 700 1276 182 36 61 chr11 7600974 7601303 -143182250 - L1MC5 LINE L1 -30 7931 7611 1895 126 0 11 chr11 7601398 7601661 -143181892 - AluSq SINE Alu -53 260 1 1164 246 98 37 chr11 7601819 7602339 -143181214 + L2 LINE L2 2632 3213 -100 2410 88 3 0 chr11 7602339 7602646 -143180907 + AluSg SINE Alu 1 308 -2 1164 246 98 37 chr11 7602646 7602753 -143180800 + L2 LINE L2 3213 3312 -1 319 243 81 0 chr11 7602847 7602958 -143180595 + L1ME4a LINE L1 5764 5883 -238 1692 41 15 0 chr11 7602995 7603191 -143180362 + L1PA5 LINE L1 5956 6154 0 339 248 128 8 chr11 7603200 7603317 -143180236 + L1ME4a LINE L1 5990 6120 -1 2118 122 26 0 chr11 7604062 7604366 -143179187 + AluSx SINE Alu 1 312 0 338 183 0 12 chr11 7604892 7604974 -143178579 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 3530 174 17 2 chr11 7605532 7606131 -143177422 - MER90 LTR ERV1 -6 608 1 388 292 124 52 chr11 7606589 7606822 -143176731 - MIR SINE MIR -6 256 7 228 284 0 54 chr11 7606859 7606933 -143176620 - L2 LINE L2 -559 2755 2686 2361 94 7 0 chr11 7607503 7607802 -143175751 - AluSx SINE Alu -11 301 1 1667 168 11 11 chr11 7607855 7608135 -143175418 - AluJo SINE Alu -7 305 26 492 308 0 0 chr11 7608383 7608529 -143175024 + L1ME3A LINE L1 5713 5858 -312 520 123 0 105 chr11 7608598 7608712 -143174841 - L1MB3 LINE L1 -18 6165 6064 248 318 182 20 chr11 7609211 7609607 -143173946 - L2 LINE L2 -862 2452 1993 290 311 38 57 chr11 7609758 7609864 -143173689 + L2 LINE L2 3155 3258 -14 311 274 77 17 chr11 7610167 7610284 -143173269 + L3 LINE CR1 1358 1481 -96 4630 158 38 42 chr11 7610337 7611164 -143172389 - L1MB8 LINE L1 -6 6172 5343 2203 113 0 10 chr11 7611164 7611466 -143172087 - AluSx SINE Alu -13 299 1 4630 158 38 42 chr11 7611466 7611498 -143172055 - L1MB8 LINE L1 -835 5343 5312 2708 26 3 3 chr11 7611498 7611807 -143171746 - AluY SINE Alu -2 309 1 4630 158 38 42 chr11 7611807 7612212 -143171341 - L1MB8 LINE L1 -866 5312 4897 201 296 0 0 chr11 7612213 7612257 -143171296 + L3 LINE CR1 1531 1574 -3 4162 145 90 9 chr11 7612804 7613468 -143170085 - MER72 LTR ERV1 0 722 5 1498 155 7 58 chr11 7613887 7614197 -143169356 - AluY SINE Alu -1 310 17 1152 242 37 0 chr11 7664207 7664480 -143119073 - L1ME LINE L1 -362 5808 5526 * 5111 138 9 1 chr11 7664479 7665275 -143118278 + L1PA16 LINE L1 5364 6165 -1 261 180 0 0 chr11 7665274 7665324 -143118229 - L1ME LINE L1 -625 5539 5487 * 1241 238 53 3 chr11 7665449 7665752 -143117801 - L1ME2 LINE L1 -268 6691 6374 835 191 0 7 chr11 7665764 7665911 -143117642 + FRAM SINE Alu 6 151 -25 271 191 0 0 chr11 7665924 7665971 -143117582 - L1ME2 LINE L1 -595 6364 6318 1627 214 28 87 chr11 7666010 7666576 -143116977 + MER34 LTR ERV1 10 542 0 1498 134 46 21 chr11 7667356 7667639 -143115914 - MER4-int LTR ERV1 -1455 5143 4854 * 8300 112 53 42 chr11 7667631 7668189 -143115364 + LTR8A-int LTR ERV1 5120 5670 -928 3877 164 51 19 chr11 7668189 7668891 -143114662 + LTR8A LTR ERV1 1 725 -2 8300 112 53 42 chr11 7668891 7669793 -143113760 + LTR8A-int LTR ERV1 5670 6596 -2 3776 114 23 46 chr11 7669801 7670415 -143113138 + MER4A LTR ERV1 1 600 0 440 342 55 29 chr11 7671510 7671998 -143111555 + L2 LINE L2 1334 1834 -1480 697 245 185 79 chr11 7672010 7672654 -143110899 - HAL1 LINE L1 0 2507 1780 2196 145 0 0 chr11 7672654 7672965 -143110588 - AluSx SINE Alu -1 311 1 697 245 185 79 chr11 7672965 7673029 -143110524 - HAL1 LINE L1 -727 1780 1724 2035 142 0 0 chr11 7674651 7674954 -143108599 + AluSx SINE Alu 1 303 -9 221 215 0 13 chr11 7675019 7675098 -143108455 + GA-rich Low_complexity Low_complexity 1 78 0 2640 42 0 3 chr11 7676337 7676644 -143106909 + AluY SINE Alu 1 306 -5 2536 174 22 0 chr11 7676654 7677067 -143106486 - MSTB LTR MaLR -4 422 1 243 291 0 23 chr11 7677312 7677398 -143106155 + (CA)n Simple_repeat Simple_repeat 1 84 0 6078 168 40 27 chr11 7679210 7680062 -143103491 + L1MC2 LINE L1 4407 5247 -1097 2011 92 0 0 chr11 7680062 7680313 -143103240 + AluSc SINE Alu 40 290 -19 6078 168 40 27 chr11 7680313 7681276 -143102277 + L1MC2 LINE L1 5247 6261 -83 1252 147 20 33 chr11 7681276 7681521 -143102032 - L1MA10 LINE L1 -7 6327 6086 6078 168 40 27 chr11 7681521 7681585 -143101968 + L1MC2 LINE L1 6261 6323 -21 315 80 0 0 chr11 7681576 7681626 -143101927 + L1MC3 LINE L1 7575 7624 -161 * 1752 266 103 22 chr11 7681658 7682691 -143100862 - L1ME2 LINE L1 -877 6064 4949 2309 93 0 3 chr11 7682753 7683044 -143100509 - AluSq SINE Alu -21 292 3 511 263 158 7 chr11 7683761 7683913 -143099640 + MER5A DNA MER1_type 9 183 -6 2606 59 0 0 chr11 7683945 7684250 -143099303 - AluY SINE Alu -6 305 1 443 333 31 26 chr11 7684287 7684479 -143099074 - L1ME2 LINE L1 -5408 1015 823 41 72 0 0 chr11 7684627 7684710 -143098843 + AT_rich Low_complexity Low_complexity 1 83 0 417 117 130 0 chr11 7684710 7684787 -143098766 - L1MB2 LINE L1 -7 6164 6078 3147 198 40 60 chr11 7684794 7684853 -143098700 - L1MC4a LINE L1 0 7808 7749 761 227 0 0 chr11 7684853 7684985 -143098568 + FLAM_A SINE Alu 2 133 0 3147 198 40 60 chr11 7684985 7685729 -143097824 - L1MC4a LINE L1 -59 7749 7021 867 252 31 24 chr11 7685735 7685989 -143097564 - L1ME3A LINE L1 -5 6165 5910 260 277 264 34 chr11 7686218 7686366 -143097187 - L1ME3A LINE L1 -2073 5735 5554 184 333 46 11 chr11 7687501 7687588 -143095965 - MIR3 SINE MIR -5 203 114 542 264 149 27 chr11 7687770 7688115 -143095438 - LTR16A LTR ERVL -4 446 21 264 75 0 0 chr11 7688516 7688556 -143094997 - L1MA9 LINE L1 -3 6309 6270 300 269 239 13 chr11 7688557 7688791 -143094762 + L2 LINE L2 2275 2561 -753 26 0 0 0 chr11 7689353 7689379 -143094174 + AT_rich Low_complexity Low_complexity 1 26 0 10047 167 15 98 chr11 7689385 7692567 -143090986 + L1M2a LINE L1 6 2930 -4238 277 326 30 52 chr11 7693598 7693831 -143089722 + MLT1K LTR MaLR 316 543 -45 261 243 68 14 chr11 7694803 7694877 -143088676 - MIR SINE MIR -78 130 53 197 273 189 35 chr11 7696136 7696279 -143087274 - MIR3 SINE MIR -18 190 26 413 209 51 10 chr11 7696279 7696434 -143087119 - LTR36 LTR ERV1 -1 610 395 256 287 34 72 chr11 7697799 7697916 -143085637 - L1MC/D LINE L1 -1972 5836 5716 2350 90 10 0 chr11 7697916 7698216 -143085337 - AluSp SINE Alu -10 303 1 256 287 34 72 chr11 7698216 7698391 -143085162 - L1MC/D LINE L1 -2092 5716 5555 665 155 14 27 chr11 7698742 7698890 -143084663 + MER4C LTR ERV1 1 146 -319 327 290 25 49 chr11 7699310 7699472 -143084081 - HERVL LTR ERVL -1460 4194 4037 742 321 36 24 chr11 7699844 7700180 -143083373 - HERVL LTR ERVL -4335 661 322 1969 178 23 25 chr11 7700214 7700607 -143082946 - MSTB1 LTR MaLR 0 432 41 6606 68 0 0 chr11 7700607 7701637 -143081916 - L1PA5 LINE L1 -1 6153 5101 10090 81 9 1 chr11 7701637 7703075 -143080478 + L1PA5 LINE L1 3651 5100 -1046 30 0 0 0 chr11 7703284 7703314 -143080239 + AT_rich Low_complexity Low_complexity 1 30 0 325 306 47 80 chr11 7703432 7703707 -143079846 - L1M4 LINE L1 -3366 2780 2515 254 259 63 28 chr11 7703783 7703926 -143079627 - L1ME3A LINE L1 0 6170 6023 364 264 47 39 chr11 7706121 7706250 -143077303 - L2 LINE L2 0 3313 3184 291 114 0 0 chr11 7706253 7706297 -143077256 + (TA)n Simple_repeat Simple_repeat 1 44 0 237 173 53 0 chr11 7706310 7706385 -143077168 + (TA)n Simple_repeat Simple_repeat 2 80 0 363 167 0 0 chr11 7706467 7706533 -143077020 + (TA)n Simple_repeat Simple_repeat 1 66 0 477 331 94 20 chr11 7708664 7708963 -143074590 - L1ME3A LINE L1 -253 5868 5548 2525 178 9 38 chr11 7709860 7710412 -143073141 - LTR27 LTR ERV1 -98 538 3 441 289 41 84 chr11 7711244 7711660 -143071893 + MLT1J LTR MaLR 109 506 -5 24 0 0 0 chr11 7711670 7711694 -143071859 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 7711818 7711842 -143071711 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 7711907 7711930 -143071623 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 7712532 7712555 -143070998 + AT_rich Low_complexity Low_complexity 1 23 0 22952 35 0 0 chr11 7712557 7716134 -143067419 + L1PA2 LINE L1 2572 6154 -1 334 267 9 0 chr11 7716199 7716304 -143067249 - L1ME LINE L1 -461 5660 5555 32 91 0 0 chr11 7716429 7716517 -143067036 + AT_rich Low_complexity Low_complexity 1 88 0 1789 155 3 32 chr11 7716960 7717270 -143066283 + AluJb SINE Alu 1 301 -11 4747 142 55 16 chr11 7717298 7718165 -143065388 - MER4D LTR ERV1 0 903 3 606 215 35 14 chr11 7718295 7718439 -143065114 + MER93b LTR ERV1 1 147 -226 3270 59 25 7 chr11 7718491 7718931 -143064622 + LTR7 LTR ERV1 1 448 -2 18732 99 69 14 chr11 7718933 7722051 -143061502 + HERVH LTR ERV1 1 3290 -4423 3084 124 8 6 chr11 7722041 7722542 -143061011 + HERVH LTR ERV1 3492 3993 -3720 * 4121 139 1 3 chr11 7722544 7723207 -143060346 + HERVH LTR ERV1 4488 5149 -2564 1325 124 18 9 chr11 7723208 7723426 -143060127 + HERVH LTR ERV1 5600 5819 -1894 2393 75 48 3 chr11 7723426 7723799 -143059754 + HERVH LTR ERV1 7324 7713 0 3480 58 0 7 chr11 7723799 7724250 -143059303 + LTR7 LTR ERV1 1 448 -2 453 215 15 15 chr11 7724250 7724380 -143059173 + MER93b LTR ERV1 244 373 0 770 198 80 0 chr11 7724917 7725079 -143058474 - MER5A DNA MER1_type -2 187 13 312 192 0 90 chr11 7725122 7725200 -143058353 + MIR SINE MIR 183 253 -9 486 136 62 0 chr11 7725639 7725720 -143057833 + LTR54B LTR ERV1 1 86 -412 3145 121 0 0 chr11 7725720 7726198 -143057355 + MER41B LTR ERV1 1 478 -157 1264 188 88 40 chr11 7726195 7726764 -143056789 - LTR48B LTR ERV1 -21 614 1 * 324 192 0 0 chr11 7726764 7726835 -143056718 + MER57A LTR ERV1 331 401 -2 2141 129 7 0 chr11 7726917 7727227 -143056326 + AluSq SINE Alu 1 312 -1 2401 130 35 21 chr11 7727712 7728143 -143055410 - LTR23 LTR ERV1 0 437 1 5328 164 31 22 chr11 7728240 7729626 -143053927 - LTR23-int LTR ERV1 -101 5699 4415 2887 43 13 5 chr11 7729793 7730169 -143053384 + LTR10C LTR ERV1 1 379 -212 2133 143 35 20 chr11 7730172 7730578 -143052975 + LTR3 LTR ERVK 5 416 -16 23955 132 20 13 chr11 7730640 7734894 -143048659 + HERVK3 LTR ERVK 2 4226 -1719 1506 130 41 0 chr11 7734894 7735140 -143048413 + L1PA15 LINE L1 5910 6165 0 23955 132 20 13 chr11 7735140 7735162 -143048391 + HERVK3 LTR ERVK 4226 4246 -1699 216 0 0 0 chr11 7735162 7735186 -143048367 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23955 132 20 13 chr11 7735186 7735875 -143047678 + HERVK3 LTR ERVK 4246 5238 -707 2311 84 0 3 chr11 7735875 7736171 -143047382 - AluY SINE Alu -16 295 1 23955 132 20 13 chr11 7736171 7736540 -143047013 + HERVK3 LTR ERVK 5238 5603 -342 653 106 0 0 chr11 7736536 7736630 -143046923 + HERVK3 LTR ERVK 7150 7243 0 * 2137 165 14 17 chr11 7736634 7737047 -143046506 + LTR3 LTR ERVK 5 416 -16 1688 65 9 0 chr11 7737069 7737286 -143046267 + LTR10C LTR ERV1 373 591 0 1189 175 37 20 chr11 7737325 7737571 -143045982 + MLT1B LTR MaLR 3 252 -138 521 195 65 0 chr11 7737566 7737689 -143045864 + LTR23 LTR ERV1 11 141 -296 * 2500 72 0 3 chr11 7737783 7738088 -143045465 - AluY SINE Alu -7 304 1 668 209 36 0 chr11 7738730 7738926 -143044627 - L1ME3A LINE L1 -219 5951 5749 799 114 15 0 chr11 7739021 7739152 -143044401 + LTR23 LTR ERV1 167 299 -138 749 189 0 0 chr11 7739160 7739287 -143044266 + FLAM_C SINE Alu 2 128 -5 614 196 0 29 chr11 7739304 7739442 -143044111 + LTR23 LTR ERV1 293 426 -11 632 193 21 21 chr11 7739548 7739688 -143043865 + LTR23 LTR ERV1 298 437 0 793 161 35 0 chr11 7739688 7739831 -143043722 + MLT1B LTR MaLR 240 387 -3 1845 171 34 0 chr11 7739993 7740286 -143043267 - AluJo SINE Alu -9 303 1 1019 189 137 107 chr11 7740545 7741041 -143042512 + MER67D LTR ERV1 1 511 -3 681 224 63 40 chr11 7741093 7741316 -143042237 + MER110A LTR ERV1 17 244 -224 261 318 56 19 chr11 7741643 7741750 -143041803 - MLT-int LTR MaLR -1219 516 406 345 47 0 0 chr11 7742086 7742129 -143041424 + (TG)n Simple_repeat Simple_repeat 2 44 0 476 280 109 71 chr11 7742211 7742820 -143040733 - L2 LINE L2 -5 3308 2653 861 125 0 0 chr11 7743345 7743465 -143040088 + FLAM_C SINE Alu 6 125 -18 439 282 213 23 chr11 7743465 7743681 -143039872 - MIR SINE MIR -5 257 1 1911 194 94 2 chr11 7744507 7744976 -143038577 + Charlie1b DNA MER1_type 6 517 -6 504 276 115 21 chr11 7746187 7746403 -143037150 - MIR SINE MIR -4 258 30 320 351 98 65 chr11 7746446 7746639 -143036914 - L2 LINE L2 -5 3267 3057 470 46 15 0 chr11 7746639 7746704 -143036849 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 320 351 98 65 chr11 7746704 7746835 -143036718 - L2 LINE L2 -215 3057 2932 460 86 57 0 chr11 7746936 7747006 -143036547 + U6 snRNA snRNA 1 74 -33 354 356 86 29 chr11 7747265 7747543 -143036010 - L2 LINE L2 -565 2749 2456 24 100 0 0 chr11 7747666 7747746 -143035807 + AT_rich Low_complexity Low_complexity 1 80 0 2277 128 0 0 chr11 7747796 7748108 -143035445 + AluSx SINE Alu 1 312 0 1912 268 36 11 chr11 7748442 7749241 -143034312 + L1M2 LINE L1 16 920 -5929 6890 121 9 6 chr11 7749341 7750697 -143032856 - L1P2 LINE L1 -571 5583 4226 5432 153 34 26 chr11 7750797 7751927 -143031626 - HERVH LTR ERV1 -6156 1557 420 1034 246 84 8 chr11 7752027 7752385 -143031168 - L1MDa LINE L1 -4653 1887 1503 981 167 0 32 chr11 7752385 7752571 -143030982 + MER46A DNA MER2_type 1 180 -56 589 188 57 17 chr11 7752575 7752751 -143030802 - L1 LINE L1 -1537 4609 4427 5784 157 41 61 chr11 7752762 7754104 -143029449 + L1P LINE L1 3014 4276 -1870 7796 16 0 0 chr11 7754104 7755182 -143028371 - L1PA3 LINE L1 0 6155 5078 5784 157 41 61 chr11 7755182 7755923 -143027630 + L1P LINE L1 4276 5030 -1116 243 0 0 0 chr11 7755943 7755970 -143027583 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2051 117 25 0 chr11 7755972 7756246 -143027307 - AluSx SINE Alu -31 281 1 1238 199 4 0 chr11 7756246 7756513 -143027040 - L1 LINE L1 -922 5288 5021 * 2095 225 52 2 chr11 7756511 7757120 -143026433 - L1 LINE L1 -4543 1598 959 224 30 30 0 chr11 7757447 7757480 -143026073 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 706 300 38 54 chr11 7757577 7758023 -143025530 - LTR16A1 LTR ERVL 0 457 19 326 264 27 18 chr11 7760812 7760922 -143022631 + MIR SINE MIR 74 184 -78 186 359 34 60 chr11 7761261 7761495 -143022058 - L2 LINE L2 -902 2412 2185 254 361 23 23 chr11 7761609 7761739 -143021814 + L2 LINE L2 2921 3050 -263 251 360 75 6 chr11 7761875 7762036 -143021517 + MIR SINE MIR 86 257 -5 216 135 0 0 chr11 7764476 7764513 -143019040 + (TG)n Simple_repeat Simple_repeat 2 38 0 504 176 0 0 chr11 7764620 7764722 -143018831 + GA-rich Low_complexity Low_complexity 3 104 0 401 279 53 37 chr11 7764758 7764948 -143018605 + L1M4 LINE L1 3257 3449 -2697 3459 228 60 44 chr11 7765273 7765988 -143017565 - L1M4 LINE L1 -717 5461 4758 2049 130 11 0 chr11 7765988 7766272 -143017281 - AluSx SINE Alu -25 287 1 3459 228 60 44 chr11 7766272 7766988 -143016565 - L1M4 LINE L1 -1420 4758 4012 4799 179 29 13 chr11 7767004 7768934 -143014619 + L1PB4 LINE L1 4193 6151 -5 1145 270 97 6 chr11 7768950 7769435 -143014118 + L1 LINE L1 2315 2843 -3303 40012 32 30 2 chr11 7769446 7775429 -143008124 + L1PA2 LINE L1 1 6154 -1 6674 204 71 32 chr11 7775441 7776293 -143007260 + L1 LINE L1 2839 3656 -2490 2347 109 0 0 chr11 7776293 7776595 -143006958 + AluSq SINE Alu 1 302 -11 6674 204 71 32 chr11 7776595 7776711 -143006842 + L1 LINE L1 3656 3766 -2380 1763 174 10 10 chr11 7776711 7777021 -143006532 + AluJo SINE Alu 1 310 -2 6674 204 71 32 chr11 7777021 7778098 -143005455 + L1 LINE L1 3766 4965 -1181 409 309 65 29 chr11 7779070 7779305 -143004248 - MIR SINE MIR -17 245 3 204 331 71 47 chr11 7780162 7780289 -143003264 - L2 LINE L2 -829 2485 2356 2122 107 3 13 chr11 7780292 7780592 -143002961 - AluSx SINE Alu -15 297 1 2047 134 3 19 chr11 7782051 7782358 -143001195 - AluSx SINE Alu -10 302 1 2244 182 8 0 chr11 7784428 7784830 -142998723 + MLT1C LTR MaLR 1 405 -62 2005 170 28 19 chr11 7784982 7785486 -142998067 + MLT2A2 LTR ERVL 1 508 -46 6763 36 21 0 chr11 7785486 7786354 -142997199 + L1P LINE L1 3720 4605 -1541 547 282 81 33 chr11 7786373 7786652 -142996901 - L1MEc LINE L1 -4772 1347 1020 246 266 79 14 chr11 7786663 7786802 -142996751 - L1MEc LINE L1 -5099 971 824 231 333 0 0 chr11 7787626 7787686 -142995867 - L2 LINE L2 -257 3056 2997 319 224 0 0 chr11 7787769 7787827 -142995726 + L2 LINE L2 3244 3301 -12 4316 71 0 17 chr11 7787969 7788546 -142995007 + L1PA8 LINE L1 5603 6169 -3 345 238 153 0 chr11 7788593 7788753 -142994800 - MER20B DNA MER1_type -4 215 31 2102 99 34 0 chr11 7789360 7789653 -142993900 + AluY SINE Alu 1 303 -8 5712 135 113 5 chr11 7790023 7790638 -142992915 + Tigger3b DNA MER2_type 1 548 -2480 1689 168 7 11 chr11 7790638 7790912 -142992641 + AluJb SINE Alu 1 273 -39 5712 135 113 5 chr11 7790912 7791407 -142992146 + Tigger3b DNA MER2_type 548 1231 0 849 281 165 5 chr11 7792372 7792803 -142990750 + LTR33 LTR ERVL 1 500 -21 40 101 0 0 chr11 7792870 7793008 -142990545 + AT_rich Low_complexity Low_complexity 1 138 0 183 100 0 0 chr11 7793081 7793111 -142990442 + (TA)n Simple_repeat Simple_repeat 2 31 0 706 107 157 112 chr11 7793111 7793204 -142990349 + Tigger3(Golem) DNA MER2_type 2397 2484 -545 1784 167 0 11 chr11 7793204 7793480 -142990073 + AluJb SINE Alu 1 273 -39 706 107 157 112 chr11 7793480 7793628 -142989925 + Tigger3(Golem) DNA MER2_type 2484 2649 -380 1041 123 0 0 chr11 7793628 7793807 -142989746 + (TA)n Simple_repeat Simple_repeat 2 180 0 370 341 54 48 chr11 7794226 7794477 -142989076 + L2 LINE L2 1959 2214 -1100 1140 200 82 53 chr11 7794477 7794832 -142988721 - MLT1A1 LTR MaLR 0 365 1 370 341 54 48 chr11 7794832 7794911 -142988642 + L2 LINE L2 2214 2291 -1023 2339 78 14 0 chr11 7795439 7795609 -142987944 - AluY SINE Alu -12 299 122 333 0 0 0 chr11 7795609 7795646 -142987907 + (TG)n Simple_repeat Simple_repeat 2 38 0 2339 78 14 0 chr11 7795646 7795770 -142987783 - AluY SINE Alu -189 122 1 3103 218 32 5 chr11 7795912 7796664 -142986889 - L1MB8 LINE L1 -1 6177 5406 1152 307 50 12 chr11 7797308 7797790 -142985763 + MLT1H1 LTR MaLR 1 500 -55 498 342 58 38 chr11 7797790 7798378 -142985175 + L2 LINE L2 2665 3313 0 31422 60 2 12 chr11 7799314 7803617 -142979936 + L1PA5 LINE L1 258 4517 -1629 7678 20 0 0 chr11 7803617 7804674 -142978879 + L1PA3 LINE L1 5129 6184 0 7010 42 33 0 chr11 7804675 7805444 -142978109 + L1PA5 LINE L1 4510 5252 -902 200 59 29 0 chr11 7805444 7805478 -142978075 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 7010 42 33 0 chr11 7805478 7806318 -142977235 + L1PA5 LINE L1 5252 6149 -5 1565 68 10 14 chr11 7806686 7806893 -142976660 + AluY SINE Alu 106 311 0 252 306 217 0 chr11 7807209 7807366 -142976187 + MIR SINE MIR 1 191 -71 788 282 28 5 chr11 7807369 7807582 -142975971 + MIR SINE MIR 20 237 -25 195 293 17 0 chr11 7807553 7807611 -142975942 + L2 LINE L2 3213 3271 -1 * 23 0 0 0 chr11 7807732 7807755 -142975798 + AT_rich Low_complexity Low_complexity 1 23 0 295 280 90 70 chr11 7809670 7809870 -142973683 + L2 LINE L2 2926 3129 -143 25 31 0 0 chr11 7810150 7810182 -142973371 + AT_rich Low_complexity Low_complexity 1 32 0 231 153 68 0 chr11 7810348 7810407 -142973146 - L1MA7 LINE L1 0 6291 6229 4792 160 10 29 chr11 7810407 7811270 -142972283 + LTR57-int LTR ERVL 4495 5341 -2 361 60 20 0 chr11 7811272 7811322 -142972231 + LTR57 LTR ERVL 1 51 -360 1375 221 56 20 chr11 7811323 7811821 -142971732 + L1ME1 LINE L1 4859 5374 -772 543 139 16 16 chr11 7811820 7811949 -142971604 + L1MDa LINE L1 2424 2552 -3988 * 37 81 0 0 chr11 7811979 7812065 -142971488 + AT_rich Low_complexity Low_complexity 1 86 0 259 159 32 0 chr11 7812065 7812128 -142971425 + L1MDa LINE L1 2488 2552 -3988 2434 240 47 6 chr11 7812197 7812917 -142970636 + L1ME1 LINE L1 5417 6166 0 21 0 0 0 chr11 7814026 7814047 -142969506 + AT_rich Low_complexity Low_complexity 1 21 0 319 325 114 42 chr11 7814331 7814568 -142968985 - L3 LINE CR1 -318 1259 1006 332 316 107 25 chr11 7814594 7814790 -142968763 + MIR SINE MIR 21 232 -30 5406 203 5 5 chr11 7815188 7816273 -142967280 + L1PA12 LINE L1 610 1707 -5874 234 0 0 0 chr11 7816276 7816302 -142967251 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9987 200 11 11 chr11 7816307 7818623 -142964930 + L1PA12 LINE L1 2454 4770 -2814 2102 202 259 18 chr11 7819425 7820270 -142963283 + L1MA9 LINE L1 3324 4372 -1774 1994 138 17 3 chr11 7820298 7820588 -142962965 + AluSg SINE Alu 6 299 -11 2271 123 0 0 chr11 7820591 7820901 -142962652 + AluSg SINE Alu 1 310 0 642 222 31 43 chr11 7820901 7821150 -142962403 + L1MA4 LINE L1 6060 6295 -5 593 210 13 49 chr11 7821154 7821222 -142962331 + L1MA9 LINE L1 4356 4425 -1721 1947 159 7 7 chr11 7821222 7821523 -142962030 - AluSx SINE Alu -11 301 1 593 210 13 49 chr11 7821523 7821756 -142961797 + L1MA9 LINE L1 4425 4808 -1338 * 3075 147 16 96 chr11 7821747 7822488 -142961065 + L1MB3 LINE L1 5416 6097 -86 1177 126 16 16 chr11 7822488 7822662 -142960891 - AluSp SINE Alu -1 312 136 438 114 34 0 chr11 7822662 7822750 -142960803 + L1MB2 LINE L1 6078 6168 -3 2151 203 30 59 chr11 7822774 7823379 -142960174 + L1MA9 LINE L1 4794 5415 -897 16118 49 6 2 chr11 7823379 7826158 -142957395 + L1PA5 LINE L1 3375 6154 0 2151 203 30 59 chr11 7826158 7826485 -142957068 + L1MA9 LINE L1 5415 5750 -562 186 71 0 0 chr11 7826485 7826513 -142957040 + (TG)n Simple_repeat Simple_repeat 2 29 0 2151 203 30 59 chr11 7826513 7826982 -142956571 + L1MA9 LINE L1 5750 6128 -184 2073 125 6 6 chr11 7826982 7827317 -142956236 - L1MA3 LINE L1 0 6305 5971 2151 203 30 59 chr11 7827317 7827464 -142956089 + L1MA9 LINE L1 6128 6278 -34 2294 215 70 25 chr11 7827482 7828278 -142955275 - L1MDa LINE L1 -4692 1848 1017 4292 161 29 29 chr11 7828769 7829552 -142954001 + LTR39 LTR ERV1 1 783 0 788 310 20 55 chr11 7829577 7829977 -142953576 - L1MDa LINE L1 -6138 402 17 278 306 34 41 chr11 7830235 7830382 -142953171 + MIR SINE MIR 100 245 -17 22 70 0 0 chr11 7832362 7832405 -142951148 + AT_rich Low_complexity Low_complexity 1 43 0 573 250 87 23 chr11 7832418 7832590 -142950963 - MIR SINE MIR -74 188 6 1693 192 39 0 chr11 7833233 7833514 -142950039 + AluJb SINE Alu 1 292 -20 1913 138 4 4 chr11 7833522 7833798 -142949755 + AluSx SINE Alu 1 276 -36 2169 105 10 0 chr11 7834136 7834432 -142949121 + AluSg SINE Alu 1 299 -11 937 219 0 9 chr11 7834855 7835065 -142948488 + L1PA14 LINE L1 3264 3471 -2675 6807 171 19 18 chr11 7835067 7836690 -142946863 + L1PA14 LINE L1 3988 5608 -553 2330 145 6 11 chr11 7836690 7837056 -142946497 + THE1B LTR MaLR 1 364 0 6807 171 19 18 chr11 7837056 7837143 -142946410 + L1PA14 LINE L1 5608 5693 -468 2348 122 11 27 chr11 7837143 7837513 -142946040 + THE1B LTR MaLR 1 364 0 6807 171 19 18 chr11 7837513 7837942 -142945611 + L1PA14 LINE L1 5693 6157 -4 2080 142 0 3 chr11 7837952 7838254 -142945299 + AluSx SINE Alu 1 301 -11 255 125 0 0 chr11 7838254 7838294 -142945259 + (TA)n Simple_repeat Simple_repeat 1 40 0 1008 265 53 11 chr11 7838474 7838930 -142944623 + L1M4 LINE L1 4673 5147 -999 784 218 74 10 chr11 7838932 7839209 -142944344 + MLT1A2 LTR MaLR 2 390 0 369 216 144 0 chr11 7839209 7839320 -142944233 + L1M4 LINE L1 5140 5266 -880 695 256 58 0 chr11 7839351 7839523 -142944030 + MER58A DNA MER1_type 43 224 0 289 229 0 12 chr11 7839527 7839610 -142943943 + L1M LINE L1 5263 5344 -822 412 263 136 28 chr11 7839623 7840047 -142943506 - L1M4b LINE L1 -5127 1820 1332 9531 206 85 2 chr11 7840383 7842344 -142941209 + L1M2 LINE L1 4 2127 -4722 440 333 71 71 chr11 7842353 7842679 -142940874 - MER72 LTR ERV1 -346 376 48 2527 84 21 32 chr11 7842679 7843058 -142940495 - THE1C LTR MaLR 0 375 1 440 333 71 71 chr11 7843058 7843082 -142940471 - MER72 LTR ERV1 -673 49 26 6008 173 50 10 chr11 7843113 7844931 -142938622 + L1P4 LINE L1 3868 5759 -406 5220 116 69 42 chr11 7844932 7846068 -142937485 - MER11A LTR ERVK 0 1266 1 471 63 0 0 chr11 7846070 7846133 -142937420 + L1P4 LINE L1 5757 5819 -349 20723 37 0 0 chr11 7846139 7848678 -142934875 - L1PA6 LINE L1 -2032 4114 1575 9771 55 12 2 chr11 7848678 7850701 -142932852 + L1PA6 LINE L1 4117 6154 0 6769 140 33 8 chr11 7850760 7852223 -142931330 + L1MA2 LINE L1 2469 3971 -3594 8681 143 17 9 chr11 7852224 7854812 -142928741 + L1MA2 LINE L1 5122 7723 0 403 240 70 63 chr11 7854902 7855110 -142928443 - L1M4 LINE L1 -1901 4245 4037 6875 59 22 0 chr11 7855244 7855904 -142927649 - L1PA7 LINE L1 -14 6140 5469 2422 82 0 0 chr11 7855904 7856207 -142927346 - AluY SINE Alu -8 303 1 6875 59 22 0 chr11 7856207 7856648 -142926905 - L1PA7 LINE L1 -685 5469 5039 312 308 45 50 chr11 7857319 7857517 -142926036 - L1MEd LINE L1 -5282 837 641 21 0 0 0 chr11 7857893 7857914 -142925639 + AT_rich Low_complexity Low_complexity 1 21 0 2003 119 0 10 chr11 7857914 7858208 -142925345 - AluSq SINE Alu -22 291 1 29 0 0 0 chr11 7859003 7859032 -142924521 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr11 7859158 7859190 -142924363 + AT_rich Low_complexity Low_complexity 1 32 0 2392 304 58 27 chr11 7861601 7862524 -142921029 - L2 LINE L2 -2142 1172 221 204 288 0 0 chr11 7863626 7863685 -142919868 + L3 LINE CR1 1361 1419 -158 203 88 29 0 chr11 7864363 7864397 -142919156 + (CA)n Simple_repeat Simple_repeat 1 35 0 239 338 104 24 chr11 7864678 7864920 -142918633 + MIR SINE MIR 2 259 -3 1595 182 3 55 chr11 7865199 7865506 -142918047 + AluJo SINE Alu 2 292 -20 1562 189 3 19 chr11 7865724 7866047 -142917506 - L1MD1 LINE L1 0 6242 5925 674 251 9 48 chr11 7866047 7866176 -142917377 - L1M4 LINE L1 -3738 2408 2288 2219 119 0 10 chr11 7866176 7866487 -142917066 - AluSg SINE Alu -2 308 1 674 251 9 48 chr11 7866487 7866581 -142916972 - L1M4 LINE L1 -3858 2288 2192 957 225 22 5 chr11 7866584 7866806 -142916747 + MLT1D-int LTR MaLR 291 516 -855 528 283 29 0 chr11 7866816 7866954 -142916599 + MLT1D-int LTR MaLR 746 887 -484 1492 232 40 96 chr11 7867097 7867597 -142915956 + MLT1D-int LTR MaLR 900 1371 0 1869 195 82 47 chr11 7867597 7868085 -142915468 + MLT1D LTR MaLR 1 505 0 360 216 74 99 chr11 7868146 7868308 -142915245 - L2 LINE L2 0 3313 3156 430 310 60 8 chr11 7868471 7868776 -142914777 + L1P2 LINE L1 5509 5835 -319 205 240 13 27 chr11 7868990 7869065 -142914488 + T-rich Low_complexity Low_complexity 2 75 0 344 182 0 0 chr11 7869467 7869522 -142914031 + MER5A DNA MER1_type 133 187 -2 705 249 29 0 chr11 7869527 7869700 -142913853 - MER5B DNA MER1_type 0 178 1 726 239 34 29 chr11 7869988 7870193 -142913360 - L2 LINE L2 0 3313 3108 210 204 20 0 chr11 7870268 7870317 -142913236 + (TA)n Simple_repeat Simple_repeat 2 51 0 279 316 44 53 chr11 7870355 7870469 -142913084 - MIR SINE MIR -133 129 17 2273 101 0 0 chr11 7870481 7870778 -142912775 - AluSg SINE Alu -13 297 1 560 121 30 0 chr11 7871143 7871275 -142912278 + (TA)n Simple_repeat Simple_repeat 1 136 0 2072 269 87 56 chr11 7871287 7872220 -142911333 - HERV16 LTR ERVL -2422 2574 1613 1535 303 35 0 chr11 7872249 7872705 -142910848 - HERV16 LTR ERVL -3598 1398 927 1468 304 55 16 chr11 7872934 7873499 -142910054 - HERV16 LTR ERVL -4372 624 38 1265 214 33 63 chr11 7873518 7873688 -142909865 + MLT1A2 LTR MaLR 1 175 -199 363 23 0 0 chr11 7873688 7873732 -142909821 + (TC)n Simple_repeat Simple_repeat 1 44 0 1265 214 33 63 chr11 7873732 7873926 -142909627 + MLT1A2 LTR MaLR 175 354 -20 786 300 45 16 chr11 7873925 7874172 -142909381 - LTR16A LTR ERVL -18 432 179 * 547 226 132 0 chr11 7875007 7875197 -142908356 - L1ME3A LINE L1 -220 5950 5736 456 245 35 14 chr11 7875244 7875387 -142908166 - L1M4 LINE L1 -3619 2527 2382 4684 171 51 17 chr11 7875462 7876821 -142906732 - L1PA16 LINE L1 -12 6154 4740 2753 173 26 116 chr11 7876819 7877212 -142906341 + L1PA14 LINE L1 5437 5729 -432 * 7079 47 18 0 chr11 7877212 7878356 -142905197 + L1PA6 LINE L1 4984 6150 -4 2753 173 26 116 chr11 7878356 7878730 -142904823 + L1PA14 LINE L1 5729 6135 -26 886 269 63 12 chr11 7878749 7879132 -142904421 + MER115 DNA AcHobo 238 693 0 254 293 40 30 chr11 7879144 7879243 -142904310 + L2 LINE L2 2868 2967 -305 409 305 65 45 chr11 7879270 7879886 -142903667 + L1MC/D LINE L1 4062 4689 -1457 2179 141 20 0 chr11 7880115 7880456 -142903097 + MER7A DNA MER2_type 1 346 0 24 0 0 0 chr11 7880558 7880582 -142902971 + AT_rich Low_complexity Low_complexity 1 24 0 449 271 87 64 chr11 7880622 7881136 -142902417 + L1MC/D LINE L1 5120 5653 -877 2026 130 0 35 chr11 7881136 7881452 -142902101 - AluSc SINE Alu -4 305 1 449 271 87 64 chr11 7881452 7881586 -142901967 + L1MC/D LINE L1 5653 5783 -747 1788 58 4 0 chr11 7881633 7881859 -142901694 - L1PA12 LINE L1 -4 6164 5938 413 391 66 0 chr11 7882186 7882383 -142901170 + L2 LINE L2 3061 3270 -2 2299 95 13 0 chr11 7884908 7885214 -142898339 - AluSg SINE Alu 0 310 1 335 280 51 34 chr11 7885757 7885875 -142897678 + L2 LINE L2 3149 3268 -4 33 25 0 0 chr11 7887834 7887874 -142895679 + AT_rich Low_complexity Low_complexity 1 40 0 257 301 96 0 chr11 7889095 7889178 -142894375 + MIR SINE MIR 84 174 -88 216 0 0 0 chr11 7890221 7890245 -142893308 + (TC)n Simple_repeat Simple_repeat 1 24 0 228 163 0 0 chr11 7890345 7890388 -142893165 + CT-rich Low_complexity Low_complexity 1 43 0 25 65 0 0 chr11 7891020 7891066 -142892487 + AT_rich Low_complexity Low_complexity 1 46 0 637 305 147 13 chr11 7891136 7891611 -142891942 + L1ME4a LINE L1 5330 5868 -253 212 237 68 0 chr11 7892090 7892149 -142891404 + L2 LINE L2 3210 3272 0 266 274 147 10 chr11 7892234 7892336 -142891217 + MIR3 SINE MIR 3 118 -90 430 333 59 34 chr11 7892639 7892843 -142890710 - MIR SINE MIR -10 252 44 279 157 100 14 chr11 7892942 7893012 -142890541 + L1MA9 LINE L1 6215 6290 -22 2452 58 6 12 chr11 7893920 7894246 -142889307 - L1P3 LINE L1 -457 5715 5392 2718 46 6 6 chr11 7894246 7894583 -142888970 + L1PA8 LINE L1 5818 6165 -7 21 57 0 0 chr11 7894759 7894794 -142888759 + AT_rich Low_complexity Low_complexity 1 35 0 192 258 0 45 chr11 7895180 7895246 -142888307 - L2 LINE L2 -340 2974 2912 42539 35 21 2 chr11 7895295 7901331 -142882222 + L1PA2 LINE L1 1 6155 0 380 358 72 21 chr11 7901345 7901624 -142881929 - L2 LINE L2 -458 2856 2564 2234 89 10 3 chr11 7901633 7901936 -142881617 - AluSc SINE Alu -4 305 1 438 292 42 58 chr11 7901964 7902224 -142881329 - L1MEc LINE L1 -3984 2412 2157 980 163 52 0 chr11 7902280 7902433 -142881120 - AluJ SINE Alu -22 290 130 1473 74 0 16 chr11 7902443 7902632 -142880921 + AluY SINE Alu 1 186 -125 744 157 8 0 chr11 7902770 7902891 -142880662 - AluJ SINE Alu -180 122 1 2023 141 0 0 chr11 7903097 7903381 -142880172 + AluSx SINE Alu 1 284 -28 426 337 75 33 chr11 7904468 7904800 -142878753 - HAL1 LINE L1 -1054 1453 1108 2550 70 0 3 chr11 7904950 7905262 -142878291 - AluY SINE Alu 0 311 1 352 321 47 26 chr11 7906383 7906573 -142876980 + L1 LINE L1 3623 3816 -2330 250 169 31 0 chr11 7907159 7907224 -142876329 + (TA)n Simple_repeat Simple_repeat 2 68 0 253 197 98 0 chr11 7907706 7907767 -142875786 - L1ME LINE L1 -474 5647 5581 1661 285 106 29 chr11 7908080 7909153 -142874400 + HAL1 LINE L1 1351 2506 -1 2110 173 32 42 chr11 7909399 7909948 -142873605 + L1MB7 LINE L1 4902 5451 -733 1927 249 54 33 chr11 7909933 7910448 -142873105 + L1ME4a LINE L1 1 526 -6333 * 554 256 5 46 chr11 7910448 7910667 -142872886 + L1ME4a LINE L1 2853 3062 -3897 1141 167 19 0 chr11 7910684 7910900 -142872653 - L1MB7 LINE L1 -317 5867 5648 225 217 65 0 chr11 7910898 7910944 -142872609 - L1M4b LINE L1 -6810 49 1 * 753 152 10 76 chr11 7910929 7911127 -142872426 - L1MB7 LINE L1 -733 5451 5267 2770 216 47 5 chr11 7911167 7911912 -142871641 + L1ME4a LINE L1 3042 3817 -3140 1987 165 31 21 chr11 7911889 7912308 -142871245 + L1MB7 LINE L1 6370 6792 -203 * 262 102 82 0 chr11 7912305 7912354 -142871199 - L1MB8 LINE L1 -236 5942 5890 * 2720 125 14 14 chr11 7913206 7913630 -142869923 - MSTA LTR MaLR -1 427 4 308 301 78 39 chr11 7914459 7914665 -142868888 + L1ME4a LINE L1 5580 5793 -1164 182 89 54 18 chr11 7914923 7914979 -142868574 + (TA)n Simple_repeat Simple_repeat 2 59 0 654 291 134 41 chr11 7915022 7915665 -142867888 + L1ME4a LINE L1 6187 6886 -46 1575 168 14 25 chr11 7916076 7916390 -142867163 + AluJo SINE Alu 1 311 0 218 105 26 0 chr11 7916765 7916803 -142866750 + (CA)n Simple_repeat Simple_repeat 1 39 0 886 274 82 50 chr11 7916803 7917219 -142866334 + LTR33 LTR ERVL 89 517 -4 4281 137 150 118 chr11 7917736 7918968 -142864585 - MER52C LTR ERV1 0 1278 8 180 158 0 0 chr11 7919250 7919288 -142864265 + (TG)n Simple_repeat Simple_repeat 1 38 0 519 318 92 32 chr11 7919311 7919896 -142863657 + L1M4 LINE L1 2681 3300 -2846 22 0 0 0 chr11 7920633 7920655 -142862898 + AT_rich Low_complexity Low_complexity 1 22 0 1735 154 37 20 chr11 7920821 7921120 -142862433 + AluJb SINE Alu 4 307 -5 587 333 60 32 chr11 7921366 7921898 -142861655 + HAL1 LINE L1 1138 1684 -823 1543 109 0 0 chr11 7921902 7922112 -142861441 + AluY SINE Alu 102 311 0 1990 167 0 0 chr11 7922390 7922702 -142860851 - AluSx SINE Alu 0 312 1 29 70 0 0 chr11 7922753 7922810 -142860743 + AT_rich Low_complexity Low_complexity 1 57 0 29 0 0 0 chr11 8123107 8123136 -142660417 + GC_rich Low_complexity Low_complexity 1 29 0 26 114 0 0 chr11 8123553 8123684 -142659869 + GC_rich Low_complexity Low_complexity 1 131 0 317 271 55 64 chr11 8124767 8124985 -142658568 + L1 LINE L1 3130 3345 -2801 241 106 0 85 chr11 8125044 8125091 -142658462 + tRNA-Ile-ATT tRNA tRNA 7 49 -28 2367 87 0 0 chr11 8125144 8125453 -142658100 - AluSg SINE Alu -1 309 1 348 227 10 41 chr11 8125613 8125710 -142657843 - MIR SINE MIR -102 160 67 226 383 12 0 chr11 8125800 8125881 -142657672 - L2 LINE L2 -87 3185 3104 586 283 69 43 chr11 8125975 8126208 -142657345 - L2 LINE L2 0 3313 3075 336 288 45 20 chr11 8126226 8126424 -142657129 - AluSp SINE Alu 0 303 101 23 0 0 0 chr11 8126509 8126532 -142657021 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 8126633 8126654 -142656899 + AT_rich Low_complexity Low_complexity 1 21 0 2193 101 0 0 chr11 8126998 8127294 -142656259 + AluSx SINE Alu 1 296 -16 427 189 42 32 chr11 8127376 8127471 -142656082 - MER21B LTR ERV1 -767 96 1 1209 101 43 14 chr11 8127875 8128082 -142655471 + AluSp SINE Alu 1 213 -100 1905 123 0 7 chr11 8128465 8128750 -142654803 - AluSx SINE Alu -15 297 15 822 189 6 0 chr11 8128756 8128915 -142654638 + AluJb SINE Alu 146 305 -7 2282 96 3 0 chr11 8128917 8129229 -142654324 + AluSp SINE Alu 1 313 0 576 197 118 8 chr11 8129238 8129365 -142654188 - MLT1A1 LTR MaLR -224 141 1 2422 169 11 20 chr11 8129448 8129686 -142653867 - Tigger2a DNA MER2_type -2274 434 200 2123 109 0 0 chr11 8129686 8129980 -142653573 - AluSg SINE Alu -16 294 1 2422 169 11 20 chr11 8129980 8130179 -142653374 - Tigger2a DNA MER2_type -2508 200 1 1988 108 3 3 chr11 8130341 8130629 -142652924 - AluSx SINE Alu -12 300 13 3620 181 33 41 chr11 8130733 8131035 -142652518 + LTR39 LTR ERV1 1 304 -479 2080 110 0 7 chr11 8131035 8131336 -142652217 + AluSc SINE Alu 1 299 -10 3620 181 33 41 chr11 8131336 8131653 -142651900 + LTR39 LTR ERV1 304 615 -168 2452 40 3 3 chr11 8131653 8131952 -142651601 + AluY SINE Alu 1 299 -12 3620 181 33 41 chr11 8131952 8132120 -142651433 + LTR39 LTR ERV1 615 783 0 531 221 82 0 chr11 8132270 8132392 -142651161 - MER4D LTR ERV1 -8 895 764 1438 143 44 8 chr11 8132405 8132656 -142650897 - MER4D LTR ERV1 -385 518 259 2184 103 0 0 chr11 8132803 8133103 -142650450 - AluSx SINE Alu -10 302 3 2488 131 144 51 chr11 8133128 8133357 -142650196 + MLT2B1 LTR ERVL 4 210 -310 2228 104 13 0 chr11 8133357 8133665 -142649888 - AluSx SINE Alu 0 312 1 2488 131 144 51 chr11 8133665 8133908 -142649645 + MLT2B1 LTR ERVL 210 520 0 357 344 114 30 chr11 8133908 8134038 -142649515 - L1MC4a LINE L1 -1649 6228 6110 2007 100 48 0 chr11 8134038 8134328 -142649225 - AluSg SINE Alu -3 307 4 357 344 114 30 chr11 8134328 8134459 -142649094 - L1MC4a LINE L1 -1767 6110 5945 370 240 10 10 chr11 8134464 8134564 -142648989 - L1MC4a LINE L1 -1984 5893 5794 216 0 0 0 chr11 8134564 8134588 -142648965 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2015 81 26 0 chr11 8134595 8134867 -142648686 - AluSg SINE Alu -31 279 1 219 178 20 69 chr11 8135489 8135590 -142647963 + (CCCCG)n Simple_repeat Simple_repeat 2 97 0 259 268 8 55 chr11 8135753 8135880 -142647673 + G-rich Low_complexity Low_complexity 2 122 0 501 253 42 57 chr11 8135963 8136170 -142647383 - L1MC4a LINE L1 -1570 4645 4441 1553 153 37 48 chr11 8136170 8136465 -142647088 + AluJo SINE Alu 1 292 -20 501 253 42 57 chr11 8136465 8136522 -142647031 - L1MC4a LINE L1 -1774 4441 4385 706 289 107 35 chr11 8136543 8136861 -142646692 - MLT1I LTR MaLR 0 409 69 13321 125 45 11 chr11 8136921 8138982 -142644571 + Tigger1 DNA MER2_type 1 2131 -287 1675 103 53 14 chr11 8139468 8139750 -142643803 - AluY SINE Alu -18 293 1 245 186 0 43 chr11 8139750 8139820 -142643733 - L1MC4a LINE L1 -2205 4010 3944 441 324 81 50 chr11 8139958 8140163 -142643390 - L1MC4a LINE L1 -4135 2080 1883 189 0 0 0 chr11 8140163 8140184 -142643369 + (TC)n Simple_repeat Simple_repeat 2 22 0 183 80 0 0 chr11 8140183 8140208 -142643345 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 441 324 81 50 chr11 8140184 8140323 -142643230 - L1MC4a LINE L1 -4332 1883 1750 405 258 70 48 chr11 8140450 8140679 -142642874 - L1MC4a LINE L1 -4766 1630 1397 396 297 73 50 chr11 8140912 8141215 -142642338 - L3 LINE CR1 -458 1119 810 1760 149 7 10 chr11 8141383 8141672 -142641881 + AluSx SINE Alu 1 288 -24 1640 171 18 0 chr11 8141707 8141988 -142641565 + AluJo SINE Alu 1 286 -26 351 65 0 0 chr11 8141988 8142034 -142641519 + (CAT)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr11 8142402 8142425 -142641128 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2025 109 3 0 chr11 8142791 8143116 -142640437 + AluSp SINE Alu 1 326 0 743 150 39 8 chr11 8143581 8143708 -142639845 + FLAM_C SINE Alu 1 131 -2 2040 91 10 29 chr11 8143729 8144037 -142639516 + AluSg SINE Alu 1 302 -8 538 248 26 0 chr11 8144039 8144152 -142639401 + MER21B LTR ERV1 18 133 -730 2402 201 34 45 chr11 8144190 8144371 -142639182 + MER21B LTR ERV1 136 317 -546 1717 109 113 8 chr11 8144371 8144637 -142638916 + AluSg SINE Alu 1 294 -16 2402 201 34 45 chr11 8144637 8145115 -142638438 + MER21B LTR ERV1 317 755 -108 255 150 25 0 chr11 8145117 8145157 -142638396 - Alu SINE Alu -259 41 1 874 182 96 0 chr11 8145244 8145431 -142638122 + MER39 LTR ERV1 1 205 -502 4152 166 67 44 chr11 8145598 8145620 -142637933 - L1M4 LINE L1 -998 5148 5128 1301 171 114 11 chr11 8145620 8145900 -142637653 - AluJo SINE Alu -3 309 1 4152 166 67 44 chr11 8145900 8146714 -142636839 - L1M4 LINE L1 -1018 5128 4283 612 254 0 0 chr11 8146714 8146855 -142636698 - FLAM_A SINE Alu 0 141 1 4152 166 67 44 chr11 8146855 8147009 -142636544 - L1M4 LINE L1 -1863 4283 4134 186 300 117 50 chr11 8147072 8147192 -142636361 - MIR SINE MIR -63 145 18 298 341 225 0 chr11 8148271 8148573 -142634980 + L2 LINE L2 2459 2828 -486 753 320 119 0 chr11 8148576 8148854 -142634699 - HERV16 LTR ERVL -2146 2850 2540 1429 320 79 9 chr11 8148854 8149425 -142634128 + ERVL LTR ERVL 2895 3505 -2259 3103 296 67 48 chr11 8149427 8151094 -142632459 + ERVL LTR ERVL 3357 5383 -381 905 281 139 19 chr11 8151258 8151632 -142631921 + LTR16B LTR ERVL 44 462 -2 1597 101 9 4 chr11 8151686 8151914 -142631639 + AluSc SINE Alu 1 229 -80 1966 125 10 3 chr11 8151949 8152237 -142631316 + AluJb SINE Alu 1 290 -22 1292 67 0 22 chr11 8152574 8152754 -142630799 + AluY SINE Alu 118 293 -18 219 121 0 0 chr11 8152823 8152856 -142630697 + MIR SINE MIR 190 222 -40 * 610 207 67 7 chr11 8152841 8152991 -142630562 + L2 LINE L2 2671 2829 -485 522 297 71 65 chr11 8153021 8153331 -142630222 - MLT1I LTR MaLR -27 382 71 381 223 204 0 chr11 8153414 8153571 -142629982 + L2 LINE L2 2839 3027 -286 263 266 219 41 chr11 8153586 8153755 -142629798 - MIR SINE MIR -12 250 52 1975 104 11 0 chr11 8153764 8154042 -142629511 + AluSx SINE Alu 17 297 -15 1990 103 10 13 chr11 8154053 8154365 -142629188 + AluY SINE Alu 1 311 0 1376 61 17 0 chr11 8154365 8154546 -142629007 + AluSg/x SINE Alu 127 310 0 193 311 97 19 chr11 8154815 8154918 -142628635 + L2 LINE L2 2656 2766 -548 607 183 7 51 chr11 8154966 8155103 -142628450 - FLAM_C SINE Alu -11 132 2 323 310 71 56 chr11 8155228 8155425 -142628128 + L2 LINE L2 2890 3089 -183 1911 116 34 0 chr11 8155431 8155723 -142627830 - AluSc SINE Alu -6 303 2 270 0 0 0 chr11 8155724 8155754 -142627799 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1789 153 4 0 chr11 8155754 8156035 -142627518 - AluSx SINE Alu -30 282 1 1971 101 14 3 chr11 8156405 8156692 -142626861 + AluSq SINE Alu 5 294 -19 436 273 232 0 chr11 8156697 8156895 -142626658 - MIR SINE MIR -10 252 9 393 240 51 52 chr11 8157159 8157316 -142626237 + MIR3 SINE MIR 1 159 -61 558 78 0 11 chr11 8157714 8157804 -142625749 - L1PB1 LINE L1 -3 6148 6060 4438 158 48 4 chr11 8157805 8158898 -142624655 - L1PB1 LINE L1 -154 5997 4852 4083 177 99 17 chr11 8158918 8159873 -142623680 + L1MB7 LINE L1 5106 6148 -36 2043 116 0 0 chr11 8159873 8160181 -142623372 - AluSx SINE Alu 0 308 1 4083 177 99 17 chr11 8160181 8160222 -142623331 + L1MB7 LINE L1 6148 6184 0 500 216 0 0 chr11 8160305 8160393 -142623160 + MER81 DNA DNA 27 114 0 421 232 29 31 chr11 8160763 8160925 -142622628 + MLT2E LTR ERVL 201 576 -87 1158 106 0 0 chr11 8161035 8161196 -142622357 - AluSg/x SINE Alu -17 295 135 384 239 103 49 chr11 8161856 8162040 -142621513 - MARNA DNA Mariner -74 512 319 765 134 164 0 chr11 8162041 8162175 -142621378 - MLT1A2 LTR MaLR 0 374 219 4519 139 31 62 chr11 8162176 8162428 -142621125 - L1M1 LINE L1 -658 5645 5387 461 63 0 0 chr11 8162428 8162491 -142621062 - L1PA6 LINE L1 -2 6152 6090 4519 139 31 62 chr11 8162491 8163221 -142620332 - L1M1 LINE L1 -916 5387 4722 1799 161 0 16 chr11 8163221 8163525 -142620028 - AluJb SINE Alu -13 299 1 4519 139 31 62 chr11 8163525 8163798 -142619755 - L1M1 LINE L1 -1581 4722 4442 620 241 161 6 chr11 8164163 8164337 -142619216 - MIR SINE MIR -1 261 61 500 236 103 10 chr11 8165473 8165676 -142617877 - L1ME4a LINE L1 -59 6062 5841 722 114 19 0 chr11 8165851 8165956 -142617597 + AluSp SINE Alu 2 108 -205 517 238 82 41 chr11 8165957 8166201 -142617352 - HAL1 LINE L1 -1162 1345 1092 * 2574 232 70 64 chr11 8166195 8166434 -142617119 - L1ME3A LINE L1 -1 6169 5933 988 161 15 65 chr11 8166434 8166556 -142616997 - MER5A DNA MER1_type 0 189 79 2130 112 7 3 chr11 8166556 8166861 -142616692 - AluSg SINE Alu -4 306 1 988 161 15 65 chr11 8166861 8166937 -142616616 - MER5A DNA MER1_type -110 79 1 2574 232 70 64 chr11 8166937 8167046 -142616507 - L1ME3A LINE L1 -237 5933 5826 1735 139 52 14 chr11 8167046 8167333 -142616220 - AluJb SINE Alu -14 298 1 2574 232 70 64 chr11 8167333 8168219 -142615334 - L1ME3A LINE L1 -344 5826 4925 723 257 70 43 chr11 8168281 8168357 -142615196 - L1ME3A LINE L1 -1226 4920 4848 2131 128 0 0 chr11 8168357 8168661 -142614892 + AluSx SINE Alu 1 304 -8 723 257 70 43 chr11 8168661 8168911 -142614642 - L1ME3A LINE L1 -1298 4848 4585 795 132 47 0 chr11 8169091 8169220 -142614333 + AluJb SINE Alu 2 136 -176 2317 30 3 30 chr11 8169229 8169530 -142614023 + AluY SINE Alu 1 293 -18 272 263 90 43 chr11 8169999 8170131 -142613422 + MIR SINE MIR 35 172 -42 1999 117 10 10 chr11 8170474 8170773 -142612780 - AluSx SINE Alu -11 301 3 1826 174 0 28 chr11 8171120 8171441 -142612112 + AluJo SINE Alu 1 312 0 2092 141 3 0 chr11 8172212 8172516 -142611037 - AluSx SINE Alu -7 305 1 588 187 7 113 chr11 8172556 8172663 -142610890 + AluJo SINE Alu 3 120 -192 2215 69 0 31 chr11 8172663 8172986 -142610567 - AluY SINE Alu 0 314 1 2320 92 3 0 chr11 8172991 8173284 -142610269 - AluSq SINE Alu -19 294 1 588 187 7 113 chr11 8173284 8173319 -142610234 + AluJo SINE Alu 124 136 -176 316 235 71 0 chr11 8173411 8173496 -142610057 - MIR3 SINE MIR -7 201 111 3210 77 9 14 chr11 8173701 8174141 -142609412 + L1PA7 LINE L1 5717 6154 0 2303 117 0 0 chr11 8174170 8174468 -142609085 + AluSx SINE Alu 1 298 -14 2490 66 0 3 chr11 8174481 8174783 -142608770 + AluY SINE Alu 1 301 -10 700 107 0 19 chr11 8174810 8174913 -142608640 - AluJb SINE Alu -10 302 202 527 167 0 94 chr11 8174939 8174967 -142608586 - L1MC4 LINE L1 -13 8029 8000 1887 113 84 0 chr11 8174967 8175241 -142608312 + AluSg SINE Alu 1 297 -13 527 167 0 94 chr11 8175241 8175350 -142608203 - L1MC4 LINE L1 -42 8000 7905 2526 170 42 35 chr11 8175350 8175782 -142607771 - L1MB8 LINE L1 -6 6172 5734 2380 100 7 0 chr11 8175782 8176083 -142607470 - AluSq SINE Alu -10 303 1 2526 170 42 35 chr11 8176083 8176221 -142607332 - L1MB8 LINE L1 -444 5734 5598 2113 120 3 13 chr11 8176222 8176383 -142607170 - AluSq SINE Alu -15 298 140 2218 110 0 3 chr11 8176383 8176674 -142606879 - AluSg SINE Alu -15 295 6 2113 120 3 13 chr11 8176674 8176813 -142606740 - AluSq SINE Alu -173 140 1 827 137 36 7 chr11 8176813 8176952 -142606601 - AluJb SINE Alu -169 143 1 873 155 83 28 chr11 8176953 8177134 -142606419 - L1MB8 LINE L1 -579 5605 5415 215 31 31 0 chr11 8177148 8177180 -142606373 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2165 119 0 0 chr11 8177184 8177470 -142606083 - AluSg SINE Alu -24 286 1 636 178 6 118 chr11 8177912 8178081 -142605472 - AluJo/FRAM SINE Alu -16 286 137 2488 73 7 0 chr11 8178081 8178381 -142605172 - AluSp SINE Alu -7 306 5 1404 175 144 0 chr11 8178382 8178639 -142604914 - AluJb SINE Alu -7 295 2 645 203 24 8 chr11 8178656 8178779 -142604774 - FLAM_C SINE Alu -7 126 2 1666 183 0 10 chr11 8179108 8179408 -142604145 + AluJo SINE Alu 1 297 -15 2122 128 10 0 chr11 8179596 8179894 -142603659 - AluSx SINE Alu -11 301 1 2304 90 7 3 chr11 8179943 8180243 -142603310 - AluSc SINE Alu -8 301 1 2426 80 0 0 chr11 8180251 8180553 -142603000 - AluY SINE Alu -9 302 1 2370 96 3 3 chr11 8181096 8181409 -142602144 - AluSq SINE Alu 0 313 1 217 215 154 0 chr11 8181474 8181539 -142602014 - MIR3 SINE MIR -3 205 131 193 299 75 0 chr11 8181618 8181685 -142601868 - MIR SINE MIR -96 112 41 33 0 0 0 chr11 8182199 8182232 -142601321 + AT_rich Low_complexity Low_complexity 1 33 0 1462 190 34 24 chr11 8182274 8182411 -142601142 + AluJb SINE Alu 1 135 -177 2339 80 3 7 chr11 8182411 8182737 -142600816 + AluSq SINE Alu 1 325 0 1462 190 34 24 chr11 8182737 8182893 -142600660 + AluJb SINE Alu 135 298 -14 2292 60 35 3 chr11 8183058 8183341 -142600212 - AluY SINE Alu -19 292 1 654 176 61 8 chr11 8183525 8183656 -142599897 + MER49 LTR ERV1 1 138 -785 1277 178 4 17 chr11 8183657 8183888 -142599665 - AluJb SINE Alu -44 268 41 261 229 0 0 chr11 8183898 8183946 -142599607 - MER4D LTR ERV1 -759 144 97 * 429 110 74 7 chr11 8183926 8184014 -142599539 + MER49 LTR ERV1 140 223 -680 1755 148 24 3 chr11 8184014 8184305 -142599248 + AluJb SINE Alu 1 297 -15 429 110 74 7 chr11 8184305 8184351 -142599202 + MER49 LTR ERV1 223 264 -639 2344 86 3 0 chr11 8184451 8184742 -142598811 - AluSp SINE Alu -21 292 1 640 295 25 38 chr11 8184752 8185034 -142598519 - L2 LINE L2 -244 3069 2793 948 184 50 6 chr11 8185034 8185213 -142598340 + MER5A DNA MER1_type 1 187 -2 1735 177 0 0 chr11 8185748 8186047 -142597506 - AluJb SINE Alu -13 299 1 2112 99 48 7 chr11 8186055 8186349 -142597204 - AluSq SINE Alu -7 306 1 1528 138 0 0 chr11 8186713 8186843 -142596710 + AluJo SINE Alu 1 133 -179 1892 152 20 3 chr11 8186843 8187139 -142596414 + AluJo SINE Alu 1 301 -11 1528 138 0 0 chr11 8187139 8187226 -142596327 + AluJo SINE Alu 132 218 -94 216 0 0 0 chr11 8187261 8187285 -142596268 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2290 110 0 3 chr11 8187343 8187652 -142595901 + AluSq SINE Alu 1 308 -5 2182 80 28 0 chr11 8187761 8188047 -142595506 + AluY SINE Alu 1 294 -17 276 206 0 98 chr11 8188048 8188150 -142595403 - L1ME3 LINE L1 -16 6146 6055 588 285 65 40 chr11 8188489 8188582 -142594971 - L1ME3 LINE L1 -747 5399 5310 2090 107 14 7 chr11 8188582 8188871 -142594682 - AluSx SINE Alu -21 291 1 588 285 65 40 chr11 8188871 8189040 -142594513 - L1ME3 LINE L1 -836 5310 5417 2110 101 3 17 chr11 8189040 8189337 -142594216 - AluSq SINE Alu -20 293 1 588 285 65 40 chr11 8189337 8189543 -142594010 - L1ME3 LINE L1 -728 5418 5219 21 0 0 0 chr11 8189619 8189640 -142593913 + AT_rich Low_complexity Low_complexity 1 21 0 208 241 19 0 chr11 8189675 8189729 -142593824 + CT-rich Low_complexity Low_complexity 4 58 0 720 163 0 8 chr11 8189729 8189852 -142593701 - FLAM_A SINE Alu 0 142 21 2224 127 3 0 chr11 8189914 8190221 -142593332 - AluSq SINE Alu -4 309 2 1833 142 62 0 chr11 8190225 8190513 -142593040 - AluJb SINE Alu -6 306 1 2996 162 30 87 chr11 8190513 8190791 -142592762 - L1MB5 LINE L1 -41 6133 5841 2336 109 3 0 chr11 8190791 8191095 -142592458 - AluSx SINE Alu -7 305 1 2996 162 30 87 chr11 8191095 8191455 -142592098 - L1MB5 LINE L1 -333 5841 5534 3503 125 2 4 chr11 8191455 8191967 -142591586 - MER9 LTR ERVK 0 511 1 2996 162 30 87 chr11 8191967 8192017 -142591536 - L1MB5 LINE L1 -640 5534 5483 2393 84 0 3 chr11 8192278 8192576 -142590977 - AluSx SINE Alu -15 297 1 1398 234 77 36 chr11 8192576 8193020 -142590533 - MLT1C LTR MaLR 0 467 6 2383 99 0 0 chr11 8193050 8193353 -142590200 - AluSg SINE Alu -7 303 1 2631 230 61 20 chr11 8193391 8194375 -142589178 - L1ME3A LINE L1 -161 6009 4983 2463 74 3 0 chr11 8194739 8195038 -142588515 - AluSp SINE Alu -13 300 1 403 245 0 110 chr11 8195349 8195463 -142588090 - MIR SINE MIR -6 256 162 1621 171 40 3 chr11 8195463 8195761 -142587792 - AluJb SINE Alu -3 309 1 403 245 0 110 chr11 8195761 8195801 -142587752 - MIR SINE MIR -100 162 119 2171 127 97 76 chr11 8195834 8195934 -142587619 - MER39 LTR ERV1 -1 706 610 1782 169 19 7 chr11 8195934 8196241 -142587312 + AluJo SINE Alu 1 311 -1 2171 127 97 76 chr11 8196241 8196263 -142587290 - MER39 LTR ERV1 -97 610 590 2529 58 6 16 chr11 8196263 8196576 -142586977 + AluY SINE Alu 1 310 -1 2171 127 97 76 chr11 8196576 8196978 -142586575 - MER39 LTR ERV1 -117 590 170 180 0 0 0 chr11 8197080 8197100 -142586453 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1253 103 0 29 chr11 8197179 8197354 -142586199 + AluSx SINE Alu 1 170 -142 2331 105 0 13 chr11 8197381 8197696 -142585857 - AluSx SINE Alu -1 311 1 966 182 0 16 chr11 8197732 8197919 -142585634 - AluJb SINE Alu -2 310 127 2181 116 0 3 chr11 8197941 8198235 -142585318 - AluSx SINE Alu -19 293 1 2266 102 3 0 chr11 8198267 8198579 -142584974 - AluSp SINE Alu 0 313 1 2375 199 59 109 chr11 8199131 8199805 -142583748 - HAL1 LINE L1 -634 1873 1167 2191 103 3 0 chr11 8199805 8200120 -142583433 - AluSq SINE Alu 0 316 1 1490 153 111 0 chr11 8200127 8200389 -142583164 - AluJb SINE Alu -21 291 1 2375 199 59 109 chr11 8200389 8200564 -142582989 - HAL1 LINE L1 -1346 1161 1063 1708 138 40 20 chr11 8200564 8200862 -142582691 - AluJo SINE Alu -8 304 1 2375 199 59 109 chr11 8200862 8200939 -142582614 - HAL1 LINE L1 -1444 1063 984 1732 187 76 22 chr11 8201071 8201308 -142582245 - L1MB8 LINE L1 0 6178 5955 180 0 0 0 chr11 8201308 8201328 -142582225 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2127 98 3 7 chr11 8201328 8201613 -142581940 - AluSq SINE Alu -29 284 1 1732 187 76 22 chr11 8201613 8201781 -142581772 - L1MB8 LINE L1 -222 5956 5750 1167 174 11 114 chr11 8201799 8202080 -142581473 - AluJo SINE Alu -19 293 42 524 196 116 0 chr11 8202098 8202210 -142581343 - FLAM_C SINE Alu -8 125 1 511 254 103 46 chr11 8202213 8202532 -142581021 - HAL1 LINE L1 -2137 370 2 421 317 18 18 chr11 8202576 8202740 -142580813 - MIR3 SINE MIR -9 199 36 2222 103 7 10 chr11 8202995 8203296 -142580257 + AluSx SINE Alu 1 300 -12 2122 128 0 10 chr11 8203822 8204126 -142579427 + AluSx SINE Alu 6 306 -6 1993 148 3 0 chr11 8205013 8205318 -142578235 - AluSx SINE Alu -6 306 1 1575 180 27 38 chr11 8205417 8205557 -142577996 - L1MD1 LINE L1 0 6242 6102 1469 163 17 21 chr11 8205557 8205845 -142577708 + AluSq SINE Alu 16 302 -11 1575 180 27 38 chr11 8205845 8206077 -142577476 - L1MD1 LINE L1 -140 6102 5874 1261 201 74 72 chr11 8206083 8206586 -142576967 - L1MDa LINE L1 -4561 1519 1016 811 171 0 29 chr11 8206604 8206744 -142576809 - AluJo SINE Alu -176 136 1 257 250 37 9 chr11 8206745 8206882 -142576671 - L1MDa LINE L1 -5064 1019 879 2199 101 13 7 chr11 8206897 8207195 -142576358 - AluSg SINE Alu -10 300 1 1517 238 146 33 chr11 8207204 8207403 -142576150 - L1MDa LINE L1 -5292 778 603 194 62 31 0 chr11 8207403 8207435 -142576118 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1517 238 146 33 chr11 8207435 8207836 -142575717 - L1MDa LINE L1 -5467 603 110 1400 177 90 7 chr11 8208028 8208305 -142575248 + AluJo SINE Alu 3 302 -10 2195 129 0 3 chr11 8208721 8209023 -142574530 - AluSx SINE Alu -11 301 1 276 139 0 23 chr11 8209572 8209615 -142573938 - 5S rRNA rRNA -79 42 1 573 204 38 81 chr11 8210965 8211176 -142572377 - MER112 DNA MER1_type -58 202 1 754 262 16 60 chr11 8212661 8212913 -142570640 - MIR SINE MIR -6 256 16 1650 178 0 24 chr11 8212943 8213236 -142570317 - AluJo SINE Alu -26 286 1 231 173 53 93 chr11 8213281 8213356 -142570197 - MIR SINE MIR -70 192 121 1918 140 14 0 chr11 8213980 8214266 -142569287 - AluSx SINE Alu -22 290 1 1091 263 94 4 chr11 8215742 8216231 -142567322 - L2 LINE L2 0 3313 2766 2430 179 137 62 chr11 8216275 8217035 -142566518 - L1MC4 LINE L1 0 8042 7226 276 225 14 0 chr11 8217079 8217150 -142566403 - L1MC4 LINE L1 -805 7237 7166 1796 151 37 0 chr11 8217150 8217448 -142566105 - AluJo SINE Alu -3 309 1 1153 178 0 53 chr11 8217454 8217679 -142565874 - AluJo SINE Alu -15 297 85 692 140 156 1 chr11 8217682 8217858 -142565695 - L1MC4 LINE L1 -715 7143 6882 406 228 53 0 chr11 8217863 8217977 -142565576 + L2 LINE L2 3194 3313 0 * 665 273 5 20 chr11 8217976 8218174 -142565379 - L2 LINE L2 -600 2714 2520 923 265 79 0 chr11 8218177 8218430 -142565123 - Charlie8 DNA MER1_type -2143 274 2 1885 170 3 3 chr11 8219342 8219631 -142563922 - AluJb SINE Alu -23 289 1 2129 103 52 0 chr11 8219768 8220058 -142563495 - AluSq SINE Alu -8 305 1 2320 97 7 0 chr11 8220214 8220514 -142563039 - AluSc SINE Alu -7 302 1 1944 156 3 0 chr11 8221144 8221433 -142562120 - AluSx SINE Alu -22 290 1 2305 80 3 0 chr11 8221534 8221820 -142561733 - AluSg SINE Alu -22 288 2 246 245 0 0 chr11 8222035 8222084 -142561469 - MIR SINE MIR -70 138 90 2338 92 3 7 chr11 8222186 8222490 -142561063 - AluSx SINE Alu -9 303 1 1432 152 32 95 chr11 8222676 8222853 -142560700 - AluJo SINE Alu -16 296 146 2006 116 0 40 chr11 8222853 8223154 -142560399 - AluSx SINE Alu -23 289 1 1432 152 32 95 chr11 8223154 8223292 -142560261 - AluJo SINE Alu -166 146 1 950 182 82 29 chr11 8223981 8224261 -142559292 + L1MC5 LINE L1 7589 7883 -78 2232 116 0 0 chr11 8224344 8224637 -142558916 + AluY SINE Alu 2 294 -17 1341 73 11 28 chr11 8224745 8224924 -142558629 - AluSx SINE Alu -136 176 1 1884 153 3 16 chr11 8225955 8226263 -142557290 - AluJo SINE Alu -8 304 1 23 0 0 0 chr11 8226338 8226361 -142557192 + AT_rich Low_complexity Low_complexity 1 23 0 2463 84 0 3 chr11 8226548 8226859 -142556694 - AluSg SINE Alu 0 310 1 2074 87 3 93 chr11 8227666 8227999 -142555554 + AluSx SINE Alu 1 303 -9 267 241 0 0 chr11 8228540 8228594 -142554959 - L1ME4a LINE L1 -95 6026 5973 2493 110 48 20 chr11 8228640 8228994 -142554559 - THE1B LTR MaLR 0 364 1 11706 88 8 27 chr11 8228999 8229370 -142554183 - THE1B-int LTR MaLR -6 1574 1197 2057 125 3 28 chr11 8229370 8229691 -142553862 + AluSp SINE Alu 1 313 0 11706 88 8 27 chr11 8229691 8230925 -142552628 - THE1B-int LTR MaLR -383 1197 1 2324 104 75 23 chr11 8230925 8231270 -142552283 - THE1B LTR MaLR 0 364 2 2217 114 3 10 chr11 8232206 8232514 -142551039 - AluSx SINE Alu -6 306 1 188 115 0 0 chr11 8233208 8233234 -142550319 + L2 LINE L2 3241 3266 -6 268 228 28 4 chr11 8233349 8233612 -142549941 + (CA)n Simple_repeat Simple_repeat 1 269 0 1176 64 0 7 chr11 8233638 8233779 -142549774 - L1PA7 LINE L1 -15 6139 6000 739 299 104 31 chr11 8233939 8234110 -142549443 + L1ME3A LINE L1 4981 5138 -1024 2138 106 3 7 chr11 8234110 8234403 -142549150 - AluSx SINE Alu -20 292 1 739 299 104 31 chr11 8234403 8234943 -142548610 + L1ME3A LINE L1 5138 5652 -510 2429 70 0 3 chr11 8234943 8235242 -142548311 - AluY SINE Alu -13 298 1 1144 114 0 0 chr11 8235250 8235408 -142548145 - AluSp SINE Alu -19 294 137 626 232 52 21 chr11 8235408 8235602 -142547951 + L1ME3A LINE L1 5740 5939 -231 1508 152 119 15 chr11 8235604 8235873 -142547680 + AluJo SINE Alu 1 297 -15 466 230 72 7 chr11 8235939 8236078 -142547475 - MIR SINE MIR 0 262 115 2918 146 30 32 chr11 8236249 8236756 -142546797 - L1MA5 LINE L1 -4 6296 5791 605 193 30 37 chr11 8236813 8236948 -142546605 + MIR SINE MIR 15 148 -114 2080 130 13 0 chr11 8236976 8237275 -142546278 - AluSx SINE Alu -9 303 1 320 410 17 11 chr11 8237353 8237531 -142546022 - MIR3 SINE MIR -17 191 13 1824 158 0 16 chr11 8237557 8237861 -142545692 - AluJb SINE Alu -13 299 1 583 278 40 35 chr11 8237864 8238091 -142545462 - MIR SINE MIR -7 255 28 1754 164 10 7 chr11 8238849 8239141 -142544412 - AluJo SINE Alu -19 293 1 406 326 21 7 chr11 8239166 8239312 -142544241 - MIR SINE MIR -67 141 34 2424 70 3 0 chr11 8239514 8239812 -142543741 + AluSp SINE Alu 1 299 -14 226 308 26 26 chr11 8241239 8241356 -142542197 + L2 LINE L2 2894 3010 -262 375 298 69 23 chr11 8241360 8241578 -142541975 - MLT1L LTR MaLR -2 613 386 1519 200 10 23 chr11 8241643 8241943 -142541610 - AluJo SINE Alu -16 296 1 1801 181 13 3 chr11 8242029 8242338 -142541215 - AluJo SINE Alu 0 312 1 281 287 69 18 chr11 8242350 8242565 -142540988 - MLT1L LTR MaLR -310 201 1 191 398 65 30 chr11 8242585 8242786 -142540767 + L2 LINE L2 3030 3237 -35 229 303 10 71 chr11 8242939 8243038 -142540515 + L2 LINE L2 3221 3313 0 202 289 23 78 chr11 8243009 8243137 -142540416 - L2 LINE L2 -9 3304 3184 * 4015 180 127 77 chr11 8243316 8244587 -142538966 - L1M4 LINE L1 -964 5182 3849 810 249 5 22 chr11 8244588 8244773 -142538780 - AluJo SINE Alu -11 301 120 3787 197 52 49 chr11 8244795 8245182 -142538371 - L1MEc LINE L1 -3887 2509 2125 2381 62 13 10 chr11 8245182 8245488 -142538065 - AluY SINE Alu -4 307 1 3787 197 52 49 chr11 8245488 8245657 -142537896 - L1MEc LINE L1 -4271 2125 1958 613 269 8 0 chr11 8245657 8245787 -142537766 + FLAM_A SINE Alu 1 131 -2 3787 197 52 49 chr11 8245787 8246184 -142537369 - L1MEc LINE L1 -4438 1958 1552 1031 98 0 0 chr11 8246184 8246317 -142537236 + AluSq/x SINE Alu 1 133 -180 2347 116 8 25 chr11 8246419 8246772 -142536781 - THE1B LTR MaLR -17 347 1 1532 158 32 80 chr11 8247093 8247404 -142536149 - AluJb SINE Alu -16 296 1 219 69 0 0 chr11 8247405 8247434 -142536119 + (T)n Simple_repeat Simple_repeat 1 29 0 899 232 5 16 chr11 8248007 8248197 -142535356 + AluSc SINE Alu 114 301 -8 2057 133 76 25 chr11 8248227 8248581 -142534972 - THE1C LTR MaLR -3 372 1 1031 281 35 31 chr11 8248583 8249095 -142534458 - L1MEc LINE L1 -4856 1540 1027 2746 231 103 15 chr11 8249103 8249132 -142534421 - L1MEc LINE L1 -5553 843 818 1406 228 10 7 chr11 8249132 8249426 -142534127 - AluJo SINE Alu -13 299 5 2746 231 103 15 chr11 8249426 8250137 -142533416 - L1MEc LINE L1 -5578 818 38 312 70 0 0 chr11 8250176 8250219 -142533334 + (TG)n Simple_repeat Simple_repeat 2 44 0 348 24 0 0 chr11 8251479 8251520 -142532033 + (TG)n Simple_repeat Simple_repeat 2 42 0 2107 128 3 7 chr11 8251538 8251844 -142531709 - AluSq SINE Alu -8 305 1 2024 113 7 3 chr11 8252400 8252683 -142530870 + AluSc SINE Alu 26 309 0 1821 168 21 0 chr11 8253018 8253304 -142530249 + AluJo SINE Alu 1 292 -20 2405 74 0 7 chr11 8253452 8253750 -142529803 + AluSg SINE Alu 1 296 -14 710 175 0 0 chr11 8253786 8253889 -142529664 - FLAM_A SINE Alu -20 122 20 236 167 0 0 chr11 8254033 8254069 -142529484 - L2 LINE L2 -12 3260 3225 1278 140 154 89 chr11 8254399 8254692 -142528861 + AluJb SINE Alu 1 312 0 21 36 0 0 chr11 8254953 8254981 -142528572 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 8255397 8255421 -142528132 + GC_rich Low_complexity Low_complexity 1 24 0 333 0 0 0 chr11 8255867 8255904 -142527649 + (A)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr11 8256009 8256040 -142527513 + (A)n Simple_repeat Simple_repeat 1 31 0 289 178 47 122 chr11 8256135 8256242 -142527311 - HsTC2 DNA Tc2 -275 1623 1525 2190 122 3 7 chr11 8256274 8256577 -142526976 - AluSx SINE Alu -10 302 1 305 243 14 0 chr11 8256649 8256723 -142526830 - HsTC2 DNA Tc2 -1823 75 1 1021 256 128 45 chr11 8256742 8257095 -142526458 + L1ME3A LINE L1 5494 5901 -269 1300 216 21 31 chr11 8257095 8257382 -142526171 + AluJb SINE Alu 2 285 -17 1021 256 128 45 chr11 8257382 8257521 -142526032 + L1ME3A LINE L1 5901 6027 -143 2537 68 3 3 chr11 8257559 8257867 -142525686 + AluSp SINE Alu 1 308 -5 309 211 53 72 chr11 8257898 8258050 -142525503 + L1ME4a LINE L1 5932 6080 -41 225 320 0 26 chr11 8258074 8258152 -142525401 + MIR SINE MIR 24 99 -109 24 0 0 0 chr11 8258152 8258176 -142525377 + AT_rich Low_complexity Low_complexity 1 24 0 460 209 115 22 chr11 8258290 8258429 -142525124 + MIR SINE MIR 111 262 0 2331 85 0 3 chr11 8258737 8259032 -142524521 - AluY SINE Alu -17 294 1 453 192 58 19 chr11 8260025 8260129 -142523424 - L2 LINE L2 -18 3295 3188 4142 136 47 44 chr11 8260222 8260480 -142523073 + L1MB7 LINE L1 5430 5686 -498 2351 102 10 0 chr11 8260480 8260785 -142522768 + AluSq SINE Alu 1 308 -5 4142 136 47 44 chr11 8260785 8261279 -142522274 + L1MB7 LINE L1 5686 6184 0 622 247 54 40 chr11 8261440 8261577 -142521976 + MIR SINE MIR 1 135 -127 221 73 0 24 chr11 8261577 8261618 -142521935 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1482 185 11 21 chr11 8261618 8261905 -142521648 - AluJb SINE Alu -28 284 1 622 247 54 40 chr11 8261905 8261989 -142521564 + MIR SINE MIR 134 226 -36 467 235 87 0 chr11 8262021 8262136 -142521417 - L1ME4a LINE L1 -293 5828 5704 260 317 119 20 chr11 8262188 8262289 -142521264 + MIR3 SINE MIR 6 116 -92 3615 126 4 0 chr11 8262337 8262839 -142520714 + L1PA15 LINE L1 5656 6159 -6 545 158 18 0 chr11 8263256 8263370 -142520183 + CT-rich Low_complexity Low_complexity 2 117 0 910 154 0 7 chr11 8263372 8263515 -142520038 - AluSc SINE Alu -36 273 132 1682 93 0 9 chr11 8263515 8263741 -142519812 - AluSg/x SINE Alu -4 308 85 264 241 35 0 chr11 8264919 8264977 -142518576 - L1ME4a LINE L1 -470 5651 5592 2058 133 3 0 chr11 8265006 8265299 -142518254 - AluSx SINE Alu -18 294 1 31 26 0 0 chr11 8265306 8265344 -142518209 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 8265478 8265508 -142518045 + AT_rich Low_complexity Low_complexity 1 30 0 736 302 21 25 chr11 8265797 8266039 -142517514 + MIR SINE MIR 4 244 -18 259 243 89 66 chr11 8266514 8266648 -142516905 - MIR SINE MIR -61 147 52 1829 121 15 95 chr11 8266793 8267131 -142516422 - AluSx SINE Alu -1 311 1 2225 109 20 0 chr11 8267141 8267445 -142516108 - AluSx SINE Alu -2 310 1 513 290 37 19 chr11 8268275 8268437 -142515116 - MIR3 SINE MIR -15 193 29 485 302 81 51 chr11 8269031 8269266 -142514287 + MIR SINE MIR 11 252 -10 300 349 118 25 chr11 8270345 8270855 -142512698 + L2 LINE L2 1941 2497 -817 232 297 115 24 chr11 8272092 8272257 -142511296 - L3b LINE CR1 -232 1351 1172 316 308 81 38 chr11 8272837 8273022 -142510531 + MIR3 SINE MIR 16 208 0 2101 117 7 0 chr11 8274617 8274925 -142508628 - AluSx SINE Alu -2 310 1 335 236 14 0 chr11 8276394 8276466 -142507087 - L2 LINE L2 0 3272 3200 183 250 143 0 chr11 8277490 8277546 -142506007 + L3 LINE CR1 113 176 -1401 966 148 17 165 chr11 8277827 8278226 -142505327 + Tigger3(Golem) DNA MER2_type 6 3028 -1 2173 85 3 0 chr11 8278429 8278740 -142504813 - AluSp SINE Alu 0 312 1 923 240 91 33 chr11 8279170 8279412 -142504141 + MIR SINE MIR 7 262 0 193 307 23 11 chr11 8280995 8281083 -142502470 - MIR SINE MIR -116 146 58 385 304 86 58 chr11 8281279 8281592 -142501961 + L2 LINE L2 2899 3220 -52 3192 197 50 53 chr11 8282436 8283420 -142500133 - L1MC5 LINE L1 -430 7531 6633 1209 162 60 0 chr11 8283560 8283776 -142499777 - MSTB1 LTR MaLR 0 432 204 698 159 0 0 chr11 8283776 8283883 -142499670 + AluSq/x SINE Alu 2 108 -204 531 296 11 49 chr11 8284053 8284320 -142499233 - L1MEd LINE L1 -4862 1257 1001 345 338 88 44 chr11 8284403 8284699 -142498854 - MLT1K LTR MaLR -158 430 122 265 345 58 0 chr11 8284977 8285064 -142498489 + LTR67 LTR ERVL 99 190 -367 237 299 104 0 chr11 8285214 8285281 -142498272 - MIR SINE MIR -149 113 40 665 278 45 31 chr11 8285763 8285986 -142497567 - MIR SINE MIR -14 248 23 1358 156 28 86 chr11 8286006 8286332 -142497221 - AluJo SINE Alu -5 307 1 271 146 0 0 chr11 8286332 8286380 -142497173 - L1ME4a LINE L1 -1 6120 6073 2193 109 64 19 chr11 8286510 8286869 -142496684 - THE1C LTR MaLR 0 375 1 203 122 0 49 chr11 8286876 8286917 -142496636 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2140 100 0 0 chr11 8287128 8287419 -142496134 - AluSg SINE Alu -19 291 1 369 0 0 0 chr11 8287475 8287516 -142496037 + (TG)n Simple_repeat Simple_repeat 1 41 0 189 0 0 0 chr11 8287838 8287859 -142495694 + (TCC)n Simple_repeat Simple_repeat 2 22 0 2080 286 90 38 chr11 8287891 8288366 -142495187 - L1MC4a LINE L1 -743 5403 4954 2265 88 3 0 chr11 8288366 8288661 -142494892 - AluSx SINE Alu -16 296 1 2080 286 90 38 chr11 8288661 8290673 -142492880 - L1MC4a LINE L1 -1192 4954 3502 2282 89 0 13 chr11 8290850 8291163 -142492390 - AluSc SINE Alu 0 309 1 463 286 100 92 chr11 8291257 8291617 -142491936 - L2 LINE L2 0 3272 2910 2070 98 39 0 chr11 8291707 8291992 -142491561 + AluSq SINE Alu 1 296 -17 6107 193 81 54 chr11 8292031 8292632 -142490921 + MER45R DNA AcHobo 4 587 -994 1406 179 144 4 chr11 8292632 8292895 -142490658 - AluJo SINE Alu -2 300 1 6107 193 81 54 chr11 8292895 8293591 -142489962 + MER45R DNA AcHobo 587 1352 -229 1796 154 3 0 chr11 8293591 8293883 -142489670 - AluJo SINE Alu -19 293 1 6107 193 81 54 chr11 8293883 8294120 -142489433 + MER45R DNA AcHobo 1352 1581 0 396 265 66 73 chr11 8294233 8294339 -142489214 + L2 LINE L2 3134 3240 -32 578 300 107 0 chr11 8294339 8294572 -142488981 + MIR SINE MIR 4 261 -1 396 265 66 73 chr11 8294572 8294601 -142488952 + L2 LINE L2 3240 3268 -4 21 0 0 0 chr11 8294705 8294726 -142488827 + AT_rich Low_complexity Low_complexity 1 21 0 3828 160 47 27 chr11 8294842 8295469 -142488084 + L1MB3 LINE L1 5415 6061 -122 1913 95 29 49 chr11 8295469 8295775 -142487778 + AluSx SINE Alu 1 300 -12 3828 160 47 27 chr11 8295775 8295899 -142487654 + L1MB3 LINE L1 6061 6181 -2 235 232 14 14 chr11 8295920 8295989 -142487564 - MLT1L LTR MaLR -58 557 489 298 277 122 27 chr11 8296034 8296182 -142487371 - MLT1K LTR MaLR -230 358 197 251 242 148 66 chr11 8296151 8296333 -142487220 - MLT1L LTR MaLR -403 212 16 * 1801 103 3 80 chr11 8296488 8296826 -142486727 - AluSg SINE Alu 0 315 1 250 300 34 45 chr11 8296975 8297149 -142486404 - L2 LINE L2 -309 2963 2793 1876 234 44 67 chr11 8297166 8297415 -142486138 - L1ME3 LINE L1 -7 6155 5902 1678 167 0 42 chr11 8297415 8297581 -142485972 - AluJo SINE Alu -13 299 150 1816 154 0 10 chr11 8297581 8297886 -142485667 - AluSx SINE Alu -10 302 1 1678 167 0 42 chr11 8297886 8298030 -142485523 - AluJo SINE Alu -162 150 2 1876 234 44 67 chr11 8298030 8298055 -142485498 - L1ME3 LINE L1 -260 5902 5878 5364 96 31 8 chr11 8298055 8298817 -142484736 - LTR17 LTR ERV1 0 780 1 1876 234 44 67 chr11 8298817 8299156 -142484397 - L1ME3 LINE L1 -284 5878 5555 241 245 147 29 chr11 8299188 8299290 -142484263 - L2 LINE L2 -586 2728 2615 432 238 99 61 chr11 8299368 8299657 -142483896 - MLT1K LTR MaLR -230 358 41 301 325 107 19 chr11 8299709 8299915 -142483638 - L2 LINE L2 -741 2573 2350 180 0 0 0 chr11 8299963 8299983 -142483570 + (A)n Simple_repeat Simple_repeat 1 20 0 205 290 104 67 chr11 8301766 8302094 -142481459 - L2 LINE L2 -1040 2274 1935 259 293 0 0 chr11 8303399 8303457 -142480096 + (TG)n Simple_repeat Simple_repeat 2 59 0 31 26 0 0 chr11 8304464 8304502 -142479051 + GC_rich Low_complexity Low_complexity 1 38 0 24 63 0 16 chr11 8304625 8304644 -142478909 + GC_rich Low_complexity Low_complexity 1 19 -43 306 73 0 0 chr11 8304644 8304685 -142478868 + (CTG)n Simple_repeat Simple_repeat 1 41 0 24 63 0 16 chr11 8304685 8304728 -142478825 + GC_rich Low_complexity Low_complexity 19 62 0 1430 102 40 31 chr11 8305535 8305761 -142477792 + MER30 DNA MER1_type 3 230 0 414 298 131 27 chr11 8305852 8306267 -142477286 - L2 LINE L2 -22 3250 2795 328 267 106 37 chr11 8307114 8307275 -142476278 - MIR3 SINE MIR -9 199 28 1967 101 0 44 chr11 8307622 8307920 -142475633 - AluSq SINE Alu -24 289 5 244 219 31 78 chr11 8308061 8308125 -142475428 + L2 LINE L2 3251 3311 -2 195 42 0 0 chr11 8308580 8308604 -142474949 + (TC)n Simple_repeat Simple_repeat 2 25 0 243 286 67 0 chr11 8309039 8309158 -142474395 - HAL1b LINE L1 0 1348 1222 2409 83 0 0 chr11 8309256 8309558 -142473995 - AluSx SINE Alu -10 302 1 1807 138 3 14 chr11 8310007 8310298 -142473255 + AluJo SINE Alu 13 300 -12 2208 99 0 6 chr11 8310369 8310681 -142472872 - AluY SINE Alu -1 310 1 5684 191 87 69 chr11 8310703 8311079 -142472474 - L1MC4a LINE L1 0 7808 7440 1464 151 78 4 chr11 8311079 8311197 -142472356 + AluJo SINE Alu 1 109 -203 216 0 0 0 chr11 8311197 8311221 -142472332 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1464 151 78 4 chr11 8311221 8311373 -142472180 + AluJo SINE Alu 109 291 -21 5684 191 87 69 chr11 8311373 8312286 -142471267 - L1MC4a LINE L1 -368 7440 6475 2166 70 46 0 chr11 8312286 8312570 -142470983 + AluSg SINE Alu 1 297 -13 5684 191 87 69 chr11 8312570 8313118 -142470435 - L1MC4a LINE L1 -1333 6475 5938 2754 192 33 3 chr11 8313137 8313716 -142469837 - L1MB7 LINE L1 -9 6175 5580 2726 171 14 41 chr11 8313720 8314433 -142469120 + L1MA7 LINE L1 5084 5776 -407 658 154 0 19 chr11 8314433 8314564 -142468989 - FLAM_A SINE Alu 0 142 20 2726 171 14 41 chr11 8314564 8314907 -142468646 + L1MA7 LINE L1 5776 6127 -56 3074 185 35 47 chr11 8314926 8315443 -142468110 - L1MB7 LINE L1 -597 5587 5090 1557 153 22 7 chr11 8315443 8315718 -142467835 - AluJo SINE Alu 0 312 34 3074 185 35 47 chr11 8315718 8316188 -142467365 - L1MB7 LINE L1 -1094 5090 4616 1433 222 28 25 chr11 8316203 8316559 -142466994 - L1MC4a LINE L1 -1854 5954 5598 525 258 155 7 chr11 8318798 8318953 -142464600 + MER5B DNA MER1_type 1 178 0 351 217 217 17 chr11 8319596 8319711 -142463842 - L2 LINE L2 -1 3312 3175 229 345 19 49 chr11 8319828 8320095 -142463458 + L2 LINE L2 2045 2303 -1011 268 340 125 71 chr11 8320587 8320894 -142462659 + L2 LINE L2 2840 3176 -96 2048 112 31 0 chr11 8320894 8321188 -142462365 - AluSx SINE Alu -9 303 1 268 340 125 71 chr11 8321188 8321289 -142462264 + L2 LINE L2 3176 3270 -2 548 275 99 23 chr11 8321723 8321894 -142461659 + MIR3 SINE MIR 19 202 -6 337 269 92 8 chr11 8322232 8322362 -142461191 - HAL1 LINE L1 -2366 141 1 2254 68 0 0 chr11 8323615 8323937 -142459616 + AluY SINE Alu 2 323 0 24 0 0 0 chr11 8324085 8324109 -142459444 + AT_rich Low_complexity Low_complexity 1 24 0 181 302 19 19 chr11 8324139 8324192 -142459361 + L2 LINE L2 1145 1197 -2117 304 103 35 0 chr11 8325935 8325993 -142457560 + CT-rich Low_complexity Low_complexity 2 61 0 563 274 101 25 chr11 8327258 8327495 -142456058 - MIR SINE MIR -1 261 7 201 308 133 7 chr11 8327586 8327729 -142455824 + L2 LINE L2 3109 3269 -3 25 105 0 0 chr11 8328335 8328430 -142455123 + AT_rich Low_complexity Low_complexity 1 95 0 212 234 64 0 chr11 8329179 8329226 -142454327 + L2 LINE L2 3259 3308 -5 383 298 62 58 chr11 8330438 8330566 -142452987 + MIR SINE MIR 40 171 -91 1900 127 57 46 chr11 8330566 8330936 -142452617 - THE1C LTR MaLR -1 374 1 383 298 62 58 chr11 8330936 8331015 -142452538 + MIR SINE MIR 171 248 -14 4437 230 112 104 chr11 8331457 8331625 -142451928 - HAL1 LINE L1 -50 2457 2292 1795 164 3 6 chr11 8331625 8331937 -142451616 - AluJb SINE Alu -1 311 1 4437 230 112 104 chr11 8331937 8332854 -142450699 - HAL1 LINE L1 -215 2292 1384 1904 141 3 20 chr11 8332854 8333160 -142450393 - AluSx SINE Alu -8 304 4 4437 230 112 104 chr11 8333160 8334501 -142449052 - HAL1 LINE L1 -1123 1384 10 1932 139 0 7 chr11 8334535 8334844 -142448709 - AluJb SINE Alu -2 310 4 1909 115 0 57 chr11 8337301 8337496 -142446057 - AluSx SINE Alu 0 312 142 2393 84 0 0 chr11 8337496 8337806 -142445747 - AluSg SINE Alu 0 310 1 1909 115 0 57 chr11 8337806 8337941 -142445612 - AluSx SINE Alu -170 142 1 1881 127 3 45 chr11 8338290 8338604 -142444949 + AluSx SINE Alu 1 301 -11 2352 78 7 0 chr11 8341089 8341398 -142442155 + AluSp SINE Alu 2 312 -1 207 0 0 0 chr11 8341398 8341421 -142442132 + (TA)n Simple_repeat Simple_repeat 1 23 0 2236 106 0 0 chr11 8341826 8342129 -142441424 + AluSq SINE Alu 3 305 -8 180 305 0 17 chr11 8343549 8343608 -142439945 - L2 LINE L2 -7 3265 3208 897 252 74 0 chr11 8343959 8344189 -142439364 - MIR SINE MIR -14 248 2 744 236 13 41 chr11 8344301 8344525 -142439028 - MIR SINE MIR -3 259 46 726 44 0 0 chr11 8344843 8344933 -142438620 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 1615 91 0 18 chr11 8344934 8345155 -142438398 - AluSg/x SINE Alu -15 295 79 671 229 120 26 chr11 8346226 8346492 -142437061 + L1ME4a LINE L1 5767 6057 -64 1801 154 0 7 chr11 8346578 8346870 -142436683 + AluJb SINE Alu 9 298 -14 856 133 108 0 chr11 8346892 8347050 -142436503 + L1MD3 LINE L1 7811 7985 -10 334 325 79 0 chr11 8348915 8349041 -142434512 + L2 LINE L2 3136 3271 -1 2277 83 0 10 chr11 8349808 8350121 -142433432 + AluSg SINE Alu 1 310 0 363 73 0 0 chr11 8350459 8350514 -142433039 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr11 8350724 8350745 -142432808 + AT_rich Low_complexity Low_complexity 1 21 0 991 255 140 46 chr11 8350922 8351545 -142432008 - L2 LINE L2 -6 3307 2660 1504 161 79 4 chr11 8351581 8351860 -142431693 + AluJo SINE Alu 1 300 -12 686 287 99 28 chr11 8351944 8352441 -142431112 - L1MC4a LINE L1 -327 5794 5297 304 127 48 0 chr11 8352805 8352868 -142430685 + (TATG)n Simple_repeat Simple_repeat 2 67 0 336 339 120 16 chr11 8353037 8353353 -142430200 - L2 LINE L2 -527 2787 2439 1577 273 102 30 chr11 8354062 8354805 -142428748 + L2 LINE L2 1458 2254 -1060 598 280 5 16 chr11 8354979 8355167 -142428386 - Charlie7 DNA MER1_type -1927 685 500 1375 188 4 0 chr11 8355167 8355396 -142428157 + Tigger7 DNA MER2_type 1 230 -2257 301 226 0 5 chr11 8355431 8355516 -142428037 + Tigger7 DNA MER2_type 148 230 -321 278 233 0 0 chr11 8355504 8355564 -142427989 + Tigger7 DNA MER2_type 159 218 -2269 * 298 222 0 0 chr11 8355564 8355636 -142427917 + Tigger7 DNA MER2_type 159 230 -503 * 1512 153 45 9 chr11 8355611 8355971 -142427582 + Tigger7 DNA MER2_type 148 2555 -32 482 303 73 33 chr11 8356072 8356551 -142427002 - Charlie7 DNA MER1_type -2110 502 5 1168 290 51 17 chr11 8356565 8356975 -142426578 + L2 LINE L2 2292 2715 -599 1042 154 192 0 chr11 8356991 8357199 -142426354 + AluJb SINE Alu 35 282 -30 306 0 0 0 chr11 8357208 8357242 -142426311 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 439 333 77 6 chr11 8357242 8357425 -142426128 + L2 LINE L2 2705 2900 -414 1268 171 103 21 chr11 8357454 8357755 -142425798 - AluJo SINE Alu 0 312 1 709 244 83 64 chr11 8357759 8358071 -142425482 + L2 LINE L2 2996 3313 0 26 0 0 0 chr11 8359897 8359923 -142423630 + AT_rich Low_complexity Low_complexity 1 26 0 1936 131 0 7 chr11 8359925 8360216 -142423337 + AluSq SINE Alu 1 289 -24 741 201 81 17 chr11 8360755 8360929 -142422624 + MIR SINE MIR 76 260 -2 1861 115 3 55 chr11 8361104 8361416 -142422137 - AluSx SINE Alu -16 296 1 677 199 22 44 chr11 8361542 8361678 -142421875 - FLAM_A SINE Alu 0 133 1 292 286 41 20 chr11 8361811 8361909 -142421644 + L2 LINE L2 2971 3070 -202 201 272 44 105 chr11 8362070 8362184 -142421369 - L2 LINE L2 -94 3178 3072 286 349 28 9 chr11 8362589 8362698 -142420855 + L2 LINE L2 3202 3312 -1 2073 104 3 0 chr11 8363375 8363663 -142419890 - AluSx SINE Alu -23 289 1 1251 151 67 77 chr11 8363689 8363987 -142419566 + AluJb SINE Alu 1 295 -17 295 249 41 38 chr11 8364019 8364200 -142419353 - MIR SINE MIR -1 261 28 1718 159 21 3 chr11 8364474 8364764 -142418789 - AluJo SINE Alu -17 295 1 182 308 48 39 chr11 8366511 8366615 -142416938 - L2 LINE L2 -10 3262 3158 548 283 105 54 chr11 8367112 8367426 -142416127 - L3 LINE CR1 -37 1540 1211 213 304 0 0 chr11 8367535 8367581 -142415972 + L2 LINE L2 3149 3194 -78 1257 156 93 30 chr11 8367780 8368049 -142415504 + AluJo SINE Alu 1 286 -26 25 51 0 0 chr11 8368049 8368088 -142415465 + AT_rich Low_complexity Low_complexity 1 39 0 814 261 26 34 chr11 8369207 8369392 -142414161 + MIR SINE MIR 31 216 -46 1225 159 121 42 chr11 8369392 8369691 -142413862 + AluJb SINE Alu 1 320 0 814 261 26 34 chr11 8369691 8369738 -142413815 + MIR SINE MIR 216 262 0 482 291 199 0 chr11 8369740 8369946 -142413607 + MIR SINE MIR 12 258 -4 524 276 191 0 chr11 8370629 8370839 -142412714 + MIR SINE MIR 3 252 -10 447 284 47 27 chr11 8370877 8371025 -142412528 + MIR3 SINE MIR 37 187 -21 338 311 22 0 chr11 8371136 8371226 -142412327 - L2 LINE L2 -1 3271 3180 605 280 71 22 chr11 8372245 8372470 -142411083 - MIR SINE MIR -8 254 19 3123 216 54 4 chr11 8373273 8374036 -142409517 - L2 LINE L2 -1115 2199 1399 1397 246 126 28 chr11 8377057 8377897 -142405656 - L2 LINE L2 -16 3297 2373 1430 245 130 25 chr11 8377908 8378396 -142405157 + MLT1G1 LTR MaLR 10 588 -7 540 249 138 44 chr11 8378405 8378630 -142404923 - L2 LINE L2 -941 2373 2128 694 236 79 47 chr11 8379892 8380146 -142403407 - L2 LINE L2 0 3313 3052 2135 112 0 13 chr11 8381361 8381674 -142401879 + AluSx SINE Alu 1 309 -3 1225 207 0 0 chr11 8381883 8382100 -142401453 + MIR SINE MIR 45 261 -1 747 260 25 13 chr11 8382835 8383070 -142400483 + L1MC4 LINE L1 7298 7535 -507 4347 170 35 43 chr11 8383087 8383295 -142400258 + L1MB8 LINE L1 5129 5337 -841 2387 82 0 0 chr11 8383295 8383600 -142399953 + AluY SINE Alu 1 305 -6 4347 170 35 43 chr11 8383600 8384428 -142399125 + L1MB8 LINE L1 5337 6161 -17 1198 228 49 9 chr11 8384527 8384856 -142398697 + L1MC4 LINE L1 7558 7899 -143 246 62 0 0 chr11 8384856 8384888 -142398665 + (TG)n Simple_repeat Simple_repeat 2 33 0 660 138 9 158 chr11 8384906 8385103 -142398450 + L1M4 LINE L1 5153 5260 -886 7095 57 12 0 chr11 8385103 8386715 -142396838 + L1PA7 LINE L1 4530 6153 -1 660 138 9 158 chr11 8386715 8386829 -142396724 + L1M4 LINE L1 5260 5389 -757 345 157 41 99 chr11 8386826 8386947 -142396606 + L1MC4 LINE L1 7928 8041 -1 * 405 227 11 0 chr11 8387512 8387600 -142395953 - MIR SINE MIR -128 134 46 678 283 143 0 chr11 8388272 8388502 -142395051 + MLT1K LTR MaLR 303 565 -23 615 277 51 11 chr11 8388897 8389074 -142394479 - MIR SINE MIR -74 188 5 349 225 0 14 chr11 8389195 8389266 -142394287 - MIR3 SINE MIR -52 156 87 211 289 172 31 chr11 8390299 8390427 -142393126 - L2 LINE L2 -3 3310 3165 451 288 78 38 chr11 8390492 8390889 -142392664 - L2 LINE L2 -193 3079 2624 509 268 24 0 chr11 8390903 8391030 -142392523 + MIR SINE MIR 133 262 0 24 0 0 0 chr11 8392030 8392054 -142391499 + GC_rich Low_complexity Low_complexity 1 24 0 192 77 0 0 chr11 8393494 8393520 -142390033 + (T)n Simple_repeat Simple_repeat 1 26 0 200 226 0 19 chr11 8393653 8393706 -142389847 + T-rich Low_complexity Low_complexity 2 53 0 1684 185 7 0 chr11 8395053 8395345 -142388208 - AluJb SINE Alu -18 294 1 182 309 74 0 chr11 8395893 8395974 -142387579 - L2 LINE L2 -12 3260 3174 1892 253 34 86 chr11 8396020 8397030 -142386523 - L2 LINE L2 -1 3312 2363 2329 63 0 31 chr11 8397030 8397348 -142386205 + AluY SINE Alu 1 308 -3 1892 253 34 86 chr11 8397348 8397420 -142386133 - L2 LINE L2 -950 2363 2289 280 256 26 13 chr11 8397637 8397715 -142385838 - L3 LINE CR1 -11 1566 1488 2034 90 73 0 chr11 8398746 8399034 -142384519 - AluSc SINE Alu 0 309 1 1565 144 16 88 chr11 8399037 8399356 -142384197 - AluJo SINE Alu -16 296 1 2022 145 3 0 chr11 8399548 8399859 -142383694 + AluSx SINE Alu 1 312 0 1114 281 82 36 chr11 8399897 8400694 -142382859 - L2 LINE L2 -46 3267 2443 188 283 50 0 chr11 8400778 8400838 -142382715 - MIR SINE MIR -132 130 68 650 302 152 15 chr11 8401036 8401437 -142382116 - L2 LINE L2 -876 2438 1983 305 244 7 0 chr11 8401441 8401511 -142382042 + L1PA8A LINE L1 5697 5770 -351 558 267 144 65 chr11 8401674 8402112 -142381441 + MLT1L LTR MaLR 3 581 -34 44 35 0 0 chr11 8402142 8402200 -142381353 + AT_rich Low_complexity Low_complexity 1 58 0 532 265 105 52 chr11 8402200 8402297 -142381256 - HAL1 LINE L1 -140 2367 2277 2023 139 0 0 chr11 8402297 8402598 -142380955 - AluJb SINE Alu -11 301 1 532 265 105 52 chr11 8402598 8402824 -142380729 - HAL1 LINE L1 -230 2277 2027 1860 222 122 36 chr11 8402846 8403199 -142380354 - HAL1 LINE L1 -540 1967 1646 2118 88 7 17 chr11 8403199 8403496 -142380057 - AluSg SINE Alu -16 294 1 1860 222 122 36 chr11 8403496 8403751 -142379802 - HAL1 LINE L1 -861 1646 1307 1075 265 48 46 chr11 8403983 8404420 -142379133 - MLT1J1 LTR MaLR -4 442 5 424 261 72 50 chr11 8404453 8404633 -142378920 - HAL1 LINE L1 -2291 216 33 327 272 34 82 chr11 8404744 8404814 -142378739 + L1MC4a LINE L1 5785 5846 -1962 2320 69 0 0 chr11 8404814 8405103 -142378450 - AluY SINE Alu -20 291 3 327 272 34 82 chr11 8405103 8405179 -142378374 + L1MC4a LINE L1 5846 5924 -1884 1965 116 0 20 chr11 8405294 8405621 -142377932 - AluSx SINE Alu 0 321 1 234 321 23 30 chr11 8405703 8405834 -142377719 - L2 LINE L2 -1317 1997 1868 1794 153 7 3 chr11 8409088 8409388 -142374165 - AluJb SINE Alu -11 301 1 2587 43 0 0 chr11 8410659 8410962 -142372591 + AluY SINE Alu 1 303 -8 2314 73 3 0 chr11 8410976 8411277 -142372276 + AluSp SINE Alu 1 302 -11 206 320 13 26 chr11 8411472 8411550 -142372003 + MIR SINE MIR 31 107 -155 2343 90 0 0 chr11 8411564 8411875 -142371678 + AluSq SINE Alu 1 311 -2 279 272 184 8 chr11 8413088 8413213 -142370340 - MIR3 SINE MIR -32 176 30 2598 59 3 0 chr11 8414633 8414938 -142368615 - AluY SINE Alu -5 306 1 318 297 189 0 chr11 8415680 8415828 -142367725 + MIR SINE MIR 68 243 -19 1986 115 32 38 chr11 8415905 8416219 -142367334 + AluJo SINE Alu 1 312 0 182 175 0 25 chr11 8416483 8416523 -142367030 - MIR SINE MIR -137 125 87 390 21 0 0 chr11 8416559 8416606 -142366947 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6345 76 19 45 chr11 8416606 8417566 -142365987 - SVA Other Other -19 1367 433 1063 90 15 25 chr11 8417580 8417781 -142365772 - SVA Other Other -592 794 596 5819 68 20 65 chr11 8417813 8418717 -142364836 - SVA Other Other -520 866 4 205 283 68 88 chr11 8418928 8419016 -142364537 + L3 LINE CR1 730 818 -759 2359 87 0 0 chr11 8419016 8419304 -142364249 + AluY SINE Alu 1 288 -23 205 283 68 88 chr11 8419304 8419420 -142364133 + L3 LINE CR1 818 930 -647 1616 140 0 4 chr11 8419808 8420043 -142363510 + AluJo SINE Alu 28 261 -51 2170 112 0 0 chr11 8420408 8420693 -142362860 - AluSx SINE Alu -19 293 9 216 154 0 0 chr11 8421454 8421506 -142362047 + (TA)n Simple_repeat Simple_repeat 1 52 0 1993 110 0 28 chr11 8421513 8421795 -142361758 - AluSx SINE Alu -25 287 14 2112 139 0 3 chr11 8422225 8422526 -142361027 + AluSx SINE Alu 1 300 -12 664 221 62 87 chr11 8422544 8422866 -142360687 + HAL1 LINE L1 46 359 -2148 198 103 0 0 chr11 8422896 8422925 -142360628 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 2067 140 3 0 chr11 8423024 8423316 -142360237 - AluJb SINE Alu -19 293 1 2203 260 151 15 chr11 8423372 8424215 -142359338 + L2 LINE L2 355 1311 -2003 722 215 164 7 chr11 8424215 8424488 -142359065 - MER58B DNA MER1_type 0 341 8 394 194 342 0 chr11 8424495 8424650 -142358903 + L2 LINE L2 1304 1511 -1803 399 207 236 0 chr11 8424664 8424804 -142358749 + L2 LINE L2 3141 3313 0 2176 89 62 3 chr11 8424870 8425161 -142358392 - AluSg SINE Alu -2 308 1 477 212 84 96 chr11 8425239 8425489 -142358064 + MER112 DNA MER1_type 8 254 -6 1999 94 67 0 chr11 8425533 8425800 -142357753 - AluSx SINE Alu -17 295 11 549 264 164 9 chr11 8425812 8426032 -142357521 + HAL1 LINE L1 785 1038 -1469 1991 149 88 24 chr11 8426059 8426468 -142357085 + L1MA7 LINE L1 5856 6290 -1 30 27 0 0 chr11 8426470 8426507 -142357046 + AT_rich Low_complexity Low_complexity 1 37 0 293 215 156 15 chr11 8426516 8426651 -142356902 + HAL1 LINE L1 1051 1204 -1303 * 570 252 67 50 chr11 8426642 8426880 -142356673 + HAL1 LINE L1 1823 2064 -443 713 247 100 39 chr11 8426913 8427273 -142356280 + HAL1 LINE L1 2126 2507 0 2313 93 3 10 chr11 8427335 8427647 -142355906 - AluSq SINE Alu -1 312 3 2043 98 0 0 chr11 8427647 8427902 -142355651 - AluSq SINE Alu -58 255 1 229 143 0 89 chr11 8429027 8429083 -142354470 - L2 LINE L2 -78 3235 3185 911 134 139 9 chr11 8429493 8429716 -142353837 - MER33 DNA MER1_type -48 276 25 2012 67 6 103 chr11 8430269 8430599 -142352954 + AluSx SINE Alu 1 298 -14 270 221 52 13 chr11 8430647 8430724 -142352829 - MIR3 SINE MIR -52 156 77 268 331 57 24 chr11 8432920 8433044 -142350509 + L2 LINE L2 3137 3264 -8 2434 66 0 10 chr11 8435056 8435359 -142348194 + AluSx SINE Alu 1 300 -12 2208 132 3 0 chr11 8435599 8435910 -142347643 + AluSx SINE Alu 1 312 0 1383 189 28 0 chr11 8436628 8436876 -142346677 - AluJo SINE Alu -57 255 1 2256 104 7 0 chr11 8437168 8437466 -142346087 + AluSp SINE Alu 1 300 -13 2309 92 3 3 chr11 8437565 8437857 -142345696 - AluSg SINE Alu -18 292 1 2495 72 0 7 chr11 8437857 8438162 -142345391 - AluSp SINE Alu -10 303 1 1549 117 44 0 chr11 8438170 8438419 -142345134 - L1MA5A LINE L1 -5 6292 6033 1749 183 0 7 chr11 8439017 8439323 -142344230 + AluJo SINE Alu 1 304 -8 180 111 0 0 chr11 8439863 8439890 -142343663 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3703 103 13 26 chr11 8440243 8440777 -142342776 + MER1A DNA MER1_type 1 527 0 2444 88 0 0 chr11 8440871 8441166 -142342387 - AluSg SINE Alu -15 295 1 2733 222 88 9 chr11 8441339 8441448 -142342105 - L1MB7 LINE L1 -9 6175 6076 2082 112 53 0 chr11 8441448 8441733 -142341820 + AluSx SINE Alu 1 300 -12 2733 222 88 9 chr11 8441733 8442295 -142341258 - L1MB7 LINE L1 -108 6076 5451 1869 163 7 3 chr11 8443326 8443626 -142339927 + AluJo SINE Alu 1 301 -11 216 67 0 0 chr11 8443727 8443757 -142339796 + (TA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr11 8443759 8443785 -142339768 + (TG)n Simple_repeat Simple_repeat 2 27 0 2240 100 0 10 chr11 8443911 8444211 -142339342 - AluSx SINE Alu -15 297 1 2410 68 0 23 chr11 8444256 8444565 -142338988 - AluY SINE Alu -9 302 1 25 0 0 0 chr11 8444582 8444607 -142338946 + AT_rich Low_complexity Low_complexity 1 25 0 957 143 14 0 chr11 8445998 8446145 -142337408 + FAM SINE Alu 27 175 -10 352 161 0 0 chr11 8446148 8446204 -142337349 + FLAM SINE Alu 76 131 -2 27 62 0 0 chr11 8449099 8449147 -142334406 + AT_rich Low_complexity Low_complexity 1 48 0 5081 190 55 30 chr11 8449149 8449680 -142333873 + L1MC1 LINE L1 3788 4305 -1841 983 166 12 12 chr11 8449680 8449843 -142333710 + FAM SINE Alu 2 164 -11 5081 190 55 30 chr11 8449843 8450557 -142332996 + L1MC1 LINE L1 4305 5063 -1083 5878 138 58 18 chr11 8450571 8451197 -142332356 + L1MC1 LINE L1 5237 5921 -412 2582 63 0 16 chr11 8451197 8451513 -142332040 + AluY SINE Alu 1 311 0 5878 138 58 18 chr11 8451513 8451932 -142331621 + L1MC1 LINE L1 5921 6322 -11 2129 115 14 0 chr11 8451935 8452222 -142331331 + AluSx SINE Alu 1 291 -21 1158 164 200 0 chr11 8452244 8452469 -142331084 + AluJb SINE Alu 21 290 -22 21 0 0 0 chr11 8452490 8452511 -142331042 + AT_rich Low_complexity Low_complexity 1 21 0 322 165 141 47 chr11 8452566 8452651 -142330902 + HY4 scRNA scRNA 1 93 0 324 228 331 7 chr11 8453234 8453379 -142330174 + MIR3 SINE MIR 15 206 -2 324 0 0 0 chr11 8454665 8454701 -142328852 + (TG)n Simple_repeat Simple_repeat 2 37 0 1672 217 6 9 chr11 8455018 8455363 -142328190 + MER2 DNA MER2_type 1 344 0 384 263 68 8 chr11 8455371 8455504 -142328049 - MIR SINE MIR -71 191 51 