597 chr1 1679863 1679864 RIP_Alu_chr1_001_01 0 - pAlu1-1516710 NA NA SINE Alu Ya3 ggggtttcaccatgttggccaggatggccttgaactcctgacctcaggtgatccgcccgcctcagcctcccaaagtgctaggattacaggcataagcctc
cgtgcccggcttcatgtgaaatttttgaagtgaggtttctttgcatgacactttatttctcattagggaagcatgctagagtgaaagaaaaagaaagaga
gcacgaacgtcggaaacggcatcgagaagaacaggataaagctcgccgggaatgggaaagacagaagagaagggagatggcaagggagcattccaggaga
gaaaggtgagtcggctgggtcagttgaggactttataaaagggctgtggtagtgtgtcccatcctagaaatgaagaagaatttggcaatAGAAGTCACAT
CTGAGCCAGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCATGAGGTGAGGAGATGGAGACCATCCTGGCTGACA
TGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGAAGGTGGAGCTTGCATTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAGAAG
AAGTCACATgtagaagtcacatttggtgcagaagtggtagacatggaaacagcacagtgaacgctggacgaggctgaccaagagaactgtcctgagggag
tgagttttcactgcatctggaagtaagaacgggtgtgatttgattgagggaagacaatgaagggatcagaaatctgcatgtccggccgggcgcggtggct
catgcctgtaatcctagcactttaggaggctgaggtggttggatcccttgagcctggaggtcaaggctgcagtaagctatgaccatgctattgcactcca
gcctggttgacagagtgagactgtctcaaaaaaaggagaagggagatcctaaaaaccttgaaacagtctggaattcgggaccctggactcccaggactcc
tggccattagt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
617 chr1 4215512 4215513 RIP_Alu_chr1_004_01 0 - pAlu1-181289027 NA NA SINE Alu Yc1 taggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcac
agcagaagaaagtaccaccagagtgaacaggcaacctacaaaatgggagaaaattttcacctactcatctgacaaagagctaatatccagaatccacaat
gaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaagggaagacattcatgcagcca
aaaaacacatgaaaaaatgctcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttAGAATGGCAATCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATGGCAATCATtaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttactttgttggtgggactgtaa
actagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatataccca
aaggactataaatcatgctgctataaagacacatgcacacatatgtttattgtggcactattcacaatagcaaagtcttggaaccaacccaaatgtccaa
caatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgtagccataaaaaatgatgagttcatgtcctttgtagggacatggat
gaaattgg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
695 chr1 14458063 14458064 RIP_Alu_chr1_014_01 0 - pAlu1-93327698 NA NA SINE Alu Ya5 agtgggggccaatattcaacattcttaaagaaaagaattttccaccccgaatttcatatccagccaaactaagcttcataagtgaaggagaaataaacta
ctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagtgctaaacatggaaaggaacaactggtac
cagccactgcaaaatcatgccaaaatgtaaagaccattgagactaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcatcatgacag
gatcaaattcacacataacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcaaattggataAAGAGTCAAGACCC
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAGTCAAGACCCatcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaaaggatggaggaagatctacca
agcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattac
atcatggtaaagggatcaattcaacaagaagagctaactatcctaaaaatatatgtacccaatacaggagcacccagattcataaagcaagtcctgagtg
acctacaaagagacttagactcccacacattaataatgggagattttaacaccccactgtcaacatcagacagatcaacgagacagaaagtcaacaagga
ta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
773 chr1 24674118 24674387 RIP_Alu_chr1_024_01 0 + Yd6JX352|16745 ATCCAAGGGAAAGCAACACA CACACCTAGCAGCTCCCTTTAT SINE Alu Yd8 tcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgcgccactgcactccatgctgggtga
cggagcgaaactccgtctcaaaaaaaaaaaaaatcatatatatatgtattagaagtgcactgattaataaggaaagctgtttccaatatattgtcaaagt
ttacaaaactatatatacatggtaatctcaatcatacacataggttacccatacacatatccaagggaaagcaacacagcaaggtcttaacaactggtgt
gtctacatgatggcattgttagtttttgctgggagggggatgttcctaatttttgaggaatggtaaacacgcattgtttttatAAGAATATGAATATTAT
CCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGCAGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAG
ATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAGAATATGAATATTATttataaagggagct
gctaggtgtggtggctctgcctgtaaccccagctagtcaggaggctgaggcaggaggatcacttgagccccagagtttgagaccagcttgggcaacatag
caagaccctgtctctggaaaaaaaaaaaagtttttaaaataaaggtagctaggccgggcgtggtggctcacacctgtaatctcagcactttgggaggctg
aggcgggcagatcacggggtcaggagtttgaacattgtgaaaccccatctctactgaaaatacaaaaaatcagctgggcatggtggcgggtgcctgtaat
cccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagctga UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 60 452 166 NA intron
784 chr1 26173964 26174277 RIP_Alu_chr1_026_01 0 - pAlu1-25722767 NA NA SINE Alu Ya5 tcgacctcgggcggggtccagctggaggggtcctcacctcatcaaacatacaaggcgaaaatgaccagagtcagcccgcatatcaggatgggttttttat
ttaaggtacaactttccaggaagttggagagctccagaggactgcgtccatcgccctctccagcctcatttaattcaacaaactgtgcctgtggccctac
tatgtgcgccgtccctgtactaggaaaaaggtcaaagattaactagagaacccagagtaccagcgggtcccacaaaaggtgacaaattgaggcccaaaaa
taggactgtacttgggagctcagagcaggtgaggctgactgggggcattcaggacggcttcctggaggagaatatacgttatctccgagaaggaAGAAGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAGAAGGaagagcagagagaaaaggaacggcaacccaggcaaaggaaggaggtgcatgaaggatgcaggcttggaggtgcgaacctgt
gatgaaaataggcgaacttgtgtgtccttgcaggaaagggaggcagtggcaggagcctgccggctggcaggaaaggtttccttcttttctttttttattt
ttatttttattttttgagacggagtctggccctgttgcccaggctggagtgcaatggctcgatctcggctcactgcaacctccgcctctgggattcaagc
gattctcctgcctcagcctcccgagtagctgggattacaggcgcgcgcctccaagctcagctaatttttgtatttttagtagagcccatgttggccaggc
tggtctcgaactc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
794 chr1 27488270 27488583 RIP_Alu_chr1_027_01 0 + 19972 NA NA SINE Alu Ya5 cttctatatgagtacagattttttttaaatgtctttttaaggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggctgatgctggcaga
tcacgtgaggccaggagtccaacaccagcctggccaacatggcgaaatcccatctctactaaaaatacaaaaattagctgggcgtgttgacacatgccta
caatcccagctactcgataggctgaggcagaagaatcacttgaaccaggcaggtggaagttgcagtgagcagagatcatgccactgcactccagcctggg
tgacagagcaagacttcgtctcaaaaaataaaaaataatctgttgcaatgagcaagtattacttttgtaacttcaaagagatttTAAAAATAAATAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATAA
ATAAAAAAAAAAATAAAAATAAATAAATCtaggatattagaaatgggaggcaggccgggtgtagtggctcatgcctgtaatcctagcactttgggaggct
gaagcaggtggatcacttgaaaccaggagttcaagaccaacctgaccaacatggtgaaacccccgtctctactaaaaagagacttgggaggctgaggcag
aagaactgcttgaacccgggaggcagaggttgcagcgagccgagatcctgccactgcactctaacctgggggacagagggaagactctacctccaaaaaa
aataaaaaaggaaagaaagaaaagaagtagaaaataaatttcatgcaaatagcaaagcaaaaaaaaaaaaaaaaaggatatgatgtaagaataagcaaat
tagtagctgtggt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
798 chr1 27931949 27932250 RIP_Alu_chr1_027_02 0 + pAlu1-27480751|238884 NA NA SINE Alu Yb8 tgtaatcccagcattttgggaagctgaggctggcggatcacttggggtcaggggcttgaaaccagcctggccaacatggtgaaaccctgtctctactaaa
aatacaaaaagattagccgggcgtggtggtgggcgcctgtaatcccagctactttggaggctgaggcaggagaattgcttgaacccaggaggcagaggtt
gcagtgagctgagatttcgccaccgtactccagcctgggtgacagagagagactccatctcaaaaacacaaacaaacaaacaaacaaacaaaacccatat
aagtggacctgtgcagttcaaacctgtgttgttcaagggtcaacttattgttcaatgctaaatttattaaactctaatagctaataaaacttGAAATCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AGAAATCAAacctttgggtatttaaacattgtttacacatttaattaaatatgcttaaaattttaaagtgcaattaaagttttaggatggctgattctta
taaatacttcagatatcttaaagagcagacaaaacatacagaaacaatggtttactgggaagctggtgaggtttaagcttcagggcccctcacttgcaca
gcctcttccaagggtctacattcatacttacttttgtatcttactttgcattctttttcttaaagaaagccacccaaattatgtaagcttctggccacac
aaaatctagatcctcatgtcccatacttctttggatccttgctttatttattttgttatcctcctaaggcttctgtaccattatttatttatttattttg
a UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
800 chr1 28305594 28306043 RIP_Alu_chr1_028_01 0 + Yb8AC1026 TTGTCATTGTGGAGTGTTTGC TGCCATTTATATGTCATCATTTCTC SINE Alu Yb8 tacacatcgggtgtggtggtttacatctgcaatcccaactactcaggaagctgaggtgggaaaactgaagctgaccccaggagttccagaaaagcctggg
caatgttgcaggattccatttcaaaaaaattataccgcactttgggaggccgaggcaggtggatcacagtcggaatttgagactagcctgaccaacatgg
agaaaccctgtctctactaaaaatataaaattagccgggtgtggtggcacatgcctgtaatcccagctacttgggaggctgagccaggagaaatcgcttg
aacccaggaggcggaagttgtggtgagccaagatcgtgtcattgcactccagcctgggcaacaacagcgaaactccatctcAAAAAAAAAAAAAAAATTA
TACCACACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACA
AAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGA
GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
TAGCCGGGCGTGGTGGCACATGCCTGTAATCCCAGCCACTCAGGAGGCTGAGGCAGGAGAATAACTTAAACCCAGAAGGCGGAAGTTGCGGTGAGCTGAG
ATTGTGCCATTGCCCTCCAGCCTGGGCAATAAGAGCAAAACTCTGTCTCAAAAAAAAAAAAAAAATTAtacctaaaaaacttacaataagtacatagata
acgtgatcacttcttgagaaatgatgacatataaatggcaatattttctattaacaaatatttgttattattcttattttttgagacagggtctcactcc
accgcccaagctggagtgcagtggcacgatcatggctcactgcagcctcaacctccctagctcaagtgatccgcccaccttggcctcccaaagtgctggg
attacaggcctgagccaccacacctggcctcattgtgtaatcttttgtgtttgtcttcttcgttaccataaagcttttgaagctaattcatgttgtcgtg
tgtatccatagttcattcctttttgttgctgagcacaatactattgtat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 1077 775 NA intergenic
860 chr1 36143788 36143789 RIP_Alu_chr1_036_01 0 + 52475 CTGTGGAGAGAACAGTAGCGCAG CAGTGGTTACATTAGAGTGGTAGG SINE Alu Ya5 aaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaaggaggcctgccagtcatcaaacgtaagaaaagtttgtca
gagcagcgatggtgtgaggcagcttgctctagttagtggggttgggagtttttctggctcataatgggcaagaattgttcatgtgtacttttttttcctc
agctttcctttacagttagaaaacggccaaactgtggagagaacagtagcgcagtatttcagagaaaagtatactcttcagctgaagtacccgcaccttc
cctgtctgcaagtcgggcaggaacagaaacacacctacctgccactagaagtaatgccttcacactgctaattaataccctgttgAAAAGAATCATGAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAATCATGAACgataacttacctcatacagaacatttattttggaatatgaactgtttttaagttttaatttattctaaattttctgtaatgaa
ataacacgaaacaagttcatccataatcctaccactctaatgtaaccactgttaacattttggtatactatacttctttcagtcttcatctggtgtacat
tttacttaattatacttaattactgtagagctgtcttgtttactacttttttacttaacatattgaaaataagtggtttaatgaagttgattttaaattt
ttatttacatgtaattggcactaagtaagagctaaaaaaaaaagatatatacatgtagtacaaaacttttttccatttgtaggtctgtaatattgtggca
gg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intron
917 chr1 43526563 43526884 RIP_Alu_chr1_043_01 0 + 1438 CAGATAGTCTAGGACAACACCGTC CTACTATATGGGGCTACTGAGCAC SINE Alu Y tgttcttaaccatattgttcatggtataagtaataaagtagccacagaatggtaaatctccagttcactgggatttggtgtggtaagacccaacattgaa
tatggtggtaggaaactatgccttatttaaaatagtcatgttcacagaggtggtagaatagctcatgcatcagaaatatcaatcaagatcaatcagaaat
attaacacaagaaaaactatgaaacagtttagaggatgtttcattatagattaaagtgaaaggaggtggagggatgttgtggggaaatgcaacatacctt
ttaggcagatagtctaggacaacaccgtcctgtagaaatctaaagcaagccacatgtgtaatattaaattttctgatagccacatAAAAAAATGAAACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATGAAACAAatgaaataaaatgtaattatatatttaacccaaaactcccaaaattttcaaaatgtaataaaat
acaaaacatcgtgagatatttaacattttttttggtaccaagtctttaaaatctagtgttgtattttacactgatagcacatcccatcttggtctagcaa
cattgtaagtgctcagtagccccatatagtagtctttaccatatagagcagtacagatctaaagtaatttcaagtcaagacacacaatcctgggagtctc
agccaaaagttaagcttttttttttttttttttgagacgaagtctcgctctgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctc
cgcctcccgggttcacgccat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA promoter
931 chr1 45464802 45464803 RIP_Alu_chr1_045_01 0 + 14332 NA NA SINE Alu Yb8 taaaaatgcaaatctgactcctctctcctccacctaaaatgagtcagcagcctagggctcacaccctgactgacccagcaggccctgctgacctttccag
ctaaaccaactgctcacagctccttgagcactgcagcctgcactgggctccacctttgctcacactactcttgggactggaaagaacatcgctacggttg
attcccctcccaaacctgaagaaaaggattcatttctaggacgaagattaccagctgcttcctccaaacagcctttcctgatccgtctcccaattagaac
tgatagctcccatggatgggtgtggtggctcacgcctgtaatcccagcactttgggaggccaagatgggcagatcacttgaggtcaAGGAGTTCGAGACC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GGGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGGAGTTCGAGACCgtgaaaccctgtctctactaaaaatacaaaaattagttgggtgtggtagcaggcacctgtaatcccagctact
tgggagactgaggcaggagaatcgctttaatccagttgtgggagattgcagtgagccgagatcgggccactgcactctagcttgggtgacagtgagactg
tctcaaaaaaaaaaaaaaaaaaaaaaaagaactgatggctccacaattcatatcccacaaaactcagtacaggcatttcacacacctgtgacactggaga
gtcctcatcatttttttcctttccctctaccctgcaccccacaatggaaggtctccaggtcaagaactattcctccctccagtgaagcctggagtggaga
atgttcacccaga Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
936 chr1 46078140 46078456 RIP_Alu_chr1_046_01 0 - pAlu1-45752472 NA NA SINE Alu Yb7 acatgatggattaaaaatttaaatttaagacctgaaactataaaaaccctaaaagaatacctaggaaaaactcttatggacattggcctaggcaaataat
ttatgactaagacctcaaaaacaaatatgaccaaaacgaaaatggacaaatgagacttaattaaactaaagagcttctgtacagcacaagaaacaatcaa
cagaataaaaagacaacccatagaatgggagaaaatatctgccaactacgcatccaacaaaggactaatatccagaatctataaggaacttaaatcgtaa
gaaaaaaacaaataaatctgctaaaaagtaggcaatagaaacgaacagacacaaaagaagacaagtgaccaacaaactcatgaaaaaAATATCCAACATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATATCCAACATCactaatcatcagagaaatgaaaattaaaccacaataagataccatcttataccagtcagaatggaaaatga
cagatgttggtgaggatgcagagaaaagggaatgcttatatactgttggtgggaatgtaaattagttcaacccctacagaaaatagtatagtgatttcca
cagaactaaaaatagaactaccatttgatctagcaatcccactactggctatctacccaagggtaaatcttttttttttttttttttttttgagagagag
agagtctcgctctgtcgcccaggctggagtgcagtggcaccatctcggctcactgcaaccactggctcccaggtacaagcaattcttctgcctcagcctc
ccaagcatctgggact UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
945 chr1 47254255 47254552 RIP_Alu_chr1_047_01 0 + pAlu1-46743171 NA NA SINE Alu Y ttcttctcacttttcttcatagttcatctaattaaagttttgtcaattttgttaatcttctcaaagaaataactttttgtttgttaatttttttctattg
tttttcctgcttttattttatttacctcagctctaatctttatcatttccttccttcagtagctttgggtttcatttgcccttctttttccagttcatta
aagtgtacagttaggttattgatttaaggaatttattttttaatgaagacatttaagctataaaaatctcattaagcactgcttttgctgaatcccataa
cattgggtaagttgttttcattttcatttgcctcaaaatattttctaatgtcttttatgatttattccttgtccctttggttgtttAAGAATGTCTTGTT
GGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCGGACCTTGCAGTGAGCCGAGATCGCGCCCCTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAGA
ATGTCTTGTTtaatattcatgttttgtgaattttcccgttttacttctgatattgatttctagttttattctatggagaggtatttttgtatgatttcaa
tctttttaaatttattgagactttttttgtgacttaccatatgatctatgctaaagaatgacccatgtgtacttgagaagaacatgtaatctgctgttgt
taggtggagcttttagaacatgtctgtttggcataattatagtgttgttcaagttctctatttccttattaattttttgtatcattgttctgtccattat
tgaaagggatgtagtgaattctccaattataattttagaactgtctatttctcccttcaatgctgtcagcttttgcctcatatactgtggggttct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1013 chr1 56113314 56113624 RIP_Alu_chr1_056_01 0 + pAlu1-55758902|9984 NA NA SINE Alu Ya5 ccacccccatgattcaaattatctcccacccggtccctcccacaacacatgggaattatgggagtacaattcaagatgagatgtgggtggggacacagcc
aaaccgtatcataacactaatgcctagcacaacatatggctcattttatcaataaagactcattgaataaataaattcatgagagagaaaaaaacagcta
ggacaattccaggggctgaattgagcctggacattcatcactcaagatatctcaagggagtgcagccaggaaggaatcattgttgaaaaactgaaggtca
aagtcaataaatccagaccacatgtcttgtccaaagacagaatatcaacctaagaatgagttggcaaataaagagtttggtgagtttatAGAAATATAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAATATAGGacaaggtacaaggaatggctgaaggagagaggttgtcctgttcatttgggctgctgtaacaaaataccttagatttggt
ggcttataaacatcagaaatgtattgctcccagttctgaacactgggaactccaagatgaaggtactggcagagtcagtgtctgtggagggctcacgctc
tggttcatcattagcactttcactgtgtccttacagtggaaggggcagggcaactgtctggggactattttataagggcactaatcccattcatgagggt
gtcaccctcatgacctaatcacctcccaaagtcctgacttgataccatcgtcttggggattaggtttcaacatatgaattttgaggtaacaaacattcag
accatagcag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1019 chr1 56954646 56954967 RIP_Alu_chr1_056_02 0 + pAlu1-56600233 NA NA SINE Alu Ya5 aacagcatgaaacaaaatgaccacgagccctcattttgatcactagtcaaattttaaaatatctttgtttcaaatttcagagtgtcttctttgaggtgca
