[DIR] Parent Directory

This directory contains data generated by the Wold/Caltech lab as part of the ENCODE project.

This directory contains the subset of the Caltech RNA-seq signal tracks used in the ENCODE Integrated Regulation Tracks

Further information is available in the ENCODE Caltech RNA-seq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2011-10-21wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigPooled.bigWig  407M  2011-01-22  dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cell; submittedDataVersion=V2 - A better mapping technique; subId=3416; dataVersion=ENCODE Jan 2011 Freeze; grant=Myers; lab=Caltech; mapAlgorithm=TH1014; view=Signal; type=bigWig; insertLength=200; readType=2x75; sourceObj=wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigRep1V2 wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigRep2V2
      2011-10-21wgEncodeRegTxnCaltechRnaSeqH1hescR2x75Il200SigPooled.bigWig  283M  2011-01-22  dataType=RnaSeq; cell=H1-hESC; rnaExtract=longPolyA; localization=cell; submittedDataVersion=V2 - A better mapping technique.; subId=3464; dataVersion=ENCODE Jan 2011 Freeze; grant=Myers; lab=Caltech; mapAlgorithm=TH1014; view=Signal; type=bigWig; insertLength=200; readType=2x75; sourceObj=wgEncodeRegTxnCaltechRnaSeqH1hescR2x75Il200SigRep1V2 wgEncodeRegTxnCaltechRnaSeqH1hescR2x75Il200SigRep2V2
      2011-10-21wgEncodeRegTxnCaltechRnaSeqHsmmR2x75Il200SigPooled.bigWig  333M  2011-01-22  dataType=RnaSeq; cell=HSMM; rnaExtract=longPolyA; localization=cell; submittedDataVersion=V2 - A better mapping technique.; subId=3468; dataVersion=ENCODE Jan 2011 Freeze; grant=Myers; lab=Caltech; mapAlgorithm=TH1014; view=Signal; type=bigWig; insertLength=200; readType=2x75; sourceObj=wgEncodeRegTxnCaltechRnaSeqHsmmR2x75Il200SigRep1V2 wgEncodeRegTxnCaltechRnaSeqHsmmR2x75Il200SigRep2V2
      2011-10-21wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigPooled.bigWig  318M  2011-01-22  dataType=RnaSeq; cell=HUVEC; rnaExtract=longPolyA; localization=cell; submittedDataVersion=V2 - A better mapping technique.; subId=3470; dataVersion=ENCODE Jan 2011 Freeze; grant=Myers; lab=Caltech; mapAlgorithm=TH1014; view=Signal; type=bigWig; insertLength=200; readType=2x75; sourceObj=wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigRep1V2 wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigRep2V2
      2011-10-21wgEncodeRegTxnCaltechRnaSeqK562R2x75Il200SigPooled.bigWig  382M  2011-01-22  dataType=RnaSeq; cell=K562; rnaExtract=longPolyA; localization=cell; submittedDataVersion=V2 - A better mapping technique.; subId=3419; dataVersion=ENCODE Jan 2011 Freeze; grant=Myers; lab=Caltech; mapAlgorithm=TH1014; view=Signal; type=bigWig; insertLength=200; readType=2x75; sourceObj=wgEncodeRegTxnCaltechRnaSeqK562R2x75Il200SigRep1V2 wgEncodeRegTxnCaltechRnaSeqK562R2x75Il200SigRep2V2
      2011-10-21wgEncodeRegTxnCaltechRnaSeqNhekR2x75Il200SigPooled.bigWig  297M  2011-01-22  dataType=RnaSeq; cell=NHEK; rnaExtract=longPolyA; localization=cell; submittedDataVersion=V2 - A better mapping technique.; subId=3473; dataVersion=ENCODE Jan 2011 Freeze; grant=Myers; lab=Caltech; mapAlgorithm=TH1014; view=Signal; type=bigWig; insertLength=200; readType=2x75; sourceObj=wgEncodeRegTxnCaltechRnaSeqNhekR2x75Il200SigRep1V2 wgEncodeRegTxnCaltechRnaSeqNhekR2x75Il200SigRep2V2
      2011-10-21wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigPooled.bigWig  298M  2011-01-22  dataType=RnaSeq; cell=NHLF; rnaExtract=longPolyA; localization=cell; submittedDataVersion=V2 - A better mapping technique.; subId=3413; dataVersion=ENCODE Jan 2011 Freeze; grant=Myers; lab=Caltech; mapAlgorithm=TH1014; view=Signal; type=bigWig; insertLength=200; readType=2x75; sourceObj=wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigRep1V2 wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigRep2V2
    7 files