1417 216 57 3 chr11 8455767 8456063 -142327490 + AluJo SINE Alu 1 312 0 1198 229 138 52 chr11 8456343 8456490 -142327063 + MER113 DNA MER1_type? 1 134 -387 2327 88 0 7 chr11 8456490 8456787 -142326766 + AluSg SINE Alu 1 295 -15 1198 229 138 52 chr11 8456787 8456923 -142326630 + MER113 DNA MER1_type? 134 257 -264 1826 168 3 7 chr11 8456923 8457232 -142326321 + AluJb SINE Alu 1 308 -4 1198 229 138 52 chr11 8457232 8457389 -142326164 + MER113 DNA MER1_type? 257 480 -41 2360 86 0 7 chr11 8457480 8457782 -142325771 + AluSc SINE Alu 1 300 -9 2366 82 3 0 chr11 8458994 8459288 -142324265 + AluY SINE Alu 1 295 -16 2332 52 4 0 chr11 8459288 8459559 -142323994 + AluY SINE Alu 1 273 -38 200 329 25 13 chr11 8459592 8459671 -142323882 + MIR SINE MIR 108 187 -75 2178 107 3 10 chr11 8459712 8460002 -142323551 - AluSg SINE Alu -22 288 1 859 144 0 0 chr11 8460009 8460134 -142323419 - FLAM_C SINE Alu -18 125 1 323 300 67 25 chr11 8460532 8460652 -142322901 + L2 LINE L2 3137 3261 -11 1788 153 8 67 chr11 8460861 8461220 -142322333 + LTR64 LTR ERVK 1 338 -220 2229 88 3 0 chr11 8461396 8461701 -142321852 - AluY SINE Alu -5 306 1 516 275 141 58 chr11 8461808 8461961 -142321592 - MLT1K LTR MaLR -3 585 446 571 207 83 0 chr11 8461961 8462082 -142321471 + FLAM_A SINE Alu 1 131 -2 516 275 141 58 chr11 8462082 8462375 -142321178 - MLT1K LTR MaLR -142 446 102 1940 114 6 46 chr11 8464199 8464339 -142319214 + AluSx SINE Alu 1 145 -167 2092 98 0 14 chr11 8464339 8464635 -142318918 + AluSg1 SINE Alu 1 292 -17 1940 114 6 46 chr11 8464635 8464818 -142318735 + AluSx SINE Alu 145 311 -1 730 142 7 71 chr11 8465139 8465280 -142318273 + MER52A LTR ERV1 554 685 -1070 2328 79 3 0 chr11 8465578 8465881 -142317672 - AluSc SINE Alu -5 304 1 1792 156 3 3 chr11 8465891 8466180 -142317373 - AluSx SINE Alu -12 300 12 2295 175 66 2 chr11 8466808 8467231 -142316322 - MLT1C LTR MaLR 0 467 18 709 180 0 23 chr11 8467232 8467360 -142316193 + FLAM_A SINE Alu 5 129 -4 513 155 194 0 chr11 8467362 8467465 -142316088 + AluJo/FRAM SINE Alu 136 258 -54 1865 145 7 0 chr11 8467819 8468116 -142315437 + AluSq SINE Alu 1 299 -14 901 102 58 0 chr11 8469715 8469852 -142313701 + AluJb SINE Alu 168 312 0 1941 109 4 4 chr11 8471469 8471773 -142311780 - AluSx SINE Alu 0 314 11 1528 119 96 41 chr11 8472123 8472416 -142311137 + AluSx SINE Alu 2 310 -2 1099 136 0 0 chr11 8473637 8473799 -142309754 - FRAM SINE Alu -13 163 2 1570 160 12 58 chr11 8474086 8474411 -142309142 + AluJo SINE Alu 1 310 -2 1691 171 3 24 chr11 8475189 8475487 -142308066 - AluJo SINE Alu -20 292 1 2308 71 7 3 chr11 8476090 8476399 -142307154 + AluY SINE Alu 1 310 -1 310 289 164 19 chr11 8478938 8479042 -142304511 + MIR SINE MIR 25 143 -119 1949 112 13 39 chr11 8479771 8479907 -142303646 + AluSx SINE Alu 1 139 -173 2223 84 10 10 chr11 8479907 8480218 -142303335 + AluY SINE Alu 1 311 0 1949 112 13 39 chr11 8480218 8480386 -142303167 + AluSx SINE Alu 139 297 -15 1456 137 9 4 chr11 8480449 8480676 -142302877 + AluJo SINE Alu 85 312 0 304 197 61 0 chr11 8480730 8480796 -142302757 - FAM SINE Alu -17 158 89 1982 126 0 23 chr11 8482538 8482847 -142300706 + AluSx SINE Alu 1 302 -10 2356 63 0 25 chr11 8482847 8483166 -142300387 + AluY SINE Alu 1 311 0 380 226 165 9 chr11 8483211 8483326 -142300227 + L2 LINE L2 3177 3309 -4 2438 36 7 3 chr11 8483807 8484109 -142299444 - AluSp SINE Alu -10 303 1 22 0 0 0 chr11 8484109 8484131 -142299422 + AT_rich Low_complexity Low_complexity 1 22 0 222 45 0 106 chr11 8485047 8485113 -142298440 + (CGGGGG)n Simple_repeat Simple_repeat 2 60 0 252 0 0 0 chr11 8485295 8485323 -142298230 + (CA)n Simple_repeat Simple_repeat 2 29 0 1026 144 20 5 chr11 8485359 8485554 -142297999 + AluSg/x SINE Alu 95 292 -20 380 141 0 14 chr11 8486487 8486558 -142296995 + (TTCTCC)n Simple_repeat Simple_repeat 4 73 0 702 155 7 49 chr11 8486558 8486700 -142296853 - AluJ SINE Alu 0 312 177 404 121 0 15 chr11 8486694 8486760 -142296793 - AluJ SINE Alu -161 151 87 * 319 235 20 29 chr11 8486760 8486862 -142296691 + MIR SINE MIR 65 165 -97 228 325 48 32 chr11 8486858 8486984 -142296569 + L2 LINE L2 3186 3313 0 * 357 263 21 0 chr11 8486982 8487077 -142296476 + MIR SINE MIR 166 262 0 190 167 67 50 chr11 8487076 8487136 -142296417 - L2 LINE L2 -33 3280 3220 * 188 372 21 21 chr11 8487254 8487348 -142296205 - L2 LINE L2 -211 3061 2968 517 211 28 18 chr11 8487432 8487541 -142296012 + MIR SINE MIR 153 262 0 294 298 133 40 chr11 8487756 8487907 -142295646 + L2 LINE L2 3099 3263 -9 1652 161 0 21 chr11 8487970 8488261 -142295292 + AluJo SINE Alu 9 293 -19 26 64 0 0 chr11 8488432 8488479 -142295074 + AT_rich Low_complexity Low_complexity 1 47 0 2300 76 20 0 chr11 8489464 8489765 -142293788 + AluY SINE Alu 1 307 -4 2137 211 41 12 chr11 8489770 8490282 -142293271 - L1MB7 LINE L1 -15 6169 5643 6040 220 76 43 chr11 8490305 8492047 -142291506 - L1MB7 LINE L1 -901 5245 3431 1471 145 0 38 chr11 8492047 8492309 -142291244 - AluJb SINE Alu -5 307 56 6040 220 76 43 chr11 8492309 8492524 -142291029 - L1MB7 LINE L1 -2715 3431 3224 1335 126 9 23 chr11 8492533 8492748 -142290805 - AluSg/x SINE Alu -16 294 83 616 238 77 28 chr11 8492763 8492804 -142290749 + L1MEc LINE L1 2181 2219 -3996 1912 90 0 0 chr11 8492804 8493048 -142290505 + AluSc SINE Alu 1 244 -65 616 238 77 28 chr11 8493048 8493254 -142290299 + L1MEc LINE L1 2219 2399 -3816 646 178 0 0 chr11 8493254 8493361 -142290192 + MLT1D LTR MaLR 355 461 -44 3404 196 30 54 chr11 8493373 8493620 -142289933 + L1MEc LINE L1 2384 2636 -3579 2235 102 0 0 chr11 8493620 8493915 -142289638 - AluSg SINE Alu -15 295 1 3404 196 30 54 chr11 8493915 8494431 -142289122 + L1MEc LINE L1 2636 3122 -3093 2363 97 0 0 chr11 8494431 8494741 -142288812 + AluSx SINE Alu 1 310 -2 3404 196 30 54 chr11 8494741 8494913 -142288640 + L1MEc LINE L1 3122 3297 -2918 632 128 0 0 chr11 8494916 8495002 -142288551 + AluS SINE Alu 2 87 -226 2029 105 0 7 chr11 8495004 8495281 -142288272 - AluSq SINE Alu -38 275 1 2839 243 63 39 chr11 8495293 8495347 -142288206 - L1M4c LINE L1 -4320 2818 2767 1786 171 0 10 chr11 8495347 8495516 -142288037 - AluJb SINE Alu -10 302 136 2142 85 7 30 chr11 8495516 8495821 -142287732 - AluY SINE Alu -13 298 1 1786 171 0 10 chr11 8495821 8495956 -142287597 - AluJb SINE Alu -176 136 1 2839 243 63 39 chr11 8495956 8497180 -142286373 - L1M4c LINE L1 -4371 2767 1364 828 234 114 0 chr11 8497180 8497381 -142286172 - MER58A DNA MER1_type 0 224 1 2839 243 63 39 chr11 8497381 8497543 -142286010 - L1M4c LINE L1 -5774 1364 1207 264 59 0 0 chr11 8497566 8497600 -142285953 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 617 214 0 0 chr11 8497604 8497716 -142285837 - FLAM_A SINE Alu -18 115 4 388 268 24 16 chr11 8497768 8497891 -142285662 - L1M4c LINE L1 -5667 1188 1065 1127 250 54 11 chr11 8497903 8498183 -142285370 + AluJo SINE Alu 13 304 -8 340 351 80 12 chr11 8498186 8498437 -142285116 - L1M4c LINE L1 -5792 1063 796 246 256 78 124 chr11 8498556 8498697 -142284856 - L1M4c LINE L1 -6613 246 100 1865 102 3 67 chr11 8498697 8499010 -142284543 - AluSx SINE Alu -19 293 1 246 256 78 124 chr11 8499010 8499053 -142284500 - L1M4c LINE L1 -6759 100 57 2343 143 6 0 chr11 8499053 8499417 -142284136 - MER47A DNA MER2_type 0 366 1 246 256 78 124 chr11 8499417 8499489 -142284064 - L1M4c LINE L1 -6802 57 1 744 178 0 8 chr11 8500042 8500171 -142283382 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr11 8500183 8500204 -142283349 + AT_rich Low_complexity Low_complexity 1 21 0 1765 179 8 11 chr11 8500204 8500561 -142282992 - L1MB3 LINE L1 -16 6403 6048 43481 52 1 1 chr11 8500564 8506697 -142276856 - L1PA5 LINE L1 -8 6146 11 3280 162 19 14 chr11 8506706 8507585 -142275968 - L1MB3 LINE L1 -346 6061 5180 2188 138 59 0 chr11 8507586 8507942 -142275611 - L1MB3 LINE L1 -5972 412 36 208 373 20 46 chr11 8508557 8508710 -142274843 + MIR3 SINE MIR 14 162 -46 2250 84 3 39 chr11 8508835 8509144 -142274409 + AluSp SINE Alu 1 298 -15 1901 127 26 39 chr11 8509730 8510037 -142273516 + AluJb SINE Alu 1 303 -9 954 163 35 23 chr11 8511476 8511648 -142271905 + FRAM SINE Alu 3 176 0 197 189 0 0 chr11 8511744 8511781 -142271772 + MIR SINE MIR 220 256 -6 197 343 50 20 chr11 8511931 8512030 -142271523 - MIR SINE MIR -82 126 25 32 0 0 0 chr11 8512936 8512968 -142270585 + AT_rich Low_complexity Low_complexity 1 32 0 1803 180 0 0 chr11 8512974 8513258 -142270295 - AluJo SINE Alu -28 284 1 288 326 69 100 chr11 8513416 8513677 -142269876 - L2 LINE L2 -8 3264 3012 405 307 122 22 chr11 8513767 8514037 -142269516 - L2 LINE L2 -970 2344 2048 1164 213 105 45 chr11 8514068 8514119 -142269434 + HAL1 LINE L1 1012 1058 -1449 2017 119 6 29 chr11 8514119 8514430 -142269123 + AluSx SINE Alu 1 304 -8 1164 213 105 45 chr11 8514430 8514805 -142268748 + HAL1 LINE L1 1058 1464 -1043 571 211 8 0 chr11 8514832 8514955 -142268598 + HAL1 LINE L1 1658 1781 -726 415 243 72 0 chr11 8515244 8515355 -142268198 - FRAM SINE Alu -11 165 47 288 0 0 0 chr11 8515579 8515611 -142267942 + (CA)n Simple_repeat Simple_repeat 2 33 0 229 250 13 66 chr11 8516203 8516279 -142267274 - MER5B DNA MER1_type -78 100 29 192 301 106 8 chr11 8516399 8516522 -142267031 + L2 LINE L2 2686 2820 -494 683 229 78 69 chr11 8516522 8516844 -142266709 - MLT1I LTR MaLR 0 409 73 3041 155 86 29 chr11 8516897 8517279 -142266274 - L1MB5 LINE L1 0 6174 5742 2167 107 31 0 chr11 8517279 8517569 -142265984 + AluSx SINE Alu 1 299 -13 3041 155 86 29 chr11 8517569 8517800 -142265753 - L1MB5 LINE L1 -432 5742 5526 812 89 0 0 chr11 8518441 8518542 -142265011 + HY3 scRNA scRNA 1 101 0 2549 66 0 7 chr11 8518555 8518860 -142264693 + AluY SINE Alu 1 303 -8 2214 106 0 7 chr11 8519048 8519349 -142264204 - AluSx SINE Alu 0 312 14 35 41 0 0 chr11 8519608 8519657 -142263896 + AT_rich Low_complexity Low_complexity 1 49 0 934 127 0 0 chr11 8519735 8519853 -142263700 - FLAM_C SINE Alu -15 118 1 1056 159 6 0 chr11 8519975 8520145 -142263408 - MER47A DNA MER2_type -194 172 2 1382 145 93 93 chr11 8520228 8520539 -142263014 + AluJo SINE Alu 1 311 -1 2425 70 0 0 chr11 8520616 8520915 -142262638 - AluY SINE Alu -12 299 1 1655 187 3 17 chr11 8521024 8521318 -142262235 - AluJo SINE Alu -22 290 1 414 342 0 0 chr11 8522177 8522297 -142261256 - L2 LINE L2 0 3272 3153 2271 94 7 3 chr11 8523444 8523752 -142259801 - AluSx SINE Alu -3 309 1 23 0 0 0 chr11 8525216 8525239 -142258314 + GC_rich Low_complexity Low_complexity 1 23 0 281 68 23 0 chr11 8525432 8525476 -142258077 + (CA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr11 8526262 8526283 -142257270 + AT_rich Low_complexity Low_complexity 1 21 0 2193 92 24 0 chr11 8526283 8526576 -142256977 - AluSx SINE Alu -10 302 3 1378 109 95 5 chr11 8526860 8527071 -142256482 + MER30 DNA MER1_type 1 230 0 292 236 76 125 chr11 8527301 8527445 -142256108 - MIR SINE MIR -94 168 32 2224 125 0 13 chr11 8528077 8528388 -142255165 + AluJb SINE Alu 1 307 -5 225 271 4 4 chr11 8529170 8529228 -142254325 + MIR SINE MIR 21 75 -133 2664 45 0 0 chr11 8529703 8530014 -142253539 + AluY SINE Alu 1 311 0 2763 29 0 0 chr11 8530206 8530512 -142253041 - AluY SINE Alu -5 306 1 1698 191 0 7 chr11 8531718 8532027 -142251526 + AluJb SINE Alu 1 307 -5 2361 86 0 3 chr11 8532755 8533058 -142250495 + AluY SINE Alu 1 302 -9 30 0 0 0 chr11 8533118 8533148 -142250405 + AT_rich Low_complexity Low_complexity 1 30 0 676 175 0 0 chr11 8533156 8533259 -142250294 - FLAM_C SINE Alu -21 122 20 1811 169 0 16 chr11 8533677 8533985 -142249568 + AluJb SINE Alu 1 303 -9 35 54 0 0 chr11 8534060 8534116 -142249437 + AT_rich Low_complexity Low_complexity 1 56 0 5792 156 28 8 chr11 8534119 8534254 -142249299 - L1PB3 LINE L1 -1 6153 6022 186 43 0 0 chr11 8534254 8534277 -142249276 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 5792 156 28 8 chr11 8534277 8536132 -142247421 - L1PB3 LINE L1 -132 6022 4125 2454 29 0 4 chr11 8536699 8537014 -142246539 + AluY SINE Alu 1 314 0 264 216 103 69 chr11 8537253 8537369 -142246184 + L2 LINE L2 2119 2238 -1076 * 616 292 65 0 chr11 8537335 8537520 -142246033 - MIR SINE MIR -7 255 59 217 274 62 53 chr11 8537525 8537638 -142245915 + L2 LINE L2 2579 2692 -622 675 279 183 6 chr11 8537761 8538094 -142245459 + L2 LINE L2 2920 3311 -2 615 258 36 6 chr11 8538422 8538589 -142244964 - MIR3 SINE MIR -21 187 16 309 307 128 38 chr11 8538642 8538961 -142244592 - L2 LINE L2 -361 2953 2606 1958 157 10 0 chr11 8539250 8539555 -142243998 + AluJo SINE Alu 1 308 -4 255 273 0 78 chr11 8540037 8540114 -142243439 - L2 LINE L2 -2 3311 3241 200 160 60 0 chr11 8541067 8541117 -142242436 + CT-rich Low_complexity Low_complexity 3 55 0 1714 180 3 53 chr11 8541119 8541318 -142242235 - AluJb SINE Alu -3 309 131 1706 146 4 0 chr11 8541318 8541571 -142241982 + AluSx SINE Alu 41 294 -18 1714 180 3 53 chr11 8541571 8541694 -142241859 - AluJb SINE Alu -181 131 3 2114 128 0 0 chr11 8541788 8542099 -142241454 + AluSx SINE Alu 1 311 0 1898 157 0 20 chr11 8542123 8542428 -142241125 + AluJo SINE Alu 1 299 -13 352 219 116 43 chr11 8542455 8542619 -142240934 - L1ME4a LINE L1 -73 6048 5873 1334 228 75 28 chr11 8542688 8542884 -142240669 - MLT1A1 LTR MaLR -1 364 146 2362 84 3 7 chr11 8542884 8543194 -142240359 - AluSq SINE Alu -4 309 1 1334 228 75 28 chr11 8543194 8543317 -142240236 - MLT1A1 LTR MaLR -219 146 30 668 272 53 7 chr11 8543568 8543779 -142239774 - L1ME3 LINE L1 -1 6161 5935 712 168 50 17 chr11 8543802 8543921 -142239632 - FLAM_C SINE Alu -19 124 2 339 181 234 0 chr11 8544349 8544443 -142239110 - L1ME4a LINE L1 -12 6109 5994 838 219 96 86 chr11 8544519 8544925 -142238628 - L1ME3 LINE L1 -357 5764 5355 6273 121 39 14 chr11 8544947 8545960 -142237593 - L1MA8 LINE L1 0 6291 5254 1924 146 0 0 chr11 8546143 8546423 -142237130 - AluJb SINE Alu -32 280 1 2204 126 3 0 chr11 8546432 8546734 -142236819 - AluSx SINE Alu -9 303 1 2237 109 7 0 chr11 8546762 8547065 -142236488 - AluSx SINE Alu -7 305 1 278 282 26 0 chr11 8547070 8547148 -142236405 + L2 LINE L2 3227 3306 -7 861 191 39 17 chr11 8547160 8547338 -142236215 + Charlie4 DNA MER1_type 17 198 -1763 182 345 18 0 chr11 8547404 8547459 -142236094 + MIR SINE MIR 201 256 -6 338 194 90 52 chr11 8547629 8547784 -142235769 - L1MC5 LINE L1 -198 7763 7603 21 36 0 0 chr11 8547878 8547906 -142235647 + AT_rich Low_complexity Low_complexity 1 28 0 272 234 16 0 chr11 8550353 8550417 -142233136 - L1ME4a LINE L1 -2032 5776 5712 673 269 97 4 chr11 8550515 8550742 -142232811 + Charlie2 DNA MER1_type 83 330 -2532 * 1413 198 156 80 chr11 8550732 8551236 -142232317 + Charlie2 DNA MER1_type 1855 2444 -418 1865 170 0 22 chr11 8551236 8551553 -142232000 + AluJo SINE Alu 3 312 0 1413 198 156 80 chr11 8551553 8551850 -142231703 + Charlie2 DNA MER1_type 2444 2717 -145 1799 169 3 3 chr11 8551868 8552158 -142231395 - AluJb SINE Alu -22 290 1 327 175 193 9 chr11 8552164 8552278 -142231275 + Charlie2 DNA MER1_type 2696 2830 -32 231 342 54 16 chr11 8552376 8552560 -142230993 - L2 LINE L2 -218 3054 2864 2275 81 30 0 chr11 8552968 8553263 -142230290 + AluSx SINE Alu 1 304 -8 1856 141 0 37 chr11 8554611 8554909 -142228644 - AluJo SINE Alu -15 297 11 207 0 0 0 chr11 8554930 8554953 -142228600 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr11 8554974 8554997 -142228556 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 8555072 8555094 -142228459 + AT_rich Low_complexity Low_complexity 1 22 0 273 248 28 50 chr11 8557408 8557549 -142226004 - L1M4 LINE L1 -1020 5126 4989 195 319 77 0 chr11 8557893 8557984 -142225569 + MIR SINE MIR 49 146 -116 2142 108 0 0 chr11 8558630 8558925 -142224628 + AluSg SINE Alu 1 295 -15 1936 136 0 3 chr11 8559260 8559555 -142223998 + AluJb SINE Alu 1 294 -18 2220 101 3 0 chr11 8559557 8559865 -142223688 + AluSg SINE Alu 1 309 -1 233 229 16 0 chr11 8560211 8560272 -142223281 - L2 LINE L2 -811 2503 2442 265 204 0 0 chr11 8560667 8560711 -142222842 + MIR SINE MIR 209 252 -10 696 144 0 0 chr11 8561298 8561416 -142222137 + FLAM_A SINE Alu 19 136 0 272 250 120 10 chr11 8561663 8561763 -142221790 - MIR3 SINE MIR -94 114 4 211 325 18 65 chr11 8561812 8561981 -142221572 + MIR SINE MIR 72 232 -30 299 314 88 51 chr11 8562181 8562318 -142221235 + MIR3 SINE MIR 2 143 -65 1778 144 0 18 chr11 8562336 8562620 -142220933 + AluJo SINE Alu 13 291 -21 561 282 58 0 chr11 8563355 8563511 -142220042 - MIR SINE MIR -49 213 49 441 128 32 85 chr11 8563564 8563658 -142219895 - L1MC3 LINE L1 0 7785 7697 1347 189 65 77 chr11 8564908 8565311 -142218242 - MER21B LTR ERV1 -51 812 415 288 0 0 0 chr11 8565315 8565347 -142218206 + (TG)n Simple_repeat Simple_repeat 2 33 0 2046 123 0 16 chr11 8565936 8566253 -142217300 - AluSx SINE Alu 0 312 1 200 323 15 0 chr11 8566877 8566942 -142216611 + MIR SINE MIR 197 262 0 297 242 0 0 chr11 8567169 8567260 -142216293 + (CA)n Simple_repeat Simple_repeat 1 91 0 247 200 69 77 chr11 8567758 8567888 -142215665 + MER113 DNA MER1_type? 2 130 -391 2263 202 68 31 chr11 8567928 8568448 -142215105 - L1MC4a LINE L1 -94 7714 7172 1621 164 7 20 chr11 8568448 8568746 -142214807 - AluJb SINE Alu -18 294 1 2263 202 68 31 chr11 8568746 8568769 -142214784 - L1MC4a LINE L1 -636 7172 7151 1950 124 0 3 chr11 8569573 8569879 -142213674 - AluSx SINE Alu 0 305 1 236 303 91 40 chr11 8570969 8571144 -142212409 - MIR3 SINE MIR -4 204 21 1758 175 0 16 chr11 8571292 8571595 -142211958 - AluJb SINE Alu -14 298 1 381 300 39 89 chr11 8572074 8572434 -142211119 - L2 LINE L2 -101 3171 2830 1511 184 27 7 chr11 8573126 8573425 -142210128 - AluJo SINE Alu -7 305 1 255 211 19 0 chr11 8573434 8573486 -142210067 - MARNA DNA Mariner -372 214 162 1957 108 0 71 chr11 8574119 8574442 -142209111 - AluSx SINE Alu -12 300 1 831 187 0 0 chr11 8574732 8574871 -142208682 + FLAM_C SINE Alu 2 140 -3 480 280 13 38 chr11 8575096 8575253 -142208300 - MIR SINE MIR -50 212 60 440 229 76 0 chr11 8575289 8575394 -142208159 + MIR SINE MIR 150 262 0 867 151 17 62 chr11 8575553 8575732 -142207821 - AluJ SINE Alu 0 312 142 213 154 0 0 chr11 8576269 8576308 -142207245 + (TG)n Simple_repeat Simple_repeat 2 40 0 271 207 73 24 chr11 8576392 8576412 -142207141 + MER21B LTR ERV1 5 23 -840 342 0 0 0 chr11 8576412 8576450 -142207103 + (GA)n Simple_repeat Simple_repeat 2 39 0 271 207 73 24 chr11 8576450 8576511 -142207042 + MER21B LTR ERV1 23 90 -773 942 128 20 20 chr11 8576651 8576800 -142206753 - AluJ SINE Alu -163 149 1 2025 139 3 3 chr11 8576817 8577126 -142206427 - AluSx SINE Alu -2 310 2 1647 164 11 28 chr11 8578263 8578550 -142205003 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 8578553 8578603 -142204950 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1087 128 0 0 chr11 8578796 8578960 -142204593 + FAM SINE Alu 1 45 -4 2053 113 20 0 chr11 8579400 8579693 -142203860 + AluSq SINE Alu 1 299 -14 194 310 42 0 chr11 8580079 8580150 -142203403 + L2 LINE L2 2119 2192 -1122 926 314 75 26 chr11 8580229 8580682 -142202871 - L2 LINE L2 0 3313 2839 858 217 30 0 chr11 8580773 8580939 -142202614 + FRAM SINE Alu 1 171 -5 202 255 21 0 chr11 8580958 8581005 -142202548 + GA-rich Low_complexity Low_complexity 5 52 0 381 102 0 0 chr11 8581256 8581315 -142202238 + (GA)n Simple_repeat Simple_repeat 1 59 0 320 299 99 30 chr11 8583188 8583389 -142200164 + MIR SINE MIR 4 218 -44 183 80 0 0 chr11 8585163 8585188 -142198365 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr11 8585457 8585491 -142198062 + (TG)n Simple_repeat Simple_repeat 2 35 0 857 223 84 44 chr11 8586897 8587148 -142196405 + MIR SINE MIR 2 262 0 2187 107 3 0 chr11 8587253 8587552 -142196001 + AluSx SINE Alu 1 300 -12 673 254 66 31 chr11 8588252 8588480 -142195073 + MIR SINE MIR 21 256 -6 525 307 0 13 chr11 8588531 8588684 -142194869 + MIR3 SINE MIR 16 166 -42 2118 103 0 0 chr11 8588704 8588994 -142194559 - AluSx SINE Alu -22 290 1 798 262 78 25 chr11 8589500 8589744 -142193809 + MIR SINE MIR 6 262 0 2043 123 7 0 chr11 8589785 8590078 -142193475 - AluSx SINE Alu -17 295 1 542 202 0 0 chr11 8590079 8590178 -142193375 - AluSg/x SINE Alu -4 306 208 203 238 24 0 chr11 8590278 8590320 -142193233 + G-rich Low_complexity Low_complexity 1 43 0 1943 114 24 0 chr11 8591197 8591487 -142192066 - AluSx SINE Alu -15 297 1 551 199 252 0 chr11 8592221 8592372 -142191181 - MER5A DNA MER1_type 0 189 1 197 239 22 0 chr11 8593462 8593508 -142190045 - MIR SINE MIR -134 74 28 182 61 0 30 chr11 8593743 8593776 -142189777 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3174 169 59 45 chr11 8593862 8594559 -142188994 + L1MB4 LINE L1 5474 6180 0 1126 279 45 45 chr11 8594639 8595191 -142188362 - L1ME LINE L1 -303 5818 5267 390 299 106 75 chr11 8595369 8595541 -142188012 - L1ME LINE L1 -1038 5108 4924 2049 103 3 3 chr11 8595541 8595823 -142187730 - AluSx SINE Alu -29 283 2 390 299 106 75 chr11 8595823 8595904 -142187649 - L1ME LINE L1 -1222 4924 4847 1930 119 7 7 chr11 8595970 8596263 -142187290 - AluSx SINE Alu -19 293 1 206 209 0 23 chr11 8596741 8596784 -142186769 - L2 LINE L2 -16 3297 3256 1544 182 3 24 chr11 8596964 8597261 -142186292 - AluJb SINE Alu -21 291 1 180 375 16 16 chr11 8597502 8597630 -142185923 - L2 LINE L2 -213 3059 2932 260 130 0 0 chr11 8597778 8597824 -142185729 - MLT1G1 LTR MaLR -18 577 532 614 99 0 141 chr11 8597886 8598007 -142185546 - AluJo SINE Alu -124 188 85 356 297 0 0 chr11 8598050 8598168 -142185385 - L1MC5 LINE L1 -533 7428 7311 * 571 250 99 16 chr11 8598152 8598344 -142185209 - L1MC4 LINE L1 -547 7495 7288 419 191 23 183 chr11 8598389 8598651 -142184902 - L1MC5 LINE L1 -32 7929 7710 741 164 8 15 chr11 8600272 8600406 -142183147 + FLAM_A SINE Alu 1 133 0 575 265 160 10 chr11 8600598 8600798 -142182755 + MIR SINE MIR 6 235 -27 1784 145 6 25 chr11 8600900 8601218 -142182335 - AluJo SINE Alu 0 312 1 2293 90 0 0 chr11 8602929 8603228 -142180325 - AluSx SINE Alu -8 304 6 995 168 0 66 chr11 8603347 8603573 -142179980 - AluJo SINE Alu -15 297 87 656 237 109 62 chr11 8604109 8604481 -142179072 - L1ME4a LINE L1 -3 6118 5716 1470 175 8 27 chr11 8604481 8604744 -142178809 + AluJo SINE Alu 45 302 -10 656 237 109 62 chr11 8604744 8604868 -142178685 - L1ME4a LINE L1 -405 5716 5599 2487 70 0 3 chr11 8604884 8605186 -142178367 - AluY SINE Alu -10 301 1 520 251 126 13 chr11 8605719 8606124 -142177429 - L1ME LINE L1 -525 5641 5191 243 0 0 0 chr11 8606148 8606175 -142177378 + (TG)n Simple_repeat Simple_repeat 2 28 0 394 313 22 8 chr11 8606175 8606309 -142177244 - L1ME4a LINE L1 -537 5584 5449 285 345 35 9 chr11 8606333 8606449 -142177104 + L2 LINE L2 318 436 -2878 190 340 35 50 chr11 8606547 8606688 -142176865 + L2 LINE L2 628 766 -2548 209 358 103 24 chr11 8607212 8607377 -142176176 + L2 LINE L2 2871 3048 -224 2311 102 3 9 chr11 8607976 8608291 -142175262 + AluSp SINE Alu 1 313 0 272 222 56 11 chr11 8611331 8611421 -142172132 + L2 LINE L2 3176 3269 -3 282 260 110 0 chr11 8611607 8611707 -142171846 - L2 LINE L2 -1 3271 3161 577 296 64 27 chr11 8611774 8612071 -142171482 - L3 LINE CR1 -195 1382 1075 2573 185 82 25 chr11 8613059 8613168 -142170385 - MER119 DNA MER1_type 0 583 482 1938 132 35 3 chr11 8613168 8613456 -142170097 - AluSx SINE Alu -15 297 1 2573 185 82 25 chr11 8613456 8613898 -142169655 - MER119 DNA MER1_type -101 482 1 2199 75 85 0 chr11 8614243 8614525 -142169028 - AluSg SINE Alu -4 306 1 470 274 46 46 chr11 8614665 8614840 -142168713 + MIR SINE MIR 59 233 -29 2318 101 13 0 chr11 8614962 8615270 -142168283 - AluSx SINE Alu 0 312 1 2243 218 86 2 chr11 8615349 8615945 -142167608 - L1ME3A LINE L1 -2 6168 5523 1979 145 7 0 chr11 8616166 8616462 -142167091 - AluJb SINE Alu -14 298 1 33 0 0 0 chr11 8618044 8618077 -142165476 + AT_rich Low_complexity Low_complexity 1 33 0 2338 99 0 3 chr11 8618951 8619255 -142164298 - AluSc SINE Alu -6 303 1 29 28 0 0 chr11 8619649 8619685 -142163868 + AT_rich Low_complexity Low_complexity 1 36 0 734 169 0 31 chr11 8619706 8619836 -142163717 - AluJo SINE Alu -176 136 11 333 270 54 0 chr11 8621579 8621690 -142161863 - MIR3 SINE MIR -33 175 59 669 92 63 7 chr11 8622206 8622485 -142161068 + (CA)n Simple_repeat Simple_repeat 1 294 0 200 280 0 0 chr11 8622489 8622539 -142161014 + CT-rich Low_complexity Low_complexity 2 51 0 604 285 178 18 chr11 8625502 8625885 -142157668 - L3 LINE CR1 -516 1061 618 542 163 0 0 chr11 8625892 8625984 -142157569 + L1 LINE L1 3685 3776 -2370 6454 76 11 26 chr11 8626002 8626428 -142157125 + L1PA13 LINE L1 5254 5685 -478 2017 130 3 36 chr11 8626428 8626735 -142156818 + AluSx SINE Alu 2 298 -14 6454 76 11 26 chr11 8626735 8627218 -142156335 + L1PA13 LINE L1 5685 6149 -14 2431 90 0 0 chr11 8627224 8627534 -142156019 + AluY SINE Alu 1 310 -1 541 87 0 87 chr11 8627569 8627625 -142155928 + L1 LINE L1 3775 3822 -2324 2123 127 55 19 chr11 8627625 8627987 -142155566 - THE1C LTR MaLR 0 375 1 541 87 0 87 chr11 8627987 8628022 -142155531 + L1 LINE L1 3822 3858 -2288 217 371 150 0 chr11 8628057 8628224 -142155329 - L3 LINE CR1 -976 601 410 282 222 25 12 chr11 8628230 8628311 -142155242 + (TA)n Simple_repeat Simple_repeat 2 83 0 181 253 120 0 chr11 8628335 8628410 -142155143 - MIR SINE MIR -13 249 166 187 275 11 77 chr11 8628539 8628630 -142154923 - L2 LINE L2 -4 3268 3184 1283 151 66 37 chr11 8628958 8629230 -142154323 + L1MA9 LINE L1 6033 6312 0 1448 157 0 0 chr11 8629401 8629640 -142153913 + AluJb SINE Alu 68 306 0 1593 142 55 18 chr11 8629833 8630107 -142153446 - AluJo SINE Alu -16 296 13 44 0 0 0 chr11 8630247 8630291 -142153262 + AT_rich Low_complexity Low_complexity 1 44 0 2176 125 7 0 chr11 8630291 8630586 -142152967 - AluSx SINE Alu -15 297 1 362 294 7 34 chr11 8630630 8630776 -142152777 - MER112 DNA MER1_type -10 250 109 534 219 8 0 chr11 8630909 8631032 -142152521 + HAL1 LINE L1 1658 1781 -726 394 243 72 0 chr11 8631321 8631432 -142152121 - FRAM SINE Alu -1 165 47 387 0 0 0 chr11 8631656 8631699 -142151854 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 250 13 66 chr11 8632288 8632364 -142151189 - MER5B DNA MER1_type -78 100 29 689 229 78 69 chr11 8632607 8632929 -142150624 - MLT1I LTR MaLR 0 409 73 3027 153 86 29 chr11 8632982 8633364 -142150189 - L1MB5 LINE L1 0 6174 5742 2199 103 31 0 chr11 8633364 8633654 -142149899 + AluSx SINE Alu 1 299 -13 3027 153 86 29 chr11 8633654 8633885 -142149668 - L1MB5 LINE L1 -432 5742 5526 773 89 0 0 chr11 8634526 8634627 -142148926 + HY3 scRNA scRNA 1 101 0 2409 50 0 7 chr11 8634640 8634960 -142148593 + AluY SINE Alu 1 318 0 231 216 103 69 chr11 8635199 8635315 -142148238 + L2 LINE L2 2119 2238 -1076 * 565 292 65 0 chr11 8635281 8635466 -142148087 - MIR SINE MIR -7 255 59 185 283 62 53 chr11 8635471 8635584 -142147969 + L2 LINE L2 2579 2692 -622 581 282 183 6 chr11 8635707 8636040 -142147513 + L2 LINE L2 2920 3311 -2 1707 177 0 18 chr11 8686442 8686719 -142096834 + AluJb SINE Alu 27 298 -14 253 303 91 40 chr11 8686867 8687042 -142096511 + MIR3 SINE MIR 21 204 -4 1904 153 3 3 chr11 8689471 8689766 -142093787 + AluJo SINE Alu 15 309 -3 2012 118 28 0 chr11 8689991 8690280 -142093273 - AluSx SINE Alu -15 297 1 565 199 252 0 chr11 8691014 8691165 -142092388 - MER5A DNA MER1_type 0 189 1 202 239 22 0 chr11 8692255 8692301 -142091252 - MIR SINE MIR -134 74 28 182 61 0 30 chr11 8692536 8692569 -142090984 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3004 169 59 45 chr11 8692655 8693352 -142090201 + L1MB4 LINE L1 5474 6180 0 1052 279 45 45 chr11 8693432 8693984 -142089569 - L1ME LINE L1 -303 5818 5267 273 290 130 23 chr11 8694367 8694498 -142089055 - MER5A DNA MER1_type -22 167 23 185 327 72 39 chr11 8694796 8694949 -142088604 + L2 LINE L2 2703 2860 -454 272 356 19 0 chr11 8696596 8696700 -142086853 + MIR3 SINE MIR 81 186 -22 622 262 92 35 chr11 8697431 8697660 -142085893 + L2 LINE L2 2015 2256 -1058 1276 288 101 37 chr11 8697660 8698433 -142085120 + L2 LINE L2 2419 3248 -65 713 146 0 85 chr11 8698433 8698563 -142084990 - AluJb SINE Alu -15 297 179 210 222 37 19 chr11 8698563 8698617 -142084936 + L2 LINE L2 3258 3312 -1 967 270 78 48 chr11 8699299 8699785 -142083768 - MLT1H LTR MaLR 0 549 5 439 281 66 37 chr11 8699921 8699994 -142083559 - MIR3 SINE MIR -28 234 165 2258 97 7 16 chr11 8699994 8700304 -142083249 - AluSq SINE Alu -6 307 1 439 281 66 37 chr11 8700304 8700447 -142083106 - MIR3 SINE MIR -97 165 19 205 217 33 17 chr11 8700655 8700715 -142082838 + L2 LINE L2 3178 3238 -75 180 359 119 25 chr11 8700891 8701050 -142082503 + L3b LINE CR1 1277 1450 -133 685 197 24 8 chr11 8701280 8701407 -142082146 + L2 LINE L2 3184 3312 -1 676 261 19 12 chr11 8702403 8702564 -142080989 + MIR SINE MIR 52 213 -49 469 265 94 18 chr11 8702901 8703071 -142080482 - MER63A DNA MER1_type -1 209 27 2049 103 3 3 chr11 8703324 8703606 -142079947 - AluSx SINE Alu -29 283 2 1930 119 7 7 chr11 8703753 8704046 -142079507 - AluSx SINE Alu -19 293 1 206 209 0 23 chr11 8704523 8704566 -142078987 - L2 LINE L2 -16 3297 3256 1544 182 3 24 chr11 8704746 8705043 -142078510 - AluJb SINE Alu -21 291 1 180 375 16 16 chr11 8705284 8705412 -142078141 - L2 LINE L2 -213 3059 2932 260 130 0 0 chr11 8705560 8705606 -142077947 - MLT1G1 LTR MaLR -18 577 532 614 99 0 141 chr11 8705668 8705789 -142077764 - AluJo SINE Alu -124 188 85 356 297 0 0 chr11 8705832 8705950 -142077603 - L1MC5 LINE L1 -533 7428 7311 * 571 250 99 16 chr11 8705934 8706126 -142077427 - L1MC4 LINE L1 -547 7495 7288 419 191 23 183 chr11 8706171 8706433 -142077120 - L1MC5 LINE L1 -32 7929 7710 741 164 8 15 chr11 8708054 8708188 -142075365 + FLAM_A SINE Alu 1 133 0 575 265 160 10 chr11 8708380 8708580 -142074973 + MIR SINE MIR 6 235 -27 1784 145 6 25 chr11 8708682 8709000 -142074553 - AluJo SINE Alu 0 312 1 2151 97 3 7 chr11 8710669 8710969 -142072584 - AluSx SINE Alu -8 304 6 1563 108 0 0 chr11 8711245 8711457 -142072096 + AluSg/x SINE Alu 89 300 -12 673 254 66 31 chr11 8712157 8712385 -142071168 + MIR SINE MIR 21 256 -6 525 307 0 13 chr11 8712436 8712589 -142070964 + MIR3 SINE MIR 16 166 -42 2118 103 0 0 chr11 8712609 8712899 -142070654 - AluSx SINE Alu -22 290 1 798 262 78 25 chr11 8713405 8713649 -142069904 + MIR SINE MIR 6 262 0 2043 123 7 0 chr11 8713690 8713983 -142069570 - AluSx SINE Alu -17 295 1 1586 166 51 10 chr11 8713984 8714280 -142069273 - AluJb SINE Alu -4 308 1 1954 143 7 3 chr11 8714297 8714605 -142068948 - AluSx SINE Alu -2 310 2 1647 164 11 28 chr11 8715742 8716029 -142067524 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 8716032 8716082 -142067471 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1087 128 0 0 chr11 8716275 8716439 -142067114 + FAM SINE Alu 1 45 -4 2053 113 20 0 chr11 8716879 8717172 -142066381 + AluSq SINE Alu 1 299 -14 194 310 42 0 chr11 8717558 8717629 -142065924 + L2 LINE L2 2119 2192 -1122 926 314 75 26 chr11 8717708 8718161 -142065392 - L2 LINE L2 0 3313 2839 734 231 44 0 chr11 8718255 8718415 -142065138 + FRAM SINE Alu 5 171 -5 353 326 22 7 chr11 8718434 8718569 -142064984 + GA-rich Low_complexity Low_complexity 3 139 0 381 300 39 89 chr11 8719408 8719768 -142063785 - L2 LINE L2 -101 3171 2830 485 282 48 27 chr11 8720380 8720568 -142062985 - L2 LINE L2 -5 3308 3117 767 277 124 38 chr11 8720723 8721149 -142062404 - L2 LINE L2 -410 2904 2442 265 204 0 0 chr11 8721544 8721588 -142061965 + MIR SINE MIR 209 252 -10 765 183 0 0 chr11 8722110 8722246 -142061307 + FLAM_A SINE Alu 1 136 0 272 250 120 10 chr11 8722493 8722593 -142060960 - MIR3 SINE MIR -94 114 4 211 325 18 65 chr11 8722642 8722811 -142060742 + MIR SINE MIR 72 232 -30 303 324 76 44 chr11 8723011 8723169 -142060384 + MIR SINE MIR 2 163 -65 1730 147 0 18 chr11 8723170 8723449 -142060104 + AluJo SINE Alu 18 291 -21 381 102 0 0 chr11 8724351 8724410 -142059143 + (GA)n Simple_repeat Simple_repeat 1 59 0 320 299 99 30 chr11 8726282 8726483 -142057070 + MIR SINE MIR 4 218 -44 183 80 0 0 chr11 8728257 8728282 -142055271 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr11 8728551 8728585 -142054968 + (TG)n Simple_repeat Simple_repeat 2 35 0 857 223 84 44 chr11 8729991 8730242 -142053311 + MIR SINE MIR 2 262 0 412 164 0 125 chr11 8730422 8730526 -142053027 - AluJo SINE Alu -125 177 87 605 227 128 34 chr11 8731062 8731415 -142052138 - L1ME4a LINE L1 -3 6118 5733 1367 174 8 30 chr11 8731434 8731698 -142051855 + AluJo SINE Alu 45 302 -10 2334 73 0 3 chr11 8731838 8732140 -142051413 - AluY SINE Alu -10 301 1 500 251 126 13 chr11 8732673 8733078 -142050475 - L1ME4a LINE L1 -525 5641 5191 243 0 0 0 chr11 8733102 8733129 -142050424 + (TG)n Simple_repeat Simple_repeat 2 28 0 394 313 22 8 chr11 8733129 8733263 -142050290 - L1ME LINE L1 -537 5584 5449 318 345 35 9 chr11 8733287 8733403 -142050150 + L2 LINE L2 318 436 -2878 236 312 50 64 chr11 8733501 8733642 -142049911 + L2 LINE L2 628 766 -2548 304 330 82 79 chr11 8734002 8734608 -142048945 + L2 LINE L2 2694 3313 0 2138 102 6 10 chr11 8734930 8735244 -142048309 + AluSp SINE Alu 1 313 0 281 233 56 11 chr11 8738283 8738373 -142045180 + L2 LINE L2 3176 3269 -3 300 236 0 0 chr11 8738555 8738644 -142044909 + (TG)n Simple_repeat Simple_repeat 1 89 0 200 323 15 0 chr11 8738871 8738936 -142044617 - MIR SINE MIR 0 262 197 2046 123 0 16 chr11 8739560 8739877 -142043676 + AluSx SINE Alu 1 312 0 539 289 58 0 chr11 8740620 8740776 -142042777 - MIR SINE MIR -49 213 49 441 128 32 85 chr11 8740829 8740923 -142042630 - L1MC3 LINE L1 0 7785 7697 880 199 96 58 chr11 8742172 8742433 -142041120 - MER21B LTR ERV1 -51 812 542 186 253 67 53 chr11 8743311 8743386 -142040167 + L2 LINE L2 2864 2939 -374 231 185 192 39 chr11 8743786 8743916 -142039637 + L2 LINE L2 1325 1474 -1840 898 238 27 38 chr11 8743921 8744182 -142039371 + L2 LINE L2 2717 2974 -340 2288 76 3 0 chr11 8744394 8744685 -142038868 + AluSp SINE Alu 1 292 -21 3036 231 77 7 chr11 8744693 8745678 -142037875 + L1ME3A LINE L1 5120 6168 -2 2193 101 13 0 chr11 8745757 8746065 -142037488 + AluSx SINE Alu 1 312 0 536 274 46 46 chr11 8746187 8746362 -142037191 - MIR SINE MIR -29 233 59 2076 75 85 0 chr11 8746502 8746784 -142036769 + AluSg SINE Alu 1 306 -4 2213 189 79 38 chr11 8747129 8747579 -142035974 + MER119 DNA MER1_type 1 480 -103 1820 132 35 3 chr11 8747579 8747867 -142035686 + AluSx SINE Alu 1 297 -15 2213 189 79 38 chr11 8747867 8747976 -142035577 + MER119 DNA MER1_type 480 583 0 697 296 64 27 chr11 8748964 8749261 -142034292 + L3 LINE CR1 1075 1382 -195 293 267 118 0 chr11 8749274 8749428 -142034125 + L2 LINE L2 3139 3271 -1 208 286 0 0 chr11 8749586 8749642 -142033911 + L3 LINE CR1 1519 1574 -3 1658 184 27 7 chr11 8750067 8750366 -142033187 - AluJo SINE Alu -7 305 1 245 211 19 0 chr11 8750375 8750427 -142033126 - MARNA DNA Mariner -372 214 162 2116 108 0 71 chr11 8751060 8751383 -142032170 - AluSx SINE Alu -12 300 1 865 186 0 0 chr11 8751672 8751812 -142031741 + FLAM_C SINE Alu 1 140 -3 453 280 13 38 chr11 8752037 8752194 -142031359 - MIR SINE MIR -50 212 60 410 229 76 0 chr11 8752230 8752335 -142031218 + MIR SINE MIR 150 262 0 873 138 17 63 chr11 8752494 8752668 -142030885 - FRAM SINE Alu 0 176 11 213 154 0 0 chr11 8753210 8753249 -142030304 + (TG)n Simple_repeat Simple_repeat 2 40 0 256 207 73 24 chr11 8753333 8753353 -142030200 + MER21B LTR ERV1 5 23 -840 342 0 0 0 chr11 8753353 8753391 -142030162 + (GA)n Simple_repeat Simple_repeat 2 39 0 256 207 73 24 chr11 8753391 8753452 -142030101 + MER21B LTR ERV1 23 90 -773 1124 222 87 42 chr11 8753500 8753833 -142029720 - MSTD LTR MaLR -48 348 1 776 216 61 22 chr11 8753833 8753952 -142029601 + MER21B LTR ERV1 280 410 -453 288 0 0 0 chr11 8753952 8753984 -142029569 + (CA)n Simple_repeat Simple_repeat 2 33 0 776 216 61 22 chr11 8753984 8754043 -142029510 + MER21B LTR ERV1 410 465 -398 640 223 37 53 chr11 8754235 8754423 -142029130 + MIR SINE MIR 33 217 -45 332 174 184 0 chr11 8754583 8754681 -142028872 + L2 LINE L2 3139 3254 -18 208 331 65 8 chr11 8754807 8754931 -142028622 - MIR SINE MIR -88 174 44 187 158 0 53 chr11 8756105 8756143 -142027410 - L2 LINE L2 -37 3235 3200 204 40 0 0 chr11 8756202 8756227 -142027326 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1042 126 0 0 chr11 8756264 8756407 -142027146 + AluJb SINE Alu 1 143 -169 4739 180 36 15 chr11 8757010 8757988 -142025565 - L1MB7 LINE L1 -9 6175 5219 306 0 0 0 chr11 8757988 8758022 -142025531 + (TG)n Simple_repeat Simple_repeat 1 34 0 4739 180 36 15 chr11 8758022 8758799 -142024754 - L1MB7 LINE L1 -965 5219 4325 2116 154 0 0 chr11 8758799 8759097 -142024456 - AluSx SINE Alu -14 298 1 4739 180 36 15 chr11 8759097 8759257 -142024296 - L1MB7 LINE L1 -1859 4325 4170 628 193 64 138 chr11 8759470 8759578 -142023975 + L2 LINE L2 3008 3122 -191 2350 102 3 0 chr11 8759578 8759881 -142023672 - AluSx SINE Alu -8 304 1 628 193 64 138 chr11 8759881 8760098 -142023455 + L2 LINE L2 3122 3309 -4 308 188 42 21 chr11 8760162 8760258 -142023295 - MER113 DNA MER1_type? -422 99 2 1613 97 9 8 chr11 8760307 8760555 -142022998 - pTR5 LTR ERV1 -2042 396 136 374 232 30 0 chr11 8760558 8760657 -142022896 - LTR30 LTR ERV1 -80 642 541 3264 76 0 18 chr11 8760658 8761116 -142022437 - pTR5 LTR ERV1 -417 2021 1572 506 249 93 72 chr11 8761844 8762081 -142021472 + MIR SINE MIR 11 252 -10 265 250 0 48 chr11 8763356 8763440 -142020113 + CT-rich Low_complexity Low_complexity 3 82 0 344 222 121 0 chr11 8764820 8764919 -142018634 + L2 LINE L2 3193 3303 -10 421 273 8 8 chr11 8765045 8765166 -142018387 - MIR3 SINE MIR -11 197 77 290 258 22 22 chr11 8765601 8765690 -142017863 - MIR3 SINE MIR -14 194 106 2128 243 78 5 chr11 8766002 8766554 -142016999 - MLT1G1 LTR MaLR 0 595 4 290 267 61 46 chr11 8766563 8766694 -142016859 - MLT1G1-int LTR MaLR -18 1353 1221 996 118 0 0 chr11 8766696 8766831 -142016722 + AluJb SINE Alu 1 135 -177 1669 176 20 14 chr11 8766831 8767126 -142016427 + AluJb SINE Alu 1 297 -15 321 250 14 93 chr11 8767197 8767337 -142016216 - MLT1G1-int LTR MaLR -188 1183 1055 2528 76 0 0 chr11 8767617 8767918 -142015635 + AluSp SINE Alu 1 301 -12 1801 161 36 20 chr11 8768002 8768307 -142015246 + AluJb SINE Alu 1 310 -2 2310 116 0 0 chr11 8768489 8768782 -142014771 - AluSx SINE Alu -19 293 1 284 190 170 0 chr11 8768827 8768903 -142014650 - L1MA10 LINE L1 0 6334 6236 207 69 0 0 chr11 8768903 8768932 -142014621 + (CA)n Simple_repeat Simple_repeat 1 29 0 284 190 170 0 chr11 8768932 8768955 -142014598 - L1MA10 LINE L1 -98 6236 6218 2401 89 7 0 chr11 8768964 8769266 -142014287 - AluSp SINE Alu -9 304 1 457 349 80 0 chr11 8769380 8769618 -142013935 - MLT1G1-int LTR MaLR -830 541 285 1239 230 107 44 chr11 8769678 8769849 -142013704 - MLT1G3 LTR MaLR 0 555 396 1896 145 3 29 chr11 8769849 8770159 -142013394 + AluJo SINE Alu 1 302 -10 1239 230 107 44 chr11 8770159 8770503 -142013050 - MLT1G3 LTR MaLR -159 396 1 2024 162 3 13 chr11 8771830 8772145 -142011408 - AluJb SINE Alu 0 312 1 249 274 95 0 chr11 8772741 8772825 -142010728 - MIR SINE MIR -131 131 40 218 266 121 57 chr11 8773016 8773140 -142010413 - L2 LINE L2 0 3272 3141 515 209 178 31 chr11 8773678 8773869 -142009684 - L2 LINE L2 -1121 2193 1975 422 279 21 14 chr11 8773936 8774076 -142009477 + L2 LINE L2 1524 1664 -1650 1553 175 46 4 chr11 8774089 8774352 -142009201 + AluJo SINE Alu 6 279 -33 348 194 0 37 chr11 8774361 8774469 -142009084 + GA-rich Low_complexity Low_complexity 1 104 0 732 226 57 5 chr11 8774472 8774684 -142008869 + L2 LINE L2 1699 1921 -1393 820 120 0 0 chr11 8774789 8774897 -142008656 - FLAM_C SINE Alu -30 113 6 481 316 61 67 chr11 8777585 8777898 -142005655 - L2 LINE L2 -1 3271 2961 28 29 0 0 chr11 8778144 8778179 -142005374 + AT_rich Low_complexity Low_complexity 1 35 0 1805 164 11 3 chr11 8778184 8778471 -142005082 + AluJo SINE Alu 3 291 -21 423 38 0 0 chr11 8778473 8778526 -142005027 + (TG)n Simple_repeat Simple_repeat 2 54 0 505 338 57 11 chr11 8778837 8779118 -142004435 - L2 LINE L2 -1057 2257 1964 237 256 85 37 chr11 8779853 8780018 -142003535 + MIR SINE MIR 11 230 -32 202 259 37 25 chr11 8780715 8780796 -142002757 + MIR3 SINE MIR 79 160 -48 2196 82 64 3 chr11 8780827 8781109 -142002444 + AluSq SINE Alu 1 299 -14 979 163 144 9 chr11 8781144 8781359 -142002194 - MLT1A1 LTR MaLR -117 248 5 * 1969 237 33 10 chr11 8781349 8781830 -142001723 - LTR40a LTR ERVL -27 492 1 2386 67 0 3 chr11 8782175 8782459 -142001094 - AluY SINE Alu -16 295 13 203 149 0 21 chr11 8786189 8786236 -141997317 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 248 104 42 0 chr11 8786342 8786390 -141997163 + CT-rich Low_complexity Low_complexity 3 52 0 745 207 75 6 chr11 8786397 8786571 -141996982 + MER20 DNA MER1_type 32 217 -2 221 297 77 0 chr11 8787939 8788030 -141995523 - L2 LINE L2 -6 3307 3210 361 23 0 0 chr11 8788874 8788917 -141994636 + 5S rRNA rRNA 1 43 -78 2241 106 17 0 chr11 8789551 8789843 -141993710 + AluSx SINE Alu 1 297 -15 2407 72 0 7 chr11 8792924 8793216 -141990337 + AluSg SINE Alu 1 290 -20 855 157 42 6 chr11 8794299 8794465 -141989088 - L1MB8 LINE L1 -23 6155 5984 462 281 137 67 chr11 8794474 8794712 -141988841 + L2 LINE L2 2853 3073 -240 2412 79 3 3 chr11 8794712 8795017 -141988536 - AluSp SINE Alu -8 305 1 462 281 137 67 chr11 8795017 8795209 -141988344 + L2 LINE L2 3073 3313 0 369 0 0 0 chr11 8795806 8795847 -141987706 + (TG)n Simple_repeat Simple_repeat 1 41 0 324 263 105 0 chr11 8796817 8796912 -141986641 - MIR SINE MIR -77 185 81 2427 84 3 3 chr11 8797632 8797931 -141985622 - AluSp SINE Alu -14 299 1 399 267 69 0 chr11 8798071 8798187 -141985366 + MIR SINE MIR 59 182 -80 475 262 152 92 chr11 8799757 8800320 -141983233 - L2 LINE L2 -1 3312 2702 325 263 281 55 chr11 8800443 8800758 -141982795 - L2 LINE L2 -1496 1818 1576 2144 102 3 24 chr11 8800758 8801053 -141982500 + AluSx SINE Alu 1 289 -23 325 263 281 55 chr11 8801053 8801213 -141982340 - L2 LINE L2 -1738 1576 1235 214 296 171 5 chr11 8803816 8804015 -141979538 - L2 LINE L2 -2365 949 718 3525 115 22 28 chr11 8804096 8804677 -141978876 - LTR9B LTR ERV1 0 644 67 609 114 48 6 chr11 8804677 8804915 -141978638 + AluSc SINE Alu 6 286 -23 695 223 59 3 chr11 8807096 8807108 -141976445 + MIR SINE MIR 52 62 -200 1814 131 22 47 chr11 8807108 8807428 -141976125 - AluJo SINE Alu 0 312 1 695 223 59 3 chr11 8807428 8807612 -141975941 + MIR SINE MIR 62 262 0 2138 82 67 0 chr11 8808209 8808479 -141975074 + AluSq SINE Alu 1 288 -25 2006 136 8 58 chr11 8809999 8810179 -141973374 + MER2 DNA MER2_type 2 158 -186 1721 177 7 7 chr11 8810179 8810495 -141973058 - AluJo SINE Alu 0 316 1 2006 136 8 58 chr11 8810495 8810674 -141972879 + MER2 DNA MER2_type 158 344 0 280 304 59 20 chr11 8810900 8811002 -141972551 - MIR SINE MIR -68 140 35 2184 78 14 17 chr11 8812964 8813259 -141970294 + AluSg SINE Alu 1 294 -16 727 115 107 66 chr11 8813399 8813521 -141970032 - FLAM_C SINE Alu -6 127 1 1502 198 146 33 chr11 8813853 8814447 -141969106 - MER20B DNA MER1_type 0 783 53 935 153 0 7 chr11 8814448 8814592 -141968961 + FLAM_C SINE Alu 1 143 0 1718 153 62 42 chr11 8814949 8815365 -141968188 - MSTB1 LTR MaLR -2 430 1 381 262 99 0 chr11 8816501 8816642 -141966911 + Charlie2a DNA MER1_type 1509 1663 -1199 2400 62 28 0 chr11 8817351 8817640 -141965913 + AluY SINE Alu 1 297 -14 189 234 125 0 chr11 8817659 8817723 -141965830 - MIR SINE MIR -74 188 117 1436 103 41 0 chr11 8817880 8818075 -141965478 - AluSp SINE Alu -32 281 79 189 216 39 39 chr11 8818643 8818694 -141964859 - MER5A DNA MER1_type -42 147 97 2142 94 28 0 chr11 8818741 8819029 -141964524 + AluSq SINE Alu 1 296 -17 1913 108 20 17 chr11 8821289 8821586 -141961967 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr11 8822350 8822375 -141961178 + GC_rich Low_complexity Low_complexity 1 25 0 860 154 0 7 