ctaacatctgaccccatttattttacggagagggaagtgaggtcaccctctgaactagtggtaggcttttaaataggagcctggtctcctgactgcctgt
tctgccacctacagcattcgaccttgatacagacaaacactgctattacaaacaaacaacaaatctctgccatttattaagagcttacaacatcggaatt
ccactttgctgaattagagatatttatctcaatcctcacaacatccctgggggaaggatttgatttcactatttcctatattAGAAAATAGAAGGCCCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGG
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAATAGAAGGCCCAGagatatcaaataactttcccaggatcacacagctagtgtgtggagctcaaactatgaatcc
aaggttatctgactcctaaatcaatgcccttaacttcatgtaacatactccctggatcttctaatttttaattcattcaatttaaacacactttaattat
gcagctggtaagaaagaaatattagaccatctctctgcttttgaagaatttataatttagtcagggaaatgagatacacccagggaaacagaaaatcaca
aaaatagactggatatacttgagtcttaagccgagtgctgtctaagtccattctattcttcagccaacatttattgaacaactattaaatgctgtatgcc
cccttccccatatacacctta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1027 chr1 58055244 58055556 RIP_Alu_chr1_058_02 0 - pAlu1-57700822|Yb8NBC461 CCAAAGTCATTCTTCATTCTGC GACACCCGAAAAGACTAAAGACA SINE Alu Yb8 aaatttgtttccacgttacttgcaatgttgacaaaaggcaaacaatcaaaatttccaaaaataagaaaaagattttactgaagttcttcacacttaaata
atgcagtcattaaataaaacatatttctaaagaatttttcatgttgttattgacatatggacataaagataggcttcagagctttatatacaacaggatt
ccaattttgttccaaacatatgtttaggtgtgtaattatagacacccgaaaagactaaagacagtgcgttaagatattaagagtgaacctctctacatag
caggataataagggtttttatttttctctttatattttgttcttctaaatctgatacagtgatgagtatgtgtaacttttgtaattatAAAAAATAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGACTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAATAAATCaattaggatttttaaaagatgaagcagaatgaagaatgactttggactaggactgactcaggatggagagaattat
cccaagtgcttcaggtgggaacagccaaagggtgtgtgtgggaatgtcctagaattgtgtcatatccagagagggagctgcagggtggggaacagagtgt
atcataatggtcaagacttacgcaaactcagggcgcccacaacaatttccttagctgggacagagggtacaaatcttaactttagttggctttcaaaact
aggcaactgaactgattaaaaaattcaaaactggggcagtgggttcaagtcctggctcttctaataaccagctctgtggctttgggcatgtgtcttaacc
actctgaacctc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening|Genome comparison NA 58 529 205 NA intron
1033 chr1 58771647 58771962 RIP_Alu_chr1_058_01 0 - Ya5ACA618|pAlu1-58417239|Ya5NBC347 GCTACCCTCCTATGAGTGACAGA CATGCCCATTGCTTTACGTT SINE Alu Ya5 tgactgtcaacaaatggggctgttctgtttattaattgctgagcagcaaacaacaaaactggcttgaacatactaacattttactatatctcaccattta
tgggtcataaattcaggcagggcttagcctggagacacttaggcttcatagagctttgactggggctactcagtggtattcaggtggcatctggtctggt
ctgaggatcctggatgtcatcactcacatgcctggcaccccgctggggacagcgggagactgggctgggctcagctggacccctccccctctccatgtgg
tctctccagtggggtagatggactcatcccatggtgcctcagtttgctaccctcctatgagtgacagagaaattgtgaaatgaaagataaTTCAAATGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGATAATTCAAATGATttgaaatgtcatcttcagtacacataattaacgtaaagcaatgggcatgcaatttttaataacaagtcatttgtt
tctctctatgcccaccaaatagatgtgtccatgatttttttaagtatcagtttgaagaggtgctactctgccatcctgtccaaggtgccactgtcactac
tcaccctgtgggagtgagttatggggctctcttcctttctcaatagcccacttggtctagagcaccaacctgtctctctcatggtctcccagcaacctcc
aatctgatcttgctgcttccagtctcacctcctgccactcatcctccatatagttttcctgcgatttttctgaaacacaaatctgctcagactattccct
tgcctaaattcaatt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening|Genome comparison NA 55 447 104 NA intergenic
1058 chr1 62102623 62102959 RIP_Alu_chr1_062_02 0 + pAlu1-61748210 NA NA SINE Alu Yd2 tggtttttgtgaaaaagagattcttaaaattattattaaaaggcttgtacatttaaagtagtataactttagtcaactattttctggaaactctgggaat
attacatttaaataatgctcacttatataaaccaatcagaaagagattctttattttgagagatttatatctaatttattaatatgctctgaaggtagga
aaatatttcacactcaaaatgaaaggtaaggacttttctttctccagtgcagatacacaatgtattctgcttctgtcctgcagctatagccatatgtcaa
atgtagacataggaatgtaaaaccctactggttttacgttaaagagctgttctttccagtaggacccaagacatgttcttgtacaaaAAGACAGACAGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACAGACAGGCaaacaagaagactaaaaaatgcattctctgttgtctctcaatcaatcgaga
atagatctttatagaagcagcataatatagattctcatcccaacaaataactctaaatggtcagaccataaaaccaaacttcatttattcctactatcag
cgaggaattacaagtacacatcagaaccaaacttggtctcatatcagaaacaaaatcatagaactggaaataaaaatcagagaaactgtcaaaaaagcaa
agtttgttgccacttggaattaactgtgggtgccaaaaaatcatgtaaatgggcttaaacagctcatgaattgcatctctgaggcatcacaatttaattg
gttctggtaggtgagtctgcttgagcatctctgtgg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1064 chr1 62863849 62864179 RIP_Alu_chr1_062_01 0 - pAlu1-62509441|Yb8AC1015 CCAGGGAGTTATGATGACAGG TCAGCATGATGTTTTCAGAGAT SINE Alu Yb8 tttttctttctttccagcgttctagcactttttttttcctgaaggggcaaaatagcaagtgtttaagagcatgggctctactctcagaccccgacatggg
ttcaaatcctgattggtattttctagcttgggactttggccaagttgttgggccaaatttccgtttcctcgtctggcaaatgagaataataataggaccc
agctcatagtgttgttgtgaacattaagtggcataatttgtgtaatgtgcgtaggatagtacagggcctatactacctgtcatcaaacacttgtagtaat
tagtttctcccagggagttatgatgacaggaaattttttttttttgtaaaataattaggtcttacttctgatgatgatgtcattaaaaaatGTTATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTATTACTtgacatgtattcctagttttaatttctcttattagaaccagaagtttatctctgaaaacat
catgctgataaagtaagtgcactttagagagttggatatgaaattgtatgtctattagtggagttcgccaccagatgggataggacaaaccacaagagaa
aaagagaatcagttgtgcaaaacaacacaaaatgcaaataagaacagctttctaagaagttataaaattaagataatgtgaatgaagaaatgtgcactta
ttggacagacaggaggtggatatggtagtgattggtgattggacatgcaaggtgaggcggactgaggagtctgggatgacatcctaagttgggcaaccac
gtggatgatggtggcagtctttggggtaag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Genome comparison|Candidate screening NA 60 499 165 NA promoter
1066 chr1 63173972 63173973 RIP_Alu_chr1_063_01 0 + 11594 NA NA SINE Alu Yb9 ctgttggggtcttcacattccttcatctcattaatatatatgggagtgtgcttccgctgcttcgctccctgatgcagactgtcctcaggttggcaaggag
tgggcaggccctgcagagtcccgcctgaggcctggcgaggctcagatgcaagctcaggatccaagcaggtatcttctttgtaatttccaatgggttttct
ttgacttgagaagagacccttcgctgacctctcaccatgggtcaggcctgctgctaagcaccttcttatgctattttgctttatccttaaaacaaccctg
caatgtaggttctattggcttctctaagtcacacatgtaacaatttgctcaagcttactcagtacagctggcattctaattcagccAAAAGGGAGACATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGGGAGACATGaacaaacctctcgcaatctccaacatacttgctcttttagaaaatttgaggccaccatcttctacattaaaaacaaagca
aaccaggcacaggggcttatgcctgtaaaaatcccagcactttgggaggccaaagtgggtggatcacctgaggtcaggagtttgagaccagcctggacaa
gatggtgaaaccctgtgtctaccaaaaatacaaaaattagctgggcatggtggtgcctgtctgtagtcttagctactcaggaggttgaggcaggagaatc
gcttgaatccaggaggcagaggttgcagtaagctgagatcatgccactgcgctccagcctgggtgacagagtgagactccgtttcaaaaaaaaaagataa
aaaaat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1087 chr1 65847741 65848064 RIP_Alu_chr1_065_01 0 + HS4.14 AAGAGAAGATCAGTAGG TATGGCTCAGAATACAG SINE Alu Ya5 tgtgaactctaattaaaagaaagttaaattgcctataataatatgagacagagattgtagggcaaagaatattaccagggataaagagagaaatgccata
ataataaggacataaactccttaagaggatataacaattctgaatatgtatatgcctaaaaccagcttcaaaatacttgaagaaaaatggatagaattgc
atggagaaatagacaaatccacaattatatatgaagcactaataatcatttccaataattgataaaacacataaagagaagatcagtaggtatataaaat
atttaacatcatcaagcaactattcataattacatttataaaagactccacccaaacagcagaatatgcattttaaaggatgcacataaaacATTCACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATCCCACCACTGCACTGCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAATTCACCAatatgggctgtattctgagccataaaacaaatttcaatacatttaaaagaattcaaatcatacaaagca
agttctttttattcaatgggattaaactacattccaatcaccaaaaaaatggaaatttcccaaatacataaaaacaacatagtacggttataaataactc
atggacaaagatgaaatcaatagaaaaaatgtaaaatattttaactgaattaaagtgaaaacatagtatatcaaaacttgtgagatgtagttaaagtact
acttagcaggaaattgacggcattacgtatttaaattagaaaaggaagaagctgtcaaataaatgacctcatcttcaatctgaaagaaactacaagagca
catgaaatatgaagtatgctgaa UCSC - Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL, Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11.PMID: 9360633.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
Library screening NA 0 0 0 NA intergenic
1088 chr1 65975944 65976263 RIP_Alu_chr1_065_02 0 - 14541 NA NA SINE Alu Yb8 taaataagaagtactaatatttttcaaatgcattaagataacttgaaaaaaaaatgttccatagagtaaacgtcacataccaagatttttgtcttagact
ctacagacagggtatgatttgacatttaattctgtaattacagtaatattaattaacttaatttaaataagctatcttgaactaaggtttaaactatgtc
tccacacctaacagatatatattacagggaaatacaatcaaactagtattttcaatgatagtaatggataatgtggttgaggatttaaactagagtgttt
ttaaaaagccgggtgcagtggcttacgcctgtaatcccagcactttgggaagccaagacaggtggatcacttgaggtcaggagttcAAGACTAGCCTGGC
ACGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGACTAGCCTGGCcaacatggtgaaaccccatctctactaaaaaaaatacaaaaattagccaggtatggtgttacacacc
tgtaatcccagctacttgggaggctgaggcagaagaattgcttgaacccgagaggcagaggttggagtgagccgagatgcaccactgcactccagcctgg
gtgacagagcgaaactccatctcaaaaaataaataaataaataaataaatttttaaacatttttaaaattaaaaaataaaaataatgcaaggggcatccc
aaggaggactgagaatggtggcaagagggaaatggactgcttagtgacctctaggctggaggaacagtagagcaatagagcagtggatgtcttccaactc
tctattcaacagcagatta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1095 chr1 66913243 66913557 RIP_Alu_chr1_066_01 0 + pAlu1-66558828 NA NA SINE Alu Yb7 tctggtaaccaccattctactctctaattctataagatcaacttttatttttatgttattttattttattttattttattttatttagttttttgagatg
aagtctccctctgttgcccaagctggagtgcagtggcacgatctcggctaatagcaacatccacatcctgggttcaagcgatcctcctgcctcagcctcc
caagtagctgggattacaggcatgcaccatcatcctggctaatttttgtattttcgatagagacggggtttcaccatgttggccaggctggtcttgaact
cccagcctcagatgatccccgttccttggcctcccaaagtgccactgtgcccagccaagatcaacttttaaatattccacatAAGAGTGAGATCGTGTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAGTGAGATCGTGTGGtattggtctttctgtgcctggctcatttcatttaccacgtttttaatgcattataattttttattaaa
tatgttcagattatttttcttcaaatgaaggaagttgtactttaataaaaatcaggacatctcaaacttgactgtatttctcaatcaaatgctggttctg
aattgatgctaaaaagaaatatatgtgtatacatatttaaataatataaatatttatttataatatttacatatacaacctagatacatataaaacctat
acaatctataacatataaaataacacattatattcataaatataaatatttatacaaatattttaaatataaatatttatacaaatattttaaatataaa
tatttatacaaata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1101 chr1 67725894 67725895 RIP_Alu_chr1_067_01 0 - pAlu1-45077537 NA NA SINE Alu Yd8 gcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaaatattttcaacccagaatttcatatccagccaaactaagct
tcaaaagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcttgaaggaagcact
aaacatggaaaggaacaacaggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaa
taaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaatgtaaatggactaaatgctccaattaaAAGACACAGACTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGAAGGC
GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAACAAACAAACAAACAAACAAACAAAC
AAAAAGACACAGACTGGcaaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagacacacataggctcaaa
ataaagggatggaggaagatctaccaagcaaatggaaaacacaaaaaggcaggagttgcaatcctagtctctgataaaacagactttaaaccaacaaagg
tcaaaagagacaaagaaggccattacatcatggtaaagggatcaattcaacaagaagagctaactatcctaaatatagatgcacccaatacaggagcacc
cagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagacttcaacaccccactgtcaactttagacaca
tca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1115 chr1 69519025 69519332 RIP_Alu_chr1_069_01 0 + pAlu1-69191628 NA NA SINE Alu Ya5 ccaatgcccgtacttccattgtatctagggagtaactagcttgcttttgattttacaggctcgtaggcagaaggggcttgctttgtctcagatgagactt
cagactatggacttttgagttaatgctgaaatgaattaagattttgagggactgttgggaaggcatgattagttttgaaatgtgaggacatgagatttgg
gaggggccgggggcagaatcatatggtttggttgtgtccccatccaaatctcatcttgaattgtagctcccataattcccacatgtcatgggagacatct
ggtgggaagtaattgaatcacgggaatgggtctttcccttgctgttctcatgatagtgaataagtttcatgagatctgatggttttatAAAGGGGAGTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGGGGAGTTCccctgaacacactctcttgcctgacaccatgtaaaatgtgactttgttcctccttcaccttctgccataattgtgagacct
caccagccatgtggaattgtgagtcagttaaacctttttcctttataaattacccagtcttgaacatgtctttattagcagcgtgagaacagtctaatac
agttggtgtcatgcatggagctcatctgtgatcccctggacactgcaaaggaaataagactcattccagattccgagtattagtggaaagtagctcctaa
gacactaatagatttttttttcctctaaattctcagcaattgtctgccatggatgacacttgaagtttaaatgtttcacagtctgatgccaagtagagct
ggtaaag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1122 chr1 70480148 70480455 RIP_Alu_chr1_070_01 0 + Ya5ACA589 CATTGCTTGAGCATGTGTCC TGAAGCTTGGAGCCCAAATA SINE Alu Ya5 tcacagacaaggcaaagtgagttggtattcttggtttccctagacaggaaaaacagaaataaaacatgcctcacatgctgcatgaaaataataactaggg
ttacatagaatttatcatcaaaattaataaatctaagaatgaaagtgacactactgacaattctgccaggaaaacaggggtgagccagagcaaagaggga
agtatggttgccttatgtatcaagaagccctaaaaaagtaactcatcaactcacacaggggcggcgggggggcggggggctgcctgttgctttatagctg
aattctagcttttagtccactcccagaagctagaattcagctttactattaaataacacctatcattgcttgagcatgtgtcctAAAAGAAAATAGTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAATAGTATTaaaagggactcttcccctatctctataagatgtgggctcctgataataccaaaaaggaacagatcattttatatgta
agtgcactatttgggctccaagcttcagctatcagggaatgttatgctctacataaaagaagaaatgggctaaaacagtcttctgcctccattccctgct
tgcccatcataggtgaaagtggtagtgggttgccaggagtggagatgaaaaggtgagtaaagagatgcacagaaagacagataaagaaagacaaagacag
actgacatggtgacctttgagattttagatctagcgatatgtaaaattagttatagaaacttcccagttatataaattaatacagcctatttttatttca
ttcgtgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 464 141 NA intron
1124 chr1 70658226 70658541 RIP_Alu_chr1_070_02 0 - pAlu1-70330824|Yc1RG100 ACTTCCATGAGCTAGTGGCTGTA GATCTCTAAACGATAAAGGCTCAC SINE Alu Yc1 tttagaaaggcagcaaaaattatattttggcttttactctagatgcttagcatagttaaggcgacagttcaagcatattaagtgaaggtagttaaaatgt
aagaacaaccatcacaatctcttgcaacctaaatacactgtttaatgcttacatggaacaaaaccagtgtttttaattgacattttacacacacacacac
acacacacacacacatacacagaattttttaaaaaatcaaaggcaatcattctaaacgtactatggtagcatgttaaaaatgtaaataccaacgcataat
tttaaagaacacctcaaatgttctataattttatctttaaaaatttaaaggtagtatagatctctaaacgataaaggctcacttAAGAAAACATAACCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAAACATAACCATaataccactatcacaaaaaaaattaaaaacaatgtctttattcaatcatgatttgttttttaagtctcc
actctcttatacagccactagctcatggaagtgcccaatcactgtgtcccaaactactggactttcagaagttttcatgttgaggaggtaacagtcagtc
tctcctcttctctgacaagttctccaatctgttcaaacctcagttcagtattacctgctctataaagacttccttaattctcccaaacgcagttagtcat
ctcttcttgagggccttcatgatacatcattcatatctctagcatgtatctaaatatttggtattataattattcatttgattgtctttgtccccaaatt
taggcatgcctttaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening|Genome comparison NA 60 474 143 NA intergenic
1130 chr1 71453353 71453650 RIP_Alu_chr1_071_01 0 - pAlu1-71125971|21214 NA NA SINE Alu Yb8 cctgagaacccactcactttcagaagaacagcagcatgggggtaactgcccccatgattccattacctcttaccaggtccctcctatgacacatggggat
tatgggaatgacaattcaagataagatttgggtggggacacagccaaactgtatcagctacattgaacaaaatacctttttaaaatatctaaatgttatg
atgtgatatgatattattttgtcatgtattaactcaggtttatacataaagttttcaccagatccttggtaactacagccaatgttagatacaatattta
taatttcctaaataacatcccttctatgtaattaattctataaaaataaatgcattgatccagtaagaacagaacttttattcagttAAGAACAAGGAAC
CTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
AACAAGGAACtctccagagagtttagaaatcagggttaaaggcctcaaagtcatattaaacaaagtataaagtaatgtaacagactttacgttaaacatg
gaacattaaatctgtacatatatgtccatattatctggaaatcctactaaatgattgtaaaagaagaaaaaattttataaaataaagataaaatgactaa
gaaaaaaagacaacagccaataagcgtgccaacaatatttcagaaggtaagatgcaacaagatggctagtaactgagtataatctgtgttttctgtggtt
tcagtgactattaaaggaaaggagtgaagttggggtacaaaaatcaaaagaagcaagctgattcataccactaacaccataaggatttaggccttta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1162 chr1 75723902 75724216 RIP_Alu_chr1_075_01 0 - 55223|pAlu1-75427689 NA NA SINE Alu Yb8 gatcctcttcagacatttttataacaagttagtatgagtttattttggtgcaaagtttttaaaatccatgcatggttctttttttcataatacacacttt