chr11 8823264 8823407 -141960146 + FLAM_C SINE Alu 1 142 -1 2665 40 0 0 chr11 8823893 8824191 -141959362 + AluY SINE Alu 1 298 -13 393 336 181 32 chr11 8824203 8825268 -141958285 + L2 LINE L2 1746 2969 -345 377 325 6 44 chr11 8825335 8825499 -141958054 - MIR SINE MIR -62 146 6 552 268 48 59 chr11 8826889 8827347 -141956206 - L1ME4a LINE L1 -196 5925 5472 767 183 15 0 chr11 8827697 8827828 -141955725 - FLAM_C SINE Alu 0 133 1 254 363 44 0 chr11 8827828 8827919 -141955634 + MIR SINE MIR 59 153 -109 327 237 128 51 chr11 8827926 8828082 -141955471 - L2 LINE L2 0 3313 3146 24 77 0 0 chr11 8828345 8828397 -141955156 + AT_rich Low_complexity Low_complexity 1 52 0 232 211 77 0 chr11 8828455 8828507 -141955046 + Charlie8 DNA MER1_type 1358 1413 -1004 5196 165 87 87 chr11 8828841 8829304 -141954249 + Charlie1a DNA MER1_type 1 462 -2299 2112 83 34 0 chr11 8829304 8829606 -141953947 + AluSc SINE Alu 9 319 0 5196 165 87 87 chr11 8829606 8829644 -141953909 + Charlie1a DNA MER1_type 462 498 -2263 2191 126 3 0 chr11 8829644 8829938 -141953615 + AluSp SINE Alu 1 295 -18 5196 165 87 87 chr11 8829938 8830640 -141952913 + Charlie1a DNA MER1_type 498 1210 -1551 1698 169 17 33 chr11 8830640 8830960 -141952593 + AluJo SINE Alu 1 312 0 5196 165 87 87 chr11 8830960 8831207 -141952346 + Charlie1a DNA MER1_type 1210 1455 0 2346 55 45 7 chr11 8832098 8832388 -141951165 + AluY SINE Alu 1 301 -10 2069 122 6 39 chr11 8832395 8832706 -141950847 + AluJb SINE Alu 1 301 -11 283 245 75 47 chr11 8832712 8832818 -141950735 + MIR SINE MIR 28 136 -126 195 311 170 19 chr11 8834011 8834117 -141949436 + L2 LINE L2 3146 3267 -5 268 100 25 0 chr11 8834275 8834315 -141949238 - Alu SINE Alu -259 41 1 21 36 0 0 chr11 8834710 8834738 -141948815 + AT_rich Low_complexity Low_complexity 1 28 0 1680 114 0 87 chr11 8834863 8835008 -141948545 + L1PA15 LINE L1 5892 5999 -166 2245 104 7 10 chr11 8835008 8835316 -141948237 + AluSx SINE Alu 4 310 -2 1680 114 0 87 chr11 8835316 8835469 -141948084 + L1PA15 LINE L1 5999 6164 -1 2223 111 3 0 chr11 8835668 8835956 -141947597 - AluSx SINE Alu -23 289 1 584 256 74 80 chr11 8836236 8836432 -141947121 + MLT1G1 LTR MaLR 10 247 -348 2457 74 3 3 chr11 8836432 8836742 -141946811 + AluSx SINE Alu 1 310 -2 584 256 74 80 chr11 8836742 8836850 -141946703 + MLT1G1 LTR MaLR 247 354 -241 4523 142 19 11 chr11 8837000 8837782 -141945771 + L1MB3 LINE L1 5254 6041 -142 1529 183 15 15 chr11 8837778 8838116 -141945437 - L1M4 LINE L1 -816 5330 4993 * 1861 110 14 52 chr11 8838199 8838490 -141945063 + AluSx SINE Alu 3 282 -30 677 258 17 77 chr11 8838559 8838792 -141944761 + MIR SINE MIR 19 237 -25 2451 95 0 6 chr11 8838948 8839263 -141944290 - AluSq SINE Alu 0 313 1 2439 59 28 0 chr11 8839355 8839642 -141943911 - AluY SINE Alu -16 295 1 376 308 115 0 chr11 8839726 8839856 -141943697 - L2 LINE L2 -17 3255 3111 243 286 66 33 chr11 8840528 8840619 -141942934 + L2 LINE L2 3177 3270 -2 185 229 0 0 chr11 8840701 8840736 -141942817 - MIR SINE MIR -12 250 216 1324 102 67 9 chr11 8840952 8841177 -141942376 + Tigger7 DNA MER2_type 2254 2491 0 311 364 71 7 chr11 8842710 8842864 -141940689 - MIR3 SINE MIR -23 185 22 268 358 96 3 chr11 8843441 8843705 -141939848 + L2 LINE L2 2738 3031 -241 885 138 66 42 chr11 8843836 8844003 -141939550 - MER58A DNA MER1_type -11 213 43 213 330 133 26 chr11 8844122 8844355 -141939198 - L2 LINE L2 -342 2972 2715 1456 137 32 40 chr11 8844363 8844612 -141938941 + AluJo SINE Alu 66 312 0 618 299 43 9 chr11 9044845 9045056 -141738497 + MIR SINE MIR 1 218 -44 321 87 0 0 chr11 9045198 9045244 -141738309 - AluJo SINE Alu -10 292 247 1564 151 0 20 chr11 9045310 9045555 -141737998 - AluJo SINE Alu -72 240 1 342 266 65 43 chr11 9045557 9045696 -141737857 - HAL1 LINE L1 -2135 372 231 30 27 0 0 chr11 9045805 9045842 -141737711 + AT_rich Low_complexity Low_complexity 1 37 0 223 242 48 16 chr11 9046224 9046286 -141737267 - MIR SINE MIR -116 146 83 311 332 54 36 chr11 9046406 9046629 -141736924 - LTR67 LTR ERVL -295 262 36 1699 218 14 6 chr11 9046923 9047286 -141736267 - MLT2D LTR ERVL -48 366 1 560 273 246 25 chr11 9047870 9048497 -141735056 - L2 LINE L2 -248 3065 2305 2274 164 3 8 chr11 9048750 9049115 -141734438 + MLT1A1 LTR MaLR 3 365 0 1421 283 72 4 chr11 9050440 9050899 -141732654 + L2 LINE L2 2824 3313 0 22 0 0 0 chr11 9051165 9051187 -141732366 + AT_rich Low_complexity Low_complexity 1 22 0 226 305 0 0 chr11 9052343 9052402 -141731151 - MIR SINE MIR -63 145 87 253 311 57 62 chr11 9052489 9052682 -141730871 - L2 LINE L2 -210 3062 2871 2593 59 0 0 chr11 9053196 9053499 -141730054 - AluY SINE Alu -8 303 1 2241 168 12 22 chr11 9053772 9054172 -141729381 + MSTD LTR MaLR 1 396 0 186 219 0 0 chr11 9054516 9054548 -141729005 + L2 LINE L2 3024 3055 -258 406 302 191 41 chr11 9054844 9055361 -141728192 - L2 LINE L2 -342 2972 2378 182 286 66 33 chr11 9056762 9056853 -141726700 - MIR3 SINE MIR -31 177 84 2148 109 7 0 chr11 9056868 9057180 -141726373 - AluSx SINE Alu 0 314 1 249 316 84 32 chr11 9057700 9057890 -141725663 + MIR SINE MIR 2 201 -61 3500 176 66 18 chr11 9057902 9058614 -141724939 - LTR39 LTR ERV1 0 783 38 869 215 25 0 chr11 9058617 9058780 -141724773 - MIR SINE MIR -23 239 73 1446 213 82 26 chr11 9059750 9060203 -141723350 - L1ME LINE L1 -480 5686 5185 2031 146 0 3 chr11 9060203 9060504 -141723049 - AluJb SINE Alu -12 300 1 1446 213 82 26 chr11 9060504 9060728 -141722825 - L1ME LINE L1 -981 5185 4975 279 262 37 19 chr11 9060833 9060940 -141722613 - HAL1b LINE L1 -49 1299 1191 672 83 4 78 chr11 9061044 9061311 -141722242 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 9061376 9061397 -141722156 + AT_rich Low_complexity Low_complexity 1 21 0 294 287 86 17 chr11 9062178 9062352 -141721201 - L1ME LINE L1 -1227 4919 4734 480 310 139 24 chr11 9062442 9062729 -141720824 - L1ME LINE L1 -1515 4631 4312 345 293 40 30 chr11 9062787 9062985 -141720568 - L1ME LINE L1 -1924 4222 4023 376 338 88 7 chr11 9063008 9063156 -141720397 - L1ME LINE L1 -2275 3871 3712 455 33 16 0 chr11 9063753 9063814 -141719739 + (CA)n Simple_repeat Simple_repeat 2 63 0 312 275 83 25 chr11 9063991 9064111 -141719442 - L1MC4 LINE L1 -1335 6707 6581 265 191 33 40 chr11 9064120 9064272 -141719281 + (CATATA)n Simple_repeat Simple_repeat 2 152 0 358 202 0 101 chr11 9064275 9064374 -141719179 - L1MC4 LINE L1 -1340 6702 6614 353 204 0 112 chr11 9064286 9064384 -141719169 + L1MC4 LINE L1 6617 6703 -1339 * 250 233 17 0 chr11 9064416 9064476 -141719077 + L1M4 LINE L1 2957 3017 -3129 591 222 83 44 chr11 9064481 9064804 -141718749 - MLT1I LTR MaLR -2 407 82 28 0 0 0 chr11 9064952 9064980 -141718573 + AT_rich Low_complexity Low_complexity 1 28 0 3545 96 14 0 chr11 9065048 9065558 -141717995 - Tigger4(Zombi) DNA MER2_type -3 2728 2212 461 195 0 0 chr11 9065563 9065645 -141717908 - Tigger4(Zombi) DNA MER2_type -2649 82 1 26 0 0 0 chr11 9065711 9065737 -141717816 + AT_rich Low_complexity Low_complexity 1 26 0 1671 99 4 0 chr11 9066022 9066255 -141717298 + L1PA11 LINE L1 5939 6172 -2 232 222 0 28 chr11 9066344 9066416 -141717137 + (TA)n Simple_repeat Simple_repeat 2 71 0 43 20 0 0 chr11 9066460 9066510 -141717043 + AT_rich Low_complexity Low_complexity 1 50 0 415 89 18 0 chr11 9066627 9066683 -141716870 - Alu SINE Alu -260 58 2 811 334 72 28 chr11 9066687 9066869 -141716684 - L2 LINE L2 -2783 531 358 2430 95 3 0 chr11 9066869 9067175 -141716378 + AluSc SINE Alu 1 307 -2 811 334 72 28 chr11 9067175 9067453 -141716100 - L2 LINE L2 -2956 358 51 2256 123 0 0 chr11 9067686 9067986 -141715567 + AluSx SINE Alu 1 300 -12 387 273 21 103 chr11 9068746 9068940 -141714613 - MIR3 SINE MIR -30 178 1 2381 86 0 17 chr11 9069191 9069493 -141714060 - AluSc SINE Alu -12 297 1 577 178 68 0 chr11 9070110 9070256 -141713297 + L1MB8 LINE L1 6017 6172 -6 729 323 92 24 chr11 9070256 9071166 -141712387 + L1MC4a LINE L1 4904 5233 -913 903 176 0 48 chr11 9071319 9071484 -141712069 + FRAM SINE Alu 1 156 -20 502 286 121 57 chr11 9071586 9072024 -141711529 + L2 LINE L2 2567 3029 -243 182 37 37 0 chr11 9073156 9073183 -141710370 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 290 252 99 46 chr11 9073511 9073662 -141709891 + MLT1J2 LTR MaLR 1 159 -291 2137 142 0 3 chr11 9075411 9075720 -141707833 + AluSx SINE Alu 1 308 -4 229 241 102 77 chr11 9075920 9076194 -141707359 + L2 LINE L2 2472 2752 -562 * 630 283 23 39 chr11 9076184 9076446 -141707107 - MIR SINE MIR 0 262 6 1446 260 94 15 chr11 9076481 9076989 -141706564 + L2 LINE L2 2780 3312 -1 238 328 39 8 chr11 9076995 9077123 -141706430 + L2 LINE L2 2919 3050 -222 388 325 33 8 chr11 9077559 9077679 -141705874 - MER91C DNA MER1_type 0 140 18 548 291 35 35 chr11 9078290 9078489 -141705064 - MIR SINE MIR -56 206 8 235 140 0 0 chr11 9080085 9080135 -141703418 - LTR66 LTR ERVL -167 443 394 220 213 21 0 chr11 9080210 9080257 -141703296 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 224 264 11 0 chr11 9080360 9080447 -141703106 + (TGGA)n Simple_repeat Simple_repeat 4 91 0 210 329 13 0 chr11 9080458 9080537 -141703016 + (TGGA)n Simple_repeat Simple_repeat 3 82 0 180 111 0 0 chr11 9080561 9080588 -141702965 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 228 67 0 0 chr11 9081886 9081916 -141701637 + (CCCCAG)n Simple_repeat Simple_repeat 4 33 0 266 210 0 16 chr11 9081946 9082008 -141701545 + G-rich Low_complexity Low_complexity 3 63 0 441 54 0 0 chr11 9082793 9082849 -141700704 + (TG)n Simple_repeat Simple_repeat 2 57 0 541 311 99 77 chr11 9082858 9083312 -141700241 + L2 LINE L2 2805 3268 -4 937 227 77 57 chr11 9083349 9083596 -141699957 + MIR SINE MIR 1 252 -10 213 256 122 24 chr11 9083603 9083685 -141699868 - L2 LINE L2 -41 3231 3142 421 274 103 0 chr11 9083776 9083893 -141699660 + MIR SINE MIR 28 156 -106 229 237 158 0 chr11 9084360 9084436 -141699117 + MIR SINE MIR 8 95 -167 884 270 103 71 chr11 9084619 9084796 -141698757 + L2 LINE L2 2505 2675 -638 2297 113 7 0 chr11 9084796 9085106 -141698447 - AluSx SINE Alu 0 312 1 884 270 103 71 chr11 9085106 9085415 -141698138 + L2 LINE L2 2675 3016 -297 480 252 42 8 chr11 9085680 9085799 -141697754 + L2 LINE L2 3180 3302 -11 389 274 44 15 chr11 9086179 9086314 -141697239 + MIR3 SINE MIR 32 170 -38 284 315 18 45 chr11 9086299 9086410 -141697143 - MIR SINE MIR -84 178 71 * 258 227 61 0 chr11 9086422 9086488 -141697065 + L2 LINE L2 3158 3227 -86 207 362 103 0 chr11 9086573 9086689 -141696864 + L2 LINE L2 3139 3266 -6 808 279 150 19 chr11 9086810 9087346 -141696207 - L2 LINE L2 0 3313 2685 439 229 31 0 chr11 9089255 9089372 -141694181 - MIR SINE MIR -54 154 46 2252 117 0 0 chr11 9089968 9090267 -141693286 + AluSx SINE Alu 1 299 -13 210 344 16 24 chr11 9090627 9090752 -141692801 - L2 LINE L2 -943 2371 2248 240 310 121 14 chr11 9091508 9091667 -141691886 - MIR SINE MIR -3 205 19 246 81 0 0 chr11 9091917 9091954 -141691599 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 205 197 30 15 chr11 9094894 9094960 -141688593 + GA-rich Low_complexity Low_complexity 6 72 0 452 323 44 34 chr11 9095151 9095371 -141688182 + L1MEd LINE L1 845 1072 -5047 360 64 0 0 chr11 9095371 9095418 -141688135 + (CA)n Simple_repeat Simple_repeat 2 48 0 452 323 44 34 chr11 9095418 9095581 -141687972 + L1MEd LINE L1 1072 1232 -4887 322 274 38 0 chr11 9095941 9096047 -141687506 + L1MEd LINE L1 2457 2566 -3563 2307 101 3 0 chr11 9096139 9096436 -141687117 + AluSp SINE Alu 2 299 -14 1054 147 0 0 chr11 9096436 9096613 -141686940 + AluSg/x SINE Alu 134 310 0 237 193 21 186 chr11 9096827 9096870 -141686683 - L1ME3A LINE L1 -88 6082 6034 2314 84 0 32 chr11 9096870 9097180 -141686373 + AluY SINE Alu 1 300 -11 237 193 21 186 chr11 9097180 9097281 -141686272 - L1ME3A LINE L1 -136 6034 5962 1426 131 9 9 chr11 9097284 9097505 -141686048 + MER1B DNA MER1_type 1 221 -76 225 241 0 25 chr11 9097582 9097661 -141685892 - L1ME3A LINE L1 -208 5962 5886 321 311 14 54 chr11 9098004 9098152 -141685401 - MLT1K LTR MaLR -302 286 145 315 343 21 7 chr11 9099307 9099450 -141684103 - MIR SINE MIR -44 218 74 389 238 48 0 chr11 9101367 9101472 -141682081 - MIR SINE MIR -97 165 56 546 281 0 0 chr11 9101543 9101689 -141681864 - L1ME3 LINE L1 -48 6114 5969 251 279 38 0 chr11 9101817 9101896 -141681657 + MER94 DNA DNA 27 108 -26 352 228 185 0 chr11 9103498 9103590 -141679963 + MER91A DNA MER1_type 2 110 -86 603 27 0 0 chr11 9103703 9103776 -141679777 + (TG)n Simple_repeat Simple_repeat 2 74 0 3971 198 33 21 chr11 9106063 9106921 -141676632 - Tigger6a DNA MER2_type -214 869 2 800 189 51 0 chr11 9106927 9107102 -141676451 - L1ME3 LINE L1 -332 5830 5647 195 167 167 69 chr11 9107294 9107366 -141676187 - MIR SINE MIR -55 153 75 234 128 0 0 chr11 9108131 9108170 -141675383 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 285 322 91 77 chr11 9108179 9108465 -141675088 - L2 LINE L2 -1 3271 2982 189 269 0 103 chr11 9109742 9109820 -141673733 - L2 LINE L2 -247 3025 2956 712 247 30 12 chr11 9109844 9110010 -141673543 - MIR SINE MIR -42 220 52 213 263 9 53 chr11 9110010 9110124 -141673429 + (CA)n Simple_repeat Simple_repeat 2 110 0 372 277 126 69 chr11 9111271 9111502 -141672051 + L1ME4a LINE L1 5838 6081 -40 333 0 0 0 chr11 9111507 9111544 -141672009 + (TG)n Simple_repeat Simple_repeat 2 38 0 1816 167 3 7 chr11 9112414 9112708 -141670845 - AluJo SINE Alu -19 293 1 270 297 169 49 chr11 9112808 9113311 -141670242 + L3 LINE CR1 768 1344 -233 1313 212 73 42 chr11 9113311 9113763 -141669790 + MLT1C LTR MaLR 2 467 0 270 297 169 49 chr11 9113763 9113808 -141669745 + L3 LINE CR1 1344 1382 -195 830 148 15 11 chr11 9113815 9114085 -141669468 + CT-rich Low_complexity Low_complexity 1 271 0 1917 113 65 3 chr11 9114087 9114379 -141669174 - AluJo SINE Alu -2 310 1 1171 220 49 20 chr11 9115264 9115568 -141667985 - MLT1H LTR MaLR -186 363 51 1047 239 5 93 chr11 9116549 9116959 -141666594 - MLT1A2 LTR MaLR 0 374 1 1484 137 26 72 chr11 9117850 9118157 -141665396 + THE1C LTR MaLR 83 375 0 2258 110 3 3 chr11 9118751 9119051 -141664502 - AluSc SINE Alu -9 300 1 6226 189 20 13 chr11 9119533 9120239 -141663314 + L1P5 LINE L1 3837 4537 -1617 2392 114 2 53 chr11 9120239 9120463 -141663090 - THE1C LTR MaLR 0 375 177 2232 82 4 0 chr11 9120463 9120755 -141662798 + AluSp SINE Alu 17 309 0 2392 114 2 53 chr11 9120755 9120924 -141662629 - THE1C LTR MaLR -198 177 1 6226 189 20 13 chr11 9120924 9121829 -141661724 + L1P5 LINE L1 4537 5461 -693 4254 101 0 9 chr11 9121829 9122472 -141661081 - L1PA13 LINE L1 -4 6159 5523 6226 189 20 13 chr11 9122472 9122488 -141661065 + L1P5 LINE L1 5461 5475 -679 1956 127 0 0 chr11 9122488 9122747 -141660806 + AluSq SINE Alu 1 259 -54 295 219 47 0 chr11 9123033 9123097 -141660456 + MIR3 SINE MIR 112 178 -30 261 241 23 69 chr11 9123151 9123213 -141660340 + MIR3 SINE MIR 111 169 -39 2112 124 34 8 chr11 9123213 9123568 -141659985 + THE1B LTR MaLR 1 364 0 261 241 23 69 chr11 9123568 9123592 -141659961 + MIR3 SINE MIR 169 193 -15 219 167 0 0 chr11 9123642 9123684 -141659869 + (CA)n Simple_repeat Simple_repeat 2 43 0 455 313 33 0 chr11 9125050 9125200 -141658353 + MIR SINE MIR 21 175 -87 494 252 20 54 chr11 9126904 9127051 -141656502 + MER91A DNA MER1_type 14 155 -41 1023 250 68 78 chr11 9127151 9127699 -141655854 - MLT1H LTR MaLR 0 549 8 297 185 0 0 chr11 9129688 9129742 -141653811 + L2 LINE L2 3258 3311 -2 218 321 108 20 chr11 9129977 9130148 -141653405 + MIR SINE MIR 30 212 -50 23 0 0 0 chr11 9130813 9130836 -141652717 + AT_rich Low_complexity Low_complexity 1 23 0 542 243 76 43 chr11 9131709 9131842 -141651711 + MIR SINE MIR 60 202 -60 383 205 0 0 chr11 9131842 9131920 -141651633 + MER116 DNA Mariner 1 78 -2 542 243 76 43 chr11 9131920 9131971 -141651582 + MIR SINE MIR 202 250 -12 2823 20 0 0 chr11 9132307 9132612 -141650941 - AluY SINE Alu -6 305 1 28 29 0 0 chr11 9132708 9132743 -141650810 + AT_rich Low_complexity Low_complexity 1 35 0 361 268 112 7 chr11 9132743 9132890 -141650663 + L1MCa LINE L1 1918 6973 -1349 259 266 13 0 chr11 9133625 9133704 -141649849 - MIR3 SINE MIR -52 156 77 211 224 0 35 chr11 9136605 9136663 -141646890 + CT-rich Low_complexity Low_complexity 4 59 0 1810 155 11 14 chr11 9136782 9137066 -141646487 + AluJo SINE Alu 14 296 -16 767 228 17 22 chr11 9137381 9137561 -141645992 - MER5A DNA MER1_type -7 182 4 607 211 8 0 chr11 9139411 9139534 -141644019 + L1MA8 LINE L1 6166 6289 -2 254 260 208 19 chr11 9139595 9139749 -141643804 - L3 LINE CR1 -102 1475 1293 508 320 137 17 chr11 9139762 9139862 -141643691 - MIR SINE MIR 0 262 175 1912 106 0 72 chr11 9139862 9140183 -141643370 - AluY SINE Alu -13 298 1 508 320 137 17 chr11 9140183 9140316 -141643237 - MIR SINE MIR -87 175 1 309 341 48 3 chr11 9140330 9140538 -141643015 - L3 LINE CR1 -344 1233 964 249 303 56 0 chr11 9140885 9140974 -141642579 - MIR3 SINE MIR -33 175 82 230 267 43 60 chr11 9141339 9141455 -141642098 + MIR SINE MIR 27 140 -68 207 0 0 0 chr11 9141458 9141477 -141642076 + (GA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr11 9141477 9141500 -141642053 + (GA)n Simple_repeat Simple_repeat 2 24 0 1736 155 0 14 chr11 9141587 9141864 -141641689 - AluJo SINE Alu -39 273 1 1559 117 0 30 chr11 9141980 9142211 -141641342 - L1PA8A LINE L1 0 6131 5908 281 317 8 8 chr11 9142679 9142802 -141640751 + GA-rich Low_complexity Low_complexity 5 127 0 422 292 153 19 chr11 9143602 9143818 -141639735 - MLT1L LTR MaLR 0 615 371 1340 177 56 16 chr11 9144757 9145006 -141638547 - AluJo SINE Alu -53 259 1 236 253 26 148 chr11 9145276 9145505 -141638048 + L2 LINE L2 2998 3198 -74 275 260 0 0 chr11 9145543 9145616 -141637937 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 219 376 178 12 chr11 9145617 9145875 -141637678 + L3 LINE CR1 358 658 -919 524 314 0 0 chr11 9149290 9149465 -141634088 + (CCTCG)n Simple_repeat Simple_repeat 5 179 0 326 236 97 56 chr11 9150017 9150160 -141633393 + MIR3 SINE MIR 21 171 -37 310 313 30 55 chr11 9150175 9150376 -141633177 + L2 LINE L2 3083 3278 -35 303 337 96 16 chr11 9150922 9151109 -141632444 + MIR SINE MIR 2 203 -59 567 319 23 61 chr11 9151319 9151582 -141631971 - MIR SINE MIR -8 254 2 345 257 7 44 chr11 9151644 9151780 -141631773 + CT-rich Low_complexity Low_complexity 4 134 0 231 36 0 0 chr11 9154400 9154428 -141629125 + (CAGCC)n Simple_repeat Simple_repeat 5 32 0 210 35 0 105 chr11 9154483 9154540 -141629013 + (CTGGGG)n Simple_repeat Simple_repeat 1 51 0 249 277 53 21 chr11 9154674 9154768 -141628785 - L2 LINE L2 -39 3233 3137 204 246 8 119 chr11 9155088 9155222 -141628331 + L2 LINE L2 3154 3272 0 215 231 0 19 chr11 9155996 9156048 -141627505 + (CAGG)n Simple_repeat Simple_repeat 3 53 0 2179 90 30 10 chr11 9156585 9156886 -141626667 + AluSg1 SINE Alu 1 307 -2 288 287 17 40 chr11 9157652 9157666 -141625887 + (CATATA)n Simple_repeat Simple_repeat 1 14 -156 2006 85 6 82 chr11 9157666 9157983 -141625570 + AluSx SINE Alu 1 293 -19 288 287 17 40 chr11 9157983 9158142 -141625411 + (CATATA)n Simple_repeat Simple_repeat 14 170 0 379 276 31 0 chr11 9158917 9159015 -141624538 + MIR SINE MIR 80 180 -82 579 199 60 12 chr11 9159046 9159212 -141624341 - MIR SINE MIR -5 257 84 1687 167 16 16 chr11 9159787 9159917 -141623636 + AluJo SINE Alu 1 130 -182 288 0 0 0 chr11 9159917 9159949 -141623604 + (CA)n Simple_repeat Simple_repeat 2 33 0 1687 167 16 16 chr11 9159949 9160130 -141623423 + AluJo SINE Alu 129 312 0 905 231 52 0 chr11 9160130 9160355 -141623198 - MIR SINE MIR -6 256 17 319 317 106 0 chr11 9161123 9161246 -141622307 - L2 LINE L2 -1 3271 3136 304 283 151 52 chr11 9161351 9161623 -141621930 - L2 LINE L2 -491 2823 2525 191 414 29 10 chr11 9161627 9161731 -141621822 - MIR SINE MIR 0 262 157 652 271 9 32 chr11 9161733 9161954 -141621599 - LTR33 LTR ERVL -2 519 304 1154 267 41 26 chr11 9163080 9163469 -141620084 - MLT1I LTR MaLR 0 409 15 2632 107 5 29 chr11 9163936 9164320 -141619233 - THE1C LTR MaLR 0 375 1 197 200 0 0 chr11 9164660 9164695 -141618858 + MIR SINE MIR 75 109 -153 557 278 116 6 chr11 9164842 9165015 -141618538 + MIR SINE MIR 70 261 -1 464 210 63 145 chr11 9165342 9165669 -141617884 + LTR16A1 LTR ERVL 169 457 0 438 368 69 26 chr11 9165724 9165955 -141617598 - MIR SINE MIR -14 248 8 22 35 0 0 chr11 9168495 9168524 -141615029 + AT_rich Low_complexity Low_complexity 1 29 0 387 0 0 0 chr11 9170189 9170232 -141613321 + (CA)n Simple_repeat Simple_repeat 1 43 0 423 207 162 0 chr11 9171024 9171135 -141612418 + MER3 DNA MER1_type 77 205 -4 829 290 68 16 chr11 9171323 9171571 -141611982 + MIR SINE MIR 2 262 0 231 36 0 0 chr11 9171575 9171603 -141611950 + (CACCAT)n Simple_repeat Simple_repeat 6 33 0 1592 242 301 11 chr11 9174369 9175116 -141608437 + L1MC4 LINE L1 6948 7911 -131 2499 184 98 45 chr11 9176171 9176764 -141606789 - MLT1E3 LTR MaLR 0 624 1 565 179 8 15 chr11 9178527 9178661 -141604892 + CT-rich Low_complexity Low_complexity 4 136 0 1107 220 43 28 chr11 9179012 9179339 -141604214 - L1ME3 LINE L1 0 6162 5831 521 222 28 49 chr11 9179339 9179483 -141604070 - Tigger6 DNA MER2_type -3 1594 1454 23 33 0 0 chr11 9179595 9179625 -141603928 + AT_rich Low_complexity Low_complexity 1 30 0 536 330 85 13 chr11 9180559 9180795 -141602758 + MIR SINE MIR 5 257 -5 460 310 111 10 chr11 9180845 9181321 -141602232 + L2 LINE L2 2380 3254 -18 634 333 98 46 chr11 9181330 9182199 -141601354 - L2 LINE L2 -374 2940 2027 2178 130 9 35 chr11 9183432 9183778 -141599775 + MER1B DNA MER1_type 1 337 0 216 257 17 149 chr11 9183809 9183984 -141599569 + L2 LINE L2 2726 2877 -437 195 69 0 0 chr11 9184090 9184119 -141599434 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 263 309 93 32 chr11 9184347 9184593 -141598960 - L2 LINE L2 -189 3083 2823 1061 261 76 80 chr11 9184764 9185353 -141598200 + MER45C DNA AcHobo 46 632 -321 606 257 24 23 chr11 9186003 9186178 -141597375 + MIR SINE MIR 41 214 -48 828 281 49 20 chr11 9186204 9186450 -141597103 - MIR SINE MIR -8 254 2 1807 157 30 10 chr11 9186508 9186813 -141596740 - AluJo SINE Alu -1 311 1 21 36 0 0 chr11 9186813 9186841 -141596712 + AT_rich Low_complexity Low_complexity 1 28 0 254 274 27 0 chr11 9187331 9187404 -141596149 - L3 LINE CR1 -88 1489 1415 388 250 107 0 chr11 9187731 9187843 -141595710 - MER63 DNA MER1_type -86 750 1 342 123 0 0 chr11 9187887 9187944 -141595609 + (TG)n Simple_repeat Simple_repeat 2 58 0 205 74 0 0 chr11 9188684 9188711 -141594842 + L2 LINE L2 3231 3257 -15 182 65 65 0 chr11 9191903 9191934 -141591619 + CT-rich Low_complexity Low_complexity 3 35 0 212 241 0 19 chr11 9192067 9192121 -141591432 + CT-rich Low_complexity Low_complexity 4 56 0 639 313 42 32 chr11 9192134 9192351 -141591202 + MIR SINE MIR 25 243 -19 901 264 17 13 chr11 9192647 9192878 -141590675 + MIR SINE MIR 31 262 0 230 297 0 0 chr11 9193753 9193827 -141589726 + MIR SINE MIR 68 141 -67 223 271 188 24 chr11 9195276 9195361 -141588192 - MIR SINE MIR -66 142 44 1145 172 66 66 chr11 9196999 9197318 -141586235 - MER33 DNA MER1_type 0 324 6 195 313 104 17 chr11 9197334 9197449 -141586104 - MIR SINE MIR -68 140 16 194 304 194 44 chr11 9197640 9197867 -141585686 - L2 LINE L2 -27 3245 2985 24 0 0 0 chr11 9199017 9199041 -141584512 + GC_rich Low_complexity Low_complexity 1 24 0 1144 306 50 21 chr11 9199073 9199554 -141583999 + L2 LINE L2 2817 3311 -2 238 321 37 55 chr11 9200062 9200171 -141583382 + MIR3 SINE MIR 90 196 -12 231 103 0 0 chr11 9200296 9200335 -141583218 + (ACTG)n Simple_repeat Simple_repeat 4 42 0 347 257 55 9 chr11 9201713 9201822 -141581731 + L2 LINE L2 3199 3312 -1 295 297 70 62 chr11 9201901 9202029 -141581524 - MIR SINE MIR -61 147 28 196 254 85 0 chr11 9202152 9202211 -141581342 - MIR SINE MIR -61 147 84 811 135 8 23 chr11 9202951 9203084 -141580469 - AluSq/x SINE Alu -182 131 1 230 271 99 44 chr11 9203101 9203269 -141580284 + MIR3 SINE MIR 54 230 -32 * 249 359 166 0 chr11 9203242 9203387 -141580166 - L3 LINE CR1 -27 1550 1382 1897 149 7 7 chr11 9204007 9204303 -141579250 - AluJb SINE Alu -16 296 1 219 339 150 0 chr11 9204772 9204899 -141578654 - MIR SINE MIR -98 164 19 407 266 139 17 chr11 9207023 9207196 -141576357 - MIR3 SINE MIR -3 205 12 196 396 0 11 chr11 9208448 9208539 -141575014 + MIR SINE MIR 46 135 -127 205 313 0 10 chr11 9208782 9208878 -141574675 + CT-rich Low_complexity Low_complexity 1 95 0 307 350 55 21 chr11 9210004 9210223 -141573330 + MIR SINE MIR 6 233 -29 1919 197 53 40 chr11 9210295 9210845 -141572708 - L1MD3 LINE L1 0 8042 7501 254 328 128 8 chr11 9210846 9210971 -141572582 + MIR SINE MIR 78 217 -45 1607 143 3 52 chr11 9211308 9211595 -141571958 - AluJb SINE Alu -14 298 26 210 368 0 0 chr11 9211595 9211671 -141571882 - MIR SINE MIR -185 77 2 370 194 74 74 chr11 9211830 9211938 -141571615 + L2 LINE L2 3201 3308 -5 389 308 258 0 chr11 9212929 9213111 -141570442 + MIR SINE MIR 7 235 -27 1904 209 45 54 chr11 9213143 9213508 -141570045 + L1ME3 LINE L1 5612 5972 -190 2497 60 0 0 chr11 9213508 9213810 -141569743 + AluY SINE Alu 5 306 -5 1904 209 45 54 chr11 9213810 9214000 -141569553 + L1ME3 LINE L1 5972 6162 0 706 307 46 8 chr11 9214046 9214284 -141569269 - MIR SINE MIR -1 261 15 194 139 0 28 chr11 9215017 9215053 -141568500 - L2 LINE L2 -21 3251 3217 2378 154 3 8 chr11 9215573 9215937 -141567616 - MLT1A1 LTR MaLR 0 365 4 547 294 213 41 chr11 9216194 9217022 -141566531 + L2 LINE L2 2311 3254 -59 360 354 23 8 chr11 9218664 9218794 -141564759 + L3 LINE CR1 941 1072 -505 488 376 44 0 chr11 9220113 9220294 -141563259 - MIR SINE MIR -4 258 70 542 314 42 11 chr11 9220396 9220587 -141562966 + MIR SINE MIR 16 212 -50 193 280 43 43 chr11 9220622 9220715 -141562838 - MIR SINE MIR -82 180 88 3321 151 23 11 chr11 9220852 9220878 -141562675 + L1MB7 LINE L1 5601 5625 -559 2747 122 39 0 chr11 9220878 9221288 -141562265 - MSTB LTR MaLR 0 426 1 3321 151 23 11 chr11 9221288 9221830 -141561723 + L1MB7 LINE L1 5625 6176 -8 318 252 36 54 chr11 9223162 9223273 -141560280 - MIR SINE MIR -138 124 16 279 391 8 16 chr11 9224486 9224614 -141558939 + L2 LINE L2 2632 2758 -556 275 27 0 0 chr11 9224615 9224652 -141558901 + L1PA16 LINE L1 5945 5981 -185 421 119 0 83 chr11 9224653 9224737 -141558816 + L1PA16 LINE L1 6057 6133 -33 307 349 72 46 chr11 9225022 9225217 -141558336 - L1 LINE L1 -1535 4611 4412 196 280 20 0 chr11 9225929 9225979 -141557574 + MIR SINE MIR 108 158 -104 470 259 0 9 chr11 9226317 9226433 -141557120 - MIR SINE MIR -70 138 24 466 251 17 11 chr11 9226780 9226959 -141556594 + (TG)n Simple_repeat Simple_repeat 1 180 0 697 166 0 11 chr11 9226970 9227151 -141556402 + (TG)n Simple_repeat Simple_repeat 2 180 0 335 286 30 27 chr11 9227242 9227396 -141556157 + MIR SINE MIR 44 191 -62 1626 233 147 45 chr11 9227515 9228051 -141555502 + MLT1E LTR MaLR 3 593 0 834 274 15 0 chr11 9229908 9230109 -141553444 + MIR SINE MIR 8 211 -51 1476 241 109 47 chr11 9230109 9230338 -141553215 + MLT1H LTR MaLR 3 216 -333 1745 167 21 0 chr11 9230338 9230619 -141552934 + AluJb SINE Alu 7 293 -19 1476 241 109 47 chr11 9230619 9230904 -141552649 + MLT1H LTR MaLR 216 549 0 2639 26 0 0 chr11 9230926 9231229 -141552324 - AluY SINE Alu -8 303 1 291 165 282 0 chr11 9231419 9231504 -141552049 - MIR SINE MIR -63 145 37 974 222 53 0 chr11 9232100 9232289 -141551264 + MER63A DNA MER1_type 1 199 -11 190 435 9 9 chr11 9232696 9232811 -141550742 + MIR3 SINE MIR 65 179 -29 201 355 32 21 chr11 9233049 9233142 -141550411 - MIR SINE MIR -58 204 111 182 325 72 24 chr11 9236402 9236485 -141547068 + L3b LINE CR1 1477 1563 -20 199 167 0 0 chr11 9237161 9237191 -141546362 + MIR SINE MIR 81 110 -152 24 53 0 0 chr11 9238175 9238213 -141545340 + GC_rich Low_complexity Low_complexity 1 38 0 29 47 0 0 chr11 9238273 9238316 -141545237 + GC_rich Low_complexity Low_complexity 1 43 0 186 133 0 0 chr11 9238697 9238727 -141544826 + (GGGAGA)n Simple_repeat Simple_repeat 4 33 0 569 142 25 67 chr11 9239450 9239570 -141543983 - L2 LINE L2 -6 3307 3193 2146 113 0 3 chr11 9239714 9240024 -141543529 - AluSg SINE Alu -1 309 1 505 294 39 10 chr11 9240188 9240392 -141543161 + MIR SINE MIR 20 229 -33 509 238 9 9 chr11 9242326 9242431 -141541122 + MER81 DNA DNA 6 110 -4 590 194 82 47 chr11 9242674 9242844 -141540709 - MER69A DNA AcHobo 0 177 2 23 0 0 0 chr11 9243624 9243647 -141539906 + GC_rich Low_complexity Low_complexity 1 23 0 297 100 0 0 chr11 9244111 9244161 -141539392 + (TG)n Simple_repeat Simple_repeat 2 51 0 553 286 60 12 chr11 9245383 9245551 -141538002 + MER91A DNA MER1_type 21 196 0 322 332 26 0 chr11 9245837 9246027 -141537526 + L1M4 LINE L1 2170 2364 -3782 374 345 22 0 chr11 9246826 9247058 -141536495 + L1M4 LINE L1 2139 2375 -3771 919 283 71 48 chr11 9247065 9247713 -141535840 + L1M4 LINE L1 2856 3547 -2599 3473 135 15 2 chr11 9247713 9248262 -141535291 + L1MB2 LINE L1 5613 6168 -3 919 283 71 48 chr11 9248262 9248849 -141534704 + L1M4 LINE L1 3547 4119 -2027 265 317 35 95 chr11 9249203 9249436 -141534117 + L1MEd LINE L1 245 452 -5667 2064 111 7 13 chr11 9249436 9249734 -141533819 + AluSp SINE Alu 1 296 -17 265 317 35 95 chr11 9249734 9249847 -141533706 + L1MEd LINE L1 452 570 -5549 1157 8 0 0 chr11 9249847 9249979 -141533574 + AluYb8 SINE Alu 179 310 -8 2366 115 42 0 chr11 9250137 9250494 -141533059 + L1PB3 LINE L1 5783 6154 0 529 289 161 12 chr11 9252393 9252735 -141530818 + L3 LINE CR1 1143 1535 -42 850 283 163 30 chr11 9253183 9253265 -141530288 + L2 LINE L2 2271 2341 -973 4389 171 55 39 chr11 9253265 9254204 -141529349 + LTR13 LTR ERVK 1 954 0 850 283 163 30 chr11 9254204 9254630 -141528923 + L2 LINE L2 2341 2847 -467 464 218 42 109 chr11 9254789 9254982 -141528571 + L2 LINE L2 3132 3311 -2 2418 44 3 0 chr11 9255004 9255297 -141528256 - AluY SINE Alu -17 294 1 768 234 43 89 chr11 9256554 9256811 -141526742 + MIR SINE MIR 9 253 -9 693 259 74 26 chr11 9258443 9258713 -141524840 - LTR33 LTR ERVL -238 283 1 22 0 0 0 chr11 9259274 9259296 -141524257 + AT_rich Low_complexity Low_complexity 1 22 0 3714 80 31 0 chr11 9260414 9260890 -141522663 - L1P LINE L1 -5649 497 7 1477 133 0 0 chr11 9261061 9261272 -141522281 + AluSq SINE Alu 79 289 -24 11849 83 10 1 chr11 9261575 9263204 -141520349 - L1P LINE L1 -1485 4661 3018 1081 68 25 0 chr11 9263197 9263359 -141520194 + L1P LINE L1 4675 4840 -1306 * 270 0 0 0 chr11 9263459 9263489 -141520064 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 297 0 0 0 chr11 9263488 9263521 -141520032 + (TG)n Simple_repeat Simple_repeat 2 34 0 5424 110 15 23 chr11 9264248 9265148 -141518405 + L1MA4A LINE L1 5231 6122 -181 303 185 0 62 chr11 9265152 9265233 -141518320 + L1MA4A LINE L1 6188 6263 -40 7673 27 5 0 chr11 9265335 9266496 -141517057 + L1PA4 LINE L1 4980 6144 -11 1746 280 117 37 chr11 9266505 9267353 -141516200 + L1M4 LINE L1 2354 3133 -3013 1680 165 0 52 chr11 9267353 9267680 -141515873 + AluJo SINE Alu 1 310 -2 1746 280 117 37 chr11 9267680 9268358 -141515195 + L1M4 LINE L1 3133 4001 -2145 13473 41 1 3 chr11 9268473 9270123 -141513430 + L1P LINE L1 1422 3067 -3079 1360 209 38 48 chr11 9270223 9270301 -141513252 - L1M4 LINE L1 -1798 4348 4271 180 0 0 0 chr11 9270301 9270321 -141513232 + (TG)n Simple_repeat Simple_repeat 2 21 0 1360 209 38 48 chr11 9270321 9270581 -141512972 - L1M4 LINE L1 -1875 4271 4012 7540 71 22 2 chr11 9270581 9272395 -141511158 - L1PA7 LINE L1 -3 6151 4316 1360 209 38 48 chr11 9272395 9272428 -141511125 - L1M4 LINE L1 -2134 4012 3980 14994 27 5 0 chr11 9272574 9275041 -141508512 - L1PA4 LINE L1 -57 6098 3625 2163 102 7 3 chr11 9275152 9275457 -141508096 + AluSp SINE Alu 1 306 -7 7297 153 18 2 chr11 9275833 9278111 -141505442 - L1PB2 LINE L1 -1 6150 3837 374 171 199 74 chr11 9278281 9278394 -141505159 - MER112 DNA MER1_type -15 245 147 1709 169 3 10 chr11 9278394 9278701 -141504852 + AluJo SINE Alu 1 305 -7 374 171 199 74 chr11 9278701 9278763 -141504790 - MER112 DNA MER1_type -112 148 48 2149 123 0 0 chr11 9278774 9279058 -141504495 + AluSx SINE Alu 1 317 0 185 30 61 0 chr11 9279058 9279091 -141504462 + (CAA)n Simple_repeat Simple_repeat 2 180 0 778 269 60 0 chr11 9279493 9279694 -141503859 - MIR SINE MIR -9 253 41 216 283 0 0 chr11 9280078 9280131 -141503422 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1076 156 12 34 chr11 9280209 9280609 -141502944 + MLT1D LTR MaLR 1 505 0 456 268 196 22 chr11 9280680 9280904 -141502649 + L3 LINE CR1 1191 1453 -124 422 269 35 47 chr11 9280948 9281119 -141502434 - MIR SINE MIR -40 222 54 245 379 73 8 chr11 9281183 9281307 -141502246 - L2 LINE L2 0 3272 3141 1913 127 64 11 chr11 9281491 9281868 -141501685 - LTR1 LTR ERV1 -355 430 34 431 133 0 0 chr11 9281868 9281928 -141501625 - AluS SINE Alu -258 60 1 497 313 88 0 chr11 9281928 9282145 -141501408 - L1M4 LINE L1 -2873 3273 3038 511 320 47 33 chr11 9282502 9283190 -141500363 - HAL1 LINE L1 -838 1669 973 1430 191 85 34 chr11 9283947 9284512 -141499041 + Charlie2 DNA MER1_type 2044 2637 -225 269 286 20 31 chr11 9284643 9284741 -141498812 + L3 LINE CR1 1480 1576 -1 1825 205 63 14 chr11 9284922 9285226 -141498327 + MER63B DNA MER1_type 1 332 -730 1859 140 16 45 chr11 9285226 9285540 -141498013 - AluJo SINE Alu -7 305 1 1825 205 63 14 chr11 9285540 9285649 -141497904 + MER63B DNA MER1_type 332 434 -2 6020 96 27 8 chr11 9286420 9287828 -141495725 - L1PA15 LINE L1 -8 6157 4722 3678 154 70 35 chr11 9287883 9289445 -141494108 - L1MB7 LINE L1 -19 6165 4556 297 161 0 16 chr11 9292908 9292970 -141490583 - MER116 DNA Mariner -19 61 1 2620 90 28 3 chr11 9292975 9293330 -141490223 + THE1B LTR MaLR 1 364 0 942 244 76 21 chr11 9293348 9293676 -141489877 - L1MC4a LINE L1 -1868 5940 5595 213 39 0 0 chr11 9293829 9293855 -141489698 + (TCTCCC)n Simple_repeat Simple_repeat 4 29 0 6153 77 17 7 chr11 9293875 9295392 -141488161 + SVA Other Other 32 1369 -17 22 0 0 0 chr11 9295395 9295417 -141488136 + AT_rich Low_complexity Low_complexity 1 22 0 851 185 11 0 chr11 9295417 9295651 -141487902 + L1M2 LINE L1 5211 5446 -743 965 127 5 89 chr11 9295657 9295870 -141487683 + MER6 DNA MER2_type 671 865 0 787 237 28 0 chr11 9295871 9295924 -141487629 + L1MA10 LINE L1 6111 6161 -173 186 43 0 0 chr11 9295924 9295947 -141487606 + (TAA)n Simple_repeat Simple_repeat 2 24 0 787 237 28 0 chr11 9295947 9296104 -141487449 + L1MA10 LINE L1 6161 6327 -7 1651 263 56 24 chr11 9296115 9297193 -141486360 + L1M3 LINE L1 4416 5557 -614 1994 117 21 3 chr11 9297193 9297483 -141486070 + AluSc SINE Alu 1 295 -14 1651 263 56 24 chr11 9297483 9297746 -141485807 + L1M3 LINE L1 5557 5810 -361 248 195 67 65 chr11 9297844 9297987 -141485566 + L1ME3A LINE L1 5811 5955 -211 1749 138 35 48 chr11 9298040 9298351 -141485202 - AluSq SINE Alu -6 307 1 446 225 43 7 chr11 9298407 9298545 -141485008 + L1ME3A LINE L1 6022 6164 -6 22 35 0 0 chr11 9298980 9299009 -141484544 + AT_rich Low_complexity Low_complexity 1 29 0 1366 125 76 163 chr11 9299167 9299640 -141483913 + LTR23 LTR ERV1 1 432 -5 664 228 24 134 chr11 9299955 9300209 -141483344 - MIR SINE MIR -31 231 6 1622 212 102 36 chr11 9300562 9301034 -141482519 + MLT1D LTR MaLR 3 505 0 575 296 73 45 chr11 9301588 9301757 -141481796 + L1M4 LINE L1 2850 3013 -3133 2114 132 0 3 chr11 9301757 9302067 -141481486 - AluSx SINE Alu -3 309 1 575 296 73 45 chr11 9302067 9302387 -141481166 + L1M4 LINE L1 3013 3353 -2793 1220 236 143 31 chr11 9302414 9302930 -141480623 - MLT1G LTR MaLR -16 574 1 357 319 69 5 chr11 9302932 9303120 -141480433 + L1M4 LINE L1 3370 3569 -2577 494 341 39 0 chr11 9303141 9303323 -141480230 - MER5A DNA MER1_type 0 189 1 1245 210 0 0 chr11 9303331 9303555 -141479998 + MER58A DNA MER1_type 1 224 0 425 291 24 0 chr11 9303733 9303860 -141479693 + MER117 DNA MER1_type 68 197 0 2418 71 0 0 chr11 9305070 9305366 -141478187 + AluSq SINE Alu 2 297 -16 460 247 91 0 chr11 9305493 9305647 -141477906 - L1 LINE L1 -1037 5109 4942 37465 70 7 25 chr11 9305656 9311752 -141471801 - L1PA6 LINE L1 -168 5986 1 3181 175 434 9 chr11 9311751 9312973 -141470580 - L1 LINE L1 -1189 4957 3217 * 603 277 148 57 chr11 9312978 9313473 -141470080 - L1MEd LINE L1 -5028 1091 552 3756 92 24 16 chr11 9313875 9314450 -141469103 + L1MA3 LINE L1 5726 6305 0 5146 225 67 42 chr11 9317117 9317699 -141465854 - L1ME2 LINE L1 0 6164 5598 2089 113 14 0 chr11 9317699 9317990 -141465563 + AluY SINE Alu 1 295 -16 5146 225 67 42 chr11 9317990 9318697 -141464856 - L1ME2 LINE L1 -566 5598 4910 2624 39 0 3 chr11 9318697 9319006 -141464547 + AluY SINE Alu 1 308 -3 5146 225 67 42 chr11 9319006 9320451 -141463102 - L1ME2 LINE L1 -1254 4910 3365 998 255 91 0 chr11 9320460 9320844 -141462709 + L1MDa LINE L1 1395 1813 -4727 475 250 58 21 chr11 9320865 9321053 -141462500 + L1MDa LINE L1 2095 2289 -4432 2235 169 37 13 chr11 9321482 9321989 -141461564 - MER68 LTR ERV1 0 562 1 335 320 76 20 chr11 9322163 9322360 -141461193 - MLT1H LTR MaLR -292 257 50 685 264 181 0 chr11 9322620 9322836 -141460717 - MIR SINE MIR -2 260 6 2289 125 0 0 chr11 9323297 9323609 -141459944 - AluSx SINE Alu 0 312 1 183 80 0 0 chr11 9324290 9324315 -141459238 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 610 311 18 58 chr11 9324400 9324677 -141458876 - L3 LINE CR1 -5 1572 1307 244 187 0 44 chr11 9324945 9325036 -141458517 + (TATATG)n Simple_repeat Simple_repeat 5 91 0 1055 176 20 20 chr11 9325925 9326124 -141457429 + MER58A DNA MER1_type 26 224 0 1695 167 62 0 chr11 9328377 9328682 -141454871 + Tigger6a DNA MER2_type 2 325 -758 753 164 14 0 chr11 9328677 9328817 -141454736 + Tigger6a DNA MER2_type 366 507 -576 * 1611 187 49 6 chr11 9328819 9329167 -141454386 + Tigger6a DNA MER2_type 720 1082 -1 206 234 31 47 chr11 9330020 9330084 -141453469 + L2 LINE L2 3251 3313 0 675 269 137 15 chr11 9330261 9330596 -141452957 + L1MC/D LINE L1 5374 5749 -2059 5740 139 28 16 chr11 9330650 9331994 -141451559 - L1PA14 LINE L1 0 6161 4803 2508 172 0 0 chr11 9332195 9332630 -141450923 - L1P LINE L1 -1215 4931 4497 855 133 47 0 chr11 9332871 9332999 -141450554 - AluJo SINE Alu -178 134 1 1569 144 72 22 chr11 9333608 9333885 -141449668 + AluJo SINE Alu 3 293 -19 1383 292 108 15 chr11 9333969 9334862 -141448691 - L1M4 LINE L1 -924 5222 4247 1086 94 29 12 chr11 9336255 9336425 -141447128 + MER30 DNA MER1_type 1 173 -57 293 319 142 35 chr11 9336515 9336656 -141446897 + L2 LINE L2 3117 3272 0 2389 87 0 0 chr11 9336724 9337022 -141446531 - AluSg SINE Alu -12 298 1 248 294 59 73 chr11 9337855 9337991 -141445562 + L2 LINE L2 3139 3272 0 238 309 0 15 chr11 9338064 9338132 -141445421 - MER5A DNA MER1_type 0 189 123 1596 298 63 21 chr11 9339222 9339796 -141443757 + L2 LINE L2 2111 2708 -606 2011 92 18 95 chr11 9339800 9340127 -141443426 + AluSc SINE Alu 1 302 -7 215 281 62 0 chr11 9340169 9340233 -141443320 + L2 LINE L2 3242 3309 -4 907 260 115 11 chr11 9340398 9340667 -141442886 - MLT1J LTR MaLR -59 452 156 270 304 87 9 chr11 9340801 9340916 -141442637 - L2 LINE L2 -27 3286 3163 27 0 0 0 chr11 9342020 9342047 -141441506 + AT_rich Low_complexity Low_complexity 1 27 0 2175 123 0 0 chr11 9342554 9342855 -141440698 - AluSx SINE Alu -11 301 1 250 325 133 21 chr11 9345038 9345226 -141438327 - L2 LINE L2 -1 3312 3104 204 40 0 0 chr11 9345629 9345654 -141437899 + (CATGC)n Simple_repeat Simple_repeat 3 27 0 245 116 58 0 chr11 9345675 9345744 -141437809 + (TA)n Simple_repeat Simple_repeat 1 73 0 336 360 75 18 chr11 9345767 9346045 -141437508 - L2 LINE L2 -570 2744 2451 23 33 0 0 chr11 9346440 9346470 -141437083 + AT_rich Low_complexity Low_complexity 1 30 0 1677 184 3 20 chr11 9347217 9347516 -141436037 - AluJo SINE Alu -18 294 1 335 250 30 50 chr11 9347711 9347811 -141435742 - MIR SINE MIR -86 176 79 357 93 0 0 chr11 9347874 9347928 -141435625 + (CA)n Simple_repeat Simple_repeat 2 55 0 1438 151 94 51 chr11 9348631 9348982 -141434571 + L1ME2 LINE L1 5799 6164 0 538 289 98 100 chr11 9349113 9349583 -141433970 + L1ME1 LINE L1 2636 3106 -3040 1480 187 20 47 chr11 9349583 9349883 -141433670 + AluJo SINE Alu 8 299 -13 538 289 98 100 chr11 9349883 9349993 -141433560 + L1ME1 LINE L1 3106 3215 -2931 299 268 37 0 chr11 9350093 9350175 -141433378 - MIR SINE MIR -29 233 149 579 269 0 7 chr11 9350252 9350393 -141433160 + L2 LINE L2 3172 3311 -2 227 335 16 11 chr11 9350458 9350640 -141432913 + L1ME1 LINE L1 3300 3482 -2664 432 127 0 14 chr11 9350730 9350801 -141432752 - L1P LINE L1 -1475 4671 4602 6060 83 16 10 chr11 9350906 9351565 -141431988 + L1PA7 LINE L1 4711 5364 -790 15285 30 7 0 chr11 9351565 9354158 -141429395 + L1PA4 LINE L1 3550 6154 -1 6060 55 1 7 chr11 9354163 9354933 -141428620 + L1PA7 LINE L1 5387 6152 -2 6060 83 16 10 chr11 9354933 9354960 -141428593 + L1PA7 LINE L1 5367 6152 -2 427 255 204 4 chr11 9355024 9355255 -141428298 + L1ME1 LINE L1 3638 3914 -2232 * 3123 189 22 84 chr11 9355243 9356178 -141427375 + L1ME1 LINE L1 5318 6176 -2 2070 128 7 0 chr11 9356289 9356579 -141426974 + AluSx SINE Alu 1 292 -20 1529 164 13 34 chr11 9356866 9357164 -141426389 + AluJb SINE Alu 1 292 -20 22 0 0 0 chr11 9357747 9357769 -141425784 + AT_rich Low_complexity Low_complexity 1 22 0 448 262 93 0 chr11 9358321 9358428 -141425125 - L2 LINE L2 0 3313 3197 2210 90 0 10 chr11 9359892 9360182 -141423371 + AluY SINE Alu 1 287 -24 317 200 167 22 chr11 9360334 9360424 -141423129 + MIR SINE MIR 49 151 -57 1483 127 139 11 chr11 9360533 9360800 -141422753 + L1MC1 LINE L1 6025 6325 -8 345 343 98 59 chr11 9361380 9361888 -141421665 - L2 LINE L2 0 3272 2732 998 238 116 47 chr11 9361969 9362288 -141421265 - MER58B DNA MER1_type 0 341 1 207 322 20 72 chr11 9362461 9362613 -141420940 - L3 LINE CR1 -591 986 843 4218 246 85 10 chr11 9363249 9364569 -141418984 + L1MEc LINE L1 35 1453 -4943 785 270 0 38 chr11 9364926 9365137 -141418416 - MIR SINE MIR -54 208 6 459 224 0 0 chr11 9366316 9366423 -141417130 + (TA)n Simple_repeat Simple_repeat 2 108 0 363 163 0 0 chr11 9366493 9366573 -141416980 + GA-rich Low_complexity Low_complexity 1 80 0 2159 116 0 54 chr11 9367099 9367452 -141416101 - MER1B DNA MER1_type 0 337 4 2209 137 19 25 chr11 9369829 9370195 -141413358 - THE1B LTR MaLR 0 364 1 11707 88 14 6 chr11 9370195 9371703 -141411850 - THE1B-int LTR MaLR 0 1580 58 2179 127 0 0 chr11 9371703 9371995 -141411558 + AluSc SINE Alu 1 292 -17 11707 88 14 6 chr11 9371995 9372054 -141411499 - THE1B-int LTR MaLR -1522 58 1 2245 121 28 25 chr11 9372054 9372417 -141411136 - THE1B LTR MaLR 0 364 1 13779 130 61 3 chr11 9372838 9375121 -141408432 - Tigger1 DNA MER2_type 0 2418 2 325 300 8 8 chr11 9375557 9375687 -141407866 + HAL1b LINE L1 1209 1338 -10 24 0 0 0 chr11 9375949 9375973 -141407580 + AT_rich Low_complexity Low_complexity 1 24 0 1668 186 3 14 chr11 9375976 9376267 -141407286 - AluJo SINE Alu -24 288 1 1474 166 70 0 chr11 9376385 9376644 -141406909 - Tigger1 DNA MER2_type -1912 506 230 25 75 0 0 chr11 9376704 9376757 -141406796 + AT_rich Low_complexity Low_complexity 1 53 0 24 0 0 0 chr11 9377323 9377347 -141406206 + AT_rich Low_complexity Low_complexity 1 24 0 1094 210 39 11 chr11 9377929 9378215 -141405338 + AluSq SINE Alu 1 294 -9 322 345 16 41 chr11 9378555 9378749 -141404804 + L1MC4a LINE L1 7227 7415 -393 1205 182 11 42 chr11 9378753 9378883 -141404670 - L1MDb LINE L1 -4793 1534 1401 1602 155 44 73 chr11 9378883 9379088 -141404465 - AluJo SINE Alu -4 308 114 2347 98 3 0 chr11 9379088 9379394 -141404159 - AluSx SINE Alu -4 308 2 1602 155 44 73 chr11 9379394 9379505 -141404048 - AluJo SINE Alu -198 114 1 1205 182 11 42 chr11 9379505 9379713 -141403840 - L1MDb LINE L1 -4926 1401 929 742 104 9 14 chr11 9379741 9379957 -141403596 + AluSg SINE Alu 2 310 0 1608 175 14 7 chr11 9380021 9380313 -141403240 + AluJb SINE Alu 1 294 -18 1099 220 46 9 chr11 9380350 9380568 -141402985 - MIR SINE MIR -31 231 6 199 161 0 0 chr11 9380834 9380865 -141402688 + L2 LINE L2 3241 3271 -1 2763 210 28 58 chr11 9382051 9382314 -141401239 + L1MA9 LINE L1 5521 5790 -522 1443 208 26 29 chr11 9382314 9382626 -141400927 + AluJo SINE Alu 1 311 -1 2763 210 28 58 chr11 9382626 9383082 -141400471 + L1MA9 LINE L1 5790 6218 -94 261 0 0 0 chr11 9383082 9383111 -141400442 + (TC)n Simple_repeat Simple_repeat 2 30 0 2763 210 28 58 chr11 9383111 9383166 -141400387 + L1MA9 LINE L1 6218 6273 -39 22 35 0 0 chr11 9383263 9383292 -141400261 + AT_rich Low_complexity Low_complexity 1 29 0 1056 180 43 5 chr11 9384529 9384740 -141398813 + MER20 DNA MER1_type 1 219 0 1810 129 43 7 chr11 9384844 9385123 -141398430 - AluJb SINE Alu -21 291 3 3103 91 24 4 chr11 9385549 9386011 -141397542 + L1MA1 LINE L1 5832 6302 0 1874 46 0 13 chr11 9386124 9386362 -141397191 - L1PA7 LINE L1 0 6154 5920 334 136 25 0 chr11 9386415 9386496 -141397057 + (TA)n Simple_repeat Simple_repeat 2 84 0 268 341 23 8 chr11 9387701 9387830 -141395723 - L2 LINE L2 -4 3309 3179 421 164 2 0 chr11 9387853 9387936 -141395617 + L1 LINE L1 4657 4740 -1406 2884 131 49 10 chr11 9387936 9388426 -141395127 - Tigger3(Golem) DNA MER2_type 0 3029 2521 6134 166 48 29 chr11 9388426 9389320 -141394233 - L1MA4 LINE L1 -11 6289 5413 2320 100 3 0 chr11 9389320 9389631 -141393922 - AluSq SINE Alu -1 312 1 6134 166 48 29 chr11 9389631 9389919 -141393634 - L1MA4 LINE L1 -887 5413 5132 3155 32 0 0 chr11 9389919 9390292 -141393261 + L1PA5 LINE L1 5782 6154 0 6134 166 48 29 chr11 9390292 9392059 -141391494 - L1MA4 LINE L1 -1168 5132 3177 349 138 11 23 chr11 9392377 9392464 -141391089 - L1MA4 LINE L1 -2952 3194 3109 709 122 0 0 chr11 9392464 9392562 -141390991 - AluSg SINE Alu -212 98 1 3394 89 16 10 chr11 9392562 9393056 -141390497 - THE1B-int LTR MaLR -1083 497 1 820 137 75 27 chr11 9393067 9393213 -141390340 - THE1B LTR MaLR -15 349 197 2045 156 0 0 chr11 9393252 9393547 -141390006 - AluSx SINE Alu -17 295 1 743 289 0 5 chr11 9393547 9393758 -141389795 - L1M3b LINE L1 -4976 1305 1096 852 323 46 32 chr11 9394023 9394524 -141389029 - L1M3b LINE L1 -5769 512 5 1708 82 10 33 chr11 9394524 9394827 -141388726 - Tigger3(Golem) DNA MER2_type -486 2543 2248 2013 132 0 7 chr11 9394931 9395220 -141388333 + AluSp SINE Alu 10 296 -17 520 196 142 88 chr11 9396248 9396488 -141387065 - MER112 DNA MER1_type 0 260 8 334 239 36 56 chr11 9397111 9397287 -141386266 + MLT1L LTR MaLR 7 138 -308 736 272 111 0 chr11 9397447 9397749 -141385804 + L2 LINE L2 2793 3138 -175 366 23 0 0 chr11 9398171 9398214 -141385339 + (CA)n Simple_repeat Simple_repeat 2 44 0 2170 70 10 73 chr11 9400164 9400478 -141383075 + AluSc SINE Alu 1 294 -15 2199 128 0 0 chr11 9400592 9400897 -141382656 + AluSx SINE Alu 1 305 -7 182 241 19 74 chr11 9400925 9400979 -141382574 + L2 LINE L2 3215 3265 -7 425 242 245 49 chr11 9401042 9401368 -141382185 + L3 LINE CR1 1181 1570 -7 22 0 0 0 chr11 9402342 9402364 -141381189 + AT_rich Low_complexity Low_complexity 1 22 0 222 270 16 16 chr11 9402387 9402450 -141381103 + L2 LINE L2 3150 3212 -60 303 277 8 108 chr11 9403691 9403736 -141379817 + MIR SINE MIR 119 167 -95 2351 68 0 7 chr11 9403736 9404062 -141379491 - AluY SINE Alu 0 311 1 303 277 8 108 chr11 9404062 9404146 -141379407 + MIR SINE MIR 167 235 -27 385 331 16 8 chr11 9404178 9404302 -141379251 - L2 LINE L2 -221 3051 2927 1031 321 67 29 chr11 9406958 9407683 -141375870 + L2 LINE L2 2464 3203 -69 763 326 112 58 chr11 9407692 9408173 -141375380 - L2 LINE L2 -584 2730 2192 1926 147 13 0 chr11 9408173 9408472 -141375081 + AluJb SINE Alu 1 303 -9 763 326 112 58 chr11 9408472 9408748 -141374805 - L2 LINE L2 -1122 2192 1932 5825 211 26 44 chr11 9408780 9410006 -141373547 + L1M4 LINE L1 8 1254 -5288 1781 187 10 3 chr11 9410006 9410316 -141373237 + AluJo SINE Alu 1 312 0 5825 211 26 44 chr11 9410316 9410397 -141373156 + L1M4 LINE L1 1254 1335 -5207 1660 201 55 26 chr11 9410397 9410780 -141372773 - MSTD LTR MaLR 0 396 3 5825 211 26 44 chr11 9410780 9410962 -141372591 + L1M4 LINE L1 1335 1472 -5070 38449 83 4 7 chr11 9410980 9417133 -141366420 + L1PA6 LINE L1 11 6147 -7 225 214 0 0 chr11 9417142 9417184 -141366369 + A-rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr11 9417568 9417591 -141365962 + AT_rich Low_complexity Low_complexity 1 23 0 2516 61 0 0 chr11 9417608 9417903 -141365650 - AluY SINE Alu -16 295 1 1576 189 32 74 chr11 9418113 9418496 -141365057 + L1M4 LINE L1 1464 1825 -4821 2047 129 30 3 chr11 9418496 9418791 -141364762 - AluJb SINE Alu -9 303 1 1576 189 32 74 chr11 9418791 9418878 -141364675 + L1M4 LINE L1 1825 1914 -4732 888 219 25 21 chr11 9418887 9419125 -141364428 + L1M4 LINE L1 4137 4375 -2269 506 143 0 12 chr11 9619134 9619218 -141164335 - AluJ/FLAM SINE Alu -228 84 2 2185 93 0 4 chr11 9619282 9619562 -141163991 + AluSx SINE Alu 20 298 -14 21 36 0 0 chr11 9621296 9621324 -141162229 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 9621395 9621554 -141161999 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 9621554 9621632 -141161921 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 9621761 9621794 -141161759 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 9622327 9622628 -141160925 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 9623647 9623882 -141159671 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 9624397 9624490 -141159063 + MER5B DNA MER1_type 24 116 -62 1784 136 63 14 chr11 9624507 9624793 -141158760 - AluSx SINE Alu -12 300 1 1739 165 7 34 chr11 9625142 9625439 -141158114 + AluJo SINE Alu 1 289 -23 2264 107 0 3 chr11 9625442 9625740 -141157813 + AluSx SINE Alu 1 297 -15 261 0 0 0 chr11 9625741 9625770 -141157783 + (TA)n Simple_repeat Simple_repeat 1 29 0 2286 95 0 0 chr11 9626069 9626380 -141157173 + AluSx SINE Alu 1 311 0 1269 113 0 11 chr11 9626384 9626570 -141156983 + AluSg/x SINE Alu 129 312 0 2258 74 14 7 chr11 9627452 9627737 -141155816 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 9627740 9627769 -141155784 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2077 152 0 0 chr11 9627859 9628162 -141155391 - AluSx SINE Alu -9 303 1 1999 132 16 13 chr11 9628539 9628850 -141154703 + AluSq SINE Alu 1 312 -1 318 50 0 0 chr11 9628985 9629025 -141154528 + (TG)n Simple_repeat Simple_repeat 1 40 0 299 328 51 69 chr11 9630075 9630407 -141153146 + L2 LINE L2 2925 3250 -22 1768 150 27 14 chr11 9630584 9630877 -141152676 + AluJb SINE Alu 11 307 -5 1985 149 0 0 chr11 9631062 9631366 -141152187 + AluJo SINE Alu 1 304 0 2269 107 0 0 chr11 9631432 9631721 -141151832 - AluSg SINE Alu -21 289 1 3060 141 29 72 chr11 9632129 9632178 -141151375 + MER41D LTR ERV1 1 51 -506 2127 97 19 55 chr11 9632178 9632488 -141151065 - AluSx SINE Alu -13 299 1 3060 141 29 72 chr11 9632488 9632666 -141150887 + MER41D LTR ERV1 51 235 -322 1993 138 13 7 chr11 9632666 9632971 -141150582 + AluJo SINE Alu 1 307 -5 3060 141 29 72 chr11 9632971 9633198 -141150355 + MER41D LTR ERV1 235 428 -129 2222 112 3 3 chr11 9633198 9633494 -141150059 - AluSx SINE Alu -16 296 1 3060 141 29 72 chr11 9633494 9633619 -141149934 + MER41D LTR ERV1 428 557 0 412 224 213 11 chr11 9633670 9633844 -141149709 - MLT1K LTR MaLR 0 588 380 189 0 0 0 chr11 9634091 9634112 -141149441 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 9634126 9634340 -141149213 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 9634340 9634632 -141148921 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 9634871 9635130 -141148423 - AluSq SINE Alu -53 260 1 237 277 128 69 chr11 9635395 9635583 -141147970 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 9635602 9635908 -141147645 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 9635930 9636256 -141147297 + L2 LINE L2 1728 2088 -1226 3356 142 2 31 chr11 9636277 9636818 -141146735 + MER1A DNA MER1_type 1 525 -2 218 341 57 0 chr11 9636885 9636973 -141146580 + MIR SINE MIR 48 140 -122 2234 116 0 6 chr11 9637034 9637345 -141146208 + AluSg SINE Alu 1 309 -1 2436 84 3 0 chr11 9638324 9638634 -141144919 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 9638635 9638936 -141144617 - AluSg1 SINE Alu -8 301 1 384 77 0 0 chr11 9640063 9640115 -141143438 + (TG)n Simple_repeat Simple_repeat 1 52 0 2180 98 10 3 chr11 9640236 9640532 -141143021 - AluSx SINE Alu -13 299 2 2271 111 3 0 chr11 9640535 9640832 -141142721 - AluSg SINE Alu -12 298 1 2275 108 3 3 chr11 9641002 9641307 -141142246 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 9641448 9641593 -141141960 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 9641626 9641723 -141141830 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 9641819 9641990 -141141563 + AluSg/x SINE Alu 113 286 -24 1588 190 6 25 chr11 9642624 9642950 -141140603 - 7SLRNA srpRNA srpRNA 0 320 1 1008 238 114 65 chr11 9643003 9643100 -141140453 - L1MC4a LINE L1 -1944 5864 5773 2149 105 23 10 chr11 9643100 9643405 -141140148 + AluSg SINE Alu 1 309 -1 1008 238 114 65 chr11 9643405 9643596 -141139957 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 9643596 9643630 -141139923 + (CA)n Simple_repeat Simple_repeat 2 35 0 1008 238 114 65 chr11 9643630 9643786 -141139767 - L1MC4a LINE L1 -2215 5593 5397 1989 86 4 0 chr11 9644694 9644986 -141138567 + AluSg SINE Alu 37 329 0 562 192 0 0 chr11 9645736 9645835 -141137718 - U13 snRNA snRNA -2 102 4 191 261 11 57 chr11 9647562 9647650 -141135903 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 9649292 9649349 -141134204 + GC_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr11 9649449 9649470 -141134083 + GC_rich Low_complexity Low_complexity 1 21 0 35 78 0 0 chr11 9649668 9649745 -141133808 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 9649800 9649831 -141133722 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 9649876 9649907 -141133646 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 9650399 9650432 -141133121 + GC_rich Low_complexity Low_complexity 1 33 0 2266 98 3 22 chr11 9651155 9651471 -141132082 - AluSx SINE Alu -2 310 1 1933 92 32 51 chr11 9651526 9651840 -141131713 - AluSx SINE Alu -4 308 1 1737 139 7 36 chr11 9652451 9652752 -141130801 - AluJb SINE Alu -10 302 11 1875 167 3 10 chr11 9653293 9653592 -141129961 + AluJb SINE Alu 4 300 -12 2035 153 3 0 chr11 9653993 9654294 -141129259 - AluJb SINE Alu -10 302 1 304 293 151 46 chr11 9654321 9654560 -141128993 + L2 LINE L2 3009 3272 0 2579 53 0 0 chr11 9655710 9656013 -141127540 - AluY SINE Alu -8 303 1 1885 147 17 3 chr11 9656089 9656382 -141127171 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr11 9656618 9656639 -141126914 + AT_rich Low_complexity Low_complexity 1 21 0 309 0 0 0 chr11 9657269 9657305 -141126248 - MER11C LTR ERVK -1035 36 1 378 254 152 0 chr11 9658046 9658184 -141125369 - MIR SINE MIR -10 252 94 35 0 0 0 chr11 9658234 9658269 -141125284 + AT_rich Low_complexity Low_complexity 1 35 0 1748 146 46 30 chr11 9658297 9658599 -141124954 - AluJo SINE Alu -5 307 1 414 271 33 33 chr11 9658916 9659067 -141124486 - L2 LINE L2 -193 3120 2970 2077 148 0 0 chr11 9659221 9659519 -141124034 + AluSx SINE Alu 1 298 -14 2069 120 7 13 chr11 9659638 9659937 -141123616 + AluSx SINE Alu 1 297 -15 9501 125 38 66 chr11 9659955 9661070 -141122483 + L1M1 LINE L1 22 1167 -6398 1924 168 13 0 chr11 9661070 9661373 -141122180 + AluSx SINE Alu 1 307 -5 9501 125 38 66 chr11 9661373 9662673 -141120880 + L1M1 LINE L1 1167 3044 -4521 1305 173 35 35 chr11 9662673 9662933 -141120620 + AluJo SINE Alu 45 304 -8 9621 146 23 39 chr11 9662933 9663079 -141120474 + L1M1 LINE L1 3038 3185 -4380 2190 113 0 0 chr11 9663079 9663403 -141120150 + AluSg SINE Alu 1 324 0 9621 146 23 39 chr11 9663403 9664009 -141119544 + L1M1 LINE L1 3185 3800 -3765 2430 93 0 0 chr11 9664009 9664309 -141119244 + AluSx SINE Alu 1 300 -12 9621 146 23 39 chr11 9664309 9664972 -141118581 + L1M1 LINE L1 3800 4473 -3092 1782 164 4 11 chr11 9664972 9665282 -141118271 + AluSx SINE Alu 3 310 0 9621 146 23 39 chr11 9665282 9665455 -141118098 + L1M1 LINE L1 4473 4647 -2918 2321 70 40 7 chr11 9665455 9665756 -141117797 + AluY SINE Alu 1 311 0 9621 146 23 39 chr11 9665756 9666314 -141117239 + L1M1 LINE L1 4647 5213 -2352 9412 96 8 21 chr11 9666314 9667617 -141115936 - HSMAR1 DNA Mariner 0 1287 3 9621 146 23 39 chr11 9667617 9667873 -141115680 + L1M1 LINE L1 5213 5472 -2093 2287 108 0 7 chr11 9667873 9668178 -141115375 + AluSq SINE Alu 1 303 -10 9621 146 23 39 chr11 9668178 9668512 -141115041 + L1M1 LINE L1 5472 5742 -1823 2260 119 0 0 chr11 9668596 9668890 -141114663 + AluSg SINE Alu 1 294 -16 1183 110 0 0 chr11 9668890 9669054 -141114499 + L1MA2 LINE L1 6141 6304 0 21 36 0 0 chr11 9669054 9669082 -141114471 + AT_rich Low_complexity Low_complexity 1 28 0 2296 109 3 0 chr11 9669664 9669968 -141113585 - AluSx SINE Alu -7 305 1 2432 46 0 3 chr11 9670213 9670529 -141113024 - AluY SINE Alu 0 315 1 359 210 76 59 chr11 9670614 9670733 -141112820 - L1M4 LINE L1 -1964 4182 4062 2205 87 17 3 chr11 9670754 9671043 -141112510 + AluSx SINE Alu 1 293 -19 4207 139 70 3 chr11 9671044 9671718 -141111835 - Tigger1 DNA MER2_type -1655 763 45 2046 155 0 3 chr11 9671718 9672027 -141111526 + AluSx SINE Alu 1 308 -4 327 154 0 0 chr11 9672066 9672118 -141111435 + Tigger7 DNA MER2_type 5 56 -283 296 164 36 0 chr11 9672139 9672194 -141111359 - Tigger1 DNA MER2_type -2361 57 1 32 44 0 29 chr11 9672215 9672266 -141111287 + AT_rich Low_complexity Low_complexity 1 51 -15 2237 104 3 0 chr11 9672266 9672553 -141111000 - AluSx SINE Alu -24 288 1 32 44 0 29 chr11 9672553 9672569 -141110984 + AT_rich Low_complexity Low_complexity 51 66 0 266 254 62 110 chr11 9672846 9673120 -141110433 - L1P LINE L1 -2705 3441 3155 2519 64 3 0 chr11 9673120 9673416 -141110137 - AluSg SINE Alu -13 297 1 1713 190 7 0 chr11 9673423 9673713 -141109840 - AluJo SINE Alu -20 292 1 266 254 62 110 chr11 9673713 9673930 -141109623 - L1P LINE L1 -2997 3149 2966 907 217 211 29 chr11 9673970 9674086 -141109467 - L1ME3A LINE L1 0 6170 6076 634 201 107 53 chr11 9674086 9674166 -141109387 - MER45A DNA AcHobo -1403 178 104 2441 71 0 0 chr11 9674166 9674470 -141109083 + AluSx SINE Alu 1 304 0 634 201 107 53 chr11 9674470 9674557 -141108996 - MER45A DNA AcHobo -1477 104 1 907 217 211 29 chr11 9674557 9674753 -141108800 - L1ME3A LINE L1 -94 6076 5801 1934 165 0 0 chr11 9674765 9675062 -141108491 + AluSx SINE Alu 1 297 -15 44036 33 21 1 chr11 9675125 9681155 -141102398 + L1PA3 LINE L1 3 6155 0 292 47 0 0 chr11 9681719 9681762 -141101791 + AluY SINE Alu 259 301 0 22 56 0 0 chr11 9681942 9681978 -141101575 + AT_rich Low_complexity Low_complexity 1 36 0 1883 154 11 0 chr11 9681993 9682278 -141101275 + AluJb SINE Alu 1 288 -24 1378 136 0 0 chr11 9682278 9682476 -141101077 + AluSg/x SINE Alu 107 304 -6 878 178 6 30 chr11 9682479 9682648 -141100905 + AluJo/FRAM SINE Alu 137 301 -1 408 141 0 16 chr11 9682652 9682716 -141100837 - MLT1D LTR MaLR -442 63 1 260 179 179 15 chr11 9682797 9682864 -141100689 - L1ME3A LINE L1 -2029 5779 5702 1572 161 3 49 chr11 9682939 9683243 -141100310 + AluJb SINE Alu 1 290 -22 1566 150 135 0 chr11 9683256 9683522 -141100031 + AluSx SINE Alu 1 302 0 781 226 52 0 chr11 9683539 9683694 -141099859 + FRAM SINE Alu 4 166 0 272 309 49 0 chr11 9683697 9683778 -141099775 - L1ME3A LINE L1 -2289 5519 5435 2606 67 0 3 chr11 9683784 9684096 -141099457 - AluY SINE Alu 0 311 1 353 196 20 20 chr11 9684130 9684232 -141099321 - L1ME3A LINE L1 -2360 5448 5347 1986 116 0 0 chr11 9684286 9684544 -141099009 + AluSx SINE Alu 1 258 -54 195 42 0 0 chr11 9684603 9684627 -141098926 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 2452 78 3 3 chr11 9685192 9685500 -141098053 + AluSq SINE Alu 1 308 -5 2235 104 0 3 chr11 9685500 9685797 -141097756 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr11 9686606 9686626 -141096927 + (T)n Simple_repeat Simple_repeat 1 20 0 1140 188 76 144 chr11 9686879 9687036 -141096517 - MER4C LTR ERV1 0 465 299 2692 88 119 12 chr11 9687036 9687456 -141096097 - MER4C LTR ERV1 0 465 1 1140 188 76 144 chr11 9687456 9687797 -141095756 - MER4C LTR ERV1 -166 299 1 496 194 39 10 chr11 9688179 9688282 -141095271 - MER45B DNA AcHobo 0 1040 935 1163 108 84 25 chr11 9688282 9688355 -141095198 + L1MB3 LINE L1 5887 5954 -229 2014 100 0 81 chr11 9688355 9688696 -141094857 + AluSx SINE Alu 1 316 0 1163 108 84 25 chr11 9688696 9688824 -141094729 + L1MB3 LINE L1 5954 6101 -82 1107 162 0 0 chr11 9688824 9688997 -141094556 + MER2 DNA MER2_type 1 173 -172 915 132 0 0 chr11 9689092 9689221 -141094332 - FLAM_C SINE Alu -9 134 6 450 138 0 0 chr11 9689225 9689290 -141094263 + MER2 DNA MER2_type 271 335 -10 292 124 106 4 chr11 9689311 9689383 -141094170 + L1MB3 LINE L1 6100 6180 0 999 176 50 31 chr11 9689393 9689477 -141094076 - MER45B DNA AcHobo -643 938 857 2289 100 3 3 chr11 9689477 9689777 -141093776 + AluSx SINE Alu 1 300 -12 999 176 50 31 chr11 9689777 9689914 -141093639 - MER45B DNA AcHobo -724 857 713 1098 265 87 47 chr11 9690104 9690544 -141093009 - MER45C DNA AcHobo -347 606 101 1860 148 45 0 chr11 9690544 9690835 -141092718 + AluJb SINE Alu 1 304 -8 1098 265 87 47 chr11 9690835 9690941 -141092612 - MER45C DNA AcHobo -852 101 1 393 270 35 47 chr11 9692639 9692839 -141090714 + MIR SINE MIR 17 213 -49 23 54 0 0 chr11 9692944 9692981 -141090572 + AT_rich Low_complexity Low_complexity 1 37 0 1048 141 0 40 chr11 9694218 9694357 -141089196 + AluJo SINE Alu 1 133 -179 2262 70 3 33 chr11 9694357 9694659 -141088894 + AluY SINE Alu 1 293 -18 1048 141 0 40 chr11 9694659 9694696 -141088857 + AluJo SINE Alu 133 170 -142 823 138 0 0 chr11 9694750 9694866 -141088687 + FLAM_C SINE Alu 3 118 -15 26 50 0 0 chr11 9694866 9694906 -141088647 + AT_rich Low_complexity Low_complexity 1 40 0 1567 114 5 0 chr11 9695126 9695337 -141088216 - AluJb SINE Alu -20 292 81 1690 166 7 14 chr11 9695340 9695630 -141087923 - AluJb SINE Alu -24 288 1 634 246 66 44 chr11 9697065 9697293 -141086260 + L1ME LINE L1 1 233 -5837 255 327 18 0 chr11 9697313 9697423 -141086130 + L1ME LINE L1 290 401 -5669 2336 93 7 0 chr11 9697424 9697725 -141085828 - AluSx SINE Alu -9 303 1 24 0 0 0 chr11 9697727 9697751 -141085802 + AT_rich Low_complexity Low_complexity 1 24 0 2565 31 0 3 chr11 9697751 9698039 -141085514 - AluY SINE Alu -24 287 1 431 272 0 0 chr11 9698301 9698415 -141085138 + L1ME LINE L1 526 639 -5431 1488 88 0 34 chr11 9698422 9698626 -141084927 + AluSq SINE Alu 1 197 -116 2381 89 3 0 chr11 9698697 9699000 -141084553 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr11 9699079 9699100 -141084453 + AT_rich Low_complexity Low_complexity 1 21 0 469 217 0 0 chr11 9699102 9699194 -141084359 + FLAM_A SINE Alu 2 93 -49 413 125 0 0 chr11 9699211 9699267 -141084286 - AluS SINE Alu -260 58 3 360 205 197 0 chr11 9699270 9699397 -141084156 - L1M4 LINE L1 -3016 3130 2979 2143 123 3 3 chr11 9699406 9699708 -141083845 - AluSx SINE Alu -10 302 1 1030 244 32 86 chr11 9699710 9699892 -141083661 + L1M4 LINE L1 3314 3504 -2642 180 0 0 0 chr11 9699892 9699912 -141083641 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1030 244 32 86 chr11 9699912 9700195 -141083358 + L1M4 LINE L1 3504 3750 -2396 1659 158 25 19 chr11 9700195 9700511 -141083042 + L1MC1 LINE L1 6016 6333 0 1030 244 32 86 chr11 9700511 9700569 -141082984 + L1M4 LINE L1 3750 3810 -2336 446 168 69 20 chr11 9700580 9700681 -141082872 + L1ME2 LINE L1 5419 5524 -638 469 110 27 0 chr11 9700681 9700754 -141082799 - AluSg SINE Alu -6 306 232 1061 198 37 8 chr11 9700862 9701105 -141082448 - AluSg SINE Alu -60 250 1 1320 176 18 116 chr11 9701107 9701309 -141082244 - AluJo SINE Alu -5 297 138 2182 89 3 0 chr11 9701309 9701591 -141081962 + AluSx SINE Alu 30 312 0 1320 176 18 116 chr11 9701591 9701717 -141081836 - AluJo SINE Alu -164 138 1 2004 205 45 2 chr11 9701755 9702175 -141081378 + L1ME2 LINE L1 5513 5950 -214 596 87 0 12 chr11 9702175 9702405 -141081148 + AluSx SINE Alu 1 296 -16 908 191 70 23 chr11 9702406 9702621 -141080932 + L1ME2 LINE L1 5940 6164 0 2372 76 0 13 chr11 9702885 9703189 -141080364 - AluSq SINE Alu -13 300 1 430 86 0 0 chr11 9703189 9703247 -141080306 - L1M LINE L1 -755 5423 5366 * 435 173 21 21 chr11 9703223 9703318 -141080235 - L1ME LINE L1 -589 5575 5481 763 217 50 75 chr11 9703352 9703871 -141079682 - L1ME LINE L1 -663 5501 5000 1367 213 167 35 chr11 9703944 9704399 -141079154 + L1MC4a LINE L1 5384 5898 -1910 1398 108 159 47 chr11 9704430 9704662 -141078891 + AluJb SINE Alu 1 258 -54 434 281 65 7 chr11 9704978 9705131 -141078422 - MIR SINE MIR -3 259 98 1710 184 0 16 chr11 9705605 9705921 -141077632 - AluJo SINE Alu 0 312 2 2401 89 0 16 chr11 9705936 9706251 -141077302 - AluY SINE Alu 0 311 2 2366 80 14 0 chr11 9706485 9706773 -141076780 - AluSp SINE Alu -21 292 1 328 204 0 25 chr11 9707432 9707655 -141075898 + AluJo SINE Alu 11 285 -17 1706 174 28 0 chr11 9707716 9708004 -141075549 - AluSx SINE Alu -14 298 3 2561 60 0 0 chr11 9709569 9709869 -141073684 + AluY SINE Alu 1 300 -11 2232 92 0 49 chr11 9709878 9710018 -141073535 + AluSp SINE Alu 1 146 -167 2378 82 3 22 chr11 9710018 9710334 -141073219 + AluY SINE Alu 1 310 -1 2232 92 0 49 chr11 9710334 9710520 -141073033 + AluSp SINE Alu 146 311 -2 25 31 0 0 chr11 9711135 9711167 -141072386 + AT_rich Low_complexity Low_complexity 1 32 0 2628 59 0 0 chr11 9711196 9711502 -141072051 + AluY SINE Alu 1 306 -5 748 85 85 0 chr11 9711661 9711779 -141071774 - L1MA7 LINE L1 -161 6130 6003 651 204 151 42 chr11 9713642 9713907 -141069646 - L1MC5 LINE L1 -50 7911 7618 974 211 43 100 chr11 9713926 9714386 -141069167 + L1MC4a LINE L1 6194 6627 -1181 195 129 0 0 chr11 9714790 9714821 -141068732 + (A)n Simple_repeat Simple_repeat 1 31 0 492 237 50 14 chr11 9715001 9715140 -141068413 + MER5B DNA MER1_type 35 178 0 2095 117 0 17 chr11 9715270 9715569 -141067984 - AluSx SINE Alu -13 299 6 2064 130 13 7 chr11 9715716 9716017 -141067536 - AluSx SINE Alu -9 303 1 1825 109 4 4 chr11 9716090 9716337 -141067216 + AluSx SINE Alu 45 291 -21 2341 95 0 3 chr11 9716344 9716639 -141066914 + AluSc SINE Alu 1 294 -15 2458 90 0 3 chr11 9716641 9716951 -141066602 + AluSc SINE Alu 1 309 0 21 57 0 0 chr11 9717000 9717035 -141066518 + AT_rich Low_complexity Low_complexity 1 35 0 4147 139 40 83 chr11 9717110 9717356 -141066197 + L1MB7 LINE L1 5148 5403 -781 2130 133 3 3 chr11 9717356 9717664 -141065889 + AluSg SINE Alu 1 308 -2 2176 104 0 36 chr11 9717664 9717973 -141065580 + AluSx SINE Alu 1 298 -14 4147 139 40 83 chr11 9717973 9718485 -141065068 + L1MB7 LINE L1 5402 5934 -250 2117 71 0 4 chr11 9718485 9718738 -141064815 + AluY SINE Alu 1 252 -59 4147 139 40 83 chr11 9718738 9718992 -141064561 + L1MB7 LINE L1 5934 6115 -69 2362 82 7 0 chr11 9718992 9719285 -141064268 - AluY SINE Alu -16 295 1 4147 139 40 83 chr11 9719285 9719343 -141064210 + L1MB7 LINE L1 6115 6174 -10 231 36 0 0 chr11 9719347 9719375 -141064178 + (A)n Simple_repeat Simple_repeat 1 28 0 2481 84 3 0 chr11 9719378 9719689 -141063864 + AluSp SINE Alu 1 312 -1 233 156 89 0 chr11 9720135 9720180 -141063373 + L2 LINE L2 3224 3272 0 1651 98 0 5 chr11 9720959 9721174 -141062379 + AluSg/x SINE Alu 83 296 -16 1794 171 0 13 chr11 9721364 9721663 -141061890 + AluJb SINE Alu 1 295 -17 1031 146 6 0 chr11 9721888 9722052 -141061501 - FAM SINE Alu -10 165 1 277 102 20 20 chr11 9722246 9722295 -141061258 + MIR3 SINE MIR 150 198 -10 245 264 19 0 chr11 9723176 9723229 -141060324 + MIR SINE MIR 48 101 -107 2662 50 0 0 chr11 9723481 9723783 -141059770 + AluY SINE Alu 1 302 -9 2139 120 3 3 chr11 9724081 9724380 -141059173 + AluSx SINE Alu 1 299 -13 2253 116 6 3 chr11 9724714 9725025 -141058528 + AluSx SINE Alu 1 312 0 431 274 65 6 chr11 9725636 9725804 -141057749 + MIR SINE MIR 16 193 -69 637 245 45 35 chr11 9725811 9726011 -141057542 - MIR SINE MIR -1 261 60 2248 79 14 0 chr11 9726151 9726450 -141057103 - AluSq SINE Alu 0 303 1 328 290 60 0 chr11 9726578 9726678 -141056875 - L2 LINE L2 -14 3258 3153 1508 164 11 35 chr11 9727001 9727288 -141056265 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr11 9727288 9727309 -141056244 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2364 84 0 7 chr11 9728242 9728540 -141055013 + AluSc SINE Alu 1 296 -13 395 195 34 34 chr11 9728941 9729059 -141054494 + L1MB8 LINE L1 6031 6148 -30 1954 116 29 14 chr11 9729066 9729199 -141054354 + AluSq SINE Alu 2 132 -176 2093 133 0 7 chr11 9729199 9729507 -141054046 + AluSx SINE Alu 1 306 -6 1954 116 29 14 chr11 9729507 9729676 -141053877 + AluSq SINE Alu 132 308 0 1538 185 11 11 chr11 9729683 9729964 -141053589 + AluJb SINE Alu 1 281 -31 2296 75 3 10 chr11 9729964 9730258 -141053295 - AluY SINE Alu -18 293 1 673 207 7 22 chr11 9730374 9730509 -141053044 - FLAM_A SINE Alu 0 133 1 1789 178 3 3 chr11 9730581 9730868 -141052685 + AluJb SINE Alu 1 287 -25 1821 136 39 32 chr11 9731029 9731337 -141052216 + AluJo SINE Alu 3 312 0 343 207 82 52 chr11 9731350 9731408 -141052145 - L1ME4a LINE L1 -92 6029 5974 1717 160 23 39 chr11 9731408 9731715 -141051838 - AluJo SINE Alu -10 302 1 343 207 82 52 chr11 9731715 9731791 -141051762 - L1ME4a LINE L1 -147 5974 5891 24 0 0 0 chr11 9732829 9732853 -141050700 + AT_rich Low_complexity Low_complexity 1 24 0 895 211 0 0 chr11 9733356 9733512 -141050041 - AluSg/x SINE Alu -22 290 135 2278 86 10 3 chr11 9733957 9734258 -141049295 + AluY SINE Alu 1 303 -8 190 296 0 0 chr11 9734262 9734306 -141049247 + MIR SINE MIR 57 100 -108 2455 87 0 0 chr11 9734347 9734646 -141048907 + AluSq SINE Alu 1 299 -14 2341 105 0 0 chr11 9734647 9734951 -141048602 + AluY SINE Alu 1 304 -7 35 0 0 0 chr11 9735145 9735180 -141048373 + AT_rich Low_complexity Low_complexity 1 35 0 469 264 110 40 chr11 9735280 9735507 -141048046 - MIR SINE MIR -5 257 15 2051 126 38 0 chr11 9735873 9736166 -141047387 + AluSx SINE Alu 1 304 -8 2642 49 0 0 chr11 9736417 9736721 -141046832 + AluY SINE Alu 1 304 -7 959 173 0 63 chr11 9736724 9736915 -141046638 + AluSg/x SINE Alu 134 312 0 1806 142 0 65 chr11 9737006 9737331 -141046222 + AluSx SINE Alu 1 304 -8 2251 117 0 0 chr11 9737473 9737773 -141045780 + AluSc SINE Alu 1 300 -9 483 215 188 14 chr11 9737778 9737922 -141045631 + AluSg/x SINE Alu 135 303 -7 2150 124 7 3 chr11 9737926 9738232 -141045321 + AluSg SINE Alu 1 307 -3 1984 153 0 0 chr11 9738232 9738513 -141045040 + AluSx SINE Alu 6 286 -26 27 0 0 0 chr11 9738516 9738543 -141045010 + AT_rich Low_complexity Low_complexity 1 27 0 1386 100 116 4 chr11 9738546 9738796 -141044757 - MER33 DNA MER1_type -46 278 1 2420 68 0 0 chr11 9738949 9739242 -141044311 + AluY SINE Alu 1 293 -18 2479 71 0 0 chr11 9739249 9739545 -141044008 + AluY SINE Alu 1 296 -15 2295 112 7 0 chr11 9739617 9739913 -141043640 - AluSx SINE Alu -14 298 1 1646 179 15 4 chr11 9740137 9740410 -141043143 - AluJo SINE Alu -33 279 4 2424 93 7 3 chr11 9740606 9740916 -141042637 - AluSq SINE Alu -2 311 1 815 122 0 95 chr11 9742215 9742362 -141041191 + FLAM_C SINE Alu 1 133 0 450 119 0 30 chr11 9742746 9742813 -141040740 - AluJ/FLAM SINE Alu -242 70 6 451 304 47 0 chr11 9743214 9743362 -141040191 - MIR SINE MIR -14 248 94 2159 102 0 13 chr11 9743394 9743707 -141039846 + AluSg SINE Alu 1 309 -1 2219 97 3 7 chr11 9743973 9744263 -141039290 + AluSc SINE Alu 9 297 -12 686 35 0 76 chr11 9744263 9744408 -141039145 + (GGAA)n Simple_repeat Simple_repeat 1 134 0 34 42 0 0 chr11 9744435 9744483 -141039070 + AT_rich Low_complexity Low_complexity 1 48 0 2173 69 0 11 chr11 9744497 9744773 -141038780 + AluY SINE Alu 38 310 -1 2221 93 14 0 chr11 9744848 9745137 -141038416 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr11 9745137 9745164 -141038389 + AT_rich Low_complexity Low_complexity 1 27 0 804 229 65 22 chr11 9745176 9745407 -141038146 - MIR SINE MIR 0 262 22 441 0 0 0 chr11 9745564 9745613 -141037940 + (CA)n Simple_repeat Simple_repeat 2 50 0 1969 122 14 37 chr11 9745621 9745917 -141037636 - AluSx SINE Alu -21 291 3 1347 211 26 68 chr11 9745947 9746255 -141037298 + AluJo SINE Alu 1 295 -7 1667 149 54 17 chr11 9746355 9746651 -141036902 + AluJo SINE Alu 1 307 -5 281 231 0 0 chr11 9746713 9746778 -141036775 - L3 LINE CR1 -175 1402 1338 2384 83 3 3 chr11 9748120 9748420 -141035133 - AluSp SINE Alu -13 300 1 25 31 0 0 chr11 9748590 9748622 -141034931 + AT_rich Low_complexity Low_complexity 1 32 0 2264 101 0 3 chr11 9748977 9749274 -141034279 + AluSg SINE Alu 1 296 -14 2024 158 3 0 chr11 9749300 9749611 -141033942 + AluJb SINE Alu 1 312 0 2238 100 3 17 chr11 9749676 9749976 -141033577 + AluSq SINE Alu 1 296 -17 1365 270 99 17 chr11 9750549 9751310 -141032243 + L2 LINE L2 2488 3313 0 1111 138 0 13 chr11 9751673 9751832 -141031721 + AluSx SINE Alu 1 157 -155 2202 105 0 32 chr11 9751989 9752303 -141031250 + AluSq SINE Alu 1 304 -9 2186 117 7 0 chr11 9752375 9752665 -141030888 - AluSx SINE Alu -18 294 3 724 171 85 0 chr11 9752688 9752817 -141030736 - FRAM SINE Alu -36 140 1 2090 122 10 7 chr11 9753652 9753948 -141029605 - AluSg SINE Alu -8 302 6 1959 139 10 7 chr11 9753987 9754281 -141029272 + AluSq SINE Alu 5 299 -14 2304 80 6 6 chr11 9754326 9754637 -141028916 + AluY SINE Alu 1 311 0 1484 171 6 70 chr11 9754778 9754924 -141028629 + AluJb SINE Alu 1 155 -168 2455 91 0 0 chr11 9754924 9755233 -141028320 + AluSq SINE Alu 2 310 -3 2130 111 35 0 chr11 9755236 9755524 -141028029 + AluSq SINE Alu 1 298 -15 1484 171 6 70 chr11 9755524 9755716 -141027837 + AluJb SINE Alu 157 323 0 22 35 0 0 chr11 9755741 9755770 -141027783 + AT_rich Low_complexity Low_complexity 1 29 0 1574 77 115 51 chr11 9755773 9756031 -141027522 + AluY SINE Alu 37 309 0 2396 92 3 0 chr11 9756037 9756342 -141027211 + AluSg SINE Alu 1 306 -4 2193 82 0 11 chr11 9756588 9756867 -141026686 - AluSg SINE Alu -20 290 15 225 0 0 0 chr11 9756897 9756922 -141026631 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2207 104 0 0 chr11 9756922 9757202 -141026351 - AluSx SINE Alu -32 280 1 1075 130 12 12 chr11 9757217 9757379 -141026174 + AluJb SINE Alu 129 290 -22 378 74 0 0 chr11 9757397 9757451 -141026102 + (CA)n Simple_repeat Simple_repeat 2 55 0 271 183 103 63 chr11 9757452 9757578 -141025975 + L1MC4a LINE L1 5781 5911 -1897 21 0 0 0 chr11 9757691 9757712 -141025841 + AT_rich Low_complexity Low_complexity 1 21 0 3369 196 86 10 chr11 9757822 9758633 -141024920 + L1MB5 LINE L1 5227 6106 -68 2407 76 0 3 chr11 9758640 9758931 -141024622 - AluSq SINE Alu -21 292 3 892 179 48 43 chr11 9758954 9759161 -141024392 - AluJo SINE Alu -17 295 88 358 104 30 30 chr11 9759163 9759230 -141024323 + L1MB8 LINE L1 6112 6178 0 2340 92 0 3 chr11 9761982 9762288 -141021265 - AluSg SINE Alu -5 305 1 1247 60 0 0 chr11 9762399 9762550 -141021003 + AluY SINE Alu 159 309 -2 306 71 24 48 chr11 9763337 9763421 -141020132 + (TA)n Simple_repeat Simple_repeat 1 82 0 2109 86 46 0 chr11 9763465 9763745 -141019808 + AluSg SINE Alu 1 293 -17 2085 143 3 13 chr11 9763745 9763881 -141019672 + AluSq SINE Alu 2 138 -165 2095 99 0 65 chr11 9763881 9764015 -141019538 + AluY SINE Alu 1 142 -169 2339 107 0 0 chr11 9764015 9764324 -141019229 + AluSx SINE Alu 1 309 -3 2095 99 0 65 chr11 9764324 9764511 -141019042 + AluY SINE Alu 142 301 -10 2085 143 3 13 chr11 9764511 9764675 -141018878 + AluSq SINE Alu 138 298 -5 2255 64 10 14 chr11 9764682 9765024 -141018529 + AluY SINE Alu 2 296 -15 3771 184 75 33 chr11 9765030 9765651 -141017902 - L1MB7 LINE L1 -5 6179 5586 2341 50 11 0 chr11 9765651 9765928 -141017625 - AluY SINE Alu -12 299 20 3771 184 75 33 chr11 9765928 9765968 -141017585 - L1MB7 LINE L1 -598 5586 5549 1698 153 32 7 chr11 9765968 9766249 -141017304 - AluSx SINE Alu -24 288 1 3771 184 75 33 chr11 9766249 9766538 -141017015 - L1MB7 LINE L1 -635 5549 5274 2126 132 0 16 chr11 9766538 9766670 -141016883 + AluSx SINE Alu 5 138 -174 2156 121 3 0 chr11 9766670 9766968 -141016585 + AluSx SINE Alu 1 299 -13 2126 132 0 16 chr11 9766968 9767137 -141016416 + AluSx SINE Alu 138 301 -11 2109 99 0 33 chr11 9767137 9767272 -141016281 + AluSc SINE Alu 1 139 -170 3771 184 75 33 chr11 9767138 9767272 -141016281 - L1MB7 LINE L1 -910 5274 5147 2427 89 3 0 chr11 9767272 9767576 -141015977 + AluSp SINE Alu 1 305 -8 3771 184 75 33 chr11 9767576 9767864 -141015689 - L1MB7 LINE L1 -1037 5147 5039 2109 99 0 33 chr11 9767576 9767742 -141015811 + AluSc SINE Alu 139 292 -17 1689 165 21 10 chr11 9767864 9768155 -141015398 - AluJb SINE Alu -18 294 1 3771 184 75 33 chr11 9768155 9768418 -141015135 - L1MB7 LINE L1 -1145 5039 4789 2034 120 0 24 chr11 9768419 9768641 -141014912 - AluSx SINE Alu 0 311 97 4750 170 71 48 chr11 9768641 9769688 -141013865 + MER11C LTR ERVK 1 1071 0 2034 120 0 24 chr11 9769688 9769783 -141013770 - AluSx SINE Alu -214 97 1 2028 214 133 24 chr11 9769834 9770111 -141013442 - L1MB7 LINE L1 -1446 4700 4455 2023 100 23 27 chr11 9770111 9770412 -141013141 - AluSc SINE Alu -9 300 1 2028 214 133 24 chr11 9770412 9770471 -141013082 - L1MB7 LINE L1 -1691 4455 4404 2096 105 17 7 chr11 9770471 9770766 -141012787 - AluSq SINE Alu -15 298 1 2028 214 133 24 chr11 9770766 9770819 -141012734 - L1MB7 LINE L1 -1742 4404 4358 1869 113 94 0 chr11 9770819 9771094 -141012459 - AluSx SINE Alu -11 301 1 2028 214 133 24 chr11 9771094 9771370 -141012183 - L1MB7 LINE L1 -1788 4358 3960 2221 117 0 0 chr11 9771419 9771719 -141011834 + AluSp SINE Alu 1 300 -13 2228 112 3 0 chr11 9771796 9772091 -141011462 - AluSx SINE Alu -16 296 1 840 156 8 0 chr11 9772099 9772221 -141011332 - FLAM_C SINE Alu -10 123 1 2165 120 3 0 chr11 9772277 9772577 -141010976 + AluSg SINE Alu 1 301 -9 248 355 40 0 chr11 9772688 9772812 -141010741 + MLT1J LTR MaLR 92 220 -291 21 0 0 0 chr11 9773421 9773442 -141010111 + AT_rich Low_complexity Low_complexity 1 21 0 1823 101 0 16 chr11 9776566 9776823 -141006730 - AluSx SINE Alu -11 301 49 298 191 15 29 chr11 9776823 9776891 -141006662 + AluSg SINE Alu 63 129 -171 304 233 11 40 chr11 9776942 9777118 -141006435 + C-rich Low_complexity Low_complexity 4 174 0 1462 106 5 10 chr11 9777361 9777559 -141005994 + AluSg/x SINE Alu 68 264 -46 37 0 0 0 chr11 9777571 9777608 -141005945 + AT_rich Low_complexity Low_complexity 1 37 0 2243 112 0 10 chr11 9777658 9777970 -141005583 - AluSx SINE Alu -3 309 1 1787 175 11 0 chr11 9778057 9778342 -141005211 - AluJb SINE Alu -24 288 1 2484 60 7 0 chr11 9778353 9778652 -141004901 - AluSp SINE Alu -12 301 1 1089 141 6 0 chr11 9778743 9778906 -141004647 - AluSp SINE Alu -14 299 136 1999 154 3 3 chr11 9778917 9779222 -141004331 - AluSx SINE Alu -7 305 1 2219 107 0 0 chr11 9779250 9779568 -141003985 + AluY SINE Alu 1 311 0 22 70 0 0 chr11 9779675 9779718 -141003835 + AT_rich Low_complexity Low_complexity 1 43 0 2302 87 10 13 chr11 9782091 9782400 -141001153 + AluSc SINE Alu 2 309 0 202 211 88 0 chr11 9782465 9782522 -141001031 - MIR SINE MIR -27 235 174 2253 113 0 10 chr11 9782547 9782858 -141000695 + AluSq SINE Alu 1 308 -5 649 188 0 0 chr11 9782860 9782961 -141000592 - FLAM_A SINE Alu -32 110 10 192 284 30 15 chr11 9783145 9783212 -141000341 - L2 LINE L2 -12 3301 3234 2226 105 0 7 chr11 9783324 9783618 -140999935 - AluSg SINE Alu -18 292 1 198 91 0 0 chr11 9783682 9783715 -140999838 + (CAT)n Simple_repeat Simple_repeat 3 35 0 2484 57 10 19 chr11 9784394 9784708 -140998845 + AluY SINE Alu 1 311 0 2086 125 3 6 chr11 9784761 9785074 -140998479 + AluSx SINE Alu 1 312 0 834 161 73 0 chr11 9785089 9785226 -140998327 + AluSg/x SINE Alu 130 276 -36 224 39 39 39 chr11 9785233 9785285 -140998268 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr11 9786277 9786301 -140997252 + AT_rich Low_complexity Low_complexity 1 24 0 1371 197 37 54 chr11 9787118 9787413 -140996140 - AluJo SINE Alu -12 290 1 2456 77 3 0 chr11 9787710 9788008 -140995545 + AluSp SINE Alu 1 299 -14 2388 76 13 3 chr11 9788646 9788948 -140994605 + AluSq SINE Alu 1 305 -8 2187 109 3 0 chr11 9789442 9789736 -140993817 + AluSx SINE Alu 6 300 -12 2326 97 0 3 chr11 9789938 9790246 -140993307 - AluSx SINE Alu -5 307 1 423 109 0 0 chr11 9790417 9790472 -140993081 + Alu SINE Alu 238 292 -17 621 172 62 0 chr11 9790510 9790638 -140992915 + L1MB3 LINE L1 6041 6176 -7 224 308 175 17 chr11 9791229 9791349 -140992204 + MIR SINE MIR 75 213 -49 202 296 217 9 chr11 9791514 9791629 -140991924 + MIR SINE MIR 12 150 -112 1123 152 173 12 chr11 9791724 9792011 -140991542 + MER1B DNA MER1_type 1 338 -1 28 0 0 0 chr11 9792406 9792434 -140991119 + AT_rich Low_complexity Low_complexity 1 28 0 1432 181 55 15 chr11 9792434 9792705 -140990848 - AluJo SINE Alu -30 282 1 833 115 0 0 chr11 9793798 9793911 -140989642 - AluSg/x SINE Alu -10 299 187 832 237 10 5 chr11 9794042 9794240 -140989313 + L1MD3 LINE L1 7719 7917 -78 2147 130 3 0 chr11 9794378 9794679 -140988874 + AluSx SINE Alu 1 302 -10 363 82 16 0 chr11 9794726 9794787 -140988766 + L1MB8 LINE L1 5268 5329 -817 1543 106 128 0 chr11 9794788 9795014 -140988539 + AluSq SINE Alu 1 255 -58 929 142 43 6 chr11 9795025 9795187 -140988366 + AluSg/x SINE Alu 138 305 -5 2300 192 143 14 chr11 9795204 9795862 -140987691 + L1MB8 LINE L1 5324 6135 -49 2139 99 13 35 chr11 9795865 9796041 -140987512 - AluSx SINE Alu -6 306 139 2417 76 0 13 chr11 9796041 9796343 -140987210 - AluY SINE Alu -12 299 2 2139 99 13 35 chr11 9796343 9796479 -140987074 - AluSx SINE Alu -173 139 1 811 165 0 15 chr11 9796481 9796614 -140986939 - FLAM_C SINE Alu -12 131 1 2097 116 7 3 chr11 9797183 9797477 -140986076 - AluSx SINE Alu -17 295 1 867 153 0 29 chr11 9799135 9799272 -140984281 - FLAM_C SINE Alu 0 133 1 545 211 57 171 chr11 9799424 9799640 -140983913 + Charlie1a DNA MER1_type 11 250 -2511 330 26 0 0 chr11 9799640 9799679 -140983874 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 545 211 57 171 chr11 9799679 9799695 -140983858 + Charlie1a DNA MER1_type 250 266 -2495 1899 98 4 0 chr11 9799695 9799940 -140983613 - AluSp SINE Alu -67 246 1 545 211 57 171 chr11 9799940 9799981 -140983572 + Charlie1a DNA MER1_type 266 252 -2509 2259 95 0 0 chr11 9799981 9800275 -140983278 - AluY SINE Alu -17 294 1 545 211 57 171 chr11 9800275 9800298 -140983255 + Charlie1a DNA MER1_type 251 275 -1180 2275 70 0 0 chr11 9800298 9800569 -140982984 - AluSg SINE Alu -18 292 22 510 232 18 0 chr11 9800572 9800677 -140982876 + Charlie1a DNA MER1_type 547 656 -2105 2047 101 4 11 chr11 9800677 9800953 -140982600 + AluSp SINE Alu 1 274 -39 598 217 145 6 chr11 9800960 9801126 -140982427 + Charlie1a DNA MER1_type 1264 1452 -3 1820 80 121 15 chr11 9801632 9801896 -140981657 - AluY SINE Alu -19 292 1 338 306 83 6 chr11 9802124 9802304 -140981249 + L1ME LINE L1 5625 5818 -303 216 0 0 0 chr11 9802350 9802374 -140981179 + (TA)n Simple_repeat Simple_repeat 2 25 0 2458 77 0 0 chr11 9802374 9802672 -140980881 - AluSc SINE Alu -11 298 1 1632 219 215 4 chr11 9802707 9803224 -140980329 + L1ME2 LINE L1 5502 6127 -37 2161 106 0 3 chr11 9803571 9803875 -140979678 + AluSg1 SINE Alu 1 303 0 2435 94 0 0 chr11 9803927 9804236 -140979317 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr11 9804249 9804272 -140979281 + AT_rich Low_complexity Low_complexity 1 23 0 473 174 43 0 chr11 9804295 9804387 -140979166 + L1MB7 LINE L1 6080 6175 -9 676 248 44 60 chr11 9805031 9805346 -140978207 - L1M4 LINE L1 -2040 4106 3797 613 153 194 69 chr11 9805751 9805895 -140977658 - FRAM SINE Alu -4 162 1 2583 64 0 0 chr11 9806072 9806383 -140977170 - AluY SINE Alu 0 311 1 2131 113 0 13 chr11 9806602 9806904 -140976649 - AluSp SINE Alu -15 298 1 2173 70 11 0 chr11 9807109 9807382 -140976171 + AluSg SINE Alu 31 306 -4 440 259 133 14 chr11 9807969 9808112 -140975441 - MIR SINE MIR -102 160 1 292 225 28 14 chr11 9808345 9808416 -140975137 - MIR SINE MIR -114 148 77 39 22 0 0 chr11 9808470 9808516 -140975037 + AT_rich Low_complexity Low_complexity 1 46 0 478 114 29 0 chr11 9808727 9808797 -140974756 + AluS SINE Alu 225 296 -15 2368 52 42 0 chr11 9808820 9809109 -140974444 + AluY SINE Alu 1 301 -10 1788 138 10 52 chr11 9809158 9809463 -140974090 - AluJb SINE Alu -20 292 1 1216 218 45 8 chr11 10011947 10012213 -140771340 - AluJo SINE Alu -36 276 1 2450 53 3 17 chr11 10012244 10012545 -140771008 - AluY SINE Alu -14 297 1 1381 183 122 0 chr11 10012547 10012809 -140770744 - AluJo SINE Alu -7 295 2 646 93 131 19 chr11 10012920 10013027 -140770526 + MER21A LTR ERV1 15 133 -798 2088 123 0 3 chr11 10013027 10013311 -140770242 + AluSx SINE Alu 1 283 -29 495 227 7 27 chr11 10013407 10013557 -140769996 + MER39 LTR ERV1 219 365 -342 189 0 0 0 chr11 10013979 10014000 -140769553 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 10014014 10014228 -140769325 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 10014228 10014520 -140769033 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 10014759 10015018 -140768535 - AluSq SINE Alu -53 260 1 1785 170 3 14 chr11 10015215 10015509 -140768044 + AluJo SINE Alu 9 299 -13 534 98 0 0 chr11 10015529 10015611 -140767942 + (GGGA)n Simple_repeat Simple_repeat 1 82 0 200 224 15 0 chr11 10016270 10016337 -140767216 + CT-rich Low_complexity Low_complexity 1 68 0 237 277 128 69 chr11 10016585 10016773 -140766780 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 10016792 10017098 -140766455 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 10017120 10017446 -140766107 + L2 LINE L2 1728 2088 -1226 3270 146 2 28 chr11 10017467 10018001 -140765552 + MER1A DNA MER1_type 1 520 -9 2348 93 30 0 chr11 10018128 10018430 -140765123 + AluSx SINE Alu 1 311 -1 671 254 98 23 chr11 10018822 10019086 -140764467 + L2 LINE L2 2915 3198 -115 493 49 0 0 chr11 10019185 10019246 -140764307 + AluY SINE Alu 2 62 -256 1315 109 0 6 chr11 10019246 10019420 -140764133 + AluSg/x SINE Alu 97 269 -43 626 170 0 0 chr11 10019423 10019517 -140764036 + AluSg/x SINE Alu 72 165 -145 314 327 19 19 chr11 10019911 10020018 -140763535 - MLT1B-int LTR MaLR -509 862 756 1704 147 25 39 chr11 10020039 10020325 -140763228 - AluJo SINE Alu -30 282 1 783 186 0 0 chr11 10020506 10020635 -140762918 - FLAM_C SINE Alu -4 129 1 673 183 8 0 chr11 10020970 10021096 -140762457 - FLAM_A SINE Alu -5 137 11 225 333 0 0 chr11 10021110 10021188 -140762365 - MLT1B-int LTR MaLR -961 410 333 457 111 0 0 chr11 10021190 10021253 -140762300 - MLT1B LTR MaLR 0 390 328 1779 165 0 20 chr11 10021555 10021852 -140761701 - AluJo SINE Alu -21 291 1 357 312 16 24 chr11 10022020 10022145 -140761408 - L2 LINE L2 -1 3271 3148 2091 133 0 13 chr11 10022857 10023194 -140760359 - AluSx SINE Alu 0 312 1 612 144 17 0 chr11 10023803 10023976 -140759577 + (TA)n Simple_repeat Simple_repeat 1 176 0 383 154 51 29 chr11 10023977 10024152 -140759401 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 31 0 0 0 chr11 10024152 10024183 -140759370 + AT_rich Low_complexity Low_complexity 1 31 0 198 103 23 58 chr11 10024183 10024270 -140759283 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 373 192 92 67 chr11 10024273 10024393 -140759160 + L1MCa LINE L1 1952 2074 -4352 1604 174 30 33 chr11 10024518 10024817 -140758736 - AluJo SINE Alu -14 298 1 3229 157 33 117 chr11 10025084 10025848 -140757705 - MER21A LTR ERV1 -19 912 213 2436 84 3 0 chr11 10026800 10027110 -140756443 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 10027111 10027412 -140756141 - AluSg1 SINE Alu -8 301 1 1997 150 0 0 chr11 10028286 10028572 -140754981 - AluJo SINE Alu -26 286 1 1664 164 27 14 chr11 10028757 10029050 -140754503 - AluJb SINE Alu -5 307 11 299 328 51 69 chr11 10029227 10029559 -140753994 - L2 LINE L2 -22 