ccatgaaccttctgaagacccttaatataatcaccagattcctaggtaggagttagacattttcgaggactgattaaggagcattggaacaagacagagc
tagtcttcgattttagttagaagtttgtggcaagacttagaagtttcaaagttttacaaagtagaaaatggttgagtaacatagaatgtcggctgtaggt
gtccttaacatgttacattggaaatgtaaaaattaaagaaaaatgcgattaaaatttaaaaataggtttaaagataccacttttAAAAATTTTGAATTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAGGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAATTTTGAATTTGaacagtcttatgaagaataaaaatacaaactaaggagaagaactttcaaaaaaagaatgggctgggcacc
ttggctaggagttgtaaccccagcactttgggaagctgaggtgggaggatcacttgagcccaggagttcaagaccatcttgggtaacatagggagacccc
atctgggcaaaaaaaattagcttggtgtggtggcacacacccatcatcccagctacttgggaggttgagttgggacgaatcacttgagccgaggaggttg
aggtttcagtgagccatgcttgtgctgctgcaatccagcagcctgggtgacagaacaagaccctgactcaaagaaaaaaaaaaaaagaaaagaaaaaaga
atggttaattaact UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1171 chr1 76812396 76812670 RIP_Alu_chr1_076_01 0 - Ya5ACA975 CCAGAGGCAGACCAACATTT TAAAGCCAGAGGGAAAAGGC SINE Alu Ya5 caaagatgactctcattttgagatcatttccaaatatggatctcttatagagttggatagataactataagctgatttgttaaaagaaaaattatccaaa
tttgacattcaactgcaagagtgttgagatttgcagaaagaaaataagaggagagaggaaagtaaggaataaggaaggaagggaggaaagaaggaagact
tctttgttctatgcagcttatgtgctaacccaactttgttaatatgtctgacacagcaaaaaaagaaatatatgtcagcatcagatagttaatatggaca
aaacaaattccagaggcagaccaacattttctcttgttattgtttatagtagtattctggatatgtttccgacttggatatcaagtatattAAAAATCCC
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA
TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCataccgccttttccctc
tggctttattaacatatccttacttgtcctgttgtaaaacaaactgaaatatgccaatagctctttgccattttgtaagctttattctaagacacaatgc
ttataaataaagcactataatgccataaaaactctcaacaaacgtacaactgtgcatttacactttcttctaaaaatagatgaagattatgggttttaaa
atgaatgagaaactacagaaaaaaaatcatgggaactcaggaaaataagtgaagcaaaaaatgtaccatatgtaacagaaatgggtatttactcagtaac
agtgacaacaaagctaaacacaaggaaattagtactttgtagattaggtaacaaaaagctataaaattgcctcg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 399 116 NA intergenic
1176 chr1 77477015 77477016 RIP_Alu_chr1_077_01 0 + Ya5ACA641 CCAACTCCAGGCTTCTTTCA TTGTTCTCCTTTGCCCATTT SINE Alu Ya5 tccatcaataccctcccattccgctgctcctcctttcctgagaaataggagtactgttaggtttgttatatattcttccagacctttttctatacttaca
tgcatacatacatgtatggacacatgtgcacatgctcatatacaaatgcattctaaatttttataatgacttttccaagttatatcaatgttgaatgaca
gtatctttttctacagaccctttccaaccagatacgattcatgtttaaaatttttgcaaacctgatgagtaaatggcattttgtgttttaaatttgcatt
tcatgggttactattaaggttaagtatattttcatacactcattggccatgtgtatttcttccttatgtgaattgcttgttctccttTGCCCATTTTTCT
NNNNNNNNNNTGCCCATTTTTCTacagactttttaatctttttcttatttatttcaaggagcatttaacatattacagatatcgtattaaacagtattaa
gtaaaatatgatgtcagtttatgcatcacatgaaagaagcctggagttgggcagttcacggccaggggtagctttacaaaacatttttttgaatgttccc
attaacggttttggatcacctattgtgctagaatgtctgcctccccttcttaggtttcctctcccaccataagtccagaaactctggtgctcagtcagct
taaaggcttggttctaattgttctggctttgaagagagaaaaactggaaaatatctgatgaagttttgttattgctgttgctaccacattatattgctgt
tgaaagcggg Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 471 151 NA intron
1182 chr1 78255611 78255916 RIP_Alu_chr1_078_01 0 + Ya5ACA645 TGAGCAGGAACTTTGCATTC CAGATCAGTTCTTCACGGGAG SINE Alu Ya5 taaggatttcattgtacaatgaaaaacatcattaagattatatctactgaatcagtcattttccttacgttgtgtgataccttgttacgagtttactttc
caaatcttttttgatttagtttagtttgtccgtcagagagtgttatattttaaaaaaaagttaaatgctgcctttcactgcctgttgtgtagcgtactta
gattctggaagcaaatatttcttagaggagcattgataatatggccacttcactgttagttttattgttttcatatgagtatgagtgagggtatgaaagc
tcacagtagcttcttaaggttccttctgacttaaatgttcattatcttttgatgagtgaatgagcaggaactttgcattctttagaaaCTAGTGTATCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAACCTAGTGTATCACtttcttattttgcagttcaaaatataaaatctttgaggatgcttgaatttctagacctttatcatatacttagaggtatattt
gctgatagttgtgcattgatactgtgatagcttcttattctcccgtgaagaactgatctgaagtcatggagctttagttacctgctgctcttattccacc
ttgcagtggctatcacattcctacaggttttcaacacagcttcccatgaagttccattcactgaaagatatagctggctccattccttacagaaaaaaga
aactaatgccctgcttgccaacttttggctgtctagaatggaatgttattctgcacgggaggaagcacgatggaaaagggttcttctacctgcaggaaat
ctaat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 500 183 NA intron
1188 chr1 79113547 79113851 RIP_Alu_chr1_079_02 0 + Yi6AH97 TATTGTCAGCCAAAATCCTC CCTCATATGAATATGGATGGA SINE Alu Yi6 tcaatagctgaggcaaaccaccatggctcacgtataactgtgtaacaaacctgcatgctgtgcacgtttcccagagttaagcaaaattaaaaaaaaaaaa
acaaacctactttaaaaaaatctctatttttcttcctcacacaatcacaaattttgtctcatgatgaagaatatgatggattattgaggaagaaatatta
aaggaactgcaaatatagtgactttgctgtataaggagtagtaaaatcagagctcttttgtatattttcattagaatctcaacaatttcagacagtaaca
aaagttggaggtaagacaaggacccagatattgtcagccaaaatcctccccaggtatttataacagaatggaaatctcaagtAAGAATATGGATATTCTG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAGAATATGGATATTCTGtatactgtacatacatcaaatgtttttataggaaaccacatgttacatgtacatatgacataatcaaatgcatgataa
atatttattgcaaattcattgatatattgtctgttagattgttaaagtcctaccatttgaatcatatgcagcttttctctttggaaatatatttatgtag
tctccatccatattcatatgaggatgaatatgtttcatgttatatgaatcaaaaaagaaaactttgagagctgaaacaaaaccatgaaaataaaaaaagt
gaaattactttaatcaatatacatcataaatatattagcttagagacaatttcatccatcattattgtgttttaaattatttataacaagtagagtgaac
attc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 55 595 273 NA intron
1194 chr1 79826206 79826510 RIP_Alu_chr1_079_01 0 - Ya5ACA647 ACGTAAGCCTCAAAAAGGCA GGCACTGCAGATACAGTGTGA SINE Alu Ya5 aagcaagtcttttgagacatctggaaatcaagtcagagcaaattaccataaattatttatatatttagctatgtaagaatgtatttcagtttttggaatc
actgtggtttatctatttaccaatagaaggcaatgaaaacaggcatgttttgtctgctatgtacatcatctagaattaaaacaaaagtcagttttactga
atagggccattcatgctgtatactgtacaactcctaaacatactattcatgtaggccacaatataaataaatggtcatcctctttcctgaatctgtacaa
ccatttttggtgattatgccagattcagcagaaaaattagatattttaagtcagtgtttctagaacgtaagcctcaaaaaggcaactAAAATCCTTTTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATCCTTTTAGttcacactgtatctgcagtgccgatactaatgcttaggttatagtaggtgctcaattaatatttagtgcattaataaatggta
aaactaatggcattgaaatcaatagtagtgattaatttaaaaaaatagaattctgacttccctcctgatttgctaagtcagcatatcaagatgggcatag
agattaaaagattattctaagcataacattttggaaccagcattgttgatttcacatctagctacaagactaaactggcatataaaattcaggatgtata
cagggaaagcaccaattctagtcttcaatgtaattctcaagtggtggttttctggtaagtttgtagacaataatacttaggagaaaatgtgtataaaaga
ctaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 375 58 NA intergenic
1195 chr1 80011125 80011126 RIP_Alu_chr1_080_02 0 - pAlu1-79690157 NA NA SINE Alu Yb9 gaaagtgaggtatagaaacagccagattggttacagcttggcgtttgccttatttgaacataatttgaacagttggccactttgattggcccaaactctg
tgatcagcacaagagtagctacagcctgcttacatgtccatttaggttatagttcatgatctacagagaaacctttaggtcaaacttaaaatatgtaaga
aggcagcttcagactaaacaatttaacagcttcaaagccataacttttggaattatattttctactagatagaaatctaaaaattaacatgcaacttcac
aatatctggcttctaatctattagataagcagcaaaaccaagcacaggtacattctcctagagaattaaacaatcattccatgtgcttataaAACAATGC
GGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAGAAAATTAGCCGGGCGC
GGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACT
GCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAAAACAATGCatcagtatgaaa
tttaaagtatatgccattcctttttgcttatttctaagaattgtataattttttatgaaataaagaataacagtaaaaaagtagacaccccactattaag
aacaatggttgaaacagacattatttaataatgttttaggggaatgtgattcacttctggaaaaactataacagaactccagatggtggagatagaataa
cacgaaaaatattattaattgcagaaagaggcaaaattccttgaaatttatgcataaatcctgatactagaaaatattcattcatatactaacaggagta
tatatagaaagaataaaagttgctaaatgagaccaggacagtgattatcattagctacatggggctgagtattcctaggg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1202 chr1 80906374 80906689 RIP_Alu_chr1_080_01 0 + Ya5-MLS59|pAlu1-80585314 GTTGAACTAAATGCATAGCCACCA GGGAACTTTTCAGTAATTCGTTTGA SINE Alu Ya5 catagtatttcagggcattatctctcaagtggtaccttaactgagccttcagcaggccattccaatgttctatctagctacatgctactgaaggtaaagc
atatttaacgtgaaagtatatattttttatgaggacaaattgctctctccttcattatggaaagattaacacttccatctgatggctgcgtggtcagcca
ggaaaccagttctatttcagaggctcaatattggtctgtgctgttggcagattgggcaataagcggtggtggtattccaaccagccattttaagaagtct
atatggttgaactaaatgcatagccaccatctttaccaatttgtaaatgtgcctattgagcaagcaaggggctagggaatgaaaggagAAAACTGGCTGG
TGGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGTG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACTGGCTGGcatccagaggaagggctgtgacatcaaacgaattactgaaaagttcccctgcaatagacatttcatgagacta
ttttcatgggaatatcttcacattctgttgattcagaaaggttcattcacattttcataatttcaacctccttgttacaattcttctagtcctgttcttt
ttaggcaatctgtcttagtctgtttgatatgctataataaaatactatggactgtatagcttttaaacaacagaaaattattttatacagtccagaggct
aagaggtccaatctgcactaacagatttgttgtcaagtgagggcctgttcctcctaaatggcaccttctagctgtgttctcacatagtggaagggtcaag
acagctgcctgaggc UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Selective PCR with subtractive hybridization|Genome comparison NA 0 0 0 NA intergenic
1203 chr1 81063550 81063551 RIP_Alu_chr1_081_01 0 + 8258 NA NA SINE Alu Ya5/8 tactggtcatattatatgctagctaattctctaagatttgtcagttaaacatttgcccatatgtaaattttaacagacactaatatattcctttccaaga
tgattttaatagtctgtctccccattggctttacttacacaagtatttttcatgctactctgtgatagtactgaaaatttatcagtactgctcacttatg
cttatctgatgaattttgtgtttttctgtcatcagtcatttctgtaaacctaaaggatctattaaatactttctcgtttctcagcacacactcttagtaa
tgtttcccacagagattattaaaagaaacaaatagttactttatacatttaaaaagctataatcccatcctaactttaagagagtctaaaaGAAAATTGC
GCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAG
CGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAAAATTGCttatcctcataatcaggaaagggggattagatggttaccaagtttatttaatg
aaaaaaacaaaccttaagatgaaccaaatattcttagcaaaaagtaaggaaatcattaatgtattatagttatgattttgagcatctacttcatgccaga
cttcatacacatatctttccttatccttacagcatcactgggaattaaatagttgacccattttaaacgctatggaataggctctcaagagagtaagttg
tataaagtcataaaactggacattactagagcccagtttttaaccaagttctttctgtgaaatgattcgcattttcttcccagaaatgtatacaatttac
tctgctgcactgttaacaatcacttataccacctggct Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1216 chr1 82754675 82754985 RIP_Alu_chr1_082_01 0 - 545 NA NA SINE Alu Ya5 atcagcagatgtatagttaccatggcagcagacaagatatggatgatattaggcaaataaaagtaaacaaagataataatatttaaaagatagaattttg
ggcagaaaggtaatttgatcaacactttagttgatgggttttttcaactttaagaattatagggattatatcttaatttcaagatatttaaataattatt
attttaaattaattggattatttttaataattagtcacagactaaacaagaaggaaaattctaccagatagaaatataaagattccattttataatgtct
gtcaatatagcagaaattaaaatgtaagtaaataaataaaatagaggttaaacaattttctcataaaagttgacaaaaaaatttaaagttAAAAATATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATATAAatacaagctacataggaattaatgagagtaaaacattttgataaaagttaagcaatgtaattaaaatcaatatttaaagt
tcaattaaagatgtgaattgagagccaggacagcaacaaaagcaattgcaaggaaaaataataccaaatataaagacaaattaatgaattagaaaaataa
aacatgacccagtaaattataaagaagaaagtatagcaacaaaggtggagtttttgttttaagttatacatttgctttttgaaaatatgtgttaaatatt
tgaaattttcaataaacagagtcattttctaggaaataaatatttattcaagaaaagcaaactatactgatgaattatcatggaggagactgaaaacatc
atcaaaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1237 chr1 85460655 85460971 RIP_Alu_chr1_085_01 0 - pAlu1-85036899|Yb8AC1025 GGATCCTAAGCTGGAGCAGA GGATTCCAGTTCAGCCTTGA SINE Alu Yb8 cccccactgcagccagtgtcatgatagcagccactccagaagggccacccacgccatcaccaagattgcaacactgaactccagcctgggcaacagagca
agaccctgtctcaaaaaaaaaaagttattttctggaattatgcttgccatcgaaccccacctggagtttgcaaatatcatcttcctctttctgagacttg
cattagttaacattgccagtcttcagctactctcattgttgcacagtgcccttcatggatcctaagctggagcagatacatcatttgtgaggctcaggat
ataatgattcagagaatgctcaagcatcctagcttctctgaatcattatgtcctgaagcacttagctcagtctacagctagtaattAAGAACACTGGCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAACACTGGCCTtattatcaaggctgaactggaatcccggttctgctacttggtgggagaatgaccttgagcaaatcatgtt
tctaagcctcggatttctcatctctaaagtgaggataataaagcctacctgtaaggactgttataggcattaaattcccaccacagatgtaaagtgcttg
gctcagagtgaatgtgaaataaactgctagtgattatttcttcccagggagttgtaagactgggagatctagcccctcctccaatatccccctgctggca
tataggtatgcaacctccaaacattcaggactcatagcaggtgcctgcctgcactcttcaaaccagtcctctagggggaagacaaagggaatgatccctt
atctctggttccctca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Genome comparison|Candidate screening NA 60 499 169 NA intergenic
1242 chr1 86117826 86118142 RIP_Alu_chr1_086_02 0 + pAlu1-85698023 NA NA SINE Alu Yc1 tatttctgtttcattatgtgcagtgtgcttatattatgtacttgcagaattttactatgccagtatctagtgcctaaggagttcaaataaaccagatgag
gaaatgatgtagcacagagattatactgaatcatatctgttactgaacataggatatatactgccctcttaatttcttttctggcatgaagtagtagtat
aaataaataaaaataatgactactcacctgtgctatctacttactgagtcagtctttgaaactaagactgtgcctagtatgtcttattaaggtttccaaa
agttgaagataaactatctacaaacactggggatgaattgaagaaaaagcaattttatacaaaccctgcattcattaacacttttaaaAAGTGCCATAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGTGCCATAAGatatattcagccatttatttagtcaagaaacatatttgagagcataatacatgcaaggcatgctaaataatg
taaaatgttttatattatcgattacatttagaatataagacaagcacttcatgattatggaggttcctgattagacaatagtctactttggagtcacagt
tcctccacttcagacatttggatacataaagttttataaaactgaatggtctgcttagtatccaaatagggatttcagcttctaacgtttccctaacaac
tatttgactcttggatcaaaaatgtagtaataaaataaaagttcagaacaaagttttgcccgaggaaggtctggcagtgatcaagagaatatgcctggaa
tgtctactcaacagat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1245 chr1 86594468 86594773 RIP_Alu_chr1_086_01 0 - Ya5ACA662 CCTGCTGCTTCTGTGTTTCA TTGCCATTTTCACTGACTGC SINE Alu Ya5 gtagtcaaatgacaaaaatgtagttcaagtttaagcttataaggctgtggttcttaatgcctcatccataaatgctccataaatggcagctgattctaca
gtaattattaattagtataattatcagtactgtcagctggagttctcttgctccccagagaagtaggtataattggcttttacctctgtcaatttcatgg
cccatggaagatcaagcccctcctaaatttctgcaactatgctgtatgcttgatttctcaaaactcctgcttcccagatccacacctgctgcttctgtgt
ttcactacattgtcttaaatgtagtatttggaatttctcaaagaaccatgtatatactgtgtttgcagcaatttagactttactAAAGAGTTCTTAGGGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTTCTTAGGGAaactggagaggtatttatatcacagaaaaaaataaaacttaagcagtcagtgaaaatggcaacattcttgtaagggaaa
tagctgcactttagtcaagagcaggccgaggtggccttctggtgcagcatgactcagtgggtttggagcacagggcacaaccctgcacattatgtaacca
cgtgacacgaggtgcattaggtgatcacccatgtgagctcgtgcttggcttggagccattattgtctgtaaaaggtataattaccttgctaacactgtat
atacagcttgctcgcatccagagagagagagtaaagccatgtcaaaactgtctatgattcctcaatgtttttccagctacctaccacttgcccaccgact
cccct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 499 176 NA intergenic
1252 chr1 87549573 87549851 RIP_Alu_chr1_087_01 0 - Ye5AH20 GAAATGATTCCAGGTTGAGA CCGGATGGAAGATAATGTAA SINE Alu Ye5 caaggttattccattttctccagccaatgacaggaacggatgaagttaaagattgggggtgggagggaattaacaaggtagtaggagaaaccaccatagg
atcctgcccaggtaggatgggaaataaagcccagaaagggcaggaggactgggagagtagacagggtcaaaggaatgactgtgactctgaggcttggtgg
gagcagcctttgcaggagagaaggaaaggacaaggtggagagtaagagatggtgactagggacgggaatgctgctgctggagttttcaaagcagaagcag
ctctgggtgtagcagaacagacaggagaccaggaagagagggactggctgagagccggatggaagataatgtaatcagaggtcatgaaagTGGTGAACAG
CCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTAAAACCCCGTCTCTACTAAAAATACAAAA
AATTAGCCGGGCGAGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGC
CGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAGAAAATGGTGAACAGaaaccccaaaac
acagacataaactgctttctgggcccaagacccacgttaatgaaaattaacagccttaaaatttatcaatgggtcctgttgcttgcaggatggaattcta
actcctcatcacataagacctttatgatctttcagtgtcacctcatctcccagcacaccgccacccaggcccttcactcttctactgaaccactttcttc
catgtgcacacgctgatttctcaacctggaatcatttccctacacctttcctcaaaggactgttaatgagttttcagaggtaagccctattcctctcctc
tggagaaccttccctgagtgcccagtctgagttgaatgtcccccttcccactacccaatatctccccctgaactccag UCSC - Salem AH, Ray DA, Hedges DJ, Jurka J, Batzer MA. Analysis of the human Alu Ye lineage. BMC Evol Biol. 2005 Feb 22;5(1):18.PMID: 15725352.