3250 2925 318 50 0 0 chr11 10030609 10030649 -140752904 + (CA)n Simple_repeat Simple_repeat 1 40 0 1958 132 16 13 chr11 10030784 10031087 -140752466 - AluSq SINE Alu -1 312 9 442 257 9 0 chr11 10031282 10031387 -140752166 - L2 LINE L2 -507 2807 2702 1017 147 0 85 chr11 10031424 10031601 -140751952 - AluJo SINE Alu -148 164 3 1355 144 5 0 chr11 10031621 10031822 -140751731 + AluSg/x SINE Alu 87 288 -24 342 98 0 0 chr11 10031823 10031874 -140751679 + (TG)n Simple_repeat Simple_repeat 1 51 0 445 295 58 31 chr11 10032017 10032342 -140751211 - L1MEd LINE L1 -4908 1211 878 488 290 141 19 chr11 10033178 10033440 -140750113 + L2 LINE L2 1832 2125 -1189 716 169 0 0 chr11 10033448 10033566 -140749987 + FLAM_C SINE Alu 7 124 -19 24 0 0 0 chr11 10033568 10033592 -140749961 + AT_rich Low_complexity Low_complexity 1 24 0 829 254 33 12 chr11 10033620 10033860 -140749693 + L2 LINE L2 2159 2403 -911 607 120 11 0 chr11 10034197 10034289 -140749264 - AluS SINE Alu -216 97 5 862 154 0 0 chr11 10034346 10034469 -140749084 + FLAM_C SINE Alu 3 125 -18 2293 219 70 10 chr11 10034524 10035035 -140748518 - MLT1F LTR MaLR 0 542 1 182 162 27 0 chr11 10035091 10035128 -140748425 + MIR SINE MIR 117 154 -108 216 111 0 0 chr11 10035143 10035179 -140748374 + (T)n Simple_repeat Simple_repeat 1 36 0 2209 105 7 3 chr11 10035744 10036040 -140747513 - AluSg SINE Alu -13 297 1 22 0 0 0 chr11 10036042 10036064 -140747489 + AT_rich Low_complexity Low_complexity 1 22 0 1127 288 65 47 chr11 10036177 10036900 -140746653 + MLT2F LTR ERVL 10 626 -2 1617 49 0 0 chr11 10036946 10037129 -140746424 + AluY SINE Alu 1 183 -128 2409 100 3 0 chr11 10037300 10037610 -140745943 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr11 10037862 10037885 -140745668 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2308 81 0 3 chr11 10040536 10040819 -140742734 + AluSx SINE Alu 1 282 -30 1343 184 39 12 chr11 10041047 10041303 -140742250 + AluJo SINE Alu 1 263 -49 1570 108 0 5 chr11 10041404 10041616 -140741937 + AluSg/x SINE Alu 86 296 -14 21 36 0 0 chr11 10043350 10043378 -140740175 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 10043449 10043608 -140739945 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 10043608 10043686 -140739867 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 10043815 10043848 -140739705 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 10044381 10044682 -140738871 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 10045703 10045938 -140737615 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 10046453 10046546 -140737007 + MER5B DNA MER1_type 24 116 -62 1778 129 65 14 chr11 10046563 10046841 -140736712 - AluSx SINE Alu -12 300 9 2275 108 3 3 chr11 10046986 10047291 -140736262 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 10047432 10047577 -140735976 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 10047610 10047707 -140735846 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 10047803 10047974 -140735579 + AluSg/x SINE Alu 115 288 -24 577 151 0 0 chr11 10048681 10048767 -140734786 - AluJ/FLAM SINE Alu -225 87 2 3956 171 4 19 chr11 10048867 10048897 -140734656 + L1M4 LINE L1 3239 3268 -2878 1702 167 14 3 chr11 10048897 10049191 -140734362 + AluJb SINE Alu 3 299 -13 3956 171 4 19 chr11 10049191 10049895 -140733658 + L1M4 LINE L1 3268 3962 -2184 300 247 74 39 chr11 10050302 10050533 -140733020 + L1MEc LINE L1 1428 1666 -4730 22 70 0 0 chr11 10050721 10050764 -140732789 + AT_rich Low_complexity Low_complexity 1 43 0 427 305 60 54 chr11 10050813 10051643 -140731910 + L1M4 LINE L1 4335 5169 -977 873 136 0 0 chr11 10051664 10051782 -140731771 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr11 10051782 10051812 -140731741 + AT_rich Low_complexity Low_complexity 1 30 0 2156 125 3 0 chr11 10051943 10052247 -140731306 + AluSx SINE Alu 3 307 -5 2368 115 0 0 chr11 10052350 10052654 -140730899 + AluSx SINE Alu 1 304 -8 2168 123 0 3 chr11 10053065 10053358 -140730195 - AluSg SINE Alu -18 292 1 1285 127 0 11 chr11 10053369 10053558 -140729995 - AluSx SINE Alu -14 298 112 650 234 135 35 chr11 10053923 10054005 -140729548 - L2 LINE L2 -266 3047 2975 1697 193 0 16 chr11 10054005 10054316 -140729237 - AluJb SINE Alu -6 306 1 650 234 135 35 chr11 10054316 10054634 -140728919 - L2 LINE L2 -338 2975 2596 2210 110 3 0 chr11 10054693 10054993 -140728560 - AluSp SINE Alu -12 301 1 1036 76 15 0 chr11 10054993 10055124 -140728429 - AluSx SINE Alu -175 137 5 595 242 124 60 chr11 10055137 10055451 -140728102 - L2 LINE L2 -797 2517 2184 * 1995 235 113 32 chr11 10055449 10055957 -140727596 + L2 LINE L2 2247 2826 -487 2375 94 7 3 chr11 10055957 10056265 -140727288 + AluSc SINE Alu 1 309 0 1995 235 113 32 chr11 10056265 10056473 -140727080 + L2 LINE L2 2826 3016 -297 195 139 0 0 chr11 10056613 10056649 -140726904 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2178 107 31 0 chr11 10056740 10057030 -140726523 + AluSx SINE Alu 1 299 -13 1755 180 27 3 chr11 10057889 10058189 -140725364 - AluJb SINE Alu -5 307 1 336 203 16 0 chr11 10058303 10058367 -140725186 + MER58 DNA MER1_type 2356 2420 0 510 280 56 36 chr11 10058670 10059021 -140724532 + L2 LINE L2 2889 3306 -7 977 311 107 28 chr11 10059212 10059884 -140723669 - L2 LINE L2 -1480 1834 1080 893 200 16 5 chr11 10059884 10060069 -140723484 + MER5A DNA MER1_type 1 187 -2 977 311 107 28 chr11 10060069 10060243 -140723310 - L2 LINE L2 -2234 1080 921 1715 221 21 18 chr11 10060250 10060630 -140722923 - MLT1E2 LTR MaLR 0 626 246 889 141 0 28 chr11 10060632 10060774 -140722779 - FLAM_C SINE Alu -5 138 1 1031 227 8 25 chr11 10060823 10061065 -140722488 - MLT1E2 LTR MaLR -388 238 1 387 293 64 16 chr11 10061136 10061324 -140722229 - L2 LINE L2 -2498 816 620 199 310 0 0 chr11 10061348 10061419 -140722134 + MER5A DNA MER1_type 36 106 -83 24 53 0 0 chr11 10061624 10061662 -140721891 + AT_rich Low_complexity Low_complexity 1 38 0 845 156 0 0 chr11 10061662 10061784 -140721769 - FLAM_C SINE Alu -16 127 6 4349 121 15 126 chr11 10061862 10063415 -140720138 + pTR5 LTR ERV1 741 2606 0 836 222 233 15 chr11 10063415 10063818 -140719735 + Charlie2b DNA MER1_type 176 666 -2116 811 208 49 70 chr11 10063908 10064075 -140719478 + Charlie2a DNA MER1_type 1528 1688 -1174 830 176 0 0 chr11 10064075 10064206 -140719347 + FLAM_C SINE Alu 3 133 0 811 208 49 70 chr11 10064206 10064322 -140719231 + Charlie2a DNA MER1_type 1688 1805 -1057 455 69 0 0 chr11 10064322 10064380 -140719173 - Alu SINE Alu -14 295 238 493 232 24 65 chr11 10064484 10064598 -140718955 + L2 LINE L2 2233 2339 -975 1507 177 10 20 chr11 10064598 10064892 -140718661 + AluJb SINE Alu 1 291 -21 493 232 24 65 chr11 10064892 10064945 -140718608 + L2 LINE L2 2339 2393 -921 2058 137 0 0 chr11 10064984 10065291 -140718262 - AluSx SINE Alu -5 307 1 1516 232 60 64 chr11 10065293 10065627 -140717926 + L2 LINE L2 2784 3116 -197 1436 179 32 21 chr11 10065627 10065912 -140717641 - AluJo SINE Alu -24 288 1 1516 232 60 64 chr11 10065912 10066108 -140717445 + L2 LINE L2 3116 3311 -2 488 172 0 50 chr11 10066543 10066642 -140716911 + FLAM SINE Alu 38 131 -12 22 0 0 0 chr11 10066642 10066664 -140716889 + AT_rich Low_complexity Low_complexity 1 22 0 2187 95 3 0 chr11 10066671 10066975 -140716578 + AluSp SINE Alu 1 305 -8 261 269 192 10 chr11 10067173 10067277 -140716276 - MLT1K LTR MaLR -355 233 111 240 266 203 28 chr11 10067733 10067876 -140715677 + L2 LINE L2 331 498 -2816 503 305 40 34 chr11 10067903 10068228 -140715325 + L2 LINE L2 603 929 -2385 509 386 92 16 chr11 10068846 10069356 -140714197 + L2 LINE L2 1831 2379 -935 2184 89 23 3 chr11 10069380 10069683 -140713870 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr11 10069809 10069837 -140713716 + AT_rich Low_complexity Low_complexity 1 28 0 2157 95 0 0 chr11 10070058 10070369 -140713184 + AluSx SINE Alu 1 311 0 1200 113 0 11 chr11 10070373 10070559 -140712994 + AluSg/x SINE Alu 127 310 0 2131 74 14 7 chr11 10071441 10071726 -140711827 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 10071729 10071758 -140711795 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 317 173 0 0 chr11 10071896 10071948 -140711605 - Tigger2a DNA MER2_type -67 377 326 729 138 9 0 chr11 10071952 10072068 -140711485 + L1 LINE L1 4699 4815 -1331 1669 112 84 21 chr11 10072078 10072364 -140711189 - Tigger2a DNA MER2_type -130 304 1 4514 179 32 34 chr11 10072606 10074134 -140709419 - L1MB2 LINE L1 -1 6170 4640 1866 117 29 0 chr11 10074134 10074407 -140709146 - AluSq SINE Alu -31 282 2 4514 179 32 34 chr11 10074407 10074561 -140708992 - L1MB2 LINE L1 -1531 4640 4501 2337 93 3 0 chr11 10074561 10074872 -140708681 - AluSp SINE Alu -1 312 1 4514 179 32 34 chr11 10074872 10074976 -140708577 - L1MB2 LINE L1 -1670 4501 4398 593 194 0 9 chr11 10074995 10075103 -140708450 - FLAM_C SINE Alu -12 131 25 2146 162 25 10 chr11 10075114 10075521 -140708032 - L1MB2 LINE L1 -1735 4411 3999 2309 82 3 0 chr11 10075648 10075951 -140707602 - AluSg SINE Alu -6 304 1 190 250 0 0 chr11 10076469 10076509 -140707044 - MIR SINE MIR -64 198 159 370 282 117 28 chr11 10076913 10077126 -140706427 + L2 LINE L2 2829 3060 -212 342 0 0 0 chr11 10077503 10077541 -140706012 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 940 236 64 130 chr11 10077677 10077735 -140705818 - MLT1G LTR MaLR -7 583 523 2175 101 0 0 chr11 10077735 10078033 -140705520 - AluSg1 SINE Alu -11 298 1 940 236 64 130 chr11 10078033 10078537 -140705016 - MLT1G LTR MaLR -67 523 58 626 207 52 0 chr11 10078730 10078846 -140704707 - MER68 LTR ERV1 0 562 441 1735 150 11 0 chr11 10078846 10079120 -140704433 + AluSx SINE Alu 1 277 -35 363 23 0 0 chr11 10079151 10079195 -140704358 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1033 171 0 0 chr11 10079216 10079386 -140704167 - AluJo/FRAM SINE Alu -8 304 135 1504 193 24 0 chr11 10079387 10079683 -140703870 - AluJb SINE Alu -9 303 1 358 85 34 34 chr11 10079684 10079743 -140703810 - MER68 LTR ERV1 -503 59 1 2194 106 3 3 chr11 10079817 10080128 -140703425 + AluSx SINE Alu 1 311 -1 946 132 7 13 chr11 10080142 10080294 -140703259 + AluSq/x SINE Alu 1 151 -161 956 158 0 0 chr11 10080395 10080547 -140703006 + AluJb SINE Alu 157 308 -4 2097 86 7 13 chr11 10080898 10081199 -140702354 - AluSg SINE Alu -11 299 1 757 132 0 47 chr11 10081237 10081366 -140702187 - FRAM SINE Alu -22 154 32 203 313 31 21 chr11 10081392 10081488 -140702065 + L2 LINE L2 2988 3084 -188 993 285 115 26 chr11 10081672 10082177 -140701376 - MLT1K LTR MaLR -12 576 27 1610 131 7 53 chr11 10082280 10082562 -140700991 + AluJo SINE Alu 31 299 -13 2242 113 0 0 chr11 10083363 10083674 -140699879 - AluSx SINE Alu -1 311 1 1914 140 7 0 chr11 10084544 10084837 -140698716 - AluSx SINE Alu -13 299 5 464 289 134 30 chr11 10084837 10085038 -140698515 + MIR SINE MIR 30 251 -11 306 378 30 22 chr11 10085117 10085252 -140698301 - L3b LINE CR1 -108 1475 1340 2219 90 0 29 chr11 10085287 10085598 -140697955 + AluSx SINE Alu 1 302 -10 195 232 12 98 chr11 10085702 10085784 -140697769 - L2 LINE L2 -11 3261 3187 889 260 64 35 chr11 10086218 10086530 -140697023 + MER102b DNA MER1_type 21 341 0 2130 103 0 0 chr11 10086782 10087072 -140696481 - AluSx SINE Alu -22 290 1 2011 128 27 0 chr11 10087236 10087533 -140696020 - AluSx SINE Alu -7 305 1 256 200 0 18 chr11 10087592 10087647 -140695906 - MLT1L LTR MaLR -16 599 546 1072 169 0 76 chr11 10087647 10087883 -140695670 - AluJb SINE Alu -9 303 86 302 146 0 0 chr11 10087883 10087931 -140695622 - MLT1L LTR MaLR -65 550 503 608 213 47 0 chr11 10088112 10088239 -140695314 - MLT1L LTR MaLR -341 274 142 1388 154 33 18 chr11 10088699 10088972 -140694581 - L1MB8 LINE L1 -2 6176 5900 1473 87 0 0 chr11 10089084 10089280 -140694273 + AluSg/x SINE Alu 117 312 0 225 178 0 0 chr11 10089453 10089498 -140694055 + T-rich Low_complexity Low_complexity 1 45 0 342 283 10 10 chr11 10090024 10090123 -140693430 - MIR3 SINE MIR -10 198 100 2460 50 3 0 chr11 10090173 10090471 -140693082 - AluSp SINE Alu -14 299 1 181 143 232 18 chr11 10092463 10092519 -140691034 - MIR3 SINE MIR -5 203 136 1417 238 88 7 chr11 10092532 10092939 -140690614 - L1ME1 LINE L1 -19 6147 5708 1529 213 47 14 chr11 10092939 10093206 -140690347 - L1MDa LINE L1 -3847 2693 2436 1959 145 0 0 chr11 10093206 10093509 -140690044 - AluSx SINE Alu -9 303 1 1529 213 47 14 chr11 10093509 10093831 -140689722 - L1MDa LINE L1 -4104 2436 2082 2080 121 0 0 chr11 10093848 10094146 -140689407 - AluSg SINE Alu -12 298 1 736 172 0 8 chr11 10094158 10094280 -140689273 - AluSq/x SINE Alu -184 129 9 193 292 97 0 chr11 10094292 10094364 -140689189 - MIR SINE MIR -103 105 27 216 0 0 0 chr11 10094373 10094397 -140689156 + (GA)n Simple_repeat Simple_repeat 1 24 0 1381 188 7 7 chr11 10094397 10094673 -140688880 - AluJb SINE Alu -34 278 3 1626 181 14 0 chr11 10094687 10094980 -140688573 - AluJb SINE Alu -11 301 5 2180 112 0 0 chr11 10095016 10095312 -140688241 - AluSx SINE Alu -16 296 1 204 207 35 52 chr11 10095695 10095753 -140687800 - L2 LINE L2 0 3272 3216 1761 130 67 0 chr11 10096383 10096653 -140686900 - AluSx SINE Alu -24 288 1 1043 140 0 0 chr11 10096970 10097120 -140686433 + AluSq/x SINE Alu 2 151 -161 404 170 53 23 chr11 10097221 10097318 -140686235 - AluSc SINE Alu -91 208 119 982 238 114 65 chr11 10097353 10097450 -140686103 - L1MC4a LINE L1 -1944 5864 5773 2028 105 23 10 chr11 10097450 10097755 -140685798 + AluSg SINE Alu 1 309 -1 982 238 114 65 chr11 10097755 10097946 -140685607 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 10097946 10097980 -140685573 + (CA)n Simple_repeat Simple_repeat 2 35 0 982 238 114 65 chr11 10097980 10098136 -140685417 - L1MC4a LINE L1 -2215 5593 5397 1877 86 4 0 chr11 10099044 10099336 -140684217 + AluSg SINE Alu 37 329 0 559 192 0 0 chr11 10100086 10100185 -140683368 - U13 snRNA snRNA -2 102 4 227 261 11 57 chr11 10101912 10102000 -140681553 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 10103643 10103700 -140679853 + GC_rich Low_complexity Low_complexity 1 57 0 24 67 0 0 chr11 10103777 10103822 -140679731 + GC_rich Low_complexity Low_complexity 1 45 0 35 78 0 0 chr11 10104020 10104097 -140679456 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 10104152 10104183 -140679370 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 10104228 10104259 -140679294 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 10104753 10104786 -140678767 + GC_rich Low_complexity Low_complexity 1 33 0 2138 98 3 22 chr11 10105509 10105825 -140677728 - AluSx SINE Alu -2 310 1 311 282 264 17 chr11 10105827 10105880 -140677673 - L1ME LINE L1 -386 5735 5696 1817 92 32 51 chr11 10105880 10106194 -140677359 - AluSx SINE Alu -4 308 1 311 282 264 17 chr11 10106194 10106314 -140677239 - L1ME LINE L1 -425 5696 5519 1576 179 41 0 chr11 10106859 10107150 -140676403 - AluSx SINE Alu -4 308 6 24 53 0 0 chr11 10107164 10107202 -140676351 + AT_rich Low_complexity Low_complexity 1 38 0 184 303 106 0 chr11 10107258 10107324 -140676229 - L3 LINE CR1 -1261 316 244 * 396 277 91 22 chr11 10107290 10107473 -140676080 - MIR SINE MIR -60 202 3 485 277 92 8 chr11 10109306 10109454 -140674099 - MIR3 SINE MIR -36 172 30 233 278 144 0 chr11 10110365 10110455 -140673098 + L1ME4a LINE L1 5353 5455 -2353 445 184 10 78 chr11 10110534 10110637 -140672916 - MER20 DNA MER1_type -5 214 119 322 276 71 63 chr11 10110640 10110806 -140672747 + L1ME4a LINE L1 5724 5895 -226 1610 153 44 0 chr11 10110806 10111119 -140672434 + AluJb SINE Alu 1 325 0 322 276 71 63 chr11 10111119 10111190 -140672363 + L1ME4a LINE L1 5895 5964 -157 36 23 0 0 chr11 10111382 10111425 -140672128 + AT_rich Low_complexity Low_complexity 1 43 0 1747 185 14 71 chr11 10111440 10111521 -140672032 + MLT1A1 LTR MaLR 1 85 -280 2030 94 0 30 chr11 10111521 10111818 -140671735 + AluSc SINE Alu 2 289 -20 1747 185 14 71 chr11 10111818 10112103 -140671450 + MLT1A1 LTR MaLR 85 346 -19 555 128 12 0 chr11 10112255 10112341 -140671212 + AluSg/x SINE Alu 212 298 -11 1881 172 7 0 chr11 10113075 10113366 -140670187 + AluJo SINE Alu 1 293 -19 31 0 0 0 chr11 10113420 10113451 -140670102 + AT_rich Low_complexity Low_complexity 1 31 0 233 304 108 39 chr11 10113669 10113771 -140669782 + LTR16B LTR ERVL 119 227 -237 1832 147 6 55 chr11 10114011 10114337 -140669216 - AluJb SINE Alu -2 310 1 1987 144 7 3 chr11 10114643 10114949 -140668604 + AluSx SINE Alu 1 307 -5 28 61 0 0 chr11 10114982 10115031 -140668522 + AT_rich Low_complexity Low_complexity 1 49 0 423 214 151 31 chr11 10115550 10115709 -140667844 - MIR3 SINE MIR -25 183 6 386 286 26 94 chr11 10115796 10115988 -140667565 + L2 LINE L2 3021 3199 -73 936 115 0 183 chr11 10116458 10116693 -140666860 - 7SK RNA RNA 0 193 2 872 211 100 21 chr11 10116779 10116921 -140666632 - MER33 DNA MER1_type -2273 312 183 2086 117 0 0 chr11 10116921 10117202 -140666351 + AluSq SINE Alu 19 299 -14 872 211 100 21 chr11 10117202 10117348 -140666205 - MER33 DNA MER1_type -2402 183 1 2187 106 0 3 chr11 10117650 10117972 -140665581 + AluY SINE Alu 1 321 0 189 0 0 0 chr11 10119055 10119076 -140664477 + (A)n Simple_repeat Simple_repeat 1 21 0 313 101 0 117 chr11 10119296 10119373 -140664180 + Alu SINE Alu 1 47 -256 947 195 5 70 chr11 10120536 10120751 -140662802 - AluJo SINE Alu -27 285 85 1495 205 10 27 chr11 10120752 10121049 -140662504 - AluJo SINE Alu -15 297 6 195 340 0 0 chr11 10121056 10121103 -140662450 + MIR SINE MIR 46 92 -170 2277 113 2 59 chr11 10121128 10121156 -140662397 - Tigger2a DNA MER2_type -2316 392 364 1387 155 143 19 chr11 10121156 10121414 -140662139 - AluSg SINE Alu -20 290 1 2277 113 2 59 chr11 10121414 10121794 -140661759 - Tigger2a DNA MER2_type -2344 364 7 309 296 144 8 chr11 10121795 10121920 -140661633 + MIR SINE MIR 103 244 -18 192 40 0 0 chr11 10121959 10121984 -140661569 + (CTG)n Simple_repeat Simple_repeat 2 26 0 30 27 0 0 chr11 10122278 10122315 -140661238 + AT_rich Low_complexity Low_complexity 1 37 0 1597 187 3 47 chr11 10122315 10122615 -140660938 - AluJb SINE Alu -25 287 1 311 318 99 26 chr11 10123046 10123197 -140660356 + MIR3 SINE MIR 20 181 -27 198 0 0 0 chr11 10123615 10123637 -140659916 + (TA)n Simple_repeat Simple_repeat 2 23 0 403 225 181 0 chr11 10123798 10123958 -140659595 - L1MC4a LINE L1 -1860 5948 5760 24 32 0 0 chr11 10124132 10124163 -140659390 + AT_rich Low_complexity Low_complexity 1 31 0 287 246 43 14 chr11 10125023 10125092 -140658461 - MIR3 SINE MIR -51 157 87 195 324 14 28 chr11 10125277 10125348 -140658205 + L2 LINE L2 3239 3308 -5 6258 51 14 14 chr11 10125979 10126406 -140657147 + L1PA8A LINE L1 5254 5683 -448 2151 120 0 17 chr11 10126406 10126707 -140656846 + AluSq SINE Alu 3 298 -15 6258 51 14 14 chr11 10126707 10127128 -140656425 + L1PA8A LINE L1 5682 6102 -29 198 91 0 0 chr11 10127129 10127162 -140656391 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1161 142 25 15 chr11 10127205 10127409 -140656144 - AluJb SINE Alu -22 290 85 21 0 0 0 chr11 10127705 10127726 -140655827 + AT_rich Low_complexity Low_complexity 1 21 0 234 174 0 0 chr11 10127889 10127935 -140655618 + (CA)n Simple_repeat Simple_repeat 2 47 0 759 199 23 0 chr11 10128327 10128458 -140655095 + AluJo SINE Alu 1 134 -178 30 27 0 0 chr11 10128541 10128578 -140654975 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 10128618 10128639 -140654914 + AT_rich Low_complexity Low_complexity 1 21 0 2094 120 29 13 chr11 10128672 10128980 -140654573 - AluSq SINE Alu 0 313 1 1676 189 0 17 chr11 10129182 10129483 -140654070 - AluJo SINE Alu -16 296 1 2121 137 0 0 chr11 10129491 10129798 -140653755 - AluSx SINE Alu -5 307 1 1932 147 0 23 chr11 10129802 10130102 -140653451 - AluSx SINE Alu -19 293 1 1015 142 73 0 chr11 10130183 10130387 -140653166 - L1MA8 LINE L1 -3 6288 6070 1378 163 38 0 chr11 10130461 10130725 -140652828 + L1MB7 LINE L1 5895 6168 -16 1681 163 4 8 chr11 10130970 10131221 -140652332 + AluJo SINE Alu 1 250 -62 324 316 175 12 chr11 10131912 10132083 -140651470 - MIR SINE MIR -58 204 6 288 102 20 0 chr11 10132569 10132618 -140650935 - AluSp/q SINE Alu -7 296 247 1742 165 16 44 chr11 10133103 10133419 -140650134 - AluJb SINE Alu -5 307 1 1931 160 51 33 chr11 10133609 10134059 -140649494 - L1MB7 LINE L1 0 6184 5727 701 324 53 83 chr11 10134063 10134474 -140649079 + L2 LINE L2 2874 3272 0 458 224 0 0 chr11 10134707 10134814 -140648739 - L1MB7 LINE L1 -19 6165 6059 1898 139 13 17 chr11 10135068 10135391 -140648162 - AluSx SINE Alu 0 312 1 181 280 140 47 chr11 10135449 10135556 -140647997 + L2 LINE L2 3183 3299 -14 22 56 0 0 chr11 10136478 10136514 -140647039 + AT_rich Low_complexity Low_complexity 1 36 0 255 203 47 0 chr11 10136742 10136806 -140646747 - L1MB7 LINE L1 -237 5941 5875 1723 168 28 31 chr11 10137227 10137606 -140645947 - L1MB1 LINE L1 -9 6159 5780 2290 119 0 0 chr11 10137606 10137918 -140645635 - AluSx SINE Alu 0 312 1 1723 168 28 31 chr11 10137918 10137930 -140645623 - L1MB1 LINE L1 -388 5780 5769 698 139 8 23 chr11 10137949 10138078 -140645475 - L1PB2 LINE L1 0 6151 6025 2714 141 4 6 chr11 10138079 10138563 -140644990 - L1MB1 LINE L1 -388 5780 5298 192 40 0 0 chr11 10138791 10138816 -140644737 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1642 168 3 52 chr11 10139115 10139443 -140644110 - AluJo SINE Alu 0 312 1 313 117 39 0 chr11 10139454 10139531 -140644022 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr11 10139538 10139561 -140643992 + AT_rich Low_complexity Low_complexity 1 23 0 670 205 0 0 chr11 10139561 10139673 -140643880 - FLAM_C SINE Alu -25 118 7 198 91 0 0 chr11 10139851 10139884 -140643669 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 328 238 95 106 chr11 10139884 10140073 -140643480 + LTR67 LTR ERVL 32 218 -339 318 219 15 133 chr11 10140132 10140328 -140643225 + LTR67 LTR ERVL 363 535 -22 362 347 55 36 chr11 10140370 10140589 -140642964 + L2 LINE L2 2869 3091 -181 207 383 74 0 chr11 10140795 10140876 -140642677 + L2 LINE L2 3125 3211 -61 581 178 0 0 chr11 10140897 10140987 -140642566 + FLAM_C SINE Alu 29 118 -25 29 60 0 0 chr11 10140987 10141037 -140642516 + AT_rich Low_complexity Low_complexity 1 50 0 1744 88 161 4 chr11 10141193 10141454 -140642099 - AluSx SINE Alu 0 302 1 437 262 117 0 chr11 10142758 10142903 -140640650 + MIR SINE MIR 86 247 -15 430 299 7 0 chr11 10142916 10143060 -140640493 - L1MB7 LINE L1 -426 5695 5551 1064 137 37 0 chr11 10143265 10143426 -140640127 - AluSq SINE Alu -8 305 139 1825 153 13 32 chr11 10143428 10143736 -140639817 - AluJb SINE Alu -10 302 1 513 283 127 67 chr11 10143738 10143947 -140639606 - LTR67 LTR ERVL -60 497 302 2348 102 76 15 chr11 10143947 10144290 -140639263 - THE1B LTR MaLR 0 364 1 513 283 127 67 chr11 10144290 10144546 -140639007 - LTR67 LTR ERVL -255 302 4 928 245 69 4 chr11 10144859 10145092 -140638461 + MIR SINE MIR 1 248 -14 599 334 63 12 chr11 10145259 10145591 -140637962 - L2 LINE L2 -1108 2206 1858 1778 135 0 80 chr11 10145809 10146135 -140637418 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 10147063 10147085 -140636468 + AT_rich Low_complexity Low_complexity 1 22 0 1832 147 45 0 chr11 10147282 10147568 -140635985 + AluJb SINE Alu 1 299 -13 1402 154 123 11 chr11 10147580 10147840 -140635713 + AluSg SINE Alu 1 289 -21 1055 114 81 0 chr11 10147856 10148005 -140635548 + AluSg/x SINE Alu 132 292 -18 21 0 0 0 chr11 10148388 10148409 -140635144 + AT_rich Low_complexity Low_complexity 1 21 0 258 302 12 36 chr11 10149237 10149270 -140634283 + T-rich Low_complexity Low_complexity 4 36 -206 2222 119 0 0 chr11 10149270 10149572 -140633981 - AluSx SINE Alu -9 303 2 258 302 12 36 chr11 10149572 10149700 -140633853 + T-rich Low_complexity Low_complexity 36 242 0 1734 194 16 10 chr11 10149915 10150225 -140633328 - AluJo SINE Alu 0 312 1 460 266 94 0 chr11 10150568 10150696 -140632857 - MIR SINE MIR -6 256 117 403 266 165 19 chr11 10150910 10151068 -140632485 - MER5A DNA MER1_type 0 189 9 735 211 108 5 chr11 10151223 10151417 -140632136 + MER58C DNA MER1_type 2 215 0 279 274 142 25 chr11 10151457 10151661 -140631892 - L2 LINE L2 -464 2850 2623 270 190 138 0 chr11 10151863 10151921 -140631632 + MER112 DNA MER1_type 178 243 -17 186 303 40 50 chr11 10152021 10152120 -140631433 - L2 LINE L2 -887 2427 2330 2057 129 10 10 chr11 10152221 10152531 -140631022 - AluSx SINE Alu -2 310 1 1821 121 86 0 chr11 10153455 10153735 -140629818 - AluSx SINE Alu -8 304 1 22 0 0 0 chr11 10153837 10153859 -140629694 + AT_rich Low_complexity Low_complexity 1 22 0 720 151 8 0 chr11 10153859 10153978 -140629575 + AluSq/x SINE Alu 1 120 -193 360 0 0 0 chr11 10153989 10154029 -140629524 + (TA)n Simple_repeat Simple_repeat 2 41 0 2204 120 0 3 chr11 10154029 10154329 -140629224 - AluSc SINE Alu -10 299 1 289 228 65 16 chr11 10154492 10154615 -140628938 + L1ME4a LINE L1 5989 6117 -4 7698 61 10 6 chr11 10154846 10156206 -140627347 - L1P2 LINE L1 -529 5625 4264 625 183 7 10 chr11 10156316 10156451 -140627102 - LTR27 LTR ERV1 -213 423 299 926 147 11 17 chr11 10156518 10156695 -140626858 - LTR28 LTR ERV1 -844 176 1 202 354 0 0 chr11 10156719 10156784 -140626769 - L2 LINE L2 -940 2374 2310 581 306 83 20 chr11 10156799 10156876 -140626677 + L2 LINE L2 2084 2155 -1159 2218 158 85 5 chr11 10156876 10157263 -140626290 + MER47B DNA MER2_type 1 418 0 581 306 83 20 chr11 10157263 10157437 -140626116 + L2 LINE L2 2155 2351 -963 1620 119 0 4 chr11 10157767 10157994 -140625559 - AluSc SINE Alu -83 226 1 346 204 64 14 chr11 10158142 10158296 -140625257 + L1ME4a LINE L1 1196 6118 0 2142 97 14 10 chr11 10159247 10159535 -140624018 + AluSg SINE Alu 1 289 -21 892 123 0 0 chr11 10159535 10159652 -140623901 - AluJo/FLAM SINE Alu -183 129 13 679 206 85 11 chr11 10159730 10159919 -140623634 - L1MC5 LINE L1 -68 7893 7691 21 82 0 0 chr11 10161416 10161465 -140622088 + AT_rich Low_complexity Low_complexity 1 49 0 2091 107 24 7 chr11 10161651 10161942 -140621611 - AluSg SINE Alu -14 296 1 1188 142 9 0 chr11 10162162 10162373 -140621180 - L1PA16 LINE L1 -153 6013 5801 300 207 187 20 chr11 10162534 10162684 -140620869 + MIR SINE MIR 14 188 -74 318 277 0 0 chr11 10162729 10162812 -140620741 + L1MC/D LINE L1 5725 5807 -2001 25 0 0 0 chr11 10163220 10163245 -140620308 + AT_rich Low_complexity Low_complexity 1 25 0 366 210 59 183 chr11 10163483 10163702 -140619851 - MIR3 SINE MIR -13 195 4 28 0 0 0 chr11 10165065 10165093 -140618460 + AT_rich Low_complexity Low_complexity 1 28 0 1231 119 0 97 chr11 10165195 10165422 -140618131 - MER46A DNA MER2_type 0 236 32 773 162 14 0 chr11 10165440 10165588 -140617965 - L1MD3 LINE L1 -1999 5996 5847 1533 161 61 7 chr11 10165884 10166163 -140617390 - AluJo SINE Alu -18 294 1 23 101 0 0 chr11 10166263 10166342 -140617211 + AT_rich Low_complexity Low_complexity 1 79 0 1091 253 30 33 chr11 10166429 10166796 -140616757 - L1MC4a LINE L1 -1833 5975 5610 4065 183 51 20 chr11 10166955 10168171 -140615382 - L1M4c LINE L1 -4831 2024 872 654 119 50 10 chr11 10168177 10168278 -140615275 + FLAM_C SINE Alu 9 113 -30 287 193 0 0 chr11 10168308 10168365 -140615188 - L1M4c LINE L1 -5978 881 825 * 1746 216 48 20 chr11 10168364 10168763 -140614790 - L1M4c LINE L1 -6439 420 11 2159 90 0 0 chr11 10168854 10169156 -140614397 + AluSc SINE Alu 1 302 0 298 297 143 0 chr11 10169707 10169798 -140613755 - L2 LINE L2 -1 3271 3168 1739 135 50 30 chr11 10169823 10170120 -140613433 + AluJo SINE Alu 1 303 -9 551 211 92 0 chr11 10170149 10170258 -140613295 - MER94 DNA DNA 0 134 16 25 75 0 0 chr11 10172530 10172583 -140610970 + AT_rich Low_complexity Low_complexity 1 53 0 188 198 62 123 chr11 10173009 10173090 -140610463 - MER5A DNA MER1_type 0 189 114 934 185 121 24 chr11 10173094 10173343 -140610210 + AluSg SINE Alu 35 307 -3 28 48 0 0 chr11 10173493 10173535 -140610018 + AT_rich Low_complexity Low_complexity 1 42 0 1970 110 10 14 chr11 10173583 10173874 -140609679 - AluSc SINE Alu -19 290 1 7580 25 0 0 chr11 10174141 10175014 -140608539 - L1PA3 LINE L1 -3 6152 5280 328 264 365 6 chr11 10175302 10175469 -140608084 + MIR SINE MIR 16 242 -20 585 254 258 10 chr11 10175492 10175787 -140607766 + L3 LINE CR1 685 1052 -525 407 279 39 16 chr11 10175796 10175925 -140607628 - MIR SINE MIR -21 241 110 501 293 86 82 chr11 10175946 10176495 -140607058 - LTR67 LTR ERVL -4 553 3 289 279 89 0 chr11 10176543 10176622 -140606931 + L2 LINE L2 3228 3313 0 948 269 142 24 chr11 10176624 10177047 -140606506 + L3 LINE CR1 1042 1514 -63 317 251 280 23 chr11 10177298 10177473 -140606080 + MIR SINE MIR 30 249 -13 631 279 71 5 chr11 10177588 10177785 -140605768 + MIR SINE MIR 53 262 0 191 303 61 15 chr11 10177857 10177923 -140605630 + MIR3 SINE MIR 109 177 -31 815 207 52 123 chr11 10178374 10178683 -140604870 - LTR41 LTR ERVL -17 756 470 659 186 124 12 chr11 10178770 10178931 -140604622 - LTR41 LTR ERVL -594 179 1 754 204 137 31 chr11 10178964 10179190 -140604363 + MIR SINE MIR 11 260 -2 2312 73 0 19 chr11 10179377 10179694 -140603859 - AluY SINE Alu 0 311 1 2119 84 0 11 chr11 10180240 10180554 -140602999 + AluSx SINE Alu 1 311 0 21 36 0 0 chr11 10183067 10183095 -140600458 + AT_rich Low_complexity Low_complexity 1 28 0 2053 47 0 4 chr11 10183635 10183891 -140599662 + AluY SINE Alu 47 301 -10 1352 133 38 0 chr11 10183908 10184119 -140599434 + MER20 DNA MER1_type 1 219 0 1391 227 174 10 chr11 10184788 10185272 -140598281 + L1ME3 LINE L1 5580 6142 -20 1823 118 35 0 chr11 10185312 10185600 -140597953 - AluSx SINE Alu -14 298 1 207 286 91 13 chr11 10186703 10186780 -140596773 + MIR SINE MIR 20 102 -160 282 93 0 0 chr11 10188026 10188069 -140595484 + MADE1 DNA Mariner 38 80 0 351 241 120 8 chr11 10188659 10188792 -140594761 - MIR SINE MIR -68 194 47 250 132 0 57 chr11 10190257 10190310 -140593243 + L2 LINE L2 3223 3272 0 427 358 53 24 chr11 10190910 10191156 -140592397 + L2 LINE L2 2578 2830 -484 296 266 22 43 chr11 10191179 10191305 -140592248 + (TGGA)n Simple_repeat Simple_repeat 1 123 -57 2261 97 10 0 chr11 10191305 10191613 -140591940 + AluSq SINE Alu 1 311 -2 296 266 22 43 chr11 10191613 10191670 -140591883 + (TGGA)n Simple_repeat Simple_repeat 123 180 0 1931 240 48 26 chr11 10191961 10192771 -140590782 - L2 LINE L2 0 3313 2482 264 219 25 50 chr11 10193199 10193318 -140590235 + (TA)n Simple_repeat Simple_repeat 1 116 0 915 221 13 24 chr11 10193620 10193843 -140589710 + MLT1A1 LTR MaLR 173 365 0 909 239 6 0 chr11 10193970 10194137 -140589416 - MER5A DNA MER1_type -21 168 1 1382 323 113 23 chr11 10194609 10195603 -140587950 + L2 LINE L2 1606 2688 -626 205 219 62 16 chr11 10196158 10196222 -140587331 - MIR3 SINE MIR -33 175 109 412 264 33 30 chr11 10196667 10196813 -140586740 + MIR SINE MIR 1 149 -59 236 258 18 126 chr11 10197293 10197460 -140586093 + L2 LINE L2 2966 3114 -158 2942 67 14 3 chr11 10197898 10198269 -140585284 + THE1C LTR MaLR 1 375 0 2110 147 68 66 chr11 10198622 10199120 -140584433 - MLT1D LTR MaLR -2 503 5 239 259 36 9 chr11 10199255 10199367 -140584186 + LTR16B LTR ERVL 291 405 -59 940 284 46 18 chr11 10199374 10199656 -140583897 + ERVL LTR ERVL 1739 2028 -2968 840 314 20 4 chr11 10199696 10199951 -140583602 + ERVL LTR ERVL 4254 4512 -1252 303 311 42 36 chr11 10199976 10200169 -140583384 + ERVL LTR ERVL 4935 5128 -636 351 308 23 0 chr11 10200281 10200414 -140583139 + ERVL LTR ERVL 5191 5326 -328 2203 218 78 53 chr11 10200559 10200609 -140582944 - MER65A-int LTR ERV1 -3972 899 852 1781 159 7 0 chr11 10200609 10200904 -140582649 - AluSx SINE Alu -8 304 8 2203 218 78 53 chr11 10200904 10200955 -140582598 - MER65A-int LTR ERV1 -4019 852 804 1893 139 0 0 chr11 10200955 10201281 -140582272 - AluJb SINE Alu 0 326 1 2203 218 78 53 chr11 10201281 10201675 -140581878 - MER65A-int LTR ERV1 -4067 804 376 3793 41 5 2 chr11 10201675 10202116 -140581437 - MLT2A1 LTR ERVL -2 442 1 2203 218 78 53 chr11 10202116 10202318 -140581235 - MER65A-int LTR ERV1 -4495 376 181 2883 152 46 67 chr11 10202318 10202931 -140580622 + LTR9 LTR ERV1 1 600 -12 288 287 16 25 chr11 10202958 10203080 -140580473 - MER65A-int LTR ERV1 -4703 168 48 2712 111 27 36 chr11 10203124 10203182 -140580371 - MER65A LTR ERV1 0 445 388 2353 122 71 29 chr11 10203182 10203222 -140580331 - MSTA LTR MaLR 0 428 391 2840 6 0 0 chr11 10203222 10203538 -140580015 + AluYb8 SINE Alu 1 316 -2 2353 122 71 29 chr11 10203538 10203550 -140580003 - MSTA LTR MaLR -37 391 381 1777 160 24 0 chr11 10203550 10203843 -140579710 + AluJo SINE Alu 2 301 -11 2353 122 71 29 chr11 10203843 10204200 -140579353 - MSTA LTR MaLR -47 381 1 2712 111 27 36 chr11 10204200 10204549 -140579004 - MER65A LTR ERV1 -57 388 40 252 59 0 0 chr11 10204549 10204583 -140578970 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2712 111 27 36 chr11 10204583 10204623 -140578930 - MER65A LTR ERV1 -405 40 1 1309 267 55 0 chr11 10204630 10204960 -140578593 + LTR16B LTR ERVL 9 356 -108 450 161 354 15 chr11 10205055 10205185 -140578368 + MER5A DNA MER1_type 16 189 0 331 301 116 7 chr11 10205278 10205424 -140578129 - MIR3 SINE MIR -43 165 4 361 291 0 0 chr11 10205489 10205575 -140577978 + MER21B LTR ERV1 1 86 -777 1267 215 109 15 chr11 10205647 10206205 -140577348 + MER21B LTR ERV1 98 754 -109 561 172 203 44 chr11 10206258 10206485 -140577068 + MER33 DNA MER1_type 62 324 0 4606 147 62 25 chr11 10206930 10207808 -140575745 - MER4D LTR ERV1 0 872 1 2084 55 0 36 chr11 10208264 10208539 -140575014 + AluY SINE Alu 38 302 -9 21 0 0 0 chr11 10209379 10209400 -140574153 + AT_rich Low_complexity Low_complexity 1 21 0 1837 133 30 10 chr11 10212083 10212383 -140571170 + AluJb SINE Alu 1 306 -6 494 274 116 3 chr11 10212385 10212738 -140570815 + L1ME4a LINE L1 5203 5597 -743 2273 94 3 0 chr11 10212771 10213079 -140570474 + AluSx SINE Alu 1 309 -3 227 343 0 0 chr11 10214017 10214084 -140569469 + L2 LINE L2 3206 3272 0 268 204 148 37 chr11 10214845 10214953 -140568600 + L1ME4a LINE L1 6000 6119 -2 264 253 247 33 chr11 10215199 10215381 -140568172 + MIR SINE MIR 32 252 -10 2361 66 0 14 chr11 10215455 10215742 -140567811 - AluSc SINE Alu -23 286 4 2247 82 0 50 chr11 10217142 10217461 -140566092 - AluY SINE Alu -8 303 1 1903 264 107 35 chr11 10217959 10218606 -140564947 - MER115 DNA AcHobo 0 693 1 703 209 68 12 chr11 10220093 10220256 -140563297 + MER5B DNA MER1_type 1 172 -6 2108 104 7 0 chr11 10220711 10220999 -140562554 + AluSx SINE Alu 6 295 -17 192 143 89 54 chr11 10221242 10221298 -140562255 + MIR3 SINE MIR 143 200 -8 1725 137 0 83 chr11 10221322 10221635 -140561918 - AluJb SINE Alu -25 287 1 394 259 118 22 chr11 10221716 10221851 -140561702 - MIR SINE MIR -30 232 85 941 170 0 82 chr11 10221893 10221940 -140561613 - MER5B DNA MER1_type 0 178 129 2118 140 0 3 chr11 10221940 10222248 -140561305 - AluSx SINE Alu -5 307 1 941 170 0 82 chr11 10222248 10222394 -140561159 - MER5B DNA MER1_type -49 129 1 1043 179 10 0 chr11 10222544 10222762 -140560791 + AluJb SINE Alu 87 306 0 1956 124 32 38 chr11 10222950 10223264 -140560289 + AluSx SINE Alu 1 312 0 597 249 24 83 chr11 10223789 10224042 -140559511 - MIR SINE MIR -8 254 17 503 281 59 59 chr11 10224668 10224924 -140558629 - MIR SINE MIR -6 256 1 1902 112 11 21 chr11 10226249 10226534 -140557019 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr11 10226534 10226565 -140556988 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2493 69 0 19 chr11 10227220 10227537 -140556016 + AluY SINE Alu 1 311 0 809 185 94 22 chr11 10228395 10228511 -140555042 - L1MC/D LINE L1 -743 5403 5297 1865 179 3 0 chr11 10228511 10228807 -140554746 + AluSx SINE Alu 1 297 -15 809 185 94 22 chr11 10228807 10228946 -140554607 - L1MC/D LINE L1 -849 5297 5167 27 0 0 0 chr11 10228946 10228973 -140554580 + AT_rich Low_complexity Low_complexity 1 27 0 2429 59 0 3 chr11 10228973 10229262 -140554291 - AluY SINE Alu -23 288 1 831 158 24 0 chr11 10229272 10229399 -140554154 - FLAM_C SINE Alu -1 132 3 644 209 44 0 chr11 10229406 10229564 -140553989 - L1MC/D LINE L1 -2811 3335 3171 30 27 0 0 chr11 10231560 10231597 -140551956 + AT_rich Low_complexity Low_complexity 1 37 0 625 281 98 72 chr11 10232301 10232689 -140550864 + HAL1 LINE L1 73 482 -2025 183 42 0 0 chr11 10232689 10232713 -140550840 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 625 281 98 72 chr11 10232713 10232907 -140550646 + HAL1 LINE L1 482 670 -1837 1777 233 24 9 chr11 10232996 10233421 -140550132 - L1ME1 LINE L1 -5 6161 5731 1108 201 97 37 chr11 10233422 10233517 -140550036 - L1MD2 LINE L1 -315 6044 5956 1967 164 0 3 chr11 10233517 10233815 -140549738 + AluSx SINE Alu 1 297 -15 1108 201 97 37 chr11 10233815 10234018 -140549535 - L1MD2 LINE L1 -403 5956 5728 2108 101 3 7 chr11 10234178 10234475 -140549078 - AluSc SINE Alu -13 296 1 232 337 50 40 chr11 10234603 10234704 -140548849 - L2 LINE L2 -48 3224 3123 349 191 24 36 chr11 10234798 10234882 -140548671 + MIR SINE MIR 180 262 0 858 193 99 9 chr11 10235248 10235471 -140548082 + L1MB8 LINE L1 5931 6173 -5 1263 124 0 0 chr11 10235895 10236086 -140547467 - L1PA16 LINE L1 -194 5957 5767 22 35 0 0 chr11 10237412 10237441 -140546112 + AT_rich Low_complexity Low_complexity 1 29 0 776 206 0 0 chr11 10237740 10237871 -140545682 + AluSq/x SINE Alu 3 133 -180 2171 115 3 3 chr11 10238099 10238394 -140545159 - AluSx SINE Alu -12 300 6 528 194 0 40 chr11 10238416 10238540 -140545013 + L1MB7 LINE L1 6051 6169 -15 2106 133 3 3 chr11 10238548 10238849 -140544704 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr11 10239007 10239029 -140544524 + AT_rich Low_complexity Low_complexity 1 22 0 5033 95 37 1 chr11 10239236 10239912 -140543641 + L1PA15 LINE L1 5463 6162 -3 719 141 0 0 chr11 10240389 10240488 -140543065 + AluJ/FLAM SINE Alu 2 100 -212 262 225 142 33 chr11 10241763 10241883 -140541670 - L1ME4a LINE L1 -1 6120 5988 2151 102 10 7 chr11 10241885 10242178 -140541375 - AluSc SINE Alu -15 294 1 2089 134 0 7 chr11 10242212 10242518 -140541035 + AluSx SINE Alu 1 304 -8 630 158 17 25 chr11 10242845 10242965 -140540588 + L1MB2 LINE L1 6038 6156 -15 255 196 0 20 chr11 10242973 10243024 -140540529 + L1ME LINE L1 5615 5664 -457 1677 127 13 71 chr11 10243713 10244021 -140539532 + AluSc SINE Alu 3 292 -17 211 300 0 17 chr11 10244041 10244101 -140539452 + GA-rich Low_complexity Low_complexity 3 61 0 228 246 0 0 chr11 10245182 10245243 -140538310 + (TA)n Simple_repeat Simple_repeat 1 61 0 1286 179 71 40 chr11 10246179 10246476 -140537077 + AluJb SINE Alu 5 310 -2 2407 87 3 0 chr11 10246498 10246797 -140536756 - AluSp SINE Alu -13 300 1 2405 76 0 0 chr11 10247284 10247574 -140535979 - AluSp SINE Alu -23 290 1 21 0 0 0 chr11 10248185 10248206 -140535347 + AT_rich Low_complexity Low_complexity 1 21 0 394 335 158 28 chr11 10249131 10249327 -140534226 + L2 LINE L2 2942 3188 -84 2430 96 207 5 chr11 10249327 10249714 -140533839 + MER4C LTR ERV1 1 465 0 394 335 158 28 chr11 10249714 10249801 -140533752 + L2 LINE L2 3188 3262 -10 492 211 48 80 chr11 10250171 10250463 -140533090 - MER112 DNA MER1_type -8 252 1 518 276 99 5 chr11 10250600 10250792 -140532761 - MIR SINE MIR 0 262 53 2673 33 0 0 chr11 10250811 10251112 -140532441 - AluY SINE Alu -10 301 1 204 309 29 15 chr11 10251338 10251406 -140532147 + L2 LINE L2 3187 3255 -17 323 221 15 0 chr11 10251438 10251506 -140532047 + MIR SINE MIR 54 122 -86 221 269 0 30 chr11 10252017 10252084 -140531469 + GA-rich Low_complexity Low_complexity 2 66 0 2392 89 0 19 chr11 10252830 10253145 -140530408 + AluSc SINE Alu 1 309 0 2845 110 106 9 chr11 10253610 10254036 -140529517 + MLT1C LTR MaLR 1 467 0 820 311 196 36 chr11 10254394 10255257 -140528296 + L3 LINE CR1 480 1480 -97 332 164 15 0 chr11 10255258 10255325 -140528228 + (TG)n Simple_repeat Simple_repeat 2 69 0 1941 83 0 149 chr11 10255343 10255693 -140527860 - AluSq SINE Alu -15 298 1 1791 148 16 26 chr11 10255803 10256107 -140527446 + AluJo SINE Alu 1 301 -11 899 125 0 0 chr11 10257563 10257691 -140525862 + FLAM_C SINE Alu 16 143 0 294 29 0 0 chr11 10258108 10258143 -140525410 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 411 143 12 168 chr11 10258846 10259007 -140524546 - MER104 DNA Tc2 -3 177 42 2468 90 0 0 chr11 10259013 10259325 -140524228 + AluSx SINE Alu 1 312 0 1887 153 7 7 chr11 10259554 10259854 -140523699 - AluJb SINE Alu -12 300 1 261 264 11 22 chr11 10260988 10261079 -140522474 + GA-rich Low_complexity Low_complexity 5 94 0 891 161 0 0 chr11 10261166 10261296 -140522257 - FLAM_C SINE Alu -3 130 1 2502 64 0 16 chr11 10261964 10262275 -140521278 - AluY SINE Alu -5 306 1 595 104 26 149 chr11 10262287 10262330 -140521223 - L1MB4 LINE L1 -6 6174 6127 2340 75 17 0 chr11 10262330 10262624 -140520929 - AluSp SINE Alu -14 299 1 595 104 26 149 chr11 10262624 10262635 -140520918 - L1MB4 LINE L1 -53 6127 6116 2203 94 3 0 chr11 10262635 10262921 -140520632 - AluSp SINE Alu 0 313 27 595 104 26 149 chr11 10262921 10263019 -140520534 - L1MB4 LINE L1 -64 6116 6040 1613 224 52 72 chr11 10263791 10263893 -140519660 - L1ME3A LINE L1 -99 6140 6037 1726 145 10 52 chr11 10263893 10264203 -140519350 + AluJo SINE Alu 2 298 -14 1613 224 52 72 chr11 10264203 10264639 -140518914 - L1ME3A LINE L1 -202 6037 5613 1498 246 108 62 chr11 10264638 10265745 -140517808 - L1ME3A LINE L1 -945 5270 4113 * 360 286 0 0 chr11 10266006 10266104 -140517449 - L1ME3A LINE L1 -2262 3953 3856 589 258 52 34 chr11 10266158 10266302 -140517251 - L1ME3A LINE L1 -3921 2475 2335 2264 93 0 0 chr11 10266302 10266591 -140516962 - AluSc SINE Alu -20 289 1 589 258 52 34 chr11 10266591 10266795 -140516758 - L1ME3A LINE L1 -4061 2335 2121 578 220 64 7 chr11 10267567 10267708 -140515845 + MER58B DNA MER1_type 191 339 -2 2185 88 6 50 chr11 10268318 10268635 -140514918 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr11 10269468 10269489 -140514064 + AT_rich Low_complexity Low_complexity 1 21 0 2109 120 3 10 chr11 10269895 10270196 -140513357 - AluSx SINE Alu -13 299 1 22 0 0 0 chr11 10272155 10272177 -140511376 + AT_rich Low_complexity Low_complexity 1 22 0 416 102 17 0 chr11 10272179 10272238 -140511315 - U7 snRNA snRNA -2 61 2 949 209 51 105 chr11 10272922 10273112 -140510441 + L1MC4 LINE L1 7620 7819 -223 1282 69 0 17 chr11 10273112 10273287 -140510266 + L1PA8 LINE L1 6001 6172 0 949 209 51 105 chr11 10273287 10273526 -140510027 + L1MC4 LINE L1 7819 8026 -16 28 0 0 0 chr11 10274235 10274263 -140509290 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 10276076 10276097 -140507456 + AT_rich Low_complexity Low_complexity 1 21 0 460 236 73 73 chr11 10277422 10277600 -140505953 - MER5B DNA MER1_type 0 178 1 297 254 70 0 chr11 10277616 10277687 -140505866 - MIR3 SINE MIR -52 156 81 282 56 0 0 chr11 10278595 10278631 -140504922 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 1843 158 0 7 chr11 10278631 10278909 -140504644 - AluJo SINE Alu -26 286 11 362 327 12 48 chr11 10279131 10279215 -140504338 + L1MC4a LINE L1 5777 5854 -1954 2349 102 0 6 chr11 10279215 10279529 -140504024 + AluSx SINE Alu 1 312 0 362 327 12 48 chr11 10279529 10279612 -140503941 + L1MC4a LINE L1 5854 5938 -1870 1798 150 3 18 chr11 10280126 10280438 -140503115 - AluJb SINE Alu 0 308 1 387 272 35 26 chr11 10280524 10280638 -140502915 - MER5A DNA MER1_type -30 159 45 300 324 42 35 chr11 10280525 10280667 -140502886 + MER5A DNA MER1_type 43 185 -4 * 2543 153 84 19 chr11 10281201 10281769 -140501784 + L1MB4 LINE L1 5575 6179 -1 1648 149 38 60 chr11 10282938 10283254 -140500299 - AluJo SINE Alu -3 309 1 834 248 220 28 chr11 10283939 10284438 -140499115 - L2 LINE L2 -2 3311 2716 2629 43 0 0 chr11 10285148 