Candidate screening NA 0 0 0 NA intergenic
1253 chr1 87654739 87654740 RIP_Alu_chr1_087_02 0 - pAlu1-87235024 NA NA SINE Alu Y ttaaaatttgcattttaaaaagtatttaaaatataaacttttatatcaagaaataagagaaacaaagcaaagtcaaatatacatatacataaaaacttca
aaatttatggctgagtttagatataccacaatccacctagaagataggtatttataccagggctctatttctgtgtgactcaaaggcaccaaaagggcat
tataaatattaataaaaacctcgaaagctaaaccacatttttatggagttagaagcacaaactgaaagaattaatttgagaaggagacggtggtattttt
ctatggttgttttgttttgcttttactgagaaatccagtagttccaattctgtcacaaaaaggaaaattgtatagcttgttgttttGAAAATGGGTGATG
TGGCCGGGTGCGGTGGCTCACGCCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAT
GGTGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCCGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAATGGGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAAGAAA
AGAAAAGAAAATGGGTGATGcttgggccagatgcggtggctcacgcctgtaatcccaacactttgggaggccaaggcaggcagatcacgaggtcaggagc
tcgagaccagcctggccaacatagtgaaaccccgtctccactaaaaatacaataaattagccaggcgtggtggcgggtgcctgtaatcccagctactcgg
gaggctgaggcaggagaatcgcctgaacctgggaggcagaggttgcagtgagccaagactgtgacactgcactccaacccgggcaatagtgcgagactct
gtctcaaaaaaaaaaagaaaaaagaaagaaaagaaaacggccaatgcatgattgtgtcaggccacacacaaacatgcagaggatcaagaatattgttttc
agcaca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1262 chr1 88827753 88827754 RIP_Alu_chr1_088_01 0 + Ya5ACA659 TCTGTGCAAAGCAGAGGGAT AACAATGCCTAGCACAGGGT SINE Alu Ya5 ttctaattcactttaaatggagtttacattggaaaaaaataaagacagtggagcatttgatcccatgcatcaaaaagcacttactgagcaccttggtaat
acaggttatatctgcatgcctcaatttctagcatgcttacataaattacctcatatgtgagctaagtaggcagataatcaatgagttattgtctgtgaaa
cactttaactgaatatacaatgtaaacattaagaaaaaatttctattttacacataagcaaatggggtctcaaagaagtggagagacctgcctaatctga
caggccaggtgtcctgactaccataaagctttgcatcacactgctttcctgtgagtctcctctgtgcaaagcagagggatatgttGAAACCTCTGATTTG
NNNNNNNNNNGAAACCTCTGATTTGaaagggtttacaaatcagttatagacaaatgacatacacataaaagaataacatgatgataatagtgaagatggt
gatgatagttgacacttttatggtacttaccctgtgctaggcattgttatacatgaagtgacccatttaaatctcttagcaatctttcaaaataggcatc
atgagataattaaggcacagagagatttagttacttgcctgaagttaccgggatagtgtgtggtaggattgaaatcatttgaagtcagctgcctggctcc
agggactatgtttgactactatactctactgcctttctataaaacagtatatggaatacattctatattcatgatctaattagtgtgttagaatgtcagg
gagatttata Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 478 163 NA intron
1267 chr1 89504672 89504673 RIP_Alu_chr1_089_01 0 - pAlu1-58314076 NA NA SINE Alu Yc2 atacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttgattggaacatttagcccatttacatttaaggttaatattgtta
tgtgtgaatttgatcctgtcattatgatgttagctggttattttgctcgtgagttgatgcagtttcttcctagccttgatggtctttacaatttggcatg
tttttgctgcggctggtaccggttgttcctttccatgtttagtgcttccttcaggagctcttgtagggcaggcctggtggtgacaaaatctctgagcatt
tgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagtATGTTGA
AGGGCCGGGTGCAGTGGTTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGTGGTGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACAT
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTTAGCCGGGCTTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATG
GTGTGAACCCAGGAGGCAGAGCTTGCTGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGAGAGCGAGAGTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAATGTTGActattggcccccactctcttctggcttgtagagtttctgctgagagatccgctgttagtctgatgggcttccctttgt
gggtaacccgacctttctctctagctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcga
ggagtatctttgtggcattctctgtatttcctgaatttgaatgttggcctgccttgctagattggggaagttctcttggataatatcctgcagagtgttt
tccaacttggttccattctccctgtcactttcaggtacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcat
ttctttttattcttt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1281 chr1 91336808 91337077 RIP_Alu_chr1_091_01 0 + pAlu1-90961213 NA NA SINE Alu Ya5a2 tatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacttcgtgatccgcccacctcggcctcccaaagtgctgggatta
caggcgcaagccactgtgcccagccaaagtttcccctttttataaggatgccttattttggattagggcttaccgtaagatctcaacataactaattaca
atggcagcaaccctatttccaagtacggtcccattctgggggttaggacaccgatatatgaattgttgggggacatgattcaactcctaacaagggactt
tgcagaagattaaagttatagctttgagatgggaaaattattctgaattatcctggggggcccaatttagttacttgagtccttaaAAGTGGAGAATCTT
CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACGAAAAATTAG
CCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC
CCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGTGGAGAATCTTtcccatctgcagtcagg
gagagattggtgacgatggaagggtcagagaaatgcaacattgccagctttgaagatggaggaaggtgccatgagccaagaaatgatggtcgcctcagag
gctagaaaaggcaaggaagcaggttctcccctgaagcctccagaaaggaatcagacgccgtgttcctagttcagtggcctgtgttggatgtctgaactac
agttgtaagatcatacatttgtgttattttaagccactacgtttgtagtaatttgttataacagccatagaaaactactaatacaacctcccccaaccac
agctcctaagtttgccatgtgatctctcatcccccgataaataatgcttctatgctgggagtaagtcac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1296 chr1 93210247 93210248 RIP_Alu_chr1_093_02 0 - pAlu1-92835741 NA NA SINE Alu Ya5 aacggggcatgcatctgatccagatgtgcatcaggtaaaccaagagaggtctgatacaaagctcttcaacctcctaaccctctctaagaagcacagcaga
gcatcagaataaatggatagaaaggtagtttgtaaattaaaattgcaaatgctcaacgataataaatattgctttttatctacatgtcatttaatggcct
taataaaggtaatctatacagattgcctaagagaaatatttaaataacaagttatttataatacttactatttaaccagaaaaatacgttaatcagattc
atgaaggtaaagcacagaacaactctaagttattttataactatgatagtaatacaagctcaaaaatatttaccgaatgtagaattAGAAAAAGGAATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGGAATCTaattttgaagaaaacactttaagctgtggtgatgggctgctagacactatcaaatgcagt
aaattctaccatccattgttctattagtaagaaatgcctgttatctgaacatttccctttttaatccggtaccatataattatcataggatttcatatat
tatttcattattataggatttcaattctgtgttcatggggcaaatctggagagccatatgaagaccctgggactcatgtagtaatccaaaatttttgaat
ggtgacattacattctattttatttcaatgatattatcacatttcagtgctttgaagactcagtttctagaatatcttatttataatgtacacatggtat
ttgattaccaacatatcctattctct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1301 chr1 93963488 93963792 RIP_Alu_chr1_093_01 0 + 10372 NA NA SINE Alu Y aatgtgctagctataccaaacatgtctgtgaaccatatttggatgtatacaaaaagatctagctatatcacaggattgtgagaaggataaaatgagatgg
aatagaaccaacaataattaactagtgaatatgcatcattaatgcttttaagaaaaacccacagatataatacaaaataggtcagggtctggtgacaggt
tgtactttccaaagatggctgcaataacatttcccatccacatgctatttttataaggtaaccatgacactttttctatcaaatggtggaggttactttt
cctcccctgaatctgagtgggactttatgaattcctgaaacaatagtatagtggaaattatacgatgtgacttccaaagctagtaagtcatAAAAGTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCCGCCTGGGCGTCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGTGCCatgcatttctgccttgctccctgggaatgctcatacctgtaacccagcctcaatactatgagggagcccaaggcccctgtggagtgc
agaggaccatgttgacaggaaccaaagcacccagctcacacacttagctgggctcttagccaaaagctagctctaactggctagctatgtgagtaaacta
tctcgaaagtgggtcctccagctcccatttaagtagccccagctgagaccatggagagcagagacaaagccattcctgctcagtcttgcctaaattacag
attcataatcaaaataaatgaatgtcattgctttaagtcactaagcttaggagtgactttttacacagaaatagataaggggaacaggatcaaatgttga
attt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1312 chr1 95402545 95402850 RIP_Alu_chr1_095_01 0 + 7377 NA NA SINE Alu Ya5 gccattctataagatttcatgatctcagaaatcaagtcatcaaggaaatgacaaaataatgcatgtacaagccatcttgtctgctgcctggctaatgcca
aggcgagatgccattgatgttttggagcttcttgatttcagagacgttaaaatatatataaaaaatgcatctaaaaagtgatatacagtctgggcatggt
agctcacacctgtaatcccagcactttgggatgctgaggcagaaggatcatttgaggccaggagtttgagaacagcctggacaacacagcaagaccctgt
ttctacaaataataataataaaataaaaagtgatacataaagaatactagactgcccatatcactacaggtacctcactttgtcaaAAATAAATATAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
TAAATAAATAAATATAATTataaaattatttgaaatagcgagtttgtttaatgcattaaaaattatttgaataattgctggctgcagtggctcctgtctg
taatcctagcactttggaaggctgatgtgagtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaa
tacaaaaaaattaggcaggcatcgtggctcatgcctgtagtcccagctactcaggaggctaaggcaagagaatcacttgaacccaggaggtggaggttgc
agtgagctgagattgtgccactgcactccagccttggtgacagcaagacttggtctcaaaaaaaaaaaataaaaaatttgagtaactactcagtctgtgt
aaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1335 chr1 98317318 98317319 RIP_Alu_chr1_098_01 0 - Yb8NBC596 TCCAGGGCCAAGTAGTGAAT CTGCCCCAAATGCTTACACT SINE Alu Yb8 cctaagaagacctcttatctagagattttatcagcataaataaactaaatcttcacacctgtaatgcagctattattcaaattctcatatggatgtccca
aagagtaaaaaagatagcaatattttcatgggaaagtgactattctgtcaggacccactcaaccaaatagaataggtcttataacctccttctacttctt
ttggttttgcacaataataaataaatgcccagtgtgtgctcaatatttaacttatgaattaaaaagtactgagatttacttctttggcatttaagttatt
tttatatccagggccaagtagtgaatacacaatagataagtaggtaccaaatagataattttttagactaccacagctaaggccAAAGAAATATTTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATATTTTTGAataaatgaacatgcttctaaagttaatcttcctatcctaactcctgtgtaatgagtatct
tagctccagagaatgattctgatagtggcagtgtaagcatttggggcaggttagtaagactcttggtggttgctatttccactttaataaaggatgatgt
ttgaatgtaaaacttagtatcaattttggcaccaaagtaccactaaaaaagttgcacccaccattttccaaccctttcagtattgcccatctatgactaa
acattgacaaaagagttgaaactagcatataggacaaatcttacccagttttgcccccatctcctacctgctaactgctctcaacctaccaagaatgaga
cttctttatcctaaatgaatcaac Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 55 543 203 NA intergenic
1368 chr1 102759713 102760029 RIP_Alu_chr1_102_01 0 + 7148|pAlu1-102338773 NA NA SINE Alu Yc1 tcccacccttgacacctggagattatttcaattcaaggtgggattttgatggtgaaactgagccaaaccacgtctgtgagccaagatatctacattcatc
atcaaaatgggaccttcggaatttcctcagtgaggttactaaccctagccatgcatatccacgccataccacactgactagattcactaaggtctgtcat
aaggaaggcatccaaattgaatagcattttataactgaggagcactagagagaaaaggtgtgatcatagcataagatttgttctgcttcaccccagaagt
ccacaaatgggaaaaatgagggcagctttaatttgctagaaaaaagcaacacctgtattttgagtatatatcaaaccctgaggattAAAGTTCTTGTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGTTCTTGTTTCagctctccatctaatggattatagtatacaaagttcagctttttcggttactgcttttaaagttttctaa
tatgattaatagctttaacaaaaaggtatctcttaagtgtgcaatatagttgctttctctcacatagacagtcttgtttggaaacaatttcttttgatgt
agttctaaagaaatatttacctttaacaggaacactagatattttttcaatgcagaagctttttttctgttataaagagagcaataatctgtagtataaa
gaattaaaatttaaaactaactactgtattgaatgaagactttgatttatacctaataaattttagaaagttttaaaagctaattttataaattatttta
gtcaatttaagggata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1369 chr1 102808101 102808406 RIP_Alu_chr1_102_02 0 - 53299|pAlu1-102387157 NA NA SINE Alu Ya5 acaaaggttagctttctcgtggttcaaaaaataggctttaatattttttctttttttaaaatgaatccagaaactataagaaagtcttggcaaatcatgg
aactagactcttctttttatttctaatatatcagtgtcaatatttttaatagagtctacatggcattaccctagtcattattcatttaaaaataccaaaa
caaacaaacttgctaatccaatctgtaaaatggccatgagtttaattttgcaaatgttattgagatctatttagtaagagtgggatatccatcaagagtc
ataatgatatttataaaatatgtatagctgcctagtctacttaaaaggaacatccagcacaatcagggcaataactacctttttatAAAACATTATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATTACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCGGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAACATTATTACTgttctattagtgctataaacaaagtattgtgctactccagtgaaatgaacattattcaccaattggaaccagcaaagattc
catgaaatgctaattgaaacttggattttgatgggcatatatgagggatagtagggaacttcaagaaaaaaagcgtggtgtgcaatctgccacaaaaatg
ggatgaaccctagcaattgttgctgtcagcaagatgtctaggtgatgactactactttcttctcttgctttggcctgctaactggttctgctgccttctt
gagagcacacaccttgaactgctgctggctggctatgatgctcatcagctcatgttgggcttgcactttgagcactattcccttgtgctgctttgtgctg
catat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1384 chr1 104766103 104766104 RIP_Alu_chr1_104_01 0 + pAlu1-104211118 NA NA SINE Alu Ya5 atattagtaaagaataaatgataaatgaccaatgattccaccttataaaatttaaaaaaatagaacaaatgcagtccgaagcaaaaagaaagtaattcag
aacagaaattaataaaattgaaaacagcaaaacaatatggaaaaattaaaaaaatgctcacttttggtatgataaataaaactgacaaacctgtatcagg
tacaagaaaaaaaaaaaggaatgtaaacacacatttccaatatcagaatgagaaaagagaaattactacagatattacagatgttaagtggataatgaga
aatattatggacaattctttgccaaaattattcaacttacatataatttaaaaattctacacaaattaccaaattcattttttagtgatAAGAATAGCCC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAATAGCCCgtattttcaactgtgtcaccttcagaaatgtatccaaactcgccatgattcacttactatgatacaggaat
attaatagttcatacactagaagattgtatgagggttaaaggaattaacacatggaaagtccttcaaatagtatctatcacataatatgagtcatgtatg
tgtgtcaccattattaatttccttgattttaacttttttttttgtttgtttttggcttttagggttttttctttcagctaagctgtcctttttaaaatgt
gtgaagtgtttaattcaacaatttcattatttcaataaattgtagtttaattatttgatataattttccaaaacattgaagtcatatatatgaattaaga
caatccaccagagcatat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1386 chr1 105100888 105100889 RIP_Alu_chr1_105_02 0 - pAlu1-42180814 NA NA SINE Alu Yg6 acctctacgcaaataaactagaaaatctagaagaaatggataaattcctcaacacgtacactctcccaagactaaaccaggaagaaattgaatctctgaa
tagaccaataacaggatctgaaattgtggcaataatcagtaatttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaga
tacaaggaggaactggtaccattccttctgaaactattccaatcaataggaaaagagggaatcctccctaactcattttatgaggccagcatcatcctga
taccaaagccgggcagagacacaaccaaaaaagagaatttttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaAATACTGGCAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACAGGGGAGGCTGAGGCAGGAGAATGGCATG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATACTGGCAAACCGgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaat
atattcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaattc
aacaactcttcatgctaaaaactctccatctggtatcctttctcttcagcctaacggtatcatctgacagttcttgtagtgtaggtttgcaggcaacaaa
ttctataggcctttgttcctctgaaaatatctttatttcatcctcagtatacttttttctgggtatggattcctgggtttgcagggtattcccacttgtc
cgagttttc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1387 chr1 105140341 105140660 RIP_Alu_chr1_105_01 0 - 5866|pAlu1-104585259 NA NA SINE Alu Ya5 cagtccttaagaatcttggcatgactaacataagtgaatttgtattaactatgagaaaatatcaaggaaaaggattatagatgtccatgttagataatcg
gagctcatgtttttgtctctaatgactcattattctttacaaatattcataactaatttatctgtgaccaaaaactatatttcatcaattctaagatgca
taatttttacattttaaaatatcttaaattatagtgcatatgaaaaagcaaaggaaaatatcaacagagtaaacagaccacctacagaatgggagaaaat
attcacaaactctgcatccaacaaagatctaatatccggaatctataaggaactttaacaaatcaacaagccaaaaaaaacaaaccattAAAAATGGGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA
ACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAATGGGCAaagtacattaacaaacacttatcaaaaaaagacatacatggagccaacaagcataggaaaaaatgctcaa
catcagtaatcatcagataaatgcaaatcaaagccacaatgaggtaccatcaaacaccagtcaaaatggctattattaaaatgccaaaaaaataacagaa
gctggtaaggttatggagaaaaggaaatgcttatgcattactggaggaaatgtaaattagttcagccactgtggaaagcagtttggagatttctcaaaga
atttaaagtaaaactaccattcgatccagctttgccattactgagtaaatacccaaaagcaaacaaagcattctaccaaaaacacacatgcacttgcatg
ttcattgtagcactattca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1444 chr1 112704037 112704038 RIP_Alu_chr1_112_01 0 + 32729 NA NA SINE Alu Ya5 ctatggaaaatataacatcagtgatcctttaatggctctacagagagattttgaaacactgaaggagaaaaatgatggcgaaaagcagccagtctgcaca
aatccactctctattcttaaggttgtgatgaagcagtgcaagaacatgcaggagcgcatgctgtcccagctggctgctgctgagagcaggcaccgaaagg
taggttcacctcagttgatgtgtaaatctttgtgaagtctttataaattatgcctgatactttcttgtcagctgccagtttttcacagtaattcaattgg
gacatctcacgggtatcaaaaagccccttagtttatgtaagagccaggagataaaaaagaaaacacagcttattgcaaatgttaagAAATAACGTGTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATAACGTGTCTGaagacagcatttcttcttgatatgtcactccaaaacactttgtatgttttttcagttcttgatcattcaaactttggggtttgg
ccaagcttgtagctgacgggagtgttctctatttgcttacttaagagataaataaaaagattaacaggtatttgaggcatgctatatccaagggagagaa
agaatttacctgaggataaacacagaagccaatagattattttcatttattcctattattcctagttttgagtttcattgcattttgttgctcatgaaac
cataaacagtcccttggtttatttaccttaaaggtgttctactctattagtgaggggtgtgtgtgtgtgtgtgtgtgtgtgttttccatatttaacaagc
cc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1455 chr1 114097483 114097774 RIP_Alu_chr1_114_01 0 + PV30B GGAAAAGAGTATGGCTGTCT AACCCAGAAGTGGAATTACA SINE Alu Ya8 aatcccagcactttgggaggccgaggccggcggatcacgaagtcaagagattgagaccatcctggctaacatggtgaaaccccatctctactaaaaatac
aaaaattatctgggcgtggtggcatgtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcattga
gccaagattgcgccactgcactccagcctggcaacagagcgagactgtgctcaaaagacaaacaaataaacaaaaaacagaaaataaaaagtgttggcca
ggatgtagagaaattggaatccttgtgtactgttggtgggaatgtaaaatggcacagctgctatggaaaagagtatggctgttctAAAAGAAAACTAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAAA
CTAAACatagaattaccacatgtaattccacttctgggttatacccaaagtaattaaaagcagggatacaaatatatatttgtatacccatggtcatcac
agcattacagcagccaaaaagtggaaggaactcaagtatccattgatggatgaatggataaacaaaatgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtg
tataaacatatacaatggaatattattcagccttaatgagtaagaaaattgtgacacgttacaacatggatgaaccttgaggacattacgctaagtgaaa
taagccagacacaaaaggacaaatactatatgattccacccatatcaggtacctacagtagtcaaattcatagagacagaaagtagaagga UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.PMID: 7714898.
Library screening NA 0 0 0 NA intron
1460 chr1 114755572 114755874 RIP_Alu_chr1_114_02 0 + 14400 NA NA SINE Alu Ya5 agtttttaaaatgaactttcacaagataatacattttagtataagagtgagcaaaaggtgaatggccaaggtttgtcttggaaaaagaaattttttaatt
aaaaaaaaaaaaaggagcaaaaggtcaagatcagtcgagataatcttgaagatgaccaaggtatacgtagagagggcagtgaaattaccttaatgaacaa
aacttactgcttattattataaagctactaagaacagcaaaaaaaaaaggaggaaaaactattttaatataaaaacatgaaaagacagctctctaaaaag
tgtatcagttatctattgctatgtaacaaattacctcaaaaattaatgacttaaaacaacaataattatttctcacagctttcttgaaacAAGAATTTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TAAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAATTTGGgagggacttggcaggcagttctggcttagtgcctctaagaaggctgcagtcaagatgtcagccaggaaggactgcagtcatctgaaag
cttgattaggatagagaatctacctcaaaagcggctctttcacatagctggcaagttggtgctgggtctttgcagaagacctcaatttttctccatatgg
cctctttaaaggactactagagtatctttcacagaatgacagctgtttttcacccagaacaagggattcaaagagcaaggaaaaaactgtatatatggct
ttaatgactttttaataaagtcactattaattctattatattctcttggtcacggagaccagccttgagcaactggacagcaaccatacaacggtgtgaa
ta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1466 chr1 115508941 115509214 RIP_Alu_chr1_115_01 0 + Ya5ACA974|pAlu1-114896896 GCCCAGTCTAAGACGTTTTGTT TGCAGGCACCTCTTTCTTTT SINE Alu Ya5 tacatggactttcaaatacactgattgctatgacctaaatgttgttgttccctcaaaattcatatgttggaacttaatttctaatgtgatagtattaata
ggtaaggcttttaggtggtgattaagtgataaaggcagagccccatgaataggattaataccattatgaaagtgagggacactgtttgccctttctgcca
tgtaaggacacatagaagtcaccatctatgaggaacaggtccttcccagacaccagatctgctggcaccttgatcttgaacttcctccagaactgtgaac
aataaattctgttgtttataagttgcccagtctaagacgttttgttatagcagcaggaacagactaagacattatcatattctatgtttAAAAGAAAGAG
GTGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGG
CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC
ACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAGgtgcctgcatgtgtac
ttatttaataaatacttttatatagtagacataaattacacatactatatattaatatatggtacaatgtattttatttgaagaatgaaagaacattcct
ctgaaaatgatatactgaaaggttcagaataaaactagcaaattattggggattttcagtgaaatgcaagaagacgtagtttgtataaaaaagtagcaga
aaattctaaggagacaacaggctgggatgaaaaatcagcaggctgagaaacgaaataaagagcatagaatcaatttggaggggctgagataattttttta
attatggaaaattaatatacaatagtggaatttaaatccatattggaaacaataagaagatgattttatagtt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 368 85 NA intergenic
1471 chr1 116183161 116183464 RIP_Alu_chr1_116_01 0 - Ya5ACA636 ACTTAAAGTGTTCAGCGGGG ATTTTCCACCAACCAGGACA SINE Alu Ya5 tgtataattagcagtttcaagggatttacagtctaccaagaaaataaaacacgtgcccaataaggccgctttgaagaattatgtgataaaagcaatgaga
gttgtatatctcatgtgcttgctgcacatgactttgagcaatcttgtgaaaacattctgcctcaatctctttcttaatatagcagagtcctagtgagata
acatcagagaacagaagatgattggtgatttattacttttcagtttttacaagtttaaagtggcttatatgacaaatatcgaagaatggtcccacctttc
ccagagtagggagagaccttactttagtctgtggatatgtttacttgctgactgtcaatgagaatgagacaatgacattcacttAAAGTGTTCAGCGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGTGTTCAGCGGGGagctctggactatatttttctttttctgttatgattcttgcttgtctgaagccttatttcttttggtcaatacctgtgcta
aatgtcctggttggtggaaaatactgttaggttcagattcattgaaattcatggcaaaaatgaaagaaagtccttaatcaaaggcacaagatagattttg
caaagaaattacagccagaaaattaatccaaaatgtgctttggtttgggcttctgtacaagcacgtcttggcggcaggtctggactcgaggttgtgggag
ctgcaggagtggaaaatggaaatggctcatctgcacctgccctttctccagagatttggctcatcatcctctcccatgacacacagggccagtccacact
cag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 442 139 NA intergenic
1483 chr1 117803093 117803300 RIP_Alu_chr1_117_01 0 + pAlu1-117238000 NA NA SINE Alu Ya5a2 agaccaacccctgcaccaaaaaaaaaaaaaagttataagagcaagacaaaagacaaaaataaatctctttgaagacattacatagctattaatagataca
gagtcagttagagttaggtggccagacttgagtggcgagaatatcagagcaaataaatacattttgagataaacccagaattctgcagggctttttcctt
gaggcatttggcaatttaaaagcagcacagggctgagaagctaggaagctgggcagcagcagacacttaaataaggctagaaagctgagcagagctttca
gcagtctaacaagcctaaggaaacaaaaattagagttcagggttcaccaagaaaaggccccagtaaacaatctagacctcccattAAGACACCCAGAAGC
CTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAGACACCCAGAAGCtatactctaagaggtaaggtaaaccagaaataaaaggtgttcacaaaagactaaaacctagtcctgaaccagtgtaat
cccaatgtgattaataggggttaatatgatctgctccgtctctacctccctaccagagagttatacagcagaagagagaattcatcaccaggaagacaga
ctaactgaaaatatccatcctaaagttcagggagaagggaaaaaaagagatggaaagtacagaaaagaccatgagacatatgtgatacagtgatgaggtc
taatatataacaatatgtaatagtctcagaaaaacaaaaagagaatggggcagaagcaatattttaagagctactaaccaagaattttctaaaactgtga
aaaaaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1491 chr1 118792746 118792747 RIP_Alu_chr1_118_01 0 - Ya5-MLS58 GATTTAACGACCAGCTTAAAAGATTC AATAGATCATTATGAGGAAAGGCATG SINE Alu Ya5 gctgcacgaatacaagggtaatacagacatactgcttttatccagtaaatattgggataaaagtataaaagtcgctctaacacaagattaaacatcataa
atgttttaagagggctataggccaataactatgaagacccaagaaacatttgatataggtctttaagagatgagggaaaagggcatttctagaaaataga
tcattatgaggaaaggcatggtgataggatagcagagaacatctctggggtataataatcaatcctttatgtaccagtatataaagcacctactagtaag
cattagaagatctggggaaagtgaattaattttttctgggattggatttacacagaggcatgctggagctggctcacaccagcttatAAAAGCTGGTTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGTTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGCTGGTTGCtaatattaaagaatcttttaagctggtcgttaaatctttggtagcttgaaattggccatcttaagcatatttactctactg
aacatgtacatgctacataaataaatctggctttcattctctctcttcctctttctatctcccttccttctcctttcttctttctttcgtactcttttcc
agataaccggcacactactggatttatgtaacaccaggaattagattattatggaccctctgaacagttgaattgtttcagttttcattcagatttaaaa
tgttgcttgtgggtctactccctagcctgatagtttgcaagtgagaagagccatggaaactgcagaagacaggagctcctgactttctggccttcctagg
atcatg Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
1502 chr1 120322149 120322150 RIP_Alu_chr1_120_01 0 + Ya5ACA707 TCTCTTCACCTATGAAGCAGGAC CAGAGGTGGAGGGCATAGTT SINE Alu Ya5 attggccacaagccaaacacaggaacactcaaaagtttagaagggtgtgctgcaactggtaccttagcaaaacacaataataaattaagaggattcaaga
agccttcactgtagactctaagaagatttaagatttgtaccgagaaacggcttctaaatctcttctactgcattagtttagcatctaaagaacacctgtc
taaaaatcaaaatatctaaatcctatcctttgagtcaacttgactaacactcaacttgactacctaaaagctagctaataatcgcagcacctcagcagag
cagaggtggagggcatagttttatgcactgagatcctataataaaagaagccctatgtgtcagagtaatcccatttctgatatcatattatttAATACTT
NNNNNNNNNNAATACTTaatttttcaaatcactttacaattatatttattattccctacaattctctaaagcaggttattcctttagtcctgcttcatag
gtgaggagactacatatcatgaagattaagttatttaccaaaacaagttaatgatagaccaaggattattaccctcagactgtctcattgatcatactcc
tctctatcctaaagctacacttaaagctttcactcaaagaaaaaggaaaagcaaaaacaccatcatatatgctctttattaaatgcttcagaaacaacgg
ctctgcttcatcactacaaagcctcctggtccacttctgaaattcttagtgacctagacgtgtacgaaatttgaactttccaagaagtatctagttggtg
ctgaacaacc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 500 189 NA intron
1664 chr1 141526559 141526560 RIP_Alu_chr1_141_01 0 - 17726 NA NA SINE Alu Ya5 atagaagctcccttaattggtcttcccttgctgcttccaccctactcctcctaaagcactctcttcacacagaagctggaataatcccatttaaacagaa
gtcagactgtatcatgcctctccagtcctccagtagcctccaaggcccttcctgaagaaacctgctcgctgccccagaccacatctcccaccactcttcc
tcttgcctactctgtacaaggtctccttactgtttctcaaaccagataagcgcattcccatctcatggccttagatgtgcactattatctctgcctgaaa
taccttcctcaaagagctaaacagcaaaatccctcatttcctccaagaatcagttccaatgccaatttatcagtgaagccgtctctAAAAGAGCAATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGCAATATCcttgtaccccatcctctttgccctgtttcattttatcatcatctgatatattatatatttacttttttatgtattatctgtt
tcaactattagaatataagctccatgaaggcaagaactttttgttatctgctatattccagtgcctagcacagtgcctggaacatgggaggcacactgta
aatatctgctgaatgactaagtgaactgctgaatgactaagttgaatgacctcctcccacctcatgtcaggccactcagtcctgtctataatgtctttcc
tctgccttctggtaaatctaattcttttagttcccattgtcattatccaagtttctattatccctctgaattattgtagcaggctcctatatagtttctt
ccat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1682 chr1 143883036 143883037 RIP_Alu_chr1_143_01 0 + 11425 NA NA SINE Alu Ya5 tgactgtgagcctagaaagttgaaagtaatttctttattgagaaaataaagacatggttcctaaggaaaagggctaaaaatgaccatgtttcaagtacac
tagtgaatagcaagtgaaacaaaatgtcttaagcatctatatgtcttatcttagatacatacaactattgtaggaacattatttctcttatctctcagga
aacatatttagttataatatgaaaaaaaactaaaattgagcttctaatagaaaatcaaaccctatcagaagaagagttacgtggagtaagcgattttata
ccgatgctgacttactctccctaccataaaatttgataaacaacaaacatttattaagcacctaccacatgtcaagaactctgctaAAAGACATACAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAAA
AAAAAGACATACAAAGcctgagctcccagtctagggattaccacaaggaagagtgacggatcatgagtggaagggagatgagttaatacaaatggaaaac
aggtttcattgtaggaaaaaggaaagtgaattaatgctttcgaaagagacattaaagtagatttctgggcaatatgaaactgagagtcaatctcgtcaga
ttctgaaggcatctgtagataagcttcccaatgaaaaacagggcagtgacaataggacaactagaagtaagctataattatagcaaagaaggcaagagct
agcataaacttgcctattgtcattgttgaagtcatagaactactcctttcaactactcttgtcatcagaggcttcctgatgcgatcatctgtggtgagga
ta Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA exon
1710 chr1 147504524 147504843 RIP_Alu_chr1_147_01 0 + Ya5ACA702|pAlu1-147466446 AATGCAATGCAGCAAACATC CAGTTGCAGAGGACTCCCAT SINE Alu Ya5 aaaatcctatacaaatatagcaaatgcatatttgtgtctcggttacaaacattcattttctttctttttgagacggagtctcactgttacccaggctgga
gtgcagtggtgtgatctcgactcactgcaacctcccccttctgagttcaagcgattctcctgcctcagccaccttcatagctgagactacaggcgtgagc
caccgtgcccggcctcattttcttatttatttaattttattctgcttatatattgaacattcatgttctagaggtggactgctatgaacaataatttcat
caaagcaacaaagcagtattcattaatacctaatgtaaattaaatgtgaatgagcaatttaatgcaatgcagcaaacatccaataGAATTCTCAATTAAT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATTCTCAATTAATtcaaaatacttcagcaaatatcttcatttcttaaaacatgcagtttcctggtatcataaaaccctc
aaatagttgagccctaacttccaacagagtatttgagacttcaagaaacaataaaagcagctattattaagatataccaaaatacaagaaatcataccat
gggagtcctctgcaactgggcagtggccatcttcttctgataaagtattttctttaattcaaccttgtgacacaaatacaagctttaacttagagctcat
ttttttcctctaacatttcagtttaccacatataaaattcaaaacaattttatgtgaataaatttgaatttctttaattaaaatagagtcttcaaaaacg
tagaggtcgatattgcagt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 558 224 NA intron
1767 chr1 154990130 154990442 RIP_Alu_chr1_154_01 0 - Yc1RG75 AACTCTGTTTTGCTGCATCCTAT ATGCTCCGGAATAACTATTGAGT SINE Alu Yc1 ggaagatttcaataacccactttcaacaatagccataccatccagacataaaacaataataaggaaacactggacttgaactacactttagaccaaatag
acctagcagaaatatatagaacattccccccaacagcaacgaaatacatattattttcaaatacatatagaaaattctccagaatagattatatgccagg
ccacaaaagaagtcttaataaatttaagaagattgaaattataacaattatctttttggctacaacagaataaaactagaaagcaataacagaataaatt
atggaaaattaacaaatatgtggaaattaaacattatgctccggaataactattgagtcaaagaagaaattaagaagaaaattTAAAAATATCTTGAGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCTGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGATGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGACAGCGCCACTGCAGTCCAGCCTGGGTGAAAGAGCGAGACTCCATCTCAAAAAAAAAATAAAAT
AAAAATAAAAATAAAAATATCTTGAGGCaaatgaaaatggcaacataacataccaaaatgtataggatgcagcaaaacagagttctaagaaggaggttta
aaggaataaattcctgcatccaaaaagaagaaagatctcaaataaacaacctaacactacacctcaaggaaactggaaaaagaagaacaaaataagccca
aagttagcagaaggaaagaataacaaaaatcagagtaacacctagaaaaacaatagataaggtcaactaaactaagagttggttttttggaaagctaaac
aaaattgacaaacccttagctatactaagcaaaaaaaaaaaaaaaaaaaacaaaaaaaaaagagcaagaaagaagactcaaataaataaaataaaaaatg
aaacaggaggc UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 0 0 0 NA promoter
1770 chr1 155442460 155442772 RIP_Alu_chr1_155_02 0 - pAlu1-155407159 NA NA SINE Alu Yb7 tctgtttcttatatttaaagtgagattcttataaatagcatataatcaggccttgtttttattctattcaatctggtaatttttcttttttaattgtgat
atttagacaatttacacttagtgcaatcatcaatatggtttattttaaatctggcaagttgctatgttttttctttttatctatcactttatgtctcctt
tagatcaattttgtatttattgtgattccatcttatcttcaaattggcctattagctacaattgctgttttgtgtttgtgtgtgtatgtttattatagca
cagtgattttgccattgtgatttggagtccttttagggtctctgacacactcttagtggattcacaaagttaaaatattttcatAATAATGCTAAGACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAATAATGCTAAGACTAttattttcttttacagacttattcttttataagcatagaatggagtttcccagagcctagagatgggtgatg
atgtcactgttctgtctaatggagtatatgcttgtacattcttttctttcaaagcttcttgttttgatttcttatatgggaactattaatcagtctaact
atataagcaaaagatattttgcattcttaataatttttaaaattgtaaagggatcccaaaagcacaaatttgaaagccactattccaggaattaaaatat
agatttttttaatctatcatagtctaatttcaaataatattatgcatttcatgtttaatataagattcttaaattgatacttccatttgttttcaccctt
gtgctattggtg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1771 chr1 155525119 155525426 RIP_Alu_chr1_155_01 0 + pAlu1-155489820|Ya5ACA720 CCCAGAGGCATTGAACATCT TCTCTGTCACATTCCCACCA SINE Alu Ya5 agcttaacttacttttcaagcaaaagtaataacatttataaatcatacttatagtcttagaaaaacaagacctataaattaaaatgatagacacaaaact
tagtactgttgttattcatattaaaaatcattaaagagatacttcactttgaaaatacatgccaaaatgtctttaaataatttcgttaaaaaaagaaaaa
gtgcgtggtaattttaaaaaactgatttgttagcattttaaacttaaggagatgatgagatttctttgaagaggtgtgtgtgaactccattagctcccag
aggcattgaacatcttttgagaacagaggattttcttggtggcgtttttcatatctttgttcctcagactatagattactgggttGAAAAGTAGGGCAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGGAAAAGTAGGGCAAGgacagcaaacatcagtgcaatggccttgtccagtaatggtgggaatgtgacagagaagcgcagatacatgagtgacac
actgccaaaaaacagcaagaaaatagcaatgtgggctgcacatgtggagaaagccttctgacggctctcaccagagggaatcctcaggatcaccgtgatg
attcttaaatagaaaagggtgatgacagagacagaggtcagaatggaaatagcacggatcacatcttcaaccagaattatttacgtatctgtgcaggcca
actgcagcacaggttcaaagtcacaaaagagttgatgaatttggttggcgccacagaatggaagagtggaaatgcacacaatctctggcagtaacatgag
gaagcca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 483 161 NA intergenic
1788 chr1 157748108 157748411 RIP_Alu_chr1_157_01 0 + pAlu1-157712809 NA NA SINE Alu Ya4 cagcctgggcaacagagggagactccatctcaaacagaaaaaaaaacaaaaatgttttgactgcagttcaaaaattgtttcaaaactttgttgcaatttt
aaaaatatttctcaaaattaaaatgtttggaagactgcccaaacaatataaacaaattcaattgaaacatgcatttaacttttataaacttatatttatg
actcaacgacaaaaaagcaagcaacccaattaaaaatttgggcaaagtaggacttacagtatgatgttgggaaaaaaaactggacaaaggacttggatag
acatttcttcaaagaaggtatacgaatgggcaacaagcacatgaaaagatattcaacaccactcatcattagggaaatgcaaatcaaAACTACAGTGAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACTACAGTGAAAtaccacttcacaccctttagtatggttattaccacggggaccgagggaggtgaacagaaaacaagaaatgttgatatgaatggg
ccgggcacgatggctcatgcctgtaatcccaacactttaggaggccgaagtgggtggatcacttgaggtcaggagttcgagaccagcctggccaatatgt
tgaaaccccgtctctactaaaaacacacaaaaatgtgctgggtatggtggtgtgcacctgtaatctcagctactcgggagtctgaggcagaagaatcgct
tgaacccaggaggcagaggttgcagtgagccaagatcacaccattgcactccagcctgtgcgacaagagcaaaactccatctcaaaaaaaaaaaaaaaaa
aga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1796 chr1 158784338 158784643 RIP_Alu_chr1_158_01 0 - pAlu1-158748606|52678|Ya5ACA728 ACACGAGTGCTTCTTCCCAC CATTCCCAGAGATGTTGCCT SINE Alu Ya5 tttaacctgggctgccaaatttaagaaatctagccacattaaagagccaatttgaggccaggcacagtggctcacacctgtaatcctagcactttgggag
gccagggcaggaggattgcttgagcccaggagtttgagaccagactgggcaatatagtgagaccctgtctccaaataaaaaaattgccaatttgaaaatg
tagttacagtggaggctatgtgtgtttatggaaaatagcatggactcaagataatatgttatctgtcacttggcccacaggagacatgaatcttcctctc
cgcagaacaataaaatgcttctacacgagtgcttcttcccacccaaagaaaccaaaagaaaaagcaaagagtttacagtcaagatAGAAAAAAAGGACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAAAAAAGGACACaaccaaggagcttttccattgtgcgtggtggactgagatttccaatccaaaaggcaacatctctgggaatgaccttttca
gcgttttgtactctaccagaggcaccatggggcctctgggtggagagaacttgtcctcaaaaatagaggtgggccaataaacatatgcaaaaaaagctca
acatcactgatcattacagaaatgcaaatcaaaaccacaatgagataccatctaacaccagtcaaaaggggtattactaaaaagtcaaaaaataacagat
gttggcaaggttgtaaagaaaaaggaacccttatagactgttggtgggagtataaattagttcagccattgtggaaaacagtgtggcaattcctcaaaga
cctaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 55 469 149 NA intron
1801 chr1 159492980 159492981 RIP_Alu_chr1_159_01 0 - pAlu1-159457341 NA NA SINE Alu Ya5 agttctctttcaagacttaagctgattccaggcaaatatgttaatagttaaaacccaaaaagagcctggaaccatcagtaatctattagcaccaacaaca
aagcatcaaaaatatttatttgtcctcacatgagaacagtaggcatttaatatacaattgcacatgtcacaatatatgtaaaagaaacagacaaaatcaa
ttctgacttactcagtaccttccacataagaagcaccaatcaacggttaaagtcacttgagagggtatgctaaaaagttgccaaatgcagacacctacca
agctagcttagttaatatgcatgtggttaaataattgaaagtggatcaatcttaaatgtttaacatgtcctctgtcttaatcatttAAAAATGCCAAATG
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCCGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAA
AAAAAAAAATGCCAAATGcaactagtagaaaaatggtttgattggcttcatcctccacacatttttcacagaagtgcaaatgacaggtaaaacaagcaac
agaagaggctgagagactaaacgagcaaccctggaattattatgagctggttattctgcaccccaaccatgccttcataggaaaagattaattttctctg
ggtttctgaagagtatgttagctctctagcactgagctaaatgaaacgggattgttttctctccaccgtcctaatgttcatgggtgttcaaatttgtagg
caaaaggcttgtacagacaaaacacctggagtataagacatgatcacgtggtcaggagcaaaatattgggcactgacgataaatacgaacagtaggcaaa
gatg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1815 chr1 161252581 161252894 RIP_Alu_chr1_161_01 0 - pAlu1-161216853 NA NA SINE Alu Sp ggtgctgctgaaaagatacctgaaaatatggaagtgactttggaactgggtaacaggcagaggatggaacagttgggagggctcagaagaagacaggaaa
atgtgggaaagtttggaacttcctagagacttgttgaatggcttcgaccaaaagcctgatagtgatatatacaatgaagtccaggctgaggtggattcag
atggagatgaggaacttgttggaaactggaacaaaggtgactcttgttatagtttagcaaagagactagcagcattttgtccctgccctagaagtttgtg
gaactttggccctgagagagatgatttagggtatctggtggcagaaatttttaagcagcaaagcattcaagaggtgacttgggtactgttaAAGGCATTC
AGTTTTGGTGGGGTGTGGTGGCACACACCTGCAATTCCAGCACTTAGGGAGGCCGAGGCGGGTGAATCACCTGAGGTTGGGAGTTCGAGACCAGCCTAAC
CAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGTCTTGGTGTCACATGCCTGTAATCTCAGCTGCTCAGGAGGCTGAGTCAGGAGAA
TCTCTTGAACCCAGGAGGTGGAGGTTGTGGTGAGCTGAGATGGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCTTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGGCATTCggttttaaaagggaagcagagcataaaagttcagaaaatttgcaccctgacaatgtgatagaaaagaaaaacccattt
tctggggagaaattcaagctggctgcagaaatttgcataagtaacgaagagccaaatgtcaatccccaagacaatgggaaaaatgtctccagggcatgtc
agaggttttcacagcagcccctcacatcacaggccagaggcctaggagaaaatggtttcgtgggctgggcctggggtcctcgagcggtgtgcagtctatg
gacttggtgcgccacatcatagctactccagccatgactaaaaggggtcaagatacagcttgggcttttgcttcagtggtggaaaccccaagccttggca
gcttccatatgat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1850 chr1 165891694 165892007 RIP_Alu_chr1_165_01 0 - Ya5ACA733|pAlu1-165855970 CCTTGATTGCCAACACTGAA GAAATTGGAGATTTGGGGGT SINE Alu Ya5 cttatttgggacacctagctttgcggagcagatggttttcccagtaaactcttagattctataggtatcacatttcagggtcaagaattacgcatatcct
cagtataaactctgtaaagactttttttctcttgtttgatggaactcaaaaatggagcaataatagttatcaacaagcaatgagtctgagtcctcaggct
ttaatggcaaccaacaaacccatgctccttattgcagaggaagagtgcattgttgattcgctttatatccccaaatagaaaacacgttaagggtaatcct
gggaaattatgcttacttcaaaccttgattgccaacactgaagtgtctaaatagcacttcaccatttttctggttgttttcttaGAAACAGTTCACTTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAACAGTTCACTTGCttccttcctgtgataaatgccatatttattttagtatgagtcaacctacactttttttatattgcctctct
ccccagacccccaaatctccaatttctcacaagtgaatttaggcaaactaaagaagacatctctgttccgtgagtattaaaatcaaacatttttaaatgt
aagttataaaaataacactttcattgttttcttcctaattactaaagtagtccatgtttattacccctattccacctccaaaaaaaaaagaagaaaaatt
atggaaaagagtcaagacctaatagactaaaaattttaaaactattcttgtttgcctacttctcagaaataaacactgtaaaataaacattttgacctga
cctcaaaccattg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 500 175 NA intron
1866 chr1 167992893 167993199 RIP_Alu_chr1_167_01 0 + Ya5NBC237|Ya5NBC220|Ya5NBC159 GAGGGTCTTTCCTAGGTTTTGTTT ATGTCAGGTGTCCCTTATGGAGTAT SINE Alu Ya5 tttccaccaggcctgaggactgggggtggtaggcacaatggaaatgttgaaatatgggccaaatttcacaaacatcttgaataacctggccggtaaagtg
agctcccctgtcactgtgaagttcacaggggactccccacagtgggataattttttgtagaagaattttccaactgccatggctgttgcttgcctgcagg
gaaaagcttcaacccaacgggaaaacatgcagaccattacaaaaacatacttaacaaccttgagatgatggcagccagataaaatcaagctgccatacct
caaagggtccagccggaaggaaaaaatgaccgtgggccccatggagggtctttcctaggttttgtttgggacaaatagcacattAAGAGTAACCTTTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCCTCCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTAACCTTTTTGtgccactgtgaaggatggtttccagtaatattgtttacaccagggtattattttatctagattccaatgggttagatt
atgaacatactccataagggacacctgacatcccattggaataatgggtttattattaggtccacatcatatttcactttcaagagacaagtacctccct
gcctgtttccaagtagatttctcttctgtaggagctatgctctgggtttctttcaacatgtttttaagtatttggggttttatggccatttcccagattg
ggactggtggctcggatgctgctcttttagctgtagcttcagccagttggttaccctaactttctatggtgtctaattttgaatgacctgggattttcat
agttgc UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate sequencing|Candidate screening|Selective database search followed by genotyping NA 60 410 88 NA intergenic
1921 chr1 175129267 175129268 RIP_Alu_chr1_175_01 0 - pAlu1-174978468 NA NA SINE Alu Yc1 agtaagtagtctatcatactttcttctccaaaggcaggcagactgcctgtaactggtttggctggggcaagtgtgtagttttgattagaattttgtaata
tcttaaactgggcctggtgccacagctcatgcctataatcccagcactttaggaggctaaggcaggaggattacttgagcccaggagttcaaggttacag
tgagctatgatggcaccactgcacgctagcctgagcaacagagcaagaccttgtctcttaaaaatatatatatattcaatatatatgtagaatatatata
tagagagaacatcaataagttctgaattaagatcttttatttaaagctatcacagatgaactctaaatggatcatagacttatatataaAAGCTAAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGCTAAAATCataaaacttctaaaagaaaacataagtgaaaatctcttgggacataaaaaattcctctgcaaacattgcttatcaggatgtaaaatggc
acagcctctttggaaaagtttggtagtttcttacaaacctaaacatgtacataccatagaacccagcaattatactcttgggcatttaccccatagaagg
gaaaacacgttcacaaaaacctgtatctaactgttcacagcagctttattcatattaatgatagcaaaaactggaaacaacccaaacgtctttcaatggc
tgaatggttaaacaaaccgtagtacatccatacaatgaaatactactcagcaaccgaagaaacaaactactgatacatgtaacaatttggatggacctca
Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1935 chr1 177024659 177024970 RIP_Alu_chr1_177_02 0 - pAlu1-176813158 NA NA SINE Alu Yb7 actaggataacttttcaaaacatgggacaataagacataagcaacaaaaagttaaaaagtcagagaattaagtgaaaatgtttttattagtttttttttg
cctatttgtttatgcaatcagtgttaagttgtcatcagcttaataataatgggttataagatacttgcaagcctcatgataacctcaaatcaaaaaacat
atatacaaaaataaaaagcaatacattaaaatataccaacagagaaaactaccttcactaaaggaagacaggaagcaaggaaagaagaaagagaagacca
gaaaacaaataacagaatggcagaagcaagtccttacctaatcaataatgacattgaatgtaaatggactaaaaactctcctatcaaAAGACATAGAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGACATAGAGTAactgagtggattaaaaaatcaagacccaatgatctgttgcctacaagagacacacttcacctataaagttacacac
agactgaaaataaaggaatgcaaaaagatattccatcccagtggaaacaaaaaaagagcaggagtagctatagttatatcagacaaaatagatttcaaga
caaaaactataagaagagacaaggtcattatataatgataaaggggtcaattcagcaaaaggatataataattataaatatatatgcatccaacactgaa
gcacccagatacataaaggaaatattattagaggtaaagagagagagagaccccaatacaatagtagctggagactccaacataccactgtcagcattgg
acagatctttc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1939 chr1 177589222 177589223 RIP_Alu_chr1_177_01 0 + Ya5-MLS09 AGATGTTGGACGTTGGCAGTAAG TAATCAACTCTGTCCCACATTACCA SINE Alu Ya5 cgttggcagtaagccgcagcaaggcagttaggaaagtacgtgagcctgatgacgcgaaggtgatgcctccatctgtccgcttagtggttattaaattgct
gggaaagacctgcctttattttcctatcatcttttccccattactttgcattattcaggaaataattatttattcccaaatgcagttttctaagcagtga
ccacaaaaatttcttattctaaggaaaataattaagaaaataaccctatctgtggcattgttttaaaatgtgggatacaaatctggtaagcagatttcag
gtcattattgttttcttttaatggtttacatgaaattttcctctcaaaaaacaagtacctcttactgtataacatttgagtttttaaaattgagatagca
nnnnnGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA
AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCNNNNNNNNNNnnnn
ntctgagagaaaaaaagaaagttgaatttgtagctctctcaactacaaaatcaccacacttttctcaaatctaataggaattcagtgtcattacagatac
ggtctctagtgaccaggtgaagacaattgaagctttggtagaacttctgcaaaagttaggtaaagaagaataaatccaatttatcagctttgttcatatt
ctttttctgagtgatctaaatttttcttgcttgtgatcattagctaagacaaggagtgttaaaggttttctaaatgcaaacacatacgtttctgcatttc
agaagtcagtcttgatagtaaatcctacaaactctcaactttctgcattgtattttaagtctatacaatgttagagcacatggtaatgtgggacagagtt
g Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization incomplete repeat sequence TSD unavailable 57 1134 813 NA intergenic
1955 chr1 179683680 179683965 RIP_Alu_chr1_179_01 0 - 238935|Yg6AH108 GCGAAGCATGTGCCACACCATG GTTAGGGCTTTAAGAGTGTATGAG SINE Alu Yg6 aatggcaaattttgttatgtatattttacaacttttttttttaggaaagtgaacaatgcacgttggaatctatagtgcaactgctagaagaatagtaaaa
gaatatataacaagcaagctattcgaggtgaaaaatcaaatagaaaatgattcctttttacctgtctatgtacaatgcaataaaaagttattaataaaaa
tgtattcaggtgaaaaatatactgaaaatgttcactaaaataatagtaaaaattgtgtgttagggcattaagagtgtatgagatttgttggcctcagttg
tctaaattctctatactatggctattggctcataatatactgctttgtcataaaaccacctctatcatgtaaaaaatcttgcttAAAAAAGTGATTTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGTGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGCT
TGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGATTTAC
Tgtttcaagtggatatcagatctgagctgtttgtgagacaattattaaaagaaccactaatagaagtcacagtttctatcaacttagaaatctttcaaaa
cagaatatctctggttttcctaaccatggtgtggcacatgcttcgctatagcaagttgtacttaggcattttagataaaaagtaggtaactcatctggat
aatttactcataatatgttcactttcagcaaaagcttaaccaatatctgatcagtacttggatgaaaattaagtccatgcatcaacacattagctacaaa
aggacaagttcttgttgtgtctaatataaattctctgttagttttcagttgcagcacacaaaaaaagttcagtttgttctagaac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Trace comparison plus genotyping|Candidate screening NA 0 0 0 NA intergenic
1971 chr1 181668710 181669016 RIP_Alu_chr1_181_01 0 + pAlu1-181457211|Yb9NBC50|Yb8NBC299 GTTCCACAAGTACAGGAGAAAATGT GAAGCTCTTTAGGAAACCAAATCTC SINE Alu Yb9 atgaaattagaaactacctttacaaattgggctcctgctattgcactttctacctgtgaacccagttcaaaccttcccagagattacaataaagtaaaaa
gctcagtagttcacagtaaaagataataaaaattactattgtcatcctagtagttactattactagagcacctttgatgatgtggccctcttacagccaa
cgtccatagtaaaaagaagtttttcatcaagaccagggcttgattcatcatctaactccatgggatttatcaaggcttgtattagaagccacaagaggga
aagtcactctttgttccacaagtacaggagaaaatgttaatctgtctcagtctactgtcttttctgtctttgtggttgactcttAGAAATCACAACTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGGGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAAATCACAACTCACaaaatccttcatggctttgcaacatgagatttggtttcctaaagagcttcccatttctaaagtattggtttcaattca
caaagaccaaaggaaatagaaagtaattattgatactagcaactcctaatttgcagtagttttacttatttgaaactcctgctagcttccttggtagtct
ggcatgcttgaaggcattttttttcacttaaaatataaagtgatcaatatgcatttgtgcactattcatagtggaccctctttctcctgtttcctccatc
cccactactctggaggagctgcaatttctcacttcttacaaaagcctattcatgtctacaaatttagagctgagacaaatactataatctttacccactt
tctact UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening|Genome comparison NA 55 460 138 NA intron
1974 chr1 182104763 182105091 RIP_Alu_chr1_182_02 0 + Yb8AC992 GTAATGACACAGAAGCGGGG CTCTGGCCACTCCTTCTCAC SINE Alu Yb8 tatcagacatctaagagatgaatctggagtttaggggagaggggcagggtggggctatagatttgggagtcattagcttatatacctggtatttaaaatg
tggagaccagatgagataatctagggagtgagtataaagaaaagtggtccaaagactaagctccttcgtaatgacacagaagcggggaagggaagtgctg
gcaagggaagggcatcgtccctttaaatgatatggaatgggggaagggcgtggtccctggctagggctctatcccctggcctgtgcctgcggacctcggc
gaggacaggcatttttgttttcctgcccaaatgttgcatttcccaagaccaccctggcctgccaggcccccattctgtgcctataaaaacCCCAAGATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAACAAAACAAAAAAAAACCCAAGATTCtagcaggcaaacacacaagcggctggaagtcgagaggatgccgggagcacaccgcaggcact
ggcacgccagcaggctatcgaccagcagaatgatgtggagtttggcagggcagtcggaggagagcctgggctgctaagcagacccagggctttctggaaa
tgttataaaacaagtgaagtttgtggtatataaattatccctcgagttaacagcctcggccgtttacaaaaaaaccacacacacacacacacacacacac
acacacgacggaaaaaggaggcaaagagatggggagtaactagtgaaggatctgtgagaaggagtggccagagtaaaaggaataaaacaggaaattgtgg
ggtcctggcaaacaactcagtataattc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 906 568 NA intergenic
1977 chr1 182498473 182498783 RIP_Alu_chr1_182_01 0 + Ya5ACA745 AAGGTTTTGTTCCTGTCATAATGTT TGGTCCTAGAAGAAATGCACAA SINE Alu Ya5 taaaagttgtctctttgttttttggttggttgtttttgagactgggtcttgctctgttgcccaggatatagtacagaggcacaaatctcagatcaatgta
acctcaaacctctaggcttaagcagtctttctgcctcagctttctgattagctgggacaggtgtgtgctaccatatctggctaattaaaaacaatttatt
tttgtagagatgcagtctcactatattgcccaggctggtcttgaactcctggcctcaagcagttctcctaccttggccttccaaagtgctgagattcaaa
gctaatattgatatgtaaggttttgttcctgtcataatgttaattgttacctagttgttttatagtctcatttatgcaattgctttatAAGACTTGTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGACTTGTTTTatacttttatgttctttttataatggtgggtattgacctttaatttcaatgtttagatttcttttgtgcatttcttct
aggaccagtctggtggtgatgagtttctttagcatttactcgtctgggaaagactttacttctccttcatttgtgaagcctagtttagcagaatgcaaca
ttcatggtggacagtttttttctttaagaattatggaaataagaccctaatctcttctacctcataaagtgtctgcttagaagtccagtgttagtctgat
agagtttcctttataggcaattagatgcttttctcttgctgactttaggctgatgattgtatgtcttgcttaagtacttctttcaatatattttcctgaa
gttctttgag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 491 169 NA intron
2001 chr1 185726621 185726940 RIP_Alu_chr1_185_01 0 - Yb8AC998|pAlu1-185461323 GCAAGTGTCACTTTCTTTGAGC CAACCTGCTATAATCCTGAATAG SINE Alu Yb8 agtattaatgtaatctcttatatatgtatttaaatctcttttattcttggaaatcatcatggttattttggtttattaaatgaatgacatgttaaaaaac
aagccttcatctctctaaaaatgtcatattaatgtactcacataaagaaataatggaatgattaaaaattgacaatttttcttaatgtatttgtatatta
taaaactggtagtctgtgcacctgccaccagtaatctgcaattatccattgcctgaaagtctgcaatatgctttataagccaaaaagtaaagctgttttc
aaaagagaacacaaaatagaatgcaagttgtcactttctttgagcagccatctgtcttagaactacttttctgcaactgaatatAAAAGAAATAGAATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAAATAGAATTGagacaaattgtctattcaggattatagcaggttgttatgattttaaataatgagatagatgtata
aaagtattaactccaactatcatatagaagattgcttaaataatatacatttaaagttattagtaacactttataaaatctttcagtttgatcacagttt
tagagtatagatacactcttacgattagcatgttatctttgcaaattatctgcatatttgtaaaaagccaaatattcaactgcatgaggattggcattgc
aatataaggattgaaagttagatgcgtggtcagaagaatgtcattttcaaataaattgaattgtttgtgtaaggggggcaacaaaggcgaatgagtaagt
ggcatttggtttaaattta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 447 112 NA intergenic
2016 chr1 187593422 187593719 RIP_Alu_chr1_187_01 0 - Yb8AC1011 GCCTCTTTTCCTGCTTGAGA TCTTGGCTGGTGTTACATGC SINE Alu Yb8 tgactttgctcagtgtatgaccccaggcatgaatcatgatttttttaaactaaccatgacactcttatcccttctgtcatattggtaacattcccaacct
cttctgcagccatagatgtccaattgagcatgctctaaccaatgcagtgtaaaagcttcaatgcttgtgtgcctcaggggatgaaaaatgcttcctaaaa
aaaatgtgagaggcaatcagagaatggaaaagctcttactcatgtgcctcttttcctgcttgagacgtttgattgtgagaagttgaagttattctataac
tttcatgagactgtatttcctggacattggaatccaaagcaagggactacagagtaattcgacagagcatacttgagaatcaaatAAAAAACGTGGCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGCGGAGCTTGCAGTGAGCCAAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAACGTGGCATGtaacaccagccaagatttgaatttgaacaggttattttacctgattttgtcatctgtaattaaataaacctaaaagagtgaatacttt
gagaacaaatcaaatagatgtgccactatatgttaaaaaatacaaagattactagttaacagttcatcatatggaatttaacgcaaatatcttgtggcta
ctttaatttgaaatatgtataatttgaactggatatatttgtatgaaaaatatacaatgtactttcagaagacgcactacacttgttcaaacattataaa
cactatatgtgtgtgtgtatatatatatatttgtttctaaatgtatgagaaagtttaaagaacatcgtaacaaaataaacaaaaaagcttaaatgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 482 170 NA intergenic
2021 chr1 188312438 188312439 RIP_Alu_chr1_188_01 0 + pAlu1-188047238 NA NA SINE Alu Ya5 gcagataggctagaggcatgttttgctgtacaaaagatgttttaagataaatatccagtaataatagtagttatcttctataattaatgtttaaatatgg
taataatattttcaccttatagaaataaaaatttttctattatttacaaactgtaaacaagtgacttctattttgaatatttactagttcatacattttg
tacttcttccttgtatttatataaaatttatagtgtcagatataatgaaaaatacaattgcaaattgttagagaaaagtatagcattttaaagattaaaa
attatatataaaatcatgtagaagttttataactctttgcttatgtaaaatttactggaatcattctaatattctctagaataaattTAAAATAAAAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA
AATAAAATAAAATAAAATAAAAGTAaaatttatgctaaataattaactatttaatgattaacgtaaaaatggatgaatggttaggttaggttacatatat
cagactcttctccagagtacagtagttcagtttgacttcaatttaccccattttgtgtgaagctcttttccagaatattttgataaagaagaacaagtga
aaattaaataaagcaaacaaacaggaatggaacacatatgtatataacatgtatgtctgtatgtatcattatatttatgtttctatgcatatatgcaaat
gtgtgtatgtacttgtgtgtgtgtgtgtataagtatttacttctccaaattcagtgagaaacactaatctatcaatactgaaaaactagtgaatctcaag
catgataaaaaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2061 chr1 193510849 193510850 RIP_Alu_chr1_193_02 0 + 2978 NA NA SINE Alu Ya1 aaccctcgggggtccagttctacactgttctttccctctttgcaataaatcttgctgctgctcactctttggttccacactgcatttatgagctgtaaca
ctcactgcagaggtctgcagcttcactcttgaggccagccagtgagaccacgaacccactaagaggaacgaacaactccagatgggaggaacgaacaact
ccagatgggaggaacgaacaacaccagacatcccaccttaagagctgtgacactcactgaaggtctgcagcttcactcctgaagccagtgagaccacgaa
cccaccagaaggaagaagctccaaacgtgtgaacatcagaaggaacaaactccagatgcatcacctttaagaactgtaacactcaccgAAGAATGAAGCC
ACGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAA
AAAAAAAAAAAAAAAGAATGAAGCCaagtcagtgagaccaagaacccactaattccagacacactaccattactaaaacaaaatgccatggatctgggaa
gcagcaggcttgagcaacatcattactggagtgatgtatagcatatgcttcagtgaaacaaaggaaattcaggtttctcacacacacacatgctgatgtg
gtttgtatctgtagaaaaaatgcatcctgtatgacccagtggtggtaggacaaagaagtctgcgtgtgagttctatggatggatccctcaacgaacaacc
ctctcctactgctgctgtgccctttgcctgtgatacagcctttttgtgagcataagttgtttgagtcctgtgaattccttcagcaatccaacaccaacat
tcttaccacctgg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2063 chr1 193743323 193743620 RIP_Alu_chr1_193_01 0 + FXIIIB TCAACTCCATGAGATTTTCAGAAGT CTGGAAAAAATGTATTCAGGTGAGT SINE Alu HS-1 gctgagagcactgtgttcagttactttcttcaacaactacttattaaatgcctatgtgtcaaacattatgctggaagtgctacaggtgatgaaaatgaac
aagaattattacactcattacaaaatagttgtgaaaatgaagtcgaatagcactataatttacgatgtcactgttctacagaacatgagatttaaattaa
aataaatttaaaagttgattcatggacctttaactttcagctatgacagaggagattatatcaaaccagcacttctattaagaaccagaaaatctgaaaa
acaggaagcatttcgaggtatcagaaaacctccaaggaacttagtcaaggaagtaaggttctggaaaaaatgtattcaggtgagttcaacaTCTATGTGA
GGCTGGGCGTGGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACAT
GGTGAAACCCCATCTCTACAAAAAAAAAAAAAAAATAGCCGGGCATGGTGGCATGCACCTGTAATCCCAGCTACTCGGGAAAGCTGAGGCAGAAGAATCT
CTTGAACCTAGAAGGTGGAGGTTGCAGTGAGCAGGGATCGCACCACTGCACTCCAGCCTGGGCAACAAAAGGAGACTGTCTAAAAAAAAAAAAAAATTCT
ATGTGCcatttttttctcttgaggtgtttgttgactctaagtctgacctgagaggttagatgatagagaatggtaagcttaggcatacagccagcagaac
ttctgaaaatctcatggagttgaagatagaaaaatgagaatttcggtaaaccaaagcagccaggacttgaagaataaagaatttagaaggataggaagtg
tagagatatgagtttgaggctctgcactagcttttccctaaggtactgcttatccttgacttgtatagaggcataggatgagaagccaagcagaaagtaa
ataaaaagttacagtgggcatttggcagtctcccagtaatatcagagacagtcaaggagaaaaagctttaatacacacaacaaaccctctgtaaaga UCSC - Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.PMID: 8576959.
Hybridization plus genomic blot analysis NA 0 0 0 NA intron
2066 chr1 194128299 194128300 RIP_Alu_chr1_194_01 0 - CRB1 CTCCATGTTTGTCCGAACGC TCTTGCTTGTCAGGTAGGC SINE Alu Y tttagtcttacatcttggatacagcctttgaagaatccaccattaagttcagtctcttgcttgtcaggtaggccaccaatgtagatgacatctccctttt
cgattttccacgtagaagcagaaataaatcctaggttttgtgaagactgatacagttcaattttatatggcttgattttcaaagatatcaagtggacatt
tccatcattaagaacaaattttactactaatttgggagagtttggagtcagcattgctagtctgccgcgctctagccagacacggatatattgataagtg
ctgttttccaaagctagaagtaagcctgatggttgaagcgttcggacaaacatggagaggctgatggtgtctccatagctctcatcAAGAGTAAAGATGA
NNNNNNNNNNAAGAGTAAAGATGAcataaccagtggagtcatcctggccaaatctgcctgccacatactcttcaatgtcaaaatagaggaggaggagaaa
aaaaaagaaacatcttaaggctcaaaagacagaagggatggaagacgaaaattatacatttcacacacacacatgcacacaagcatacacactcatacat
agcttttaaagttcaggacaggtttattaaatagaataatgatttggcctctttctggacttctgagtttactttaaccctaaaataactatattttggt
ttgtagtttacacttcaggcatattgatcacaaaacagaccaaaaagatctctgcactgataaactaaagaatctcccctttgctgccctaaaatatggg
ccttaatggt Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.PMID: 15983781den Hollander AI, ten Brink JB, de Kok YJ, van Soest S, van den Born LI, van Driel MA, van de Pol DJ, Payne AM, Bhattacharya SS, Kellner U, Hoyng CB,Westerveld A, Brunner HG, Bleeker-Wagemakers EM, Deutman AF, Heckenlively JR,Cremers FP, Bergen AA. Mutations in a human homologue of Drosophila crumbs cause retinitis pigmentosa(RP12).Nat Genet. 1999 Oct;23(2):217-21.PMID: 10508521.
Direct sequencing NA 60 0 0 Retinitis Pigmentosa exon
2149 chr1 205079887 205079888 RIP_Alu_chr1_205_01 0 - pAlu1-205334897 NA NA SINE Alu Ya4 ttgagggtatgaaaatccaatctgtctggagtggtgtggggagtttatacactatggatctctttatataattgggagcaatgtggcctggatggctaga
gtgatgggtaagagcaccttccccaactcaggactggcagcaggaaagtaaaaaccctgatgagctttcatctttgtcccctctaaggcaaacaaaatgg
aaaactcatgccctgtgtatttcaaattctcaacctgatacatcaaccatagttatagatattagttatagcaataaccctgctggttccacagaattaa
gaaagtcagcagaaaacttctgcagttccttaagagaggcaaggtagaatttgccttagcagaaaaactaaatcagacttgcaaataaAAGTAAAATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGCGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAGTAAAATCTGtaagaccacattttttaaaacatttgtttattcattcattcattcatttatttacccattgacatagtttggctgtgccccca
cccaaatctcatcttgacttttactcccataattcccacatgttgtaggagggacctggtgggagataatttgaatcatgggggtggtttcccacatact
gttcttgtggtagtgaataagtctcacaagatctgatggttttatcaggggtttccactttggcatcttcctcattttctcttgcagccaccatgtaaga
agtgcctttcacttcctgccatgattctaaggcctccccagccatgtggaactgtatgtccaattaaacctatttttcttcccagtctcaggtatgtctt
tatca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2161 chr1 206683715 206684017 RIP_Alu_chr1_206_01 0 - 15439|Ya5ACA759|pAlu1-206934322 CCCACAATAAACATGTGGCA CAAGCAGCTTAAACCAGGCT SINE Alu Ya5 gtctgtttttttgtacagccagcatgctaagaaaggttttacatttttaaaaagaattgtaaaaaaaaaaaatgcgacagagaccatatgtggaacctaa
aaaaaaaaaaatgaactctctggcactttacagaaaaagtttgccaacccctgctttagacaatgaaatgtaaatggaagtggcatgtgtcaattttggg
caaaagctttaaaagacaaggattagttttctatgctctctgccatgacaaccaagaaagtttcagaaagaacctgcccaatcagtctggatcttacagt
gaagaaaacatggaatagagccataattgacccacaataaacatgtggcataagtaagaaataaacctttgttgtgggcatttAAAAGTTTCAGGATTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAGTTTCAGGATTTGttacttcagaatagcctggtttaagctgcttgatatgtatcaatgtaatatgagttactacgcatgcctgaaaataataaa
agtgcatttatttaaagaatatttataattcagtcatcttaataattactcagaatatatttctttcttcttttttttttttttgaaatggggtctcgct
ctgtcgcccaggctagagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctg
ggactacaggcgcccgccaccacgcctggctaattttttgtatttttagtagagacagagtttcaccatgttagccaggatggtctcaatctcctgacct
tg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison|Candidate screening NA 60 421 101 NA intron
2166 chr1 207350423 207350732 RIP_Alu_chr1_207_01 0 - Ya5ACA766 CCTAAACACTCCAACCAAGCA CCTCCACCCTCTCTCAATCA SINE Alu Ya5 gcaatgaagacagaatggcttatctgacaaagatctaaagcaacaacaaaaacaacaataactttctataaaccctcattattttagaggtttggagaag
ctaaatccttcacagagatgcttcccaagattcttgtaagctgagtatggagaggagggggtaccccactgcactgccatcactgtggtgcattgctcca
cattgctccagggacttgaagttgctaggtaaatattgctgccacttgccatataataatgttgtttgctcatgcttagcacagagggaggaggctatgt
gtcagtgtcaccctaaacactccaaccaagcattaatactcatacagctgttccatctgaagcaattaaactaagtccgcacttttAGAAAGAAGCTATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCCGTGTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAGAAGCTATAatatgaataatctagaatttcagaaatgcaaaaccacttgtatcaggtagtgcacacattacctgattgagagagggt
ggaggcggagaccagttctctttcctaattctgtgtttgcttaagtaattttaaaaattggtttacagtccccgaagacactggcagctaggaaagttta
ttgatctttctaaaggaaattttcataactttatagtgtctagacagagggattggttgaatcataaattgtggtaaattaaggcagttgttatgataat
gatatgaagaagttttactggcatgcaaaatgtttcaaatataactttaagtgggataaaagcagaatatatagctatatatagagtaaccttaactaga
tcaaaatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 493 172 NA intron
2213 chr1 213413262 213413263 RIP_Alu_chr1_213_01 0 + Ya5HS2.43 ACTCCCCACCAGGTAATGGT AGGGCCTTCATCCAGTTTGT SINE Alu Ya5 ttttctgaacccttagaatcctagcaggactggaagaaaggttaaagatctatgactaattagaaagataattttttgtaaagaaagaataactacactt
ctcagagtgcccactcattactaaaagctgtgtgctttgagtcagcagacctgaaaccaacaagatgcatgtgctgcttttcttgtttcggcatctaagt
tacttttgaaacacagtagtgtaggagagaactacttgttatggactaaatgtgtgtattcctccaaaattcacaagttgaaatcctccccactccccac
caggtaatggtattagcaggtgaggcctttgggtggtaattaggtcatgagagtggagccctcatggatgagattagtgcccttatAAAAAGAGGCCAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAGGCCAGAgagcgctcttgccctctttccactgtatgaggatacagggagaagttgacagtctacaaactggatgaaggccctcgccagaacctga
tcatgctgacaccctgatctcagactttcagcctccagaactgtaagaaattaaatttctgttgtttataagccacacagtctatggtgcttcattacag
caggccgaactaagacactactgttggctgctaatttgcagaaatgtgcatctctcattgacccggctaaggatccttttattttttcctgaacattata
gaaataaacaagaccaatcaaacaaatattaggaaactggtatttaggaagagtagaaaaatcacccaagtggggccacactgatatcaactttacaa Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening|Library screen NA 0 0 0 NA intron
2218 chr1 214142485 214142772 RIP_Alu_chr1_214_01 0 + 18079 NA NA SINE Alu Yb9 tgaaacattagtaattatgatgctgatctctagtaagctaacctttcaacttacaaatcaataaaagctaataggtaaacaattttacttctagaaaaac
aaatctgtatcaaacaagaagtgcttatatttactaaagtatatatgattatggtgaaaattttccccgttatctcaaaatggcagcaaagagaactgct
cacctcctactataatttttctttataattagtgtacagcattaccttcggtaatctcaatcctttcacttttatcatcctcctcctttaaaatctttcc
tttccccaactatcttctcaagctttgctacttactaagagtgggtcccaggccagcatcatcagcatcttctgggagcccattAGAAAGGCAGAATCTC
CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA
ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTTGAACCCGGGAAGCGGAGCTTG
CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAAGGCAGAAT
CTCaagttcctcccacgacttattaaatcagaattgacattttaacaagatccactcccaccagccccaagatccgctgggagattaaatttaagcatct
ccgctctacacttggtggaaaggatttctagcctcacggtctgtgtctcttgttcttaccctttatatgttttcattggtcctcaggttaataaggttag
taagcatcttaaaaactattgatttcaaaacttccattttacagataaactagaaataaactttaatgcctagcacaagaccttacaagaaaaggccctt
aataaaagacaagttggaagacaaaggcaagatgacagagaagttgaagctaaaagaggttaaggatttagacggtttctatagcta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
2226 chr1 215174325 215174628 RIP_Alu_chr1_215_01 0 - Ya5ACA769 CCTGTCATTGATGAGTTTGAGG GCATTTAAAGACCGCAAAGG SINE Alu Ya5 tgcccaacaatataattgtctcaggaggcacaagtgactggaaaacacaagatcatacacagcacctccttcctaatcaaacactacagaatagtaagct
taagctcatataaacctttgcaaattttcaaaaaattctatactccatgatgctgactcaatacaatgttttcgtgactttgttttaaaaatgatagggt
atcagctttgtattaggtgaaatatacctgccaggtatatatgttaggtaaatacacctgtcattgatgagtttgaggaatgaaaaacacagatccttgc
taaacaatgtgaagagttctgtaactgagatatgaataggggattataagagtgaaagaagatagccaaagaaaattatctggAAGAAACAAAGCTTTTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGAAACAAAGCTTTTGcctttgcggtctttaaatgccttgctccaaatactgtgtgttgcttgctgaaaaaaaaaaaaaaaaaaaaaaaaaatcag
tccaattcagtctttaccaagctattttcttttttttttctttaactatattgagtcagaccatgacacaccccactggccctatgctcaatgccttcct
gggtccatccactcacccatgtcccagaccaaactgtgccctggcacagaaacctgagtctttcaaccaacacttcatataacatgcaacattcacctag
gagtttagtaagaggggatcaccttagccagacaaccagaattgtggctgtgactggaaggaggaggagagaaacaggaagaggaaaaaggtggaggaga
tgg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 484 164 NA intergenic
2235 chr1 216311718 216312021 RIP_Alu_chr1_216_01 0 - 865 NA NA SINE Alu Yb3a1 tggcaaatcaaggaaacatgtccattcacctcttttcatctggtgatttgcttcttcaagctaaaaatctcaagttgcagttctggcattagtttcttta
ggaaaactgagattgctttacaaggtctcacatcttcagttgaaagtcagatcagtttccatatccagaaaagtagcttcctctaatctgctgttttgct
ttctgcagtttcagttacctgcagtcaatggtggtcagaaaatggaaaattccagaaataaacaattcatgtgtttaaaattatgtgccgtttgagtagc
atgatgaaatgtagtgccatcctactctgccttccccagggaatcttccctttgtacagcatcaccatgctctaagatccaagttAAGAATGAGTCCATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGCTCCAGCCAGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAATGAGTCCATAaaattgtgaagaagggaaaagaaattctttccggttttgctgtcacacctcagactgcaagttacaaccacggtgtgtgatg
agagttaagatgaagaaggcattaaatttgtgtgtggaagacacaaatagaaatgcattctggttgatagcaatcagatttggtactatccatggtttca
gacatccactgggagtgttggaacatatcctcctggagaagggagcaactgctgttcttaaccgggtgaatctcacacccagagcttgctatttgcatat
agttctctatcactgatgcatttattaacaagatataccatcaagagggtttttgattaattgtttggcagtctcagtgtgtcctggctcacaagagcta
atc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA promoter
2257 chr1 219207586 219207587 RIP_Alu_chr1_219_01 0 - Ya5-MLS51 TGGAGAACTGTCCTTGTTGTGAGTA AGTTGAAATACAGACCCACCTAATTC SINE Alu Ya5 atgttggctaagctggtctcgaactcctggcctcaagtgatccgcctgcctcggactctcaaagtgctgggattacaggtgtgagccactgtgccggctg
actggttatttctttaggatcgattactagacatgacattaatacaatataaaaggatataaccatttttaaggcttatcatacacatcatgaaactatt
tttcaggatggctctaagaattcctagttctactaacagtgtacatatgacctatctaattctttcttttcatcctttgtgagttgaaatacagacccac
ctaattcttaaaatttagactttgatatgagacatataaactgaagttttcccactgagattatacatgttgtcttattcacttAAGAATTTACCAACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTTACCAACACaaaaattatactaaattattttacgaggttagcttgaattaaaagcattaatttctgt
tcatattagaaactgaaaaagagacaaaaggactgtgattataaaaccatacttgaatttatgagttaaagtatgcattaatttactcacaacaaggaca
gttctccataagaaaatggcaaacgaagcaattcccaagaaggcagtgataaatacaggtttccatggcagtccataaaaatcaggcccaggctgaacat
catcaggcaatgtagcaactagctgaatgttagaaataatgttagaaataatgagaaaccttaaagaagcttaccataaagcagtcacaaagactcattc
acagaaattctaaaccaactctatca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
2268 chr1 220699569 220699869 RIP_Alu_chr1_220_01 0 - 8542 NA NA SINE Alu Ya1 tggctctgtgagctctggtctagtgtctacgcagaggacaccaagcaggccctgggacacagcaatcctgagtgtgtttggagcagaaagcagcccatgg
tggctggaccacagggagagatggcctgggagagtcaggcaggagcctaatcatatggtttacagccctgcgtgtgtgtgttggggttgggggggggggg
ctgggtgtgtgtatgtgagcaacgtgtgagtcatgtgggatgggaggcccccttgcactttccttctcagccccttgccacctgacatccacactcacac
atcctcacaggcagttccgttttgaaaacctgatttcatgtggccagtccagtcttaggacaaatatatattcatagaaggcaatttAAAAAGCCAAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACGGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGCCAAGTCatctcaacccgagctacactagatgcacggctgtgtcagttaccagagtccagctcggtgttggctaatagtggaagcacaacttcc
attgccaaagctcagagacagaaactccggagatggagcaggcagataagtgtgtggctggcgcagagccaggccctcggagatgacgagcatgtctctc
accagccccttctgcagtgagtggctgtcccacgggtctctccagctgccaggggagaatgaattagggtgttgagaattacccaaacccaaggctgggg
agggtgtgactccatctaggccagtccttgtctttgctaatccagcatgacccaggcctgctgtggaatattttggaatatattggaatatttggaatat
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2276 chr1 221651148 221651451 RIP_Alu_chr1_221_01 0 - Ya5ACA637 AAATGCCCCCTACAAAGACA TGTGTGTCCCTGCATCTCTC SINE Alu Ya5 aactaaaatttaagcgtaagatagctaatgtaaccttgttgtacccattatgattgtcttcatcataccacttttttggaattagttgagacccactttg
tggcccaatattgtgttaaggactataaatcttttaagtgtatacttggagagatgttaattctctagatgttgccaagaaaatctttcctaccacaagg
gtcctaggacttcagctgttggataattagtttgttttctaaacaaaaagatttggaaaattattttaaaggaaagagggagaaaactgcctttttccct
taaaagaaaaaaaatgccccctacaaagacatattcactttttaatccccagaatctgaatattatttaatatggcaaaagaggtgattAAGAATTTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAATTTTAAgaggagtttatcctagagtatccagatgtaaataaaatcacatgtatcctaataagagacagagagatgcagggacacacagagga
gtaggtgatgtgacagtgtgtctacctttgagtcattgtgtccaagtgactgccatacactgattgactagagctgaggttatgttactttagtgactat
ttgaaaatgttacatttcctgtaatttgacggaacaataacagattagagtgctgtggtcgtaagccaggaaatgcaggcaaccaccagaagctggagga
ggcaagaaatggaatctgcccaagagtctctggagagtaagcaaccctgcccacaacctggatgtcagacttctggccgcaggtcctgtgaggaaataca
ttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 484 170 NA intergenic
2279 chr1 222069049 222069355 RIP_Alu_chr1_222_01 0 + pAlu1-222169659 NA NA SINE Alu Yc1 ttgtgttaggtttcaactcgattccacaaatattgttcacatttataacacaggtcctggcatatagtaaaagtgggcgagaccagctcagttatataag
attgtgggccaggcgcggtggctcacacctgtaatcccagcacattgagaggctgaggtgagtggatcacctgaggtcaggagttcgagaccagcctggc
caacatggcaaaatcccatctctactaaaaataccaaaaattagccaggcatggtgcctcgtgcctgtagtcccagctacttgggaggctgagacatgag
attcgcttgaacctgggaggcagaggttgccgtgagccaacagtacgccactgcactccagcctgggtgacaaagtgagactctgtctccaaAATATATA
AAAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGGT
AACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAATATATAtatataaaaaaaaaaaaagattgtgcattcagatacgaataataaacatattttctcaaataggaaagtgaacaataaatagcatg
tgctatatactgtgttaagcactagacgagctttttcctagtccatagcaccaacaccaccactctgaaatcacaacatcctacaaatgtagggttcact
ccagaatcctccgtgaccctcactgctccacacacacagtcaccaagccctgtcaattctatttccaaaagactcctacaatgcatcagtaccctttgtt
cacaatgctcaatgctcaaaagctttaatttgggccctccctagttcctcaactggcttatttcaaaaatctccttacctgtatctctcactgcaatctt
attctt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
2293 chr1 223909012 223909013 RIP_Alu_chr1_223_01 0 + pAlu1-223987819 NA NA SINE Alu Ya5 cttcttatgtgggtgctgcccatgactccccaaaacaattacaacagtaacattggagatcactgatcacagatcagtataacagaaataataatgatga
aaaagtttgaaatattgtgagaattacagaaacgtgacacagagaccatgaaatgagcacatgctgttagaaaaatgtcaaagataggctggggcatggt
ggctcatacctgtcaccccagcactttgggaggccaaggtgagagaatcacttgagcccaggagttcaagacagtctgggcaacatagtgacagcctcat
ctcttaaaaaaaaaaaaaaaagttaaaccaggtatgcctttaattgcagagcattcccaatcactcagcccaccactgctcctttAAGAAGGCTCTTTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAGGCTCTTTGTGgatgttctgtggttctagccctgcacattcccagtttcctcttgcatgattctaccttccaccgaaacagagcaagatctgc
ttaagatcctataaaaatgactttggcatgtgccctttgcctgggaacagctttttcagttgctgctgctgctgtgtaatatgttaggttacatggacta
ccattttttgttaaagagaatgacttccaagttcagtaggtgcttcttgaaaatatagttccccgtgatgcaataataattgattctgttatttcctatt
cttgttcttatgtatgtgacatatgacatgtaactgagacacagttcctatatttaatatttgttgtttgttccacaatcttttcatagatgggattagg
ttg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2296 chr1 224330841 224331135 RIP_Alu_chr1_224_01 0 + 33258 NA NA SINE Alu Ya5 ggcaggacgatagcttaaggccaggagtttgagaaaagcctgggcaacatagcaagactttggttataaaagagagattttgtttgtttgttttttactt
ttttttttttcgagacaaggtcttgctctgttgcccagactggagtgcagtaatatgaacacagcttattgcagcctcaacctcctaggctccagcgatc
cttcttcctcagcctcctgagtagctgggaccacaggcatgcaccatcatatccaggtaattttctttattttttgtagagatgggggtctcattttact
gcccaggctggcctcaagggatcctcccgcttctcaaagtgctgggattacaggtgtgagccaccacaccaagccaaaaaagtttttAATAAAAGCTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAAA
AGCTTCCcttccataacagaattttcattggaaactctcatctttcatgtgagaatgcctttattttatactctacatttttatttgagacattgtttac
aaactctaaaatccacaaatattgtgtacagctgaattatgttaacatattcttttttcattttttaaaatgttatttcttgtaacattggagttacaat
gaatttttaaagcaaattccagatactatatttcatccataaatatttcagtgtagacaaacattttatttatatatttatttaatcttattttattctt
ttagtggcagggtcttgctctgtcacccaggctggagtgcagcggcacagtcatagttcactgccgcctctaactcttgggctcaaatgatcct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
2300 chr1 224878908 224879224 RIP_Alu_chr1_224_02 0 - pAlu1-224957620 NA NA SINE Alu Ya5 cctatcttatctcttagcccagttgcccaaggtaccagtatccttatctgcaggtgagcatgaggacctctgtgttgaagacacatcaacctttggatac
agaatgcagagtctcaggagataggccaattatttgcattttgaatgctatctgtttctataccatatggtagtaaaaatttgcatggtatgattttaaa
aacttgaatttttaacttaatgttctatgttctgtagtaatctcattttcatgttaccaaaggaaacctgttatgaccagaataaattattttcccaaca
ttgaactaagaattcctagagctggggaaataaaggaatgtcctttgctgccagcctccttccttcctccttaggatacctctttaaAATTAATTATTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATTAATTATTAGtttggttttcccatttaatagagaaattatttaggatgttttctaaaatgtccaagtagctagctataact
tgctgtttattctttgattgacagtgactaatgtcatttcacagtggccaggaaatgtgggctgtatgatctccactttgagaggattttgacccaatgc
ctgggtcatttatgtggctggcctctggatatctgaaagtaatatgaatccttcatttgctggtttcaaagtactatctacctatcttcctgtctatcac
ataaatgtttccagtgatgccatcaatagttacagaaattgattgatttttatatatctgacctattgatttctaaacacaatatattaaaatcttctac
tatgattaccaatgta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2302 chr1 225121549 225121876 RIP_Alu_chr1_225_01 0 - pAlu1-225186851 NA NA SINE Alu Ya4b tccttgaggatggatgatgcaccccttaccatcccattaaaacctaatcacccttaccccgatcaatgccagtatcccatcccaccgcatgctttaaaag
gattaaagcctgttatcacttatctgttgtagcatggccttttaaagcctataaactctccttacaattcccccattttacctgtccaaaaactggacaa
gccttacattttagttcaggatctgcgccttatcaacaaaattgtcttgcctatccaccccatggtgccaaacccatatattctcctatcctcaatacct
ccctccacaacccattattctgttctagataaacctagctgaccccataaatcctaaatcctttccacactcccctgtccattccttaaaaAACAGCCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCCCTaaaatctgctcccacactagttctccctaactcatcccaacctttttcattacacacagccgaa
gtgcagggctatgtggttggaattcttacacaagagccaggaccacgccctgtagcctttctgtccaaataacttgaccttactgttttagcctagccct
catgtctgcgtggggtggctgccactgccttaatacttttagagaccctcaaaatcacaaactatgctcaactcactctctacagttctcataacttcca
aaatctattttcttcctcacacctgatgcatatactttctgccctcctccactacctctcagcaagccaaactcattgccttaactcgagccctcactct
tgcaaaaggactacgtatcaatattta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
2303 chr1 225266665 225266666 RIP_Alu_chr1_225_02 0 - pAlu1-225332040 NA NA SINE Alu Y agcagacctaccctaaaagagtggccaaaggttgttctctacgtagaaagaaaacaataaaagaagcaagtttgaaacatcaggaaggatgaaagaagac
agtaagcaaaaaaaaaaaatgggtaaatacaataaactttcttctcctcttgagatttctaaataatgtttgacgttgaaactaaaactataacattgtt
tggtgtgactcttaatgtatatagaggaatacttgagacaagtatgttctaaatggcagatgcaagggatgtaaaggcaggtaagattttttttgcttca
cacaaattggcaaaatatgactgtaagactatatatagactacaataagtcatatatagaaaatgtaatacttagagcaaccattaaaAACTATACAAAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAAAAAAA
AAAAAAAAAACTATACAAAGaaatatattcaaaaacacgatagataaaccaaaataaaatttttaaaaatgtttgttacccacaataaggcaggaaagag
caaacagggaaaagaaaagcagagagaacaaacagaaaacaaaaacataaaacaacagacttaagtcctaacatatcaataattactttaaacacaaatg
atctaaatacaccaattataagacagagattggcaaattagaaaccatgacctaaatacagcttgcctaaagacattcacttctaatacaataatataag
caggttgaaagtaaaataatagaaaaagatatactacacaaacattgaccccaaaaaacaaaaagcaggactgacaacattaatatcagataaaacagac
tacagagc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2319 chr1 227391897 227391898 RIP_Alu_chr1_227_02 0 + 16963 NA NA SINE Alu Yb8 ctgttcactgtatggatgtcagccattcattccacaattatttactcagggcctactgttagctatctcaggttccatgtgctaggaataccatgcaaag
tcatgctattcttgccacatactaggaatagcaagcaaaaaccaacacagaagacaaagatttgcctatcagatcaaagtcagctctgctaagcctattc
ttcccaaagggaagcaagcaggacaacatggctaataatagtggggtgcaggtcaatggaaaacaagagcccgatccagggtaacaggaaggcaaagctc
tatgacagatgtgccacagtgaatgacgtatggtggccctccagctcttgcagctggaacatttttatagtaataaaaattttaaattAAAAAAAAAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCNNAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAaatttgcaacagctgaaatatccgaacactgacaacttcctaaaggtagccatcatcatcttgactgcaggattggatg