10285448 -140498105 - AluY SINE Alu -11 300 1 351 294 203 0 chr11 10285879 10286032 -140497521 - MIR SINE MIR -8 254 71 27 49 0 0 chr11 10286091 10286132 -140497421 + AT_rich Low_complexity Low_complexity 1 41 0 1270 109 5 65 chr11 10288623 10288824 -140494729 - AluJb SINE Alu -11 301 113 231 108 0 0 chr11 10288827 10288864 -140494689 + Alu SINE Alu 200 236 -67 875 145 0 0 chr11 10288868 10288992 -140494561 - AluJb SINE Alu -188 124 1 1134 180 88 0 chr11 10289379 10289565 -140493988 - MER46A DNA MER2_type -2495 236 27 1517 173 40 40 chr11 10289565 10289743 -140493810 - AluJo SINE Alu -12 300 120 2365 109 0 0 chr11 10289743 10290045 -140493508 + AluSx SINE Alu 1 302 -10 1517 173 40 40 chr11 10290045 10290166 -140493387 - AluJo SINE Alu -191 121 1 1134 180 88 0 chr11 10290166 10290196 -140493357 - MER46A DNA MER2_type -2704 27 1 39 38 0 0 chr11 10291083 10291136 -140492417 + AT_rich Low_complexity Low_complexity 1 53 0 1876 163 0 0 chr11 10292756 10293045 -140490508 - AluJb SINE Alu -21 291 3 1264 165 5 27 chr11 10293268 10293492 -140490061 - AluJb SINE Alu -9 303 85 24 32 0 0 chr11 10293609 10293640 -140489913 + AT_rich Low_complexity Low_complexity 1 31 0 203 284 126 63 chr11 10293640 10293767 -140489786 - MIR SINE MIR -4 258 124 1587 193 33 3 chr11 10293770 10294071 -140489482 + AluSx SINE Alu 3 312 0 478 171 51 68 chr11 10294096 10294213 -140489340 - MIR SINE MIR -135 127 13 296 238 77 0 chr11 10294219 10294347 -140489206 - L1ME LINE L1 -345 5817 5682 3925 148 24 6 chr11 10294579 10295384 -140488169 + L1MA4 LINE L1 4634 5443 -743 1819 55 47 8 chr11 10295384 10295637 -140487916 + L1MA2 LINE L1 6037 6301 -3 4802 123 56 2 chr11 10295683 10296506 -140487047 + L1MA4 LINE L1 5428 6294 -6 247 67 67 0 chr11 10296506 10296551 -140487002 - L1MC5 LINE L1 -311 7650 7603 2043 55 3 86 chr11 10296575 10296865 -140486688 + AluY SINE Alu 5 270 -41 189 74 0 0 chr11 10296870 10296897 -140486656 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1595 209 72 71 chr11 10296962 10297613 -140485940 - L1MC5 LINE L1 -392 7569 6918 1662 113 0 0 chr11 10297676 10297898 -140485655 - AluSg/x SINE Alu -11 301 80 8795 136 12 7 chr11 10297898 10299052 -140484501 + L1P LINE L1 3828 4992 -1154 2303 95 0 0 chr11 10299052 10299348 -140484205 + AluSc SINE Alu 1 296 -13 8795 136 12 7 chr11 10299348 10299727 -140483826 + L1P LINE L1 4992 5368 -778 880 97 28 28 chr11 10299859 10300003 -140483550 + AluY SINE Alu 168 311 0 7928 84 22 2 chr11 10300003 10301222 -140482331 + L1PA11 LINE L1 3294 4536 -1610 4587 111 44 0 chr11 10301522 10302210 -140481343 + L1PA11 LINE L1 5455 6172 -2 951 194 87 0 chr11 10302218 10302460 -140481093 + L1ME LINE L1 5310 5572 -594 546 181 0 0 chr11 10302471 10302554 -140480999 + AluS SINE Alu 1 83 -230 1946 88 0 0 chr11 10302720 10302969 -140480584 + AluY SINE Alu 59 307 -4 2283 76 0 33 chr11 10303504 10303808 -140479745 + AluSq SINE Alu 1 294 -19 180 419 73 0 chr11 10305677 10305801 -140477752 - MIR3 SINE MIR -24 184 52 229 388 54 0 chr11 10305932 10306061 -140477492 + L2 LINE L2 2917 3052 -220 880 187 113 127 chr11 10306085 10306464 -140477089 + MLT1A2 LTR MaLR 1 374 0 2140 124 3 0 chr11 10306480 10306778 -140476775 - AluSx SINE Alu -13 299 1 7108 53 11 0 chr11 10307140 10308259 -140475294 - L1PA6 LINE L1 -7 6147 5028 271 284 30 0 chr11 10309281 10309348 -140474205 + L2 LINE L2 3150 3218 -54 349 317 156 27 chr11 10309397 10309541 -140474012 - MIR SINE MIR -6 256 132 2195 139 3 0 chr11 10309541 10309851 -140473702 + AluSx SINE Alu 1 311 -1 349 317 156 27 chr11 10309851 10309930 -140473623 - MIR SINE MIR -130 132 4 365 330 60 0 chr11 10309997 10310212 -140473341 + Charlie8 DNA MER1_type 27 254 -2163 360 288 153 0 chr11 10310551 10310662 -140472891 + L3 LINE CR1 568 695 -882 1308 164 0 23 chr11 10311525 10311744 -140471809 + AluJo SINE Alu 87 300 -12 2174 92 41 3 chr11 10312265 10312559 -140470994 + AluSg SINE Alu 1 305 -5 1238 198 8 21 chr11 10312764 10313056 -140470497 - L1M1 LINE L1 -398 5785 5494 2444 62 10 0 chr11 10313128 10313420 -140470133 - AluSx SINE Alu -17 295 1 387 150 168 9 chr11 10313434 10313547 -140470006 - HsTC2 DNA Tc2 -49 1849 1 460 246 231 10 chr11 10314177 10314380 -140469173 + L2 LINE L2 3064 3311 -2 323 119 51 0 chr11 10314857 10314916 -140468637 - LTR50 LTR ERVL 0 795 734 2140 137 0 6 chr11 10314916 10315231 -140468322 - AluSq SINE Alu 0 313 1 1192 176 0 12 chr11 10315146 10315233 -140468320 - AluJo SINE Alu -92 220 134 1879 156 0 20 chr11 10315233 10315395 -140468158 - AluJb SINE Alu -17 295 140 2260 108 0 3 chr11 10315395 10315692 -140467861 - AluSc SINE Alu -12 297 2 1879 156 0 20 chr11 10315692 10315830 -140467723 - AluJb SINE Alu -172 140 1 1192 176 0 12 chr11 10315830 10315966 -140467587 - AluJo SINE Alu -178 134 1 616 156 50 124 chr11 10315968 10316186 -140467367 - LTR41 LTR ERVL -54 719 518 610 265 6 11 chr11 10316411 10316592 -140466961 - LTR41 LTR ERVL -586 187 8 22 56 0 0 chr11 10316832 10316868 -140466685 + AT_rich Low_complexity Low_complexity 1 36 0 190 250 96 67 chr11 10316874 10316978 -140466575 - L2 LINE L2 -12 3301 3195 2231 100 3 0 chr11 10317073 10317364 -140466189 + AluSp SINE Alu 3 294 -19 21 0 0 0 chr11 10317364 10317385 -140466168 + AT_rich Low_complexity Low_complexity 1 21 0 1816 115 0 0 chr11 10317565 10317809 -140465744 + AluSx SINE Alu 55 298 -14 2345 90 0 7 chr11 10318779 10319078 -140464475 - AluSq SINE Alu -16 297 1 1251 170 54 81 chr11 10319565 10319692 -140463861 - L1MB7 LINE L1 -17 6167 6038 255 61 0 0 chr11 10319692 10319725 -140463828 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2153 141 0 3 chr11 10319725 10320038 -140463515 + AluSx SINE Alu 1 312 0 1251 170 54 81 chr11 10320038 10320244 -140463309 - L1MB7 LINE L1 -144 6040 5842 222 317 142 17 chr11 10321041 10321161 -140462392 - MIR SINE MIR -113 149 15 1635 186 7 29 chr11 10321407 10321714 -140461839 - AluJb SINE Alu -12 300 1 45 45 0 0 chr11 10322668 10322734 -140460819 + AT_rich Low_complexity Low_complexity 1 66 0 260 87 239 0 chr11 10323283 10323329 -140460224 + AluSc SINE Alu 232 288 -11 26 30 0 0 chr11 10324527 10324560 -140458993 + AT_rich Low_complexity Low_complexity 1 33 0 2311 123 0 0 chr11 10324653 10324961 -140458592 - AluSx SINE Alu -4 308 1 466 250 57 14 chr11 10325769 10325909 -140457644 + MER5B DNA MER1_type 4 149 -29 216 292 42 31 chr11 10326325 10326421 -140457132 - MIR SINE MIR 0 262 166 1989 131 3 7 chr11 10327067 10327357 -140456196 + AluSx SINE Alu 1 289 -23 205 167 0 0 chr11 10327722 10327758 -140455795 + A-rich Low_complexity Low_complexity 3 38 0 1680 191 7 33 chr11 10327890 10328194 -140455359 + AluJo SINE Alu 1 296 -16 27 0 0 0 chr11 10328708 10328735 -140454818 + AT_rich Low_complexity Low_complexity 1 27 0 1803 181 148 19 chr11 10328902 10329387 -140454166 + LTR10A LTR ERV1 1 548 -61 1709 159 41 21 chr11 10329419 10329709 -140453844 - AluJo SINE Alu -16 296 1 304 326 91 21 chr11 10329736 10329923 -140453630 + L1MEd LINE L1 2 201 -5918 1234 151 139 4 chr11 10330042 10330293 -140453260 + MER49 LTR ERV1 1 285 -638 * 2904 152 96 46 chr11 10330277 10330323 -140453230 + MER4D LTR ERV1 50 92 -811 1673 158 18 14 chr11 10330323 10330608 -140452945 - AluJb SINE Alu -10 302 17 2904 152 96 46 chr11 10330608 10331271 -140452282 + MER4D LTR ERV1 92 893 -10 224 331 0 22 chr11 10331615 10331718 -140451835 + A-rich Low_complexity Low_complexity 1 102 -31 2437 70 0 3 chr11 10331718 10332020 -140451533 + AluY SINE Alu 1 301 -10 224 331 0 22 chr11 10332020 10332052 -140451501 + A-rich Low_complexity Low_complexity 102 133 0 1998 218 110 28 chr11 10332108 10332778 -140450775 - MER50 LTR ERV1 0 734 10 1344 245 24 63 chr11 10332803 10333421 -140450132 + L1MEd LINE L1 2137 2726 -3403 1633 201 10 7 chr11 10333421 10333724 -140449829 + AluJo SINE Alu 1 304 -8 1344 245 24 63 chr11 10333724 10333804 -140449749 + L1MEd LINE L1 2726 2808 -3321 312 231 15 0 chr11 10333804 10333869 -140449684 + MIR SINE MIR 197 262 0 353 93 0 37 chr11 10334130 10334184 -140449369 - L2 LINE L2 -1 3312 3261 900 293 8 16 chr11 10336438 10336687 -140446866 - MIR SINE MIR 0 262 16 2536 37 0 7 chr11 10337022 10337316 -140446237 + AluY SINE Alu 1 292 -19 186 43 0 0 chr11 10337365 10337388 -140446165 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1645 167 48 11 chr11 10337396 10337666 -140445887 - AluJb SINE Alu -32 280 1 2568 47 3 0 chr11 10338068 10338366 -140445187 + AluY SINE Alu 1 299 -12 246 320 156 16 chr11 10338571 10338815 -140444738 + L1ME LINE L1 4869 5146 -1000 6390 121 27 64 chr11 10338817 10339444 -140444109 + Tigger3b DNA MER2_type 2 651 -2377 2092 111 6 44 chr11 10339444 10339760 -140443793 + AluSc SINE Alu 1 304 -5 2114 96 0 61 chr11 10339763 10340076 -140443477 + AluSg1 SINE Alu 1 294 -15 6390 121 27 64 chr11 10340076 10340598 -140442955 + Tigger3b DNA MER2_type 653 1193 -1835 1172 107 45 102 chr11 10340598 10340713 -140442840 - MER30 DNA MER1_type 0 230 110 1958 93 12 0 chr11 10340713 10340961 -140442592 + AluSg SINE Alu 1 251 -59 1172 107 45 102 chr11 10340961 10340983 -140442570 - MER30 DNA MER1_type -120 110 88 2206 100 10 3 chr11 10340983 10341273 -140442280 + AluSg SINE Alu 1 292 -18 1172 107 45 102 chr11 10341273 10341378 -140442175 - MER30 DNA MER1_type -142 88 1 6390 121 27 64 chr11 10341378 10341486 -140442067 + Tigger3b DNA MER2_type 1193 1217 -14 1028 233 82 35 chr11 10341577 10341684 -140441869 + L1ME LINE L1 5258 5358 -804 1714 174 41 0 chr11 10341684 10341977 -140441576 + AluJb SINE Alu 2 306 -6 1028 233 82 35 chr11 10341977 10342322 -140441231 + L1ME LINE L1 5358 5624 -538 369 0 0 0 chr11 10342322 10342363 -140441190 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 1028 233 82 35 chr11 10342363 10342393 -140441160 + L1ME LINE L1 5624 5651 -511 649 176 8 15 chr11 10342404 10342536 -140441017 + L1MCb LINE L1 579 923 -5373 717 148 0 25 chr11 10342561 10342683 -140440870 - FLAM_C SINE Alu -24 119 1 2214 124 8 3 chr11 10342683 10343046 -140440507 + L1MCb LINE L1 907 1271 -5293 1383 271 5 0 chr11 10343043 10343469 -140440084 + L1M4 LINE L1 4816 5246 -900 * 1315 166 0 4 chr11 10343469 10343698 -140439855 + L1MC1 LINE L1 6105 6332 -1 236 366 30 0 chr11 10343714 10343845 -140439708 - L2 LINE L2 -1190 2124 1990 2409 93 0 0 chr11 10343845 10344147 -140439406 + AluSc SINE Alu 1 302 -7 2216 128 0 3 chr11 10344459 10344764 -140438789 + AluSx SINE Alu 1 304 -8 1818 171 47 0 chr11 10345264 10345562 -140437991 - AluJo SINE Alu 0 312 1 26 30 0 0 chr11 10345899 10345932 -140437621 + AT_rich Low_complexity Low_complexity 1 33 0 2302 108 0 0 chr11 10346004 10346310 -140437243 - AluSx SINE Alu -6 306 1 333 260 125 82 chr11 10346446 10346654 -140436899 + L2 LINE L2 2237 2453 -861 531 259 89 57 chr11 10346917 10347026 -140436527 - HAL1 LINE L1 -2222 285 181 1852 152 3 59 chr11 10347026 10347349 -140436204 - AluJb SINE Alu -7 305 1 531 259 89 57 chr11 10347349 10347424 -140436129 - HAL1 LINE L1 -2326 181 110 2364 71 0 14 chr11 10347424 10347720 -140435833 - AluY SINE Alu -19 292 1 531 259 89 57 chr11 10347720 10347781 -140435772 - HAL1 LINE L1 -2397 110 31 504 139 0 0 chr11 10347931 10348017 -140435536 - AluSp SINE Alu 0 313 228 1906 165 68 34 chr11 10348017 10348459 -140435094 - LTR2B LTR ERV1 0 490 34 1716 108 4 4 chr11 10348481 10348712 -140434841 - AluSp SINE Alu -82 231 1 226 170 0 0 chr11 10348874 10348921 -140434632 + LTR66 LTR ERVL 394 440 -170 835 197 16 42 chr11 10349688 10349742 -140433811 + MER5A DNA MER1_type 2 56 -133 2287 101 3 0 chr11 10349742 10350050 -140433503 - AluSp SINE Alu -4 309 1 835 197 16 42 chr11 10350050 10350188 -140433365 + MER5A DNA MER1_type 56 189 0 1807 178 3 16 chr11 10350644 10350959 -140432594 + AluJo SINE Alu 1 311 -1 3879 140 18 2 chr11 10351377 10351978 -140431575 + LTR36 LTR ERV1 1 611 0 234 0 0 0 chr11 10351989 10352015 -140431538 + (CAA)n Simple_repeat Simple_repeat 2 27 0 832 192 31 104 chr11 10352788 10352809 -140430744 - MER33 DNA MER1_type -2261 324 303 2245 132 0 52 chr11 10352809 10353105 -140430448 + MER47A DNA MER2_type 1 311 -2012 2183 99 0 0 chr11 10353105 10353411 -140430142 - AluSx SINE Alu 0 306 1 1918 175 0 6 chr11 10353414 10353728 -140429825 - AluJb SINE Alu 0 312 1 2245 132 0 52 chr11 10353728 10353812 -140429741 + MER47A DNA MER2_type 313 366 0 832 192 31 104 chr11 10353812 10353980 -140429573 - MER33 DNA MER1_type -2282 303 165 1988 91 51 7 chr11 10353980 10354255 -140429298 - AluSp SINE Alu -26 287 1 832 192 31 104 chr11 10354255 10354382 -140429171 - MER33 DNA MER1_type -2420 165 30 569 254 47 22 chr11 10355131 10356134 -140427419 + L1ME1 LINE L1 2676 3786 -2360 430 235 130 9 chr11 10356134 10356249 -140427304 + FLAM_C SINE Alu 3 131 -2 569 254 47 22 chr11 10356249 10356511 -140427042 + L1ME1 LINE L1 3786 4040 -2106 1935 225 31 11 chr11 10356556 10357405 -140426148 + L1ME1 LINE L1 4906 5767 -399 7953 104 20 16 chr11 10357405 10358613 -140424940 + HSMAR1 DNA Mariner 11 1223 -64 1460 88 18 14 chr11 10358628 10358845 -140424708 + L1PA10 LINE L1 5950 6167 -1 537 79 0 0 chr11 10358861 10358937 -140424616 + HSMAR1 DNA Mariner 1212 1287 0 639 238 58 56 chr11 10358937 10359290 -140424263 + L1ME1 LINE L1 5781 6005 -161 34954 85 6 34 chr11 10359312 10362648 -140420905 + L1PA6 LINE L1 12 3196 -2958 694 129 26 0 chr11 10362648 10362764 -140420789 + AluY SINE Alu 168 286 -25 34954 85 6 34 chr11 10362764 10365571 -140417982 + L1PA6 LINE L1 3196 6082 -72 447 232 10 0 chr11 10365639 10365738 -140417815 - MSTD LTR MaLR -294 102 3 624 234 27 38 chr11 10365787 10365971 -140417582 + HAL1 LINE L1 1283 1464 -1043 403 290 88 55 chr11 10365991 10366689 -140416864 + L1ME LINE L1 3813 4541 -1605 2254 82 3 7 chr11 10366689 10366994 -140416559 + AluY SINE Alu 1 304 -7 403 290 88 55 chr11 10366994 10367077 -140416476 + L1ME LINE L1 4541 4620 -1526 243 352 6 6 chr11 10367490 10367666 -140415887 + L1ME LINE L1 4777 4952 -1194 2049 96 7 7 chr11 10368033 10368352 -140415201 - AluSg SINE Alu 0 319 1 360 259 24 0 chr11 10368447 10368532 -140415021 - L2 LINE L2 0 3313 3227 313 302 42 0 chr11 10368606 10368702 -140414851 + L1ME LINE L1 5494 5593 -528 1718 251 24 57 chr11 10368828 10369078 -140414475 + MER119 DNA MER1_type 6 263 -320 2448 51 0 7 chr11 10369078 10369370 -140414183 + AluY SINE Alu 1 290 -21 1718 251 24 57 chr11 10369370 10369716 -140413837 + MER119 DNA MER1_type 263 582 -1 426 261 96 56 chr11 10369914 10369989 -140413564 + L1ME3A LINE L1 3419 3490 -2656 1702 141 19 58 chr11 10369989 10370302 -140413251 + AluJo SINE Alu 1 301 -11 426 261 96 56 chr11 10370302 10370475 -140413078 + L1ME3A LINE L1 3490 3677 -2469 295 262 47 13 chr11 10370534 10370683 -140412870 + L1ME3A LINE L1 3904 4057 -2089 698 278 98 36 chr11 10370741 10371039 -140412514 + L1ME3A LINE L1 4154 4432 -1714 1557 167 71 0 chr11 10371039 10371308 -140412245 - AluJb SINE Alu -24 288 1 698 278 98 36 chr11 10371308 10371592 -140411961 + L1ME3A LINE L1 4432 4772 -1374 1244 143 0 43 chr11 10371593 10371978 -140411575 + AluJb SINE Alu 91 466 0 1330 285 49 18 chr11 10371997 10373117 -140410436 + L1ME3A LINE L1 4795 5954 -216 3990 167 33 13 chr11 10373516 10373780 -140409773 + L1PA16 LINE L1 4395 4652 -1514 1839 167 3 3 chr11 10373780 10374073 -140409480 + AluJo SINE Alu 2 294 -18 3990 167 33 13 chr11 10374073 10375268 -140408285 + L1PA16 LINE L1 4652 5874 -292 349 207 12 0 chr11 10375270 10375352 -140408201 + L1PA16 LINE L1 6082 6164 -2 2280 109 3 3 chr11 10375392 10375705 -140407848 - AluSp SINE Alu 0 313 1 269 302 55 76 chr11 10376165 10376456 -140407097 + ERVL LTR ERVL 306 590 -5174 503 265 168 5 chr11 10376456 10376641 -140406912 + MLT2F LTR ERVL 1 215 -448 4457 145 48 4 chr11 10376642 10377400 -140406153 + L1MB3 LINE L1 5386 6176 -7 1564 232 50 13 chr11 10377426 10377879 -140405674 - L1MC4 LINE L1 -1122 6920 6431 210 191 0 0 chr11 10378003 10378045 -140405508 + GA-rich Low_complexity Low_complexity 3 44 0 319 324 9 0 chr11 10378113 10378224 -140405329 - L1 LINE L1 -1780 4366 4255 620 316 129 2 chr11 10378320 10378716 -140404837 - L1 LINE L1 -2049 4097 3652 405 108 40 0 chr11 10378883 10378957 -140404596 + L1MA8 LINE L1 6211 6287 -4 485 321 38 11 chr11 10379126 10379310 -140404243 - L3 LINE CR1 -6 1571 1383 223 290 39 29 chr11 10379273 10379378 -140404175 + MER5A DNA MER1_type 19 130 -53 * 206 378 0 14 chr11 10379414 10379488 -140404065 - MER5B DNA MER1_type 0 178 106 218 224 0 0 chr11 10379826 10379875 -140403678 - L2 LINE L2 0 3313 3265 319 321 44 0 chr11 10379975 10380112 -140403441 - L2 LINE L2 -182 3090 2948 193 327 40 59 chr11 10380237 10380439 -140403114 - L2 LINE L2 -560 2754 2557 2148 272 80 25 chr11 10380879 10381193 -140402360 - HAL1 LINE L1 -1716 791 496 330 67 0 0 chr11 10381193 10381238 -140402315 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2148 272 80 25 chr11 10381238 10381672 -140401881 - HAL1 LINE L1 -2011 496 2 2968 79 48 33 chr11 10381772 10382119 -140401434 + L1PB1 LINE L1 5420 5777 -374 2257 106 20 0 chr11 10382119 10382420 -140401133 + AluSg1 SINE Alu 1 307 -2 2968 79 48 33 chr11 10382420 10382526 -140401027 + L1PB1 LINE L1 5777 5880 -271 27 0 0 0 chr11 10382863 10382890 -140400663 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr11 10383636 10383660 -140399893 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 386 256 76 40 chr11 10384220 10384497 -140399056 - L1ME4a LINE L1 -122 5999 5713 1035 282 72 52 chr11 10384991 10385505 -140398048 - L1ME3A LINE L1 -278 5892 5369 21 0 0 0 chr11 10385975 10385996 -140397557 + AT_rich Low_complexity Low_complexity 1 21 0 2224 118 0 0 chr11 10386410 10386714 -140396839 - AluY SINE Alu -7 304 1 2490 24 7 3 chr11 10387309 10387599 -140395954 - AluY SINE Alu -6 305 15 980 199 12 0 chr11 10388943 10389114 -140394439 - FAM SINE Alu -2 173 1 1086 252 84 61 chr11 10389143 10389632 -140393921 - L1ME3A LINE L1 -925 5221 4708 2192 105 0 0 chr11 10389632 10389918 -140393635 - AluSg SINE Alu -24 286 1 1086 252 84 61 chr11 10389918 10390163 -140393390 - L1ME3A LINE L1 -1438 4708 4470 2088 146 0 0 chr11 10392138 10392446 -140391107 + AluSx SINE Alu 1 308 -4 1666 161 11 0 chr11 10392924 10393203 -140390350 + AluJo SINE Alu 1 282 -30 24 32 0 0 chr11 10393704 10393735 -140389818 + AT_rich Low_complexity Low_complexity 1 31 0 1539 139 0 8 chr11 10393828 10394073 -140389480 - L1PB4 LINE L1 -2 6154 5912 2217 83 48 0 chr11 10394253 10394543 -140389010 - AluSp SINE Alu -9 304 1 578 248 45 20 chr11 10394543 10394736 -140388817 - L1MD3 LINE L1 -7 7988 7788 385 176 0 65 chr11 10395040 10395148 -140388405 + AluSp/q SINE Alu 196 296 -7 288 180 139 33 chr11 10395143 10395265 -140388288 + Charlie1 DNA MER1_type 2626 2760 -1 * 1903 128 38 85 chr11 10395855 10396253 -140387300 - Tigger7 DNA MER2_type -4 2483 2105 1414 171 75 4 chr11 10396239 10396491 -140387062 - Tigger7 DNA MER2_type -2215 272 3 * 302 283 133 18 chr11 10398274 10398387 -140385166 - MIR SINE MIR -63 145 20 207 100 0 0 chr11 10398531 10398561 -140384992 + (TATG)n Simple_repeat Simple_repeat 4 33 0 570 243 79 26 chr11 10398570 10398837 -140384716 - L1ME4a LINE L1 -196 5925 5645 1327 169 3 112 chr11 10399138 10399469 -140384084 + AluJb SINE Alu 1 295 -7 5048 132 24 40 chr11 10400030 10400430 -140383123 + L1PB3 LINE L1 5083 5488 -666 2021 130 33 0 chr11 10400430 10400730 -140382823 - AluSx SINE Alu 0 312 3 5048 132 24 40 chr11 10400730 10401055 -140382498 + L1PB3 LINE L1 5488 5817 -337 432 0 0 0 chr11 10401055 10401103 -140382450 + (CA)n Simple_repeat Simple_repeat 2 49 0 5048 132 24 40 chr11 10401103 10401470 -140382083 + L1PB3 LINE L1 5817 6154 0 2670 201 0 0 chr11 10401636 10402164 -140381389 - L1P LINE L1 -1358 4788 4261 * 10836 118 20 6 chr11 10402162 10403723 -140379830 + L1PA12 LINE L1 1013 2595 -4986 267 336 27 0 chr11 10403823 10403933 -140379620 + MIR SINE MIR 93 205 -57 580 368 86 25 chr11 10404020 10404498 -140379055 + L3 LINE CR1 864 1370 -207 595 291 99 14 chr11 10404527 10404740 -140378813 - MIR SINE MIR 0 262 32 2199 115 0 13 chr11 10405266 10405571 -140377982 + AluSx SINE Alu 1 301 -11 2150 109 3 31 chr11 10406149 10406469 -140377084 - AluSq SINE Alu 0 313 3 313 302 42 0 chr11 10406929 10407025 -140376528 - L1ME4a LINE L1 -528 5593 5494 360 259 24 0 chr11 10407099 10407184 -140376369 + L2 LINE L2 3227 3313 0 2204 96 0 3 chr11 10407279 10407572 -140375981 + AluY SINE Alu 1 292 -19 234 274 14 0 chr11 10407572 10407645 -140375908 + HAL1 LINE L1 97 170 -2337 270 191 0 0 chr11 10407647 10407689 -140375864 + Alu SINE Alu 1 42 -260 389 70 0 0 chr11 10407790 10407847 -140375706 + Alu SINE Alu 245 301 -1 1036 175 0 0 chr11 10407989 10408160 -140375393 - FAM SINE Alu 0 175 5 2066 140 3 3 chr11 10408243 10408551 -140375002 + AluSg SINE Alu 1 308 -2 242 230 47 61 chr11 10408964 10408985 -140374568 - L1MA10 LINE L1 -10 6324 6304 1703 220 103 16 chr11 10408985 10409481 -140374072 - L1ME1 LINE L1 -20 6146 5608 1978 125 0 0 chr11 10409594 10409874 -140373679 - AluY SINE Alu -31 280 1 226 416 0 0 chr11 10410295 10410396 -140373157 + L2 LINE L2 2595 2695 -619 1969 117 139 115 chr11 10410663 10411159 -140372394 + MER4A LTR ERV1 1 508 -156 4374 148 14 15 chr11 10411160 10411883 -140371670 + MER50 LTR ERV1 1 722 -12 6593 144 43 20 chr11 10411919 10414008 -140369545 + MER50-int LTR ERV1 1 2218 -4987 284 221 0 0 chr11 10414180 10414257 -140369296 + L1MEc LINE L1 2240 2316 -4080 383 175 24 22 chr11 10414267 10414358 -140369195 + Tigger5 DNA MER2_type 4 2323 0 297 221 53 0 chr11 10414381 10414476 -140369077 + L1MEc LINE L1 2331 2430 -3785 504 232 74 71 chr11 10415212 10415509 -140368044 + L1MC5 LINE L1 7638 7935 -26 22 0 0 30 chr11 10415649 10415666 -140367887 + AT_rich Low_complexity Low_complexity 1 18 -14 2092 101 0 10 chr11 10415666 10415964 -140367589 + AluY SINE Alu 1 295 -16 22 0 0 30 chr11 10415964 10415979 -140367574 + AT_rich Low_complexity Low_complexity 18 32 0 23 0 0 0 chr11 10416778 10416801 -140366752 + AT_rich Low_complexity Low_complexity 1 23 0 1058 320 139 25 chr11 10416957 10417567 -140365986 + L3 LINE CR1 895 1574 -3 21 36 0 0 chr11 10417644 10417672 -140365881 + AT_rich Low_complexity Low_complexity 1 28 0 2103 112 7 3 chr11 10417871 10418156 -140365397 + AluSx SINE Alu 1 286 -26 480 18 0 0 chr11 10418156 10418213 -140365340 + (CATA)n Simple_repeat Simple_repeat 2 58 0 386 292 93 62 chr11 10418599 10418952 -140364601 - MLT1J LTR MaLR -43 468 105 2544 44 0 0 chr11 10419703 10419996 -140363557 - AluY SINE Alu -18 293 1 216 328 109 17 chr11 10420482 10420601 -140362952 + MIR3 SINE MIR 9 138 -70 27 29 0 0 chr11 10420691 10420725 -140362828 + AT_rich Low_complexity Low_complexity 1 34 0 2398 75 0 3 chr11 10420804 10421111 -140362442 + AluSg SINE Alu 1 306 -4 415 217 0 0 chr11 10421126 10421218 -140362335 - MER113 DNA MER1_type? -415 106 15 2189 117 0 16 chr11 10421810 10422126 -140361427 - AluSx SINE Alu -1 311 1 365 245 91 7 chr11 10422206 10422349 -140361204 + L1MEc LINE L1 2517 2671 -3544 * 687 159 165 0 chr11 10422347 10422523 -140361030 + L1MB7 LINE L1 5199 5403 -743 3083 163 21 44 chr11 10422544 10422826 -140360727 + L1MB7 LINE L1 5544 5831 -353 2302 69 0 10 chr11 10422826 10423130 -140360423 + AluY SINE Alu 1 301 -10 3083 163 21 44 chr11 10423130 10423373 -140360180 + L1MB7 LINE L1 5831 6078 -106 2174 98 4 0 chr11 10423373 10423648 -140359905 + AluSp SINE Alu 2 277 -36 366 85 0 0 chr11 10423650 10423709 -140359844 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 233 29 29 0 chr11 10423710 10423744 -140359809 + (TA)n Simple_repeat Simple_repeat 1 35 0 3083 163 21 44 chr11 10423744 10423868 -140359685 + L1MB7 LINE L1 6078 6184 0 338 265 143 0 chr11 10423917 10424015 -140359538 + L1ME3A LINE L1 6006 6117 -53 2261 262 173 22 chr11 10424425 10425617 -140357936 + L2 LINE L2 1930 3287 -26 367 358 51 11 chr11 10425753 10425929 -140357624 - L3b LINE CR1 -70 1513 1331 2046 71 4 0 chr11 10425949 10426204 -140357349 - AluY SINE Alu -16 295 40 181 333 72 14 chr11 10426385 10426454 -140357099 + MIR SINE MIR 39 111 -97 281 374 81 17 chr11 10426631 10426805 -140356748 - L3 LINE CR1 -1292 285 101 21 36 0 0 chr11 10426911 10426939 -140356614 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 10426962 10426987 -140356566 + AT_rich Low_complexity Low_complexity 1 25 0 1808 183 3 10 chr11 10427133 10427445 -140356108 + AluJb SINE Alu 1 310 -2 515 291 58 28 chr11 10427457 10427784 -140355769 + L1M4 LINE L1 4589 4925 -1221 693 253 16 31 chr11 10427797 10427991 -140355562 + MIR SINE MIR 25 215 -47 183 42 0 0 chr11 10427991 10428015 -140355538 + (CA)n Simple_repeat Simple_repeat 2 25 0 2250 108 0 7 chr11 10428213 10428519 -140355034 - AluSg SINE Alu -6 304 1 2669 33 0 3 chr11 10429044 10429349 -140354204 - AluY SINE Alu -7 304 1 229 313 52 10 chr11 10430158 10430254 -140353299 + MIR3 SINE MIR 103 202 -6 674 130 0 0 chr11 10431369 10431469 -140352084 + L1PB3 LINE L1 6041 6140 -14 25 83 0 0 chr11 10431472 10431532 -140352021 + AT_rich Low_complexity Low_complexity 1 60 0 247 283 0 0 chr11 10432429 10432489 -140351064 + MIR3 SINE MIR 146 205 -3 578 248 50 0 chr11 10433451 10433592 -140349961 - MIR3 SINE MIR -23 185 38 15125 196 59 12 chr11 10434087 10437919 -140345634 - L1PB1 LINE L1 0 6867 2616 2045 135 0 0 chr11 10437919 10438227 -140345326 + AluSx SINE Alu 1 308 0 15125 196 59 12 chr11 10438227 10440967 -140342586 - L1PB1 LINE L1 -4251 2616 6 1148 163 32 0 chr11 10442078 10442299 -140341254 - L1PA16 LINE L1 -9 6157 5930 2071 76 73 0 chr11 10442677 10442952 -140340601 + AluY SINE Alu 2 296 -15 1665 139 12 111 chr11 10443106 10443262 -140340291 + AluJo SINE Alu 1 108 -204 2279 102 7 0 chr11 10443262 10443556 -140339997 + AluSx SINE Alu 1 296 -16 1665 139 12 111 chr11 10443556 10443731 -140339822 + AluJo SINE Alu 108 299 -13 22 0 0 0 chr11 10444136 10444158 -140339395 + AT_rich Low_complexity Low_complexity 1 22 0 373 198 57 47 chr11 10444255 10444361 -140339192 - MIR SINE MIR -20 242 136 1766 117 0 12 chr11 10444527 10444784 -140338769 - AluJb SINE Alu -14 298 45 589 174 8 25 chr11 10444785 10444906 -140338647 + AluJb SINE Alu 189 307 -5 205 222 32 63 chr11 10445077 10445140 -140338413 - L2 LINE L2 -1 3312 3252 1890 159 0 19 chr11 10446031 10446340 -140337213 - AluJo SINE Alu -9 303 1 1902 144 4 0 chr11 10446740 10447017 -140336536 - AluSq SINE Alu -35 278 1 26 0 0 0 chr11 10447022 10447048 -140336505 + AT_rich Low_complexity Low_complexity 1 26 0 3193 178 86 8 chr11 10447057 10447794 -140335759 - Charlie1 DNA MER1_type -159 2602 1809 807 211 26 0 chr11 10447810 10447966 -140335587 - Charlie1 DNA MER1_type -1142 1619 1460 278 222 16 0 chr11 10447963 10448026 -140335527 - Charlie1 DNA MER1_type -2640 121 58 * 603 258 0 8 chr11 10448127 10448259 -140335294 - MER8 DNA MER2_type -103 136 6 234 258 15 15 chr11 10448787 10448853 -140334700 - MIR SINE MIR -1 261 196 5095 240 34 20 chr11 10448857 10450125 -140333428 - L1M4 LINE L1 -1287 4859 3565 1431 194 81 6 chr11 10450125 10450445 -140333108 + MER2 DNA MER2_type 1 344 0 5095 240 34 20 chr11 10450445 10450700 -140332853 - L1M4 LINE L1 -2581 3565 3315 2834 86 0 18 chr11 10450704 10450875 -140332678 + LTR66 LTR ERVL 1 174 -436 2200 107 7 0 chr11 10450875 10451175 -140332378 + AluSx SINE Alu 1 302 -10 2834 86 0 18 chr11 10451175 10451386 -140332167 + LTR66 LTR ERVL 174 376 -234 607 189 30 30 chr11 10451386 10451518 -140332035 - LTR10B LTR ERV1 0 547 416 244 253 123 12 chr11 10451588 10451731 -140331822 - LTR10B LTR ERV1 -297 250 1 * 253 0 0 57 chr11 10451731 10451759 -140331794 + LTR66 LTR ERVL 375 400 -210 1588 81 88 59 chr11 10451760 10452032 -140331521 + LTR66 LTR ERVL 331 610 0 1890 225 33 18 chr11 10452032 10452468 -140331085 - L1M4 LINE L1 -2828 3318 2869 1706 197 7 3 chr11 10452468 10452763 -140330790 + AluJo SINE Alu 1 296 -16 1890 225 33 18 chr11 10452763 10452926 -140330627 - L1M4 LINE L1 -3277 2869 2710 2268 261 69 65 chr11 10455406 10456675 -140326878 - L1MC4 LINE L1 0 8042 6768 29 60 0 0 chr11 10457439 10457489 -140326064 + AT_rich Low_complexity Low_complexity 1 50 0 227 176 28 190 chr11 10457959 10458101 -140325452 - MIR SINE MIR -30 232 114 458 279 46 9 chr11 10459610 10459777 -140323776 + MIR3 SINE MIR 3 180 -28 6746 69 5 2 chr11 10459917 10461068 -140322485 - L1PA6 LINE L1 0 6154 5001 1804 78 0 41 chr11 10461068 10461313 -140322240 + AluY SINE Alu 1 235 -76 243 0 0 0 chr11 10462651 10462678 -140320875 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr11 10462842 10462865 -140320688 + AT_rich Low_complexity Low_complexity 1 23 0 1113 298 32 34 chr11 10463506 10463973 -140319580 - L2 LINE L2 0 3313 2848 274 319 0 0 chr11 10463973 10464045 -140319508 - L2 LINE L2 -691 2623 2552 465 118 24 0 chr11 10464183 10464268 -140319285 - L1MB4 LINE L1 0 6180 6094 1600 194 11 0 chr11 10464302 10464586 -140318967 + AluJo SINE Alu 1 287 -25 29 0 0 0 chr11 10465043 10465072 -140318481 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 10467617 10467638 -140315915 + AT_rich Low_complexity Low_complexity 1 21 0 1550 184 0 16 chr11 10468031 10468287 -140315266 + AluJo SINE Alu 4 255 -57 1535 123 54 0 chr11 10469017 10469278 -140314275 + L1MA8 LINE L1 6013 6287 -4 1564 192 3 27 chr11 10469496 10469793 -140313760 - AluJo SINE Alu -22 290 1 256 268 18 0 chr11 10470078 10470134 -140313419 + MER20B DNA MER1_type 84 140 -643 1989 138 0 3 chr11 10470343 10470647 -140312906 + AluSx SINE Alu 3 305 -7 389 353 40 20 chr11 10471018 10471270 -140312283 + L1MEd LINE L1 594 850 -5269 549 309 57 45 chr11 10471292 10471685 -140311868 + L1M3d LINE L1 1 1552 -5475 1344 217 77 68 chr11 10471813 10472357 -140311196 + L1ME2 LINE L1 5500 6102 -62 2575 191 18 0 chr11 10472366 10472862 -140310691 + L1MB7 LINE L1 5652 6156 -28 861 222 199 73 chr11 10472874 10473492 -140310061 + L1MC5 LINE L1 6837 7532 -429 297 211 119 108 chr11 10473600 10473785 -140309768 + L1ME3A LINE L1 5977 6163 -7 252 252 0 87 chr11 10473862 10473965 -140309588 - MLT1J LTR MaLR -58 453 360 232 263 100 25 chr11 10474033 10474113 -140309440 + L2 LINE L2 3186 3271 -1 21 0 0 0 chr11 10474212 10474233 -140309320 + AT_rich Low_complexity Low_complexity 1 21 0 4277 152 10 15 chr11 10475547 10476262 -140307291 - MER50 LTR ERV1 -23 711 1 416 198 0 85 chr11 10476607 10476713 -140306840 + MER34B LTR ERV1 467 583 -2 344 347 41 0 chr11 10477062 10477183 -140306370 - L2 LINE L2 -9 3263 3138 23 0 0 0 chr11 10477416 10477439 -140306114 + AT_rich Low_complexity Low_complexity 1 23 0 223 389 14 0 chr11 10477896 10477968 -140305585 + L2 LINE L2 3101 3173 -99 310 216 227 0 chr11 10478714 10478802 -140304751 + L2 LINE L2 3204 3311 -2 2341 71 0 0 chr11 10479457 10479764 -140303789 + AluY SINE Alu 2 308 0 1763 106 102 0 chr11 10480165 10480430 -140303123 + AluSx SINE Alu 1 292 -20 578 146 50 19 chr11 10480751 10480914 -140302639 + MLT1D LTR MaLR 236 505 0 289 262 61 55 chr11 10480936 10481077 -140302476 - L1MD3 LINE L1 -11 7984 7839 1840 145 0 28 chr11 10481077 10481394 -140302159 - AluJb SINE Alu 0 309 1 289 262 61 55 chr11 10481394 10481415 -140302138 - L1MD3 LINE L1 -156 7839 7820 2052 249 90 84 chr11 10481415 10482335 -140301218 + L1MC4 LINE L1 6084 7093 -808 189 0 0 0 chr11 10482335 10482356 -140301197 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 2052 249 90 84 chr11 10482356 10482666 -140300887 + L1MC4 LINE L1 7093 7400 -501 406 301 65 56 chr11 10482642 10482948 -140300605 + L1M4 LINE L1 22 624 -6231 * 1552 277 65 52 chr11 10483144 10483800 -140299753 + L1M4 LINE L1 1004 1650 -5309 1724 176 13 10 chr11 10483800 10484102 -140299451 + AluJo SINE Alu 1 303 -9 1552 277 65 52 chr11 10484102 10484723 -140298830 + L1M4 LINE L1 1650 2312 -4647 1741 182 30 3 chr11 10484723 10485025 -140298528 + AluJb SINE Alu 1 310 -2 1552 277 65 52 chr11 10485025 10485116 -140298437 + L1M4 LINE L1 2312 2400 -4559 7168 95 20 2 chr11 10485173 10486979 -140296574 + L1PA7 LINE L1 4319 6149 -5 7118 194 17 18 chr11 10487172 10488490 -140295063 - MER50-int LTR ERV1 -3843 3362 2168 9076 108 35 3 chr11 10588501 10590019 -140193534 + MER57-int LTR ERV1 5546 7148 -389 639 123 44 0 chr11 10590019 10590133 -140193420 + LTR54B LTR ERV1 3 121 -377 198 0 0 0 chr11 10590886 10590908 -140192645 + (TA)n Simple_repeat Simple_repeat 2 23 0 441 368 133 0 chr11 10590994 10591369 -140192184 + LTR16A LTR ERVL 18 442 -8 195 235 0 0 chr11 10592057 10592091 -140191462 + L2 LINE L2 3008 3041 -272 246 250 38 12 chr11 10592238 10592318 -140191235 - MLT1I LTR MaLR -228 181 100 974 105 42 0 chr11 10592591 10592734 -140190819 + AluSp SINE Alu 1 149 -164 7399 157 53 33 chr11 10592837 10593543 -140190010 - MER51-int LTR ERV1 -2460 5356 4665 2318 85 0 3 chr11 10593543 10593848 -140189705 - AluY SINE Alu -7 304 1 7399 157 53 33 chr11 10593848 10594714 -140188839 - MER51-int LTR ERV1 -3151 4665 3753 1337 150 19 0 chr11 10594714 10594927 -140188626 - L1M1 LINE L1 -7333 232 16 2043 115 0 50 chr11 10594941 10595264 -140188289 - AluSx SINE Alu -5 307 1 690 245 85 71 chr11 10595289 10595575 -140187978 - L1M4 LINE L1 -2281 3865 3570 1422 193 27 48 chr11 10595575 10595870 -140187683 - AluJo SINE Alu -23 289 1 690 245 85 71 chr11 10595870 10596008 -140187545 - L1M4 LINE L1 -2576 3570 3435 2205 117 7 0 chr11 10596082 10596391 -140187162 + AluSq SINE Alu 3 313 0 3841 227 26 62 chr11 10596393 10597296 -140186257 - L1MA10 LINE L1 -44 7709 6775 718 236 6 13 chr11 10597296 10597453 -140186100 - FAM SINE Alu -19 156 1 3841 227 26 62 chr11 10597453 10597562 -140185991 - L1MA10 LINE L1 -978 6775 6748 1793 168 7 0 chr11 10597562 10597860 -140185693 - AluJb SINE Alu -12 300 1 3841 227 26 62 chr11 10597860 10598045 -140185508 - L1MA10 LINE L1 -1005 6748 6558 2507 196 35 2 chr11 10598041 10598561 -140184992 + L1 LINE L1 4595 5131 -1015 * 5563 239 59 9 chr11 10598561 10600531 -140183022 - L1MA10 LINE L1 -2289 5276 3210 303 321 63 79 chr11 10600576 10600766 -140182787 - L1MA10 LINE L1 -5454 2112 1926 239 252 58 19 chr11 10600859 10600962 -140182591 - L1MA10 LINE L1 -7432 133 27 700 249 143 19 chr11 10600977 10601345 -140182208 - L1M4 LINE L1 -2689 3457 3030 2014 128 7 10 chr11 10601345 10601642 -140181911 - AluSx SINE Alu -16 296 1 700 249 143 19 chr11 10601642 10601691 -140181862 - L1M4 LINE L1 -3116 3030 2988 594 220 0 0 chr11 10601791 10601911 -140181642 + AluJb SINE Alu 182 301 0 1335 206 7 39 chr11 10602001 10602282 -140181271 + AluJo SINE Alu 11 282 -30 2231 87 0 20 chr11 10602282 10602582 -140180971 - AluSc SINE Alu -13 296 3 1837 141 0 0 chr11 10602921 10603183 -140180370 + AluSx SINE Alu 35 296 -16 579 241 15 87 chr11 10603422 10603687 -140179866 - L1ME1 LINE L1 -5 6161 5916 612 259 2 1 chr11 10603716 10603864 -140179689 - L1ME1 LINE L1 -370 5796 5651 400 204 183 48 chr11 10603914 10603948 -140179605 + L1M4 LINE L1 2271 2299 -3847 1769 184 0 7 chr11 10603948 10604253 -140179300 + AluJb SINE Alu 1 303 -9 400 204 183 48 chr11 10604253 10604448 -140179105 + L1M4 LINE L1 2299 2531 -3615 2165 132 0 0 chr11 10604453 10604756 -140178797 + AluSx SINE Alu 1 303 -9 296 252 9 0 chr11 10604861 10604968 -140178585 + (TATATG)n Simple_repeat Simple_repeat 1 108 0 775 279 37 0 chr11 10604969 10605291 -140178262 + L1M4 LINE L1 2645 2978 -3168 954 35 0 0 chr11 10606740 10606853 -140176700 - L1P LINE L1 -6033 113 1 12167 156 33 19 chr11 10606858 10607032 -140176521 + L1MA3 LINE L1 2746 2916 -3389 2086 130 0 3 chr11 10607032 10607333 -140176220 + AluSx SINE Alu 1 300 -12 12167 156 33 19 chr11 10607333 10607347 -140176206 + L1MA3 LINE L1 2916 2928 -3377 2238 89 3 3 chr11 10607347 10607640 -140175913 + AluSx SINE Alu 1 293 -19 12167 156 33 19 chr11 10607640 10610955 -140172598 + L1MA3 LINE L1 2928 6305 0 605 260 40 35 chr11 10611741 10611941 -140171612 - L2 LINE L2 -4 3309 3109 2197 122 0 0 chr11 10611966 10612269 -140171284 - AluSx SINE Alu -9 303 1 231 36 0 0 chr11 10612408 10612436 -140171117 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1085 199 5 23 chr11 10612438 10612654 -140170899 - AluJb SINE Alu -31 281 70 252 0 0 0 chr11 10613017 10613045 -140170508 + (TG)n Simple_repeat Simple_repeat 1 28 0 1909 154 4 0 chr11 10613046 10613326 -140170227 - AluSx SINE Alu -31 281 1 219 358 0 81 chr11 10613706 10613829 -140169724 - L3 LINE CR1 -7 1570 1458 382 241 28 46 chr11 10613848 10613956 -140169597 - L2 LINE L2 -4 3309 3204 335 319 183 0 chr11 10615649 10615840 -140167713 + L3 LINE CR1 766 991 -586 503 273 36 7 chr11 10616081 10616220 -140167333 + MIR SINE MIR 7 149 -113 2152 256 109 24 chr11 10616543 10617433 -140166120 + L1M4 LINE L1 2654 3467 -2679 252 0 0 0 chr11 10617433 10617461 -140166092 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2093 91 29 4 chr11 10617464 10617739 -140165814 - AluSx SINE Alu -30 282 1 2152 256 109 24 chr11 10617739 10617811 -140165742 + L1M4 LINE L1 3468 3702 -2444 2900 234 36 9 chr11 10617817 10618612 -140164941 + L1M4 LINE L1 3904 4720 -1426 619 244 137 60 chr11 10618664 10618913 -140164640 - MER21B LTR ERV1 -57 806 529 705 243 153 9 chr11 10618953 10619163 -140164390 - MER21B LTR ERV1 -553 310 132 2199 127 30 43 chr11 10619163 10619532 -140164021 + THE1B LTR MaLR 1 364 0 11691 94 4 1 chr11 10619533 10621107 -140162446 + THE1B-int LTR MaLR 2 1580 0 2378 116 30 25 chr11 10621107 10621469 -140162084 + THE1B LTR MaLR 1 364 0 705 243 153 9 chr11 10621469 10621493 -140162060 - MER21B LTR ERV1 -730 133 50 306 276 13 0 chr11 10621497 10621573 -140161980 - MER21B LTR ERV1 -768 95 19 4330 118 15 126 chr11 10621594 10623145 -140160408 + pTR5 LTR ERV1 743 2606 0 360 240 13 0 chr11 10623150 10623225 -140160328 - MER21B LTR ERV1 -773 90 15 956 221 49 49 chr11 10623248 10623597 -140159956 + L1M4 LINE L1 4796 5144 -1002 251 360 54 27 chr11 10624090 10624237 -140159316 - MIR3 SINE MIR -57 151 1 6259 104 77 14 chr11 10624586 10625724 -140157829 + L1M1 LINE L1 2337 3546 -4019 1223 211 39 4 chr11 10625729 10626009 -140157544 + L1M1 LINE L1 3872 4161 -3404 300 62 31 31 chr11 10626018 10626083 -140157470 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 39938 35 21 2 chr11 10626086 10632015 -140151538 - L1PA3 LINE L1 -4 6151 103 254 174 0 0 chr11 10632115 10632161 -140151392 + Alu SINE Alu 250 295 -7 730 230 97 18 chr11 10632173 10632399 -140151154 - L1ME LINE L1 -640 5526 5283 1876 140 9 43 chr11 10632435 10632447 -140151106 - AluJo SINE Alu 0 312 301 204 40 0 0 chr11 10632447 10632472 -140151081 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 1876 140 9 43 chr11 10632472 10632648 -140150905 - AluJo SINE Alu -11 301 137 2353 59 45 0 chr11 10632648 10632934 -140150619 - AluY SINE Alu -12 299 1 1876 140 9 43 chr11 10632934 10633066 -140150487 - AluJo SINE Alu -175 137 2 23 0 0 0 chr11 10633223 10633246 -140150307 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 10633547 10633592 -140149961 + AT_rich Low_complexity Low_complexity 1 45 0 502 261 151 23 chr11 10633956 10634174 -140149379 - MIR SINE MIR 0 262 17 1651 191 7 17 chr11 10634960 10635259 -140148294 + AluJo SINE Alu 1 296 -16 231 36 0 0 chr11 10635259 10635287 -140148266 + (TG)n Simple_repeat Simple_repeat 2 29 0 268 279 38 0 chr11 10635294 10635373 -140148180 - MER103 DNA DNA -47 119 38 1349 150 154 8 chr11 10635377 10635644 -140147909 - AluSg1 SINE Alu -3 306 1 1545 188 32 29 chr11 10635668 10635977 -140147576 - AluJb SINE Alu -2 310 1 488 295 26 3 chr11 10636151 10636351 -140147202 + MIR SINE MIR 1 260 -2 224 309 93 21 chr11 10637502 10637599 -140145954 + MIR SINE MIR 36 139 -69 4554 153 32 13 chr11 10637982 10638420 -140145133 - L1MA8 LINE L1 0 6291 5863 2031 130 27 10 chr11 10638420 10638719 -140144834 - AluSx SINE Alu -4 308 5 4554 153 32 13 chr11 10638719 10638945 -140144608 - L1MA8 LINE L1 -428 5863 5643 1849 131 44 34 chr11 10638945 10639243 -140144310 - AluJb SINE Alu -8 304 4 4554 153 32 13 chr11 10639243 10639483 -140144070 - L1MA8 LINE L1 -648 5643 5369 389 206 26 153 chr11 10640052 10640241 -140143312 - HAL1 LINE L1 0 2507 2343 2612 108 9 35 chr11 10640287 10640499 -140143054 - MER57B LTR ERV1 -10 424 227 2503 60 0 22 chr11 10640499 10640816 -140142737 - AluY SINE Alu -1 310 1 2612 108 9 35 chr11 10640816 10641038 -140142515 - MER57B LTR ERV1 -207 227 1 593 90 0 22 chr11 10641162 10641251 -140142302 + AluJb SINE Alu 213 299 -13 369 309 72 37 chr11 10641255 10641604 -140141949 + L1PA2 LINE L1 5465 5825 -330 * 2434 219 136 17 chr11 10641294 10642064 -140141489 + L1MD2 LINE L1 5500 7992 -3 2264 99 0 0 chr11 10642103 10642396 -140141157 - AluY SINE Alu -17 294 2 1309 194 55 22 chr11 10642439 10642617 -140140936 - AluJo SINE Alu -6 306 114 189 0 0 0 chr11 10642617 10642638 -140140915 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1309 194 55 22 chr11 10642638 10642732 -140140821 - AluJo SINE Alu -198 114 25 795 231 9 0 chr11 10642740 10642956 -140140597 + Charlie2a DNA MER1_type 1755 1972 -890 2260 103 13 0 chr11 10643075 10643376 -140140177 + AluSx SINE Alu 1 305 -7 261 308 28 75 chr11 10644174 10644281 -140139272 - L2 LINE L2 -49 3223 3122 417 227 177 14 chr11 10644435 10644576 -140138977 - MIR SINE MIR -8 254 91 217 216 52 113 chr11 10644702 10644799 -140138754 - L2 LINE L2 -46 3267 3177 2692 198 12 14 chr11 10645253 10645844 -140137709 - L1MB3 LINE L1 0 6183 5594 22 35 0 0 chr11 10645847 10645876 -140137677 + AT_rich Low_complexity Low_complexity 1 29 0 347 301 135 31 chr11 10646091 10646417 -140137136 + L1M4 LINE L1 3127 3486 -2660 2233 188 40 10 chr11 10646429 10646930 -140136623 + L1MD3 LINE L1 7455 7970 -25 226 178 0 0 chr11 10647154 10647199 -140136354 + L1M4 LINE L1 3718 3762 -2384 2455 72 0 10 chr11 10647350 10647657 -140135896 - AluSq SINE Alu -9 304 1 21 36 0 0 chr11 10647691 10647719 -140135834 + AT_rich Low_complexity Low_complexity 1 28 0 934 194 24 65 chr11 10647826 10648166 -140135387 - LTR37B LTR ERV1 -11 457 132 330 284 140 53 chr11 10648269 10648533 -140135020 + L1MC/D LINE L1 5273 5559 -2249 344 197 0 0 chr11 10648820 10648881 -140134672 - MER31B LTR ERV1 -89 377 317 26 50 0 0 chr11 10648935 10648975 -140134578 + AT_rich Low_complexity Low_complexity 1 40 0 471 223 0 0 chr11 10649388 10649491 -140134062 + MER3 DNA MER1_type 1 103 -106 457 175 10 52 chr11 10650081 10650178 -140133375 + MER21B LTR ERV1 1 93 -770 2600 248 63 11 chr11 10650197 10650942 -140132611 + MER21B LTR ERV1 19 802 -61 1938 98 4 4 chr11 10653222 10653478 -140130075 - AluSp SINE Alu -18 295 40 382 230 30 30 chr11 10653618 10653753 -140129800 + L1M4 LINE L1 4500 4634 -1512 2412 69 0 7 chr11 10653758 10654064 -140129489 - AluY SINE Alu -7 304 1 1788 170 3 3 chr11 10654251 10654556 -140128997 + AluJb SINE Alu 1 305 0 1773 275 69 5 chr11 10655020 10655573 -140127980 - MLT1G LTR MaLR -2 588 1 5837 147 15 5 chr11 10655820 10657692 -140125861 + L1PA13 LINE L1 4191 6072 -91 1005 142 0 35 chr11 10657807 10657976 -140125577 + FRAM SINE Alu 14 176 0 41827 39 6 1 chr11 10658066 10664189 -140119364 + L1PA4 LINE L1 2 6152 -3 358 314 100 52 chr11 10664397 10664735 -140118818 - L1MC/D LINE L1 -331 5859 5510 823 312 152 21 chr11 10665553 10666231 -140117322 - L2 LINE L2 -5 3308 2535 300 229 0 0 chr11 10666231 10666292 -140117261 + Tigger2 DNA MER2_type 2 62 -2656 274 321 38 31 chr11 10666422 10666581 -140116972 + MIR SINE MIR 97 256 -6 241 202 121 40 chr11 10666872 10666971 -140116582 - MLT1J2 LTR MaLR -305 145 39 544 272 156 11 chr11 10668248 10668627 -140114926 - MLT1J2 LTR MaLR -11 435 1 28 0 0 0 chr11 10669020 10669048 -140114505 + AT_rich Low_complexity Low_complexity 1 28 0 2407 87 3 0 chr11 10670791 10671103 -140112450 + AluSp SINE Alu 1 313 0 1294 258 65 4 chr11 10671794 10672283 -140111270 + L1M4 LINE L1 2714 3232 -2914 1177 219 43 41 chr11 10672310 10672702 -140110851 - L1MC/D LINE L1 -1109 5106 4714 279 277 57 14 chr11 10672705 10672846 -140110707 - L1MC/D LINE L1 -1787 4428 4282 260 287 47 15 chr11 10672848 10673049 -140110504 - L1ME LINE L1 -5040 1165 956 386 329 36 15 chr11 10673091 10673228 -140110325 - L1ME LINE L1 -5474 922 783 2179 175 103 119 chr11 10674398 10675161 -140108392 + MER52A LTR ERV1 1 853 -688 5060 173 7 1 chr11 10675161 10676112 -140107441 + L1P LINE L1 4359 5315 -831 1754 98 0 4 chr11 10676116 10676351 -140107202 + Charlie3 DNA MER1_type 2469 2702 -8 4208 205 166 15 chr11 10676351 10677622 -140105931 + L1 LINE L1 2621 4166 -1980 5120 75 20 20 chr11 10677622 10678145 -140105408 + LTR8 LTR ERV1 1 526 -165 2197 82 43 0 chr11 10678145 10678425 -140105128 + AluY SINE Alu 1 292 -19 5120 75 20 20 chr11 10678425 10678592 -140104961 + LTR8 LTR ERV1 525 691 0 4208 205 166 15 chr11 10678592 10678743 -140104810 + L1 LINE L1 4166 4293 -1853 288 250 0 0 chr11 10678965 10679025 -140104528 + GA-rich Low_complexity Low_complexity 3 62 0 436 174 46 28 chr11 10679034 10679143 -140104410 + L1ME4a LINE L1 5962 6072 -49 281 331 45 6 chr11 10679263 10679420 -140104133 + L2 LINE L2 2886 3048 -224 2139 117 7 0 chr11 10679442 10679732 -140103821 + AluSx SINE Alu 14 305 -7 369 282 33 98 chr11 10680029 10680227 -140103326 + MLT1J LTR MaLR 1 221 -289 1258 179 68 64 chr11 10680232 10680528 -140103025 + AluJo SINE Alu 5 301 -11 228 313 17 108 chr11 10680636 10680812 -140102741 + MLT1J LTR MaLR 342 501 -10 21 0 0 0 chr11 10681110 10681131 -140102422 + AT_rich Low_complexity Low_complexity 1 21 0 306 224 0 0 chr11 10682042 10682100 -140101453 - MIR SINE MIR -24 238 181 2402 90 0 3 chr11 10682320 10682621 -140100932 - AluSq SINE Alu -13 300 1 742 176 55 48 chr11 10682625 10682790 -140100763 - FRAM SINE Alu 0 166 1 2295 94 0 13 chr11 10682942 10683251 -140100302 - AluSq SINE Alu -8 305 1 1268 250 89 39 chr11 10683775 10684215 -140099338 - MLT1C LTR MaLR -5 462 1 622 137 21 0 chr11 10684482 10684604 -140098949 - FLAM_C SINE Alu 0 144 21 499 70 0 0 chr11 10684605 10684676 -140098877 - Alu SINE Alu -8 304 234 749 168 0 0 chr11 10684685 10684810 -140098743 - FLAM_C SINE Alu -18 125 1 24 0 0 0 chr11 10686121 10686145 -140097408 + AT_rich Low_complexity Low_complexity 1 24 0 2326 91 0 0 chr11 10686984 10687280 -140096273 - AluSx SINE Alu -5 307 12 303 28 0 0 chr11 10688645 10688681 -140094872 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2123 107 4 0 chr11 10688686 10688966 -140094587 - AluSx SINE Alu -30 282 2 1429 174 97 0 chr11 10688969 10689251 -140094302 - AluJb SINE Alu 0 307 1 23 33 0 0 chr11 10689254 10689284 -140094269 + AT_rich Low_complexity Low_complexity 1 30 0 293 244 24 24 chr11 10689496 10689578 -140093975 - L1M4 LINE L1 -688 5496 5415 2456 62 3 10 chr11 10689631 10689940 -140093613 - AluY SINE Alu -1 310 4 2362 143 33 21 chr11 10690047 10690475 -140093078 + Tigger2a DNA MER2_type 1 433 -1 29 78 0 0 chr11 10690498 10690562 -140092991 + AT_rich Low_complexity Low_complexity 1 64 0 225 279 0 0 chr11 10690571 10690632 -140092921 - L1P1 LINE L1 -397 5758 5698 850 227 0 0 chr11 10690729 10690883 -140092670 + FRAM SINE Alu 1 154 -12 891 231 40 27 chr11 10690883 10691100 -140092453 + MIR SINE MIR 15 236 -26 303 332 48 48 chr11 10691268 10691518 -140092035 + MLT1K LTR MaLR 230 479 -109 377 276 10 0 chr11 10691521 10691619 -140091934 - L1ME LINE L1 -511 5610 5512 182 351 152 12 chr11 10693112 10693283 -140090270 + L2 LINE L2 2426 2620 -694 369 259 114 11 chr11 10693290 10693519 -140090034 - MLT1J LTR MaLR -4 507 211 321 47 0 0 chr11 10693519 10693562 -140089991 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 1930 130 7 18 chr11 10693562 10693846 -140089707 - AluSx SINE Alu -29 283 3 225 94 0 0 chr11 10693950 10693982 -140089571 + (CAT)n Simple_repeat Simple_repeat 2 33 0 443 256 55 91 chr11 10694383 10694582 -140088971 + MIR SINE MIR 7 198 -64 1580 149 0 102 chr11 10694636 10694958 -140088595 + AluJb SINE Alu 2 290 -22 6505 69 8 3 chr11 10695200 10696055 -140087498 + L1PA7 LINE L1 5285 6143 -11 28 29 0 0 chr11 10696055 10696090 -140087463 + AT_rich Low_complexity Low_complexity 1 35 0 275 333 75 0 chr11 10696090 10696183 -140087370 + L2 LINE L2 3169 3268 -4 23 0 0 0 chr11 10697642 10697665 -140085888 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 10698006 10698029 -140085524 + AT_rich Low_complexity Low_complexity 1 23 0 2187 204 30 22 chr11 10698651 10699150 -140084403 - L1ME2 LINE L1 -146 6018 5516 3917 166 51 10 chr11 10700011 10700712 -140082841 - MER44D DNA MER2_type -3 602 1 555 146 0 10 chr11 10701248 10701351 -140082202 + L1MB2 LINE L1 5394 5495 -676 1018 116 0 7 chr11 10701354 10701500 -140082053 + AluSq/x SINE Alu 1 145 -167 2366 84 3 6 chr11 10701500 10701811 -140081742 + AluSg SINE Alu 1 310 0 3350 174 34 25 chr11 10701813 10702487 -140081066 + L1MB2 LINE L1 5491 6170 -1 408 276 39 31 chr11 10702490 10702617 -140080936 - MER5B DNA MER1_type -50 128 1 181 87 22 43 chr11 10703470 10703516 -140080037 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 10703831 10703874 -140079679 + AT_rich Low_complexity Low_complexity 1 43 0 2305 106 0 0 chr11 10704958 10705261 -140078292 - AluSx SINE Alu -9 303 1 227 371 24 67 chr11 10705703 10705913 -140077640 - L2 LINE L2 -420 2894 2694 2485 59 0 10 chr11 10706228 10706535 -140077018 - AluY SINE Alu -7 304 1 238 254 48 0 chr11 10706621 10706684 -140076869 - HsTC2 DNA Tc2 -1816 82 17 269 259 73 88 chr11 10707399 10707673 -140075880 + L1MEd LINE L1 569 838 -5281 453 276 32 40 chr11 10707897 10708147 -140075406 + L1MEd LINE L1 1010 1257 -4862 815 230 55 32 chr11 10708171 10708388 -140075165 - MIR SINE MIR 0 262 41 372 375 7 28 chr11 10708756 10708900 -140074653 + L2 LINE L2 3132 3272 0 28 0 0 0 chr11 10709013 10709041 -140074512 + AT_rich Low_complexity Low_complexity 1 28 0 1894 164 0 0 chr11 10709127 10709432 -140074121 + AluJo SINE Alu 1 305 -7 2416 122 8 19 chr11 10709834 10710202 -140073351 - THE1B LTR MaLR 0 364 1 2180 117 0 3 chr11 10710527 10710827 -140072726 - AluSx SINE Alu -13 299 1 23 33 0 0 chr11 10711214 10711244 -140072309 + AT_rich Low_complexity Low_complexity 1 30 0 2793 13 0 0 chr11 10713597 10713904 -140069649 + AluY SINE Alu 1 307 -4 2558 230 56 42 chr11 10714339 10714516 -140069037 - L1ME1 LINE L1 -47 6119 5946 1436 226 81 25 chr11 10714516 10714958 -140068595 + MLT1C LTR MaLR 1 467 0 2558 230 56 42 chr11 10714958 10715771 -140067782 - L1ME1 LINE L1 -220 5946 5114 2037 104 3 16 chr11 10715771 10716078 -140067475 - AluSx SINE Alu -9 303 1 2558 230 56 42 chr11 10716078 10716153 -140067400 - L1ME1 LINE L1 -1052 5114 5042 333 217 41 152 chr11 10716180 10716220 -140067333 - L1ME1 LINE L1 -10 6156 6113 1032 144 0 0 chr11 10716220 10716380 -140067173 + L1PA16 LINE L1 5988 6147 -19 333 217 41 152 chr11 10716380 10716629 -140066924 - L1ME1 LINE L1 -53 6113 5899 302 326 39 54 chr11 10716688 10716817 -140066736 - LTR67 LTR ERVL -386 171 45 964 258 32 0 chr11 10717272 10717520 -140066033 + L1M4 LINE L1 3584 3839 -2307 443 156 0 0 chr11 10717581 10717658 -140065895 + L1M4b LINE L1 95 171 -6688 2621 182 53 0 chr11 10717659 10718131 -140065422 + L1M4b LINE L1 595 1091 -5868 586 259 35 6 chr11 10718133 10718307 -140065246 + L1 LINE L1 2685 2863 -3283 1506 197 3 23 chr11 10718318 10718623 -140064930 - AluJo SINE Alu -13 299 1 10133 108 29 25 chr11 10718630 10720384 -140063169 - HUERS-P1 LTR ERV1 -1327 5271 3060 9505 101 13 67 chr11 10720371 10720729 -140062824 - HUERS-P1 LTR ERV1 -4659 1604 1228 * 297 0 0 0 chr11 10720729 10720762 -140062791 + (CA)n Simple_repeat Simple_repeat 2 34 0 9505 101 13 67 chr11 10720762 10722099 -140061454 - HUERS-P1 LTR ERV1 -5035 1228 1 422 162 0 0 chr11 10722099 10722167 -140061386 - LTR8 LTR ERV1 0 691 624 616 125 0 0 chr11 10722269 10722365 -140061188 + Tigger2 DNA MER2_type 649 744 -1974 1010 156 147 0 chr11 10722430 10722501 -140061052 + Tigger2 DNA MER2_type 2462 2521 -197 450 0 0 0 chr11 10722501 10722551 -140061002 + (TA)n Simple_repeat Simple_repeat 1 50 0 1010 156 147 0 chr11 10722551 10722703 -140060850 + Tigger2 DNA MER2_type 2521 2718 0 24 32 0 0 chr11 10722983 10723014 -140060539 + AT_rich Low_complexity Low_complexity 1 31 0 850 85 78 0 chr11 10723069 10723198 -140060355 - MER85 DNA T2_type 0 139 1 2754 248 42 45 chr11 10723327 10724358 -140059195 - L1ME LINE L1 -5041 1029 2 2175 115 20 7 chr11 10724533 10724829 -140058724 + AluSx SINE Alu 1 300 -12 388 307 67 105 chr11 10724829 10725543 -140058010 - L2 LINE L2 -107 3165 2456 2458 109 3 35 chr11 10725546 10725921 -140057632 + THE1B LTR MaLR 2 364 0 10527 98 32 38 chr11 10725921 10727511 -140056042 + THE1B-int LTR MaLR 1 1580 0 2400 98 0 70 chr11 10727514 10727751 -140055802 + THE1B LTR MaLR 4 205 -159 2075 121 10 14 chr11 10727751 10728048 -140055505 + AluSx SINE Alu 1 296 -16 2400 98 0 70 chr11 10728048 10728198 -140055355 + THE1B LTR MaLR 205 364 0 244 287 57 25 chr11 10728710 10728832 -140054721 - HAL1b LINE L1 -438 910 785 238 305 0 0 chr11 10728885 10728944 -140054609 - HAL1b LINE L1 -447 901 843 2185 105 0 0 chr11 10729078 10729364 -140054189 - AluSx SINE Alu -26 286 1 296 269 93 83 chr11 10729495 10729688 -140053865 + L3 LINE CR1 1219 1413 -164 322 258 206 7 chr11 10730103 10730258 -140053295 - L2 LINE L2 -542 2772 2587 807 129 0 0 chr11 10730312 10730428 -140053125 - AluJb SINE Alu -12 300 185 2293 97 0 0 chr11 10731302 10731611 -140051942 - AluY SINE Alu -2 309 1 1097 162 65 51 chr11 10731647 10731863 -140051690 + MER20 DNA MER1_type 1 219 0 466 347 50 8 chr11 10732279 10732636 -140050917 + ERVL LTR ERVL 869 1240 -4524 2340 86 3 0 chr11 10732891 10733183 -140050370 - AluSc SINE Alu -16 293 1 1750 321 83 48 chr11 10733401 10734658 -140048895 + ERVL LTR ERVL 1800 3099 -2665 2306 102 0 3 chr11 10734917 10735222 -140048331 - AluSq SINE Alu -9 304 1 743 261 74 110 chr11 10735359 10735610 -140047943 + MLT1J LTR MaLR 3 227 -284 1846 156 0 31 chr11 10735610 10735930 -140047623 - AluJb SINE Alu -2 310 1 743 261 74 110 chr11 10735930 10736206 -140047347 + MLT1J LTR MaLR 227 511 0 192 380 8 25 chr11 10736206 10736327 -140047226 - L2 LINE L2 -873 2441 2323 453 265 184 14 chr11 10737750 10737897 -140045656 - MIR3 SINE MIR -16 192 21 3227 199 88 53 chr11 10738563 10740032 -140043521 - L1MDb LINE L1 -4487 1919 407 2321 275 39 2 chr11 10740005 10740627 -140042926 - L1MDb LINE L1 -5753 656 12 * 628 111 10 0 chr11 10740645 10740744 -140042809 - L1MB7 LINE L1 -15 6169 6070 204 40 0 0 chr11 10740744 10740769 -140042784 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1629 123 0 8 chr11 10740778 10741030 -140042523 - L1PA10 LINE L1 -11 6157 5908 1372 144 35 42 chr11 10741031 10741283 -140042270 - L1MB7 LINE L1 -106 6078 5827 2081 89 3 73 chr11 10741283 10741598 -140041955 - AluY SINE Alu -18 293 1 1372 144 35 42 chr11 10741598 10741657 -140041896 - L1MB7 LINE L1 -357 5827 5769 623 241 85 66 chr11 10741648 10743130 -140040423 - L1MEc LINE L1 -4760 1636 36 * 2373 57 0 10 chr11 10743153 10743449 -140040104 - AluY SINE Alu -18 293 1 292 355 33 44 chr11 10743461 10743734 -140039819 - L2 LINE L2 -540 2774 2505 243 132 0 0 chr11 10744068 10744106 -140039447 - Alu SINE Alu -9 292 255 1064 42 0 0 chr11 10744109 10744227 -140039326 - AluSq/x SINE Alu -182 130 13 310 328 178 35 chr11 10745283 10745621 -140037932 + L3 LINE CR1 726 1111 -466 550 256 83 22 chr11 10745645 10745825 -140037728 - MIR SINE MIR -56 206 16 343 296 0 0 chr11 10745886 10745967 -140037586 - FRAM/FAM SINE Alu -88 78 1 840 116 6 110 chr11 10745968 10746141 -140037412 - L1M3 LINE L1 -500 5671 5517 855 173 105 0 chr11 10746144 10746306 -140037247 - AluJo SINE Alu -133 179 1 13143 129 59 19 chr11 10746351 10748675 -140034878 + Tigger1 DNA MER2_type 1 2418 0 334 284 45 0 chr11 10748912 10749000 -140034553 + L1ME LINE L1 5666 5757 -364 183 42 0 0 chr11 10749090 10749114 -140034439 + (TA)n Simple_repeat Simple_repeat 2 25 0 383 157 148 17 chr11 10749142 10749257 -140034296 + L1ME4a LINE L1 5989 6118 -3 1883 151 11 0 chr11 10749270 10749555 -140033998 + AluJb SINE Alu 1 288 -24 201 205 0 121 chr11 10749723 10749806 -140033747 - L2 LINE L2 -4 3268 3196 345 333 42 0 chr11 10749893 10749989 -140033564 + L2 LINE L2 3121 3220 -52 855 202 5 31 chr11 10750663 10750856 -140032697 + MER20 DNA MER1_type 32 219 0 2157 128 0 0 chr11 10751138 10751428 -140032125 + AluSx SINE Alu 1 290 -22 1322 201 58 15 chr11 10751465 10751794 -140031759 + MER2 DNA MER2_type 2 344 0 2463 60 7 0 chr11 10752297 10752597 -140030956 + AluY SINE Alu 1 302 -9 771 262 62 9 chr11 10753167 10753377 -140030176 + MIR SINE MIR 4 224 -38 376 349 0 0 chr11 10754913 10755022 -140028531 - MIR SINE MIR -68 140 32 2232 102 3 3 chr11 10755783 10756078 -140027475 - AluSp SINE Alu -18 295 1 274 341 16 0 chr11 10756637 10756763 -140026790 + L3 LINE CR1 735 862 -715 357 256 7 66 chr11 10758110 10758247 -140025306 - MLT1J1 LTR MaLR 0 446 318 688 238 150 35 chr11 10758269 10758555 -140024998 - LTR36 LTR ERV1 0 611 293 338 75 60 0 chr11 10758620 10758687 -140024866 + GA-rich Low_complexity Low_complexity 2 72 0 596 269 56 15 chr11 10758776 10758973 -140024580 - MLT1J2 LTR MaLR -245 205 1 1398 230 104 47 chr11 10759057 10759390 -140024163 + MER21B LTR ERV1 1 370 -493 1539 185 20 30 chr11 10759390 10759692 -140023861 - AluJo SINE Alu -13 299 1 1398 230 104 47 chr11 10759692 10759828 -140023725 + MER21B LTR ERV1 370 497 -366 306 263 0 42 chr11 10760098 10760216 -140023337 + L1MC/D LINE L1 5720 5832 -1976 2216 153 8 99 chr11 10760216 10760330 -140023223 + L1MB2 LINE L1 5375 5498 -685 773 213 7 13 chr11 10760330 10760485 -140023068 + FRAM SINE Alu 1 154 -12 2216 153 8 99 chr11 10760485 10760893 -140022660 + L1MB2 LINE L1 5498 5849 -334 1654 140 12 43 chr11 10760931 10760993 -140022560 + L1MB2 LINE L1 5849 5911 -260 1838 91 0 0 chr11 10760993 10761234 -140022319 + AluY SINE Alu 71 311 0 1654 140 12 43 chr11 10761234 10761499 -140022054 + L1MB2 LINE L1 5911 6166 -5 652 210 57 17 chr11 10761572 10761748 -140021805 + L1M4 LINE L1 4676 4858 -1288 2088 165 21 35 chr11 10761811 10762235 -140021318 - L1MA5 LINE L1 0 6300 5883 855 196 80 9 chr11 10762246 10762471 -140021082 + L1M4 LINE L1 4856 5096 -1050 1258 146 0 101 chr11 10762825 10762878 -140020675 + AluJb SINE Alu 83 140 -172 2357 69 3 0 chr11 10762878 10763167 -140020386 + AluSc SINE Alu 1 290 -19 241 25 0 50 chr11 10763173 10763213 -140020340 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1258 146 0 101 chr11 10763213 10763399 -140020154 + AluJb SINE Alu 145 304 -8 210 259 0 0 chr11 10763532 10763590 -140019963 + (TA)n Simple_repeat Simple_repeat 1 58 0 433 264 136 13 chr11 10864784 10864939 -139918614 - MIR SINE MIR -72 190 17 432 206 112 9 chr11 10865162 10865269 -139918284 + L2 LINE L2 3196 3313 0 4727 199 30 8 chr11 10865571 10866518 -139917035 - L1P LINE L1 -5169 977 11 272 282 111 8 chr11 10867198 10867315 -139916238 + L2 LINE L2 3138 3266 -6 759 303 194 27 chr11 10868654 10868860 -139914693 + L2 LINE L2 2216 2386 -928 8437 52 1 0 chr11 10868860 10869825 -139913728 + LTR5 LTR ERVK 1 966 -3 759 303 194 27 chr11 10869825 10870241 -139913312 + L2 LINE L2 2386 2942 -372 23 0 0 0 chr11 10870420 10870443 -139913110 + AT_rich Low_complexity Low_complexity 1 23 0 614 271 96 102 chr11 10870645 10870985 -139912568 - L1ME3 LINE L1 -309 5830 5494 2917 155 9 60 chr11 10870991 10871527 -139912026 + MLT2B2 LTR ERVL 7 515 0 614 271 96 102 chr11 10871527 10871731 -139911822 - L1ME3 LINE L1 -645 5494 5290 360 0 0 0 chr11 10871906 10871946 -139911607 + (TG)n Simple_repeat Simple_repeat 2 41 0 1387 158 18 4 chr11 10871947 10872175 -139911378 - AluJo SINE Alu -39 273 43 600 153 0 9 chr11 10872275 10872386 -139911167 + LTR5 LTR ERVK 858 967 -2 317 328 146 24 chr11 10872537 10872918 -139910635 + L2 LINE L2 2638 3079 -193 360 64 0 0 chr11 10873207 10873254 -139910299 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 237 139 125 14 chr11 10874982 10875054 -139908499 + MIR3 SINE MIR 5 84 -124 207 336 66 0 chr11 10876610 10876732 -139906821 - L2 LINE L2 -1 3271 3142 1656 155 8 4 chr11 10876927 10877185 -139906368 - AluJo SINE Alu -27 285 27 7451 42 3 0 chr11 10878147 10879218 -139904335 - L1PA4 LINE L1 -4 6151 5082 26 0 0 0 chr11 10879288 10879314 -139904239 + AT_rich Low_complexity Low_complexity 1 26 0 1040 92 8 0 chr11 10879384 10879515 -139904038 + AluSp SINE Alu 39 170 -143 234 0 0 0 chr11 10879850 10879876 -139903677 + (T)n Simple_repeat Simple_repeat 1 26 0 206 301 26 59 chr11 10879990 10880143 -139903410 - MIR SINE MIR -43 219 72 591 210 59 41 chr11 10880202 10880399 -139903154 + MIR SINE MIR 64 262 0 1862 122 59 0 chr11 10880406 10880676 -139902877 - AluSg SINE Alu -24 286 1 1577 214 40 81 chr11 10881114 10881329 -139902224 + HAL1b LINE L1 794 1016 -332 1805 190 0 0 chr11 10881329 10881629 -139901924 + AluJb SINE Alu 1 300 -12 1577 214 40 81 chr11 10881629 10881992 -139901561 + HAL1b LINE L1 1016 1348 0 21 36 0 0 chr11 10882805 10882833 -139900720 + AT_rich Low_complexity Low_complexity 1 28 0 1763 207 36 66 chr11 10884170 10884425 -139899128 - LTR16C LTR ERVL -2 489 253 2362 104 0 0 chr11 10884425 10884722 -139898831 - AluSx SINE Alu -15 297 1 1763 207 36 66 chr11 10884722 10884935 -139898618 - LTR16C LTR ERVL -238 253 35 1994 146 3 19 chr11 10885064 10885372 -139898181 - AluJb SINE Alu -9 303 1 670 264 31 22 chr11 10885647 10885874 -139897679 + L1M4 LINE L1 4616 4844 -1302 249 118 0 0 chr11 10885905 10885939 -139897614 - U2 snRNA snRNA -154 34 1 354 290 47 51 chr11 10886013 10886289 -139897264 + L1M4 LINE L1 4931 5205 -941 2290 112 0 3 chr11 10886879 10887183 -139896370 + AluSx SINE Alu 1 303 -9 2398 84 3 0 chr11 10887396 10887693 -139895860 + AluSx SINE Alu 1 298 -14 1283 125 22 5 chr11 10887913 10888097 -139895456 + AluSg/x SINE Alu 111 297 -15 1665 169 54 30 chr11 10888103 10888435 -139895118 - THE1C LTR MaLR -35 340 1 309 176 20 0 chr11 10888435 10888483 -139895070 - AluSp SINE Alu -121 182 134 425 137 0 68 chr11 10888491 10888542 -139895011 - MLT1B LTR MaLR -318 72 26 1745 153 85 23 chr11 10888542 10888895 -139894658 + THE1C LTR MaLR 1 375 0 425 137 0 68 chr11 10888895 10888916 -139894637 - MLT1B LTR MaLR -364 26 5 297 75 0 0 chr11 10888972 10889012 -139894541 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2193 226 48 35 chr11 10889158 10889737 -139893816 - MLT1E LTR MaLR -2 591 5 220 353 58 14 chr11 10890141 10890280 -139893273 + L2 LINE L2 3169 3313 0 1893 177 3 0 chr11 10890282 10890582 -139892971 + AluJo SINE Alu 1 301 -11 266 224 15 30 chr11 10890981 10891048 -139892505 - L2 LINE L2 0 3272 3207 2003 167 0 0 chr11 10891167 10891473 -139892080 + AluJb SINE Alu 1 306 -6 288 0 0 0 chr11 10891473 10891505 -139892048 + (TA)n Simple_repeat Simple_repeat 2 33 0 1577 171 0 32 chr11 10891538 10891819 -139891734 - AluJo SINE Alu -40 272 1 839 233 198 30 chr11 10891819 10892218 -139891335 + L3 LINE CR1 636 1101 -476 374 332 82 26 chr11 10893324 10893556 -139889997 - MLT1L LTR MaLR 0 615 371 2596 51 0 0 chr11 10898690 10898986 -139884567 + AluY SINE Alu 1 296 -15 671 164 0 64 chr11 10899058 10899198 -139884355 - FLAM_C SINE Alu 0 133 3 600 260 75 35 chr11 10900552 10900779 -139882774 - MIR SINE MIR -12 250 15 363 96 0 0 chr11 10901187 10901239 -139882314 + (TG)n Simple_repeat Simple_repeat 1 52 0 196 236 0 83 chr11 10901778 10901850 -139881703 + L2 LINE L2 3248 3313 0 1676 179 101 31 chr11 10901993 10902351 -139881202 - MLT1B LTR MaLR -3 387 5 291 273 8 83 chr11 10902812 10902933 -139880620 - MER5B DNA MER1_type -66 112 1 412 286 70 36 chr11 10904057 10904358 -139879195 + L1MC5 LINE L1 7451 7761 -200 235 127 32 48 chr11 10904392 10904455 -139879098 + A-rich Low_complexity Low_complexity 4 65 0 359 254 0 25 chr11 10904502 10904620 -139878933 + L1MC5 LINE L1 7806 7920 -41 23 54 0 0 chr11 10904687 10904724 -139878829 + AT_rich Low_complexity Low_complexity 1 37 0 1587 129 0 0 chr11 10905096 10905313 -139878240 + AluJb SINE Alu 87 303 -9 21 36 0 0 chr11 10905448 10905476 -139878077 + AT_rich Low_complexity Low_complexity 1 28 0 1764 148 16 0 chr11 10905682 10905938 -139877615 + AluJo SINE Alu 22 281 -31 215 59 0 29 chr11 10905944 10905978 -139877575 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2016 169 5 63 chr11 10906087 10906513 -139877040 + MER57A LTR ERV1 1 401 -2 698 252 191 36 chr11 10906521 10906830 -139876723 + L1MEd LINE L1 3 359 -5760 796 253 77 37 chr11 10906847 10907144 -139876409 + L1MEd LINE L1 515 823 -5296 370 259 79 79 chr11 10907238 10907282 -139876271 + L1ME LINE L1 5477 5520 -601 2346 104 0 3 chr11 10907282 10907581 -139875972 - AluSq SINE Alu -15 298 1 370 259 79 79 chr11 10907581 10907725 -139875828 + L1ME LINE L1 5519 5665 -456 1270 254 105 32 chr11 10907843 10908434 -139875119 + L1MEd LINE L1 966 1599 -4530 730 174 0 42 chr11 10908457 10908601 -139874952 - AluJo SINE Alu -174 138 1 831 236 117 34 chr11 10908618 10909063 -139874490 + L1MEd LINE L1 1647 2128 -4182 907 108 31 8 chr11 10909064 10909194 -139874359 + AluSq/x SINE Alu 1 133 -179 2204 128 0 16 chr11 10909206 10909518 -139874035 + AluSg SINE Alu 1 307 -3 210 37 0 0 chr11 10909521 10909548 -139874005 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3186 221 43 66 chr11 10909548 10909722 -139873831 + L1MEd LINE L1 2104 2280 -3849 1906 155 0 32 chr11 10909722 10910038 -139873515 + AluJb SINE Alu 1 306 -6 3186 221 43 66 chr11 10910038 10910732 -139872821 + L1MEd LINE L1 2280 2988 -3141 2027 129 4 0 chr11 10910732 10911049 -139872504 + AluSx SINE Alu 1 318 0 3186 221 43 66 chr11 10911049 10911776 -139871777 + L1MEd LINE L1 2988 3825 -2304 23 0 0 0 chr11 10912153 10912176 -139871377 + AT_rich Low_complexity Low_complexity 1 23 0 1203 273 44 9 chr11 10912232 10912687 -139870866 - L1MC4a LINE L1 -1788 6020 5550 1981 207 78 51 chr11 10912720 10913438 -139870115 + MER21B LTR ERV1 15 809 -54 261 273 68 23 chr11 10913480 10913612 -139869941 - L1MC4a LINE L1 -2267 5541 5404 * 439 317 128 29 chr11 10913601 10914177 -139869376 - L1MC4a LINE L1 -1825 4321 3669 537 16 0 0 chr11 10914177 10914239 -139869314 + (TG)n Simple_repeat Simple_repeat 1 62 0 439 317 128 29 chr11 10914239 10914319 -139869234 - L1MC4a LINE L1 -2477 3669 3598 639 285 65 5 chr11 10915252 10915466 -139868087 + MIR SINE MIR 29 255 -7 2616 111 3 6 chr11 10915466 10915828 -139867725 + THE1B LTR MaLR 1 361 -3 228 302 43 29 chr11 10915993 10916132 -139867421 + L2 LINE L2 2919 3059 -213 2313 117 0 0 chr11 10916328 10916637 -139866916 - AluSx SINE Alu -3 309 1 825 272 128 13 chr11 10917618 10917931 -139865622 + MLT1I LTR MaLR 7 355 -54 1105 213 173 16 chr11 10918246 10918658 -139864895 + MLT1F LTR MaLR 1 541 -1 1337 125 91 30 chr11 10919361 10919541 -139864012 + L1MA8 LINE L1 5976 6182 -109 8922 108 16 4 chr11 10919541 10920823 -139862730 - HSMAR2 DNA Mariner -4 1298 1 1337 125 91 30 chr11 10920823 10920938 -139862615 + L1MA8 LINE L1 6182 6289 -2 219 254 99 0 chr11 10921077 10921148 -139862405 - MIR SINE MIR -65 197 120 640 124 18 44 chr11 10921585 10921698 -139861855 + L1MB2 LINE L1 6060 6169 -2 252 344 0 0 chr11 10922036 10922126 -139861427 - L1MC4 LINE L1 -1339 6703 6614 235 303 0 22 chr11 10922137 10922226 -139861327 + L1MC4 LINE L1 6617 6703 -1339 352 307 100 0 chr11 10923420 10923560 -139859993 - MIR3 SINE MIR -22 186 33 225 0 0 0 chr11 10923954 10923979 -139859574 + (T)n Simple_repeat Simple_repeat 1 25 0 591 210 59 41 chr11 10924305 10924502 -139859051 + MIR SINE MIR 64 262 0 990 149 0 0 chr11 10924509 10924657 -139858896 - AluSg/x SINE Alu -24 288 141 1775 127 16 65 chr11 10924781 10925104 -139858449 + MLT1B LTR MaLR 84 390 0 420 312 0 8 chr11 10926094 10926219 -139857334 - L2 LINE L2 -278 2994 2871 2226 135 32 46 chr11 10926327 10926490 -139857063 - L1MC3 LINE L1 0 7785 7621 1879 183 0 0 chr11 10926490 10926790 -139856763 - AluJb SINE Alu -12 300 1 2226 135 32 46 chr11 10926790 10927064 -139856489 - L1MC3 LINE L1 -164 7621 7354 261 291 41 76 chr11 10927148 10927320 -139856233 + L2 LINE L2 2708 2873 -441 1204 176 0 82 chr11 10927338 10927616 -139855937 - AluJo SINE Alu -4 308 54 854 138 8 0 chr11 10927616 10927739 -139855814 + AluJb SINE Alu 1 124 -188 5590 37 0 0 chr11 10927742 10928755 -139854798 - L1PA4 LINE L1 -410 5745 4733 3331 33 10 0 chr11 10928755 10929143 -139854410 + L1PA4 LINE L1 5756 6150 -5 885 210 34 0 chr11 10929148 10929324 -139854229 + AluJb SINE Alu 131 312 0 385 176 47 3 chr11 10929325 10929406 -139854147 - AluJ/FLAM SINE Alu -240 62 1 529 309 72 8 chr11 10929464 10929729 -139853824 - L2 LINE L2 -776 2538 2257 848 200 19 0 chr11 10930155 10930310 -139853243 - FRAM SINE Alu -13 163 6 1660 177 20 23 chr11 10930356 10930655 -139852898 - AluJb SINE Alu -14 298 1 33449 97 12 14 chr11 10930909 10935708 -139847845 + L1P LINE L1 11 4797 -1349 232 169 0 31 chr11 10935695 10935760 -139847793 + L1MC4 LINE L1 6640 6702 -1340 * 333 207 98 0 chr11 10935769 10935851 -139847702 + L1MC4 LINE L1 6614 6703 -1339 216 97 0 0 chr11 10935851 10935882 -139847671 + (TATG)n Simple_repeat Simple_repeat 1 31 0 878 172 53 13 chr11 10935882 10936012 -139847541 + L1PA6 LINE L1 4794 4917 -1229 360 64 0 0 chr11 10936012 10936059 -139847494 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6719 59 29 5 chr11 10936061 10937386 -139846167 + L1PA6 LINE L1 4799 6145 -9 878 172 53 13 chr11 10937386 10937499 -139846054 + L1PA6 LINE L1 4917 5061 -1085 374 277 63 20 chr11 10937523 10937716 -139845837 + MLT1L LTR MaLR 232 531 -84 1076 169 0 0 chr11 10937733 10937899 -139845654 - AluJ SINE Alu -13 299 134 388 304 8 24 chr11 10937927 10938052 -139845501 + MER5B DNA MER1_type 2 124 -54 774 242 0 0 chr11 10938053 10938202 -139845351 - AluJo SINE Alu -27 285 137 277 239 0 0 chr11 10938202 10938269 -139845284 + MER5B DNA MER1_type 112 178 0 745 248 129 0 chr11 10939210 10939420 -139844133 + MIR SINE MIR 26 262 0 4906 254 41 11 chr11 10939456 10940839 -139842714 + HERVL LTR ERVL 3563 5086 -678 22 35 0 0 chr11 10941432 10941461 -139842092 + AT_rich Low_complexity Low_complexity 1 29 0 433 264 136 13 chr11 10941585 10941740 -139841813 - MIR SINE MIR -72 190 17 441 206 112 9 chr11 10941963 10942070 -139841483 + L2 LINE L2 3196 3313 0 246 105 0 0 chr11 10942220 10942258 -139841295 + (GA)n Simple_repeat Simple_repeat 2 39 0 1521 85 27 0 chr11 10942356 10942579 -139840974 - L1MA8 LINE L1 -7 6284 6056 258 323 19 77 chr11 10943475 10943630 -139839923 + L2 LINE L2 3127 3272 0 24 0 0 0 chr11 10943977 10944001 -139839552 + AT_rich Low_complexity Low_complexity 1 24 0 640 152 125 0 chr11 10944001 10944113 -139839440 - AluJo SINE Alu -185 127 2 1847 176 0 22 chr11 10944491 10944964 -139838589 - AluJb SINE Alu 0 466 1 1953 154 17 0 chr11 10945043 10945335 -139838218 - AluJb SINE Alu -15 297 1 929 251 103 48 chr11 10946820 10947058 -139836495 + MLT1G LTR MaLR 4 262 -333 1698 236 137 42 chr11 10947058 10947600 -139835953 - MLT1E LTR MaLR 0 593 1 929 251 103 48 chr11 10947600 10947652 -139835901 + MLT1G LTR MaLR 262 310 -285 1081 234 5 5 chr11 10947661 10947866 -139835687 + MLT1G LTR MaLR 346 550 -40 206 323 20 20 chr11 10949472 10949571 -139833982 + MIR SINE MIR 43 141 -67 276 211 0 0 chr11 10950318 10950370 -139833183 + L2 LINE L2 3219 3270 -2 562 281 80 28 chr11 10950575 10950863 -139832690 + L1ME4a LINE L1 5600 5905 -216 449 51 0 0 chr11 10950971 10951030 -139832523 + Alu SINE Alu 243 301 -10 1027 288 94 15 chr11 10952008 10952546 -139831007 + L2 LINE L2 2725 3313 0 328 111 0 0 chr11 10952912 10952957 -139830596 - MLT2C1 LTR ERVL -2 518 474 221 180 80 0 chr11 10953015 10953065 -139830488 + GA-rich Low_complexity Low_complexity 2 55 0 1720 171 48 12 chr11 10953065 10953399 -139830154 - MLT2C1 LTR ERVL -48 349 4 1187 280 138 6 chr11 10953711 10954533 -139829020 - L2 LINE L2 -81 3232 2302 2570 111 8 13 chr11 10954940 10955317 -139828236 - THE1C LTR MaLR 0 375 1 182 361 55 6 chr11 10955701 10955884 -139827669 - L2 LINE L2 -499 2815 2624 1008 198 5 40 chr11 10956800 10957002 -139826551 - MER21B LTR ERV1 -373 490 296 203 213 43 0 chr11 10957136 10957183 -139826370 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3136 176 55 105 chr11 10957232 10958157 -139825396 - L1MA10 LINE L1 -99 6235 5357 219 253 165 0 chr11 10958544 10958623 -139824930 + MIR SINE MIR 64 155 -107 553 225 9 0 chr11 10958945 10959056 -139824497 - L2 LINE L2 -2 3311 3200 275 289 10 10 chr11 10959644 10959741 -139823812 + MIR SINE MIR 41 137 -71 991 271 86 21 chr11 10960371 10960754 -139822799 + MLT1K LTR MaLR 181 588 0 1897 172 30 9 chr11 10961402 10961552 -139822001 + MER2 DNA MER2_type 1 146 -199 7221 114 46 35 chr11 10961552 10962769 -139820784 + Tigger3b DNA MER2_type 1 1231 0 1897 172 30 9 chr11 10962769 10962955 -139820598 + MER2 DNA MER2_type 146 344 -1 2347 112 0 0 chr11 10962976 10963281 -139820272 + AluSq SINE Alu 1 305 -8 30 93 0 0 chr11 10964320 10964406 -139819147 + AT_rich Low_complexity Low_complexity 1 86 0 796 100 0 17 chr11 10964538 10964658 -139818895 - L1PB4 LINE L1 -2 6154 6037 1463 192 12 51 chr11 10965116 10965449 -139818104 + L1ME2 LINE L1 5842 6161 -3 1332 198 23 0 chr11 10966180 10966438 -139817115 - MER58B DNA MER1_type 0 341 78 1550 108 0 0 chr11 10966440 10966634 -139816919 - AluSg/x SINE Alu -14 296 103 232 330 34 0 chr11 10966663 10966751 -139816802 - MER58B DNA MER1_type -250 91 1 238 291 27 63 chr11 10968073 10968191 -139815362 - MIR SINE MIR -66 142 37 329 290 97 43 chr11 10968346 10968532 -139815021 + MIR3 SINE MIR 3 198 -10 902 284 81 50 chr11 10969000 10969603 -139813950 - HAL1 LINE L1 -1885 622 1 2211 288 83 38 chr11 10969624 10970541 -139813012 + L2 LINE L2 1853 2727 -586 1096 217 159 0 chr11 10970541 10970799 -139812754 - AluJo SINE Alu -3 299 1 2211 288 83 38 chr11 10970799 10971052 -139812501 + L2 LINE L2 2727 2967 -346 1899 89 58 122 chr11 10971052 10971412 -139812141 - MER1B DNA MER1_type 0 337 1 2211 288 83 38 chr11 10971412 10971636 -139811917 + L2 LINE L2 2967 3313 0 2374 96 0 0 chr11 10972763 10973066 -139810487 - AluSc SINE Alu -6 303 1 1775 100 93 7 chr11 10973786 10974055 -139809498 + AluSx SINE Alu 1 292 -20 1544 186 24 17 chr11 10974144 10974435 -139809118 - AluJo SINE Alu -19 293 1 2147 92 43 0 chr11 10975720 10976002 -139807551 - AluSc SINE Alu -15 294 1 273 254 59 67 chr11 10976271 10976580 -139806973 - Charlie1 DNA MER1_type -1027 1734 1378 31565 105 25 55 chr11 10978013 10984336 -139799217 - L1PA7 LINE L1 -14 6140 12 267 281 45 0 chr11 10984349 10984438 -139799115 + MER112 DNA MER1_type 164 256 -4 499 207 121 35 chr11 10984929 10985103 -139798450 - ORSL DNA AcHobo -76 199 11 693 283 105 41 chr11 10985332 10985721 -139797832 - MLT1K LTR MaLR -10 578 165 192 194 129 16 chr11 10985989 10986051 -139797502 - MIR SINE MIR -69 193 125 180 308 0 0 chr11 10986060 10986112 -139797441 - MIR SINE MIR -15 247 196 237 268 7 80 chr11 10986139 10986277 -139797276 - LTR67 LTR ERVL -4 553 426 282 184 0 0 chr11 10986404 10986453 -139797100 - MLT1K LTR MaLR -339 249 201 1549 238 118 9 chr11 10986600 10987042 -139796511 - LTR33 LTR ERVL -31 490 1 466 314 7 7 chr11 10987053 10987193 -139796360 - MIR SINE MIR -118 144 5 778 280 71 4 chr11 10987789 10988028 -139795525 - MIR SINE MIR 0 262 8 396 194 71 51 chr11 10988380 10988478 -139795075 + MLT1J2 LTR MaLR 307 406 -44 3627 119 22 8 chr11 10988502 10989088 -139794465 - L1MA3 LINE L1 -2 6303 5710 8014 215 36 28 chr11 10989432 10991606 -139791947 + L1M4 LINE L1 2183 4374 -1772 7129 193 23 20 chr11 10991814 10994264 -139789289 + L1MB7 LINE L1 3709 6165 -19 1856 174 3 7 chr11 10994453 10994752 -139788801 + AluJb SINE Alu 15 312 0 2628 118 3 3 chr11 10995330 10995694 -139787859 - THE1B LTR MaLR 0 364 1 1210 228 55 78 chr11 10995969 10996610 -139786943 - L1M4 LINE L1 -2447 3699 3074 830 147 0 23 chr11 10996656 10996785 -139786768 - FLAM_C SINE Alu -17 126 1 325 195 0 122 chr11 10996786 10996828 -139786725 - L1M4 LINE L1 -3059 3087 3041 2227 113 3 0 chr11 10996828 10997130 -139786423 - AluSq SINE Alu -10 303 1 325 195 0 122 chr11 10997130 10997210 -139786343 - L1M4 LINE L1 -3105 3041 2980 254 257 119 0 chr11 10998029 10998130 -139785423 - L1ME4a LINE L1 -195 5926 5814 517 279 40 35 chr11 10999097 10999298 -139784255 + LTR33 LTR ERVL 320 521 0 298 265 111 8 chr11 11000338 11000455 -139783098 + L2 LINE L2 3138 3266 -6 243 295 0 0 chr11 11001090 11001151 -139782402 + MLT1J LTR MaLR 229 289 -222 2810 3 0 16 chr11 11001160 11001469 -139782084 - AluYb8 SINE Alu -14 304 1 430 214 152 45 chr11 11001533 11001711 -139781842 + MLT1J LTR MaLR 304 500 -11 481 202 40 8 chr11 11002355 11002479 -139781074 - L1MB4 LINE L1 0 6180 6053 23 33 0 0 chr11 11002485 11002515 -139781038 + AT_rich Low_complexity Low_complexity 1 30 0 521 98 24 0 chr11 11002515 11002597 -139780956 - L1PA16 LINE L1 -4 6162 6079 204 206 48 16 chr11 11004697 11004760 -139778793 + G-rich Low_complexity Low_complexity 3 67 0 2597 236 143 39 chr11 11004840 11005570 -139777983 + Charlie7 DNA MER1_type 32 931 -1681 2337 89 0 16 chr11 11005570 11005874 -139777679 + AluSx SINE Alu 1 299 -13 2597 236 143 39 chr11 11005874 11006311 -139777242 + Charlie7 DNA MER1_type 931 1321 -1291 677 296 126 22 chr11 11006389 11006747 -139776806 - Charlie7 DNA MER1_type -2217 395 1 2363 227 115 50 chr11 11006942 11007279 -139776274 + Charlie7 DNA MER1_type 1345 1659 -953 414 57 0 0 chr11 11007279 11007332 -139776221 + (CA)n Simple_repeat Simple_repeat 2 54 0 2363 227 115 50 chr11 11007332 11008111 -139775442 + Charlie7 DNA MER1_type 1659 2533 -79 207 291 97 63 chr11 11008268 11008856 -139774697 - L2 LINE L2 -828 2486 1879 432 0 0 0 chr11 11008901 11008949 -139774604 + (TG)n Simple_repeat Simple_repeat 2 49 0 324 0 0 0 chr11 11009003 11009039 -139774514 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 73 0 0 chr11 11009543 11009598 -139773955 + GC_rich Low_complexity Low_complexity 1 55 0 197 211 35 0 chr11 11011252 11011309 -139772244 + L2 LINE L2 3255 3313 0 712 279 68 13 chr11 11011400 11011605 -139771948 - MIR SINE MIR -10 252 31 2334 104 0 3 chr11 11011605 11011914 -139771639 - AluSx SINE Alu -4 308 1 712 279 68 13 chr11 11011914 11011945 -139771608 - MIR SINE MIR -231 31 3 336 248 178 0 chr11 11012015 11012116 -139771437 - L2 LINE L2 0 3313 3195 2192 118 3 19 chr11 11012236 11012550 -139771003 - AluSc SINE Alu 0 309 1 578 156 91 65 chr11 11013112 11013266 -139770287 + MER103 DNA DNA 1 158 -8 1761 175 13 13 chr11 11015633 11015941 -139767612 - AluJb SINE Alu -4 308 1 1881 140 18 0 chr11 11016282 11016554 -139766999 + AluJb SINE Alu 6 282 -30 390 235 0 12 chr11 11016815 11016900 -139766653 - FLAM_A SINE Alu -27 106 23 312 178 0 96 chr11 11016888 11016961 -139766592 + AluJb SINE Alu 88 153 -149 * 372 224 84 19 chr11 11018048 11018155 -139765398 - MIR3 SINE MIR -6 202 89 191 250 17 0 chr11 11018438 11018498 -139765055 + MIR SINE MIR 2 62 -200 372 233 60 21 chr11 11018501 11018647 -139764906 + MIR SINE MIR 12 160 -63 363 81 70 0 chr11 11018677 11018763 -139764790 + (TA)n Simple_repeat Simple_repeat 1 92 0 1880 161 0 17 chr11 11018763 11019062 -139764491 - AluJb SINE Alu -18 294 1 2187 124 0 7 chr11 11019073 11019372 -139764181 - AluSx SINE Alu -15 297 1 247 196 0 0 chr11 11019407 11019458 -139764095 + GA-rich Low_complexity Low_complexity 2 52 0 537 278 124 51 chr11 11020751 11020883 -139762670 - L2 LINE L2 -30 3283 3162 1132 236 167 5 chr11 11020883 11021332 -139762221 - LTR33A LTR ERVL 0 523 2 537 278 124 51 chr11 11021332 11021698 -139761855 - L2 LINE L2 -151 3162 2749 707 213 46 51 chr11 11022648 11022845 -139760708 + MIR SINE MIR 64 259 -3 714 328 25 4 chr11 11022892 11023127 -139760426 - MIR SINE MIR -17 245 6 738 294 85 4 chr11 11023600 11023835 -139759718 + MIR SINE MIR 9 262 0 30647 98 18 61 chr11 11024088 11024643 -139758910 + L1PA7 LINE L1 12 589 -5565 2323 101 3 0 chr11 11024643 11024941 -139758612 + AluSq SINE Alu 1 299 -14 30647 98 18 61 chr11 11024941 11028421 -139755132 + L1PA7 LINE L1 589 3654 -2500 2815 3 0 3 chr11 11028421 11028721 -139754832 + AluYa5 SINE Alu 1 299 -12 30647 98 18 61 chr11 11028721 11031119 -139752434 + L1PA7 LINE L1 3654 6154 0 2034 146 0 0 chr11 11031385 11031679 -139751874 + AluSx SINE Alu 1 294 -18 1777 164 0 0 chr11 11031689 11031958 -139751595 + AluSx SINE Alu 39 307 -5 210 284 62 119 chr11 11032718 11032894 -139750659 + L2 LINE L2 3057 3222 -50 202 313 24 12 chr11 11033530 11033613 -139749940 + L3 LINE CR1 1305 1388 -189 2379 141 58 22 chr11 11033666 11034078 -139749475 - MSTA LTR MaLR 0 428 2 2057 213 87 9 chr11 11034244 11034775 -139748778 + MLT1E2 LTR MaLR 96 626 0 235 168 0 178 chr11 11035433 11035540 -139748013 - L2 LINE L2 -588 2726 2639 616 291 171 0 chr11 11035696 11035906 -139747647 - MIR SINE MIR -15 247 2 675 261 52 36 chr11 11038937 11039243 -139744310 - L1MC4a LINE L1 -1763 6045 5735 326 229 219 0 chr11 11040389 11040485 -139743068 + MIR SINE MIR 28 144 -118 3197 161 51 4 chr11 11040859 11041393 -139742160 - MER68 LTR ERV1 0 562 4 2007 137 3 44 chr11 11041858 11042173 -139741380 - AluJb SINE Alu -10 302 1 764 252 56 39 chr11 11042273 11042507 -139741046 + MIR SINE MIR 20 257 -5 264 283 164 45 chr11 11043369 11043546 -139740007 - MIR SINE MIR 0 262 65 683 237 97 43 chr11 11043832 11044111 -139739442 - L2 LINE L2 -1 3312 3019 1850 155 14 7 chr11 11044602 11044892 -139738661 - AluSx SINE Alu -20 292 1 298 259 98 27 chr11 11045472 11045584 -139737969 + L3 LINE CR1 1450 1569 -8 853 76 18 1 chr11 11047077 11047210 -139736343 - L1PA10 LINE L1 -196 5972 5855 1007 49 16 0 chr11 11047210 11047330 -139736223 + L1PA10 LINE L1 6042 6166 -2 2243 122 0 0 chr11 11049033 11049328 -139734225 - AluSq SINE Alu -18 295 1 275 225 10 4 chr11 11049687 11049803 -139733750 + MER117 DNA MER1_type 2 155 -42 1596 316 60 17 chr11 11050794 11051446 -139732107 - L2 LINE L2 -588 2726 2047 325 305 148 0 chr11 11051932 11052060 -139731493 - L2 LINE L2 -1 3312 3166 229 295 156 49 chr11 11052218 11052628 -139730925 - L2 LINE L2 -337 2977 2524 323 313 84 8 chr11 11053076 11053209 -139730344 + MIR SINE MIR 19 160 -65 3506 158 16 6 chr11 11053242 11053863 -139729690 + L1MB4 LINE L1 5554 6180 0 2360 97 0 3 chr11 11055264 11055562 -139727991 - AluSg1 SINE Alu -12 297 1 2109 115 33 13 chr11 11056886 11057190 -139726363 - AluSg SINE Alu 0 310 1 382 254 52 37 chr11 11057201 11057335 -139726218 + MIR SINE MIR 90 225 -37 206 274 32 0 chr11 11057946 11058008 -139725545 + (CATG)n Simple_repeat Simple_repeat 1 64 0 317 297 55 0 chr11 11058347 11058438 -139725115 - L2 LINE L2 -5 3308 3213 428 340 53 5 chr11 11058661 11058849 -139724704 + MIR3 SINE MIR 1 197 -11 450 325 143 51 chr11 11059390 11059818 -139723735 - L1ME4a LINE L1 0 6121 5655 218 283 0 0 chr11 11060314 11060360 -139723193 + polypyrimidine Low_complexity Low_complexity 4 49 0 377 239 107 50 chr11 11060811 11060970 -139722583 + MIR SINE MIR 65 232 -30 1214 190 145 21 chr11 11061163 11061536 -139722017 - Charlie1 DNA MER1_type 0 2761 2343 232 310 17 0 chr11 11061536 11061594 -139721959 - Charlie1 DNA MER1_type -2702 59 1 488 16 16 0 chr11 11061791 11061852 -139721701 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 180 366 76 8 chr11 11061911 11062042 -139721511 - L2 LINE L2 -1756 1558 1419 253 250 29 0 chr11 11062379 11062447 -139721106 - L2 LINE L2 -30 3242 3173 871 235 171 7 chr11 11062494 11062775 -139720778 + L2 LINE L2 2986 3312 -1 258 227 182 11 chr11 11064145 11064233 -139719320 + MIR3 SINE MIR 99 201 -7 230 229 62 0 chr11 11064370 11064418 -139719135 + MIR3 SINE MIR 152 202 -6 * 258 328 117 8 chr11 11064416 11064544 -139719009 - MIR3 SINE MIR -51 157 16 189 0 0 0 chr11 11064571 11064592 -139718961 + (TG)n Simple_repeat Simple_repeat 2 22 0 269 235 0 0 chr11 11064753 11064804 -139718749 + L2 LINE L2 3263 3313 0 2293 129 6 24 chr11 11068822 11069163 -139714390 + MER1B DNA MER1_type 2 336 -1 222 217 0 22 chr11 11070309 11070355 -139713198 - L3b LINE CR1 -10 1573 1529 30 0 0 0 chr11 11070427 11070457 -139713096 + AT_rich Low_complexity Low_complexity 1 30 0 183 288 75 12 chr11 11070710 11070790 -139712763 - MIR SINE MIR -118 144 60 2173 113 14 0 chr11 11071353 11071645 -139711908 - AluSx SINE Alu -10 302 7 315 207 83 33 chr11 11072796 11072917 -139710636 - HAL1 LINE L1 0 2507 2381 447 261 78 22 chr11 11073006 11073198 -139710355 - L1MC4a LINE L1 -325 5796 5682 4422 232 65 27 chr11 11073915 11075452 -139708101 + L1ME4a LINE L1 37 1632 -4764 1101 213 77 0 chr11 11075468 11075806 -139707747 + L1ME4a LINE L1 4302 4665 -1550 * 1591 220 28 8 chr11 11075801 11076201 -139707352 + L1ME4a LINE L1 5595 6002 -231 262 229 30 0 chr11 11076206 11076283 -139707270 + L1MA10 LINE L1 6074 6148 -14 214 292 31 0 chr11 11076309 11076374 -139707179 + MIR3 SINE MIR 133 199 -9 2369 129 5 15 chr11 11077169 11077551 -139706002 - Tigger3b DNA MER2_type -14 1217 840 1263 97 88 23 chr11 11077551 11077767 -139705786 + MER30 DNA MER1_type 1 230 0 * 4392 105 80 26 chr11 11077767 11078569 -139704984 - Tigger3b DNA MER2_type -384 847 3 195 229 82 49 chr11 11078689 11078750 -139704803 - L2 LINE L2 -51 3221 3159 329 231 0 22 chr11 11079056 11079147 -139704406 + L1ME4a LINE L1 6101 6189 -1 183 307 0 93 chr11 11079167 11079242 -139704311 + L2 LINE L2 3188 3255 -58 223 318 15 0 chr11 11079682 11079748 -139703805 - L2 LINE L2 -653 2661 2595 710 309 93 36 chr11 11080073 11080406 -139703147 + L3 LINE CR1 988 1339 -238 669 238 108 36 chr11 11080418 11080641 -139702912 - MIR SINE MIR 0 262 24 243 356 0 11 chr11 11080690 11080777 -139702776 + L3 LINE CR1 1371 1456 -121 391 266 85 0 chr11 11080831 11080925 -139702628 + MER5A DNA MER1_type 10 111 -78 472 302 117 9 chr11 11080957 11081179 -139702374 + MIR SINE MIR 6 251 -11 2195 53 49 11 chr11 11081704 11081989 -139701564 + AluY SINE Alu 1 296 -15 2308 94 3 0 chr11 11083814 11084112 -139699441 + AluY SINE Alu 1 299 -12 1596 251 72 70 chr11 11084428 11085304 -139698249 - L2 LINE L2 -4 3309 2419 465 307 76 76 chr11 11086067 11086331 -139697222 - L2 LINE L2 -5 3267 3004 498 276 105 0 chr11 11086363 11086591 -139696962 + MLT1L LTR MaLR 1 252 -363 219 390 45 32 chr11 11086904 11087058 -139696495 - L2 LINE L2 -560 2754 2599 190 224 271 35 chr11 11087064 11087149 -139696404 + L2 LINE L2 3163 3267 -5 23 54 0 0 chr11 11088085 11088122 -139695431 + AT_rich Low_complexity Low_complexity 1 37 0 2376 78 3 0 chr11 11088408 11088701 -139694852 + AluSg SINE Alu 1 294 -16 378 0 0 0 chr11 11089809 11089851 -139693702 + (CA)n Simple_repeat Simple_repeat 2 43 0 234 298 0 0 chr11 11090287 11090344 -139693209 + L2 LINE L2 3208 3264 -8 240 35 0 0 chr11 11091790 11091819 -139691734 + (CA)n Simple_repeat Simple_repeat 2 30 0 610 318 80 29 chr11 11091873 11092112 -139691441 - MIR SINE MIR -10 252 2 26 0 0 0 chr11 11092182 11092208 -139691345 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 11092528 11092550 -139691003 + AT_rich Low_complexity Low_complexity 1 22 0 190 330 171 0 chr11 11092811 11092899 -139690654 + L3 LINE CR1 505 607 -970 504 312 42 89 chr11 11093272 11093676 -139689877 - L2 LINE L2 -37 3235 2851 367 293 249 9 chr11 11093699 11093928 -139689625 + L3 LINE CR1 636 919 -658 693 125 21 97 chr11 11093930 11094074 -139689479 - FLAM_C SINE Alu -10 133 1 668 325 183 32 chr11 11094091 11094620 -139688933 + L3 LINE CR1 934 1542 -35 2152 220 21 14 chr11 11094824 11095337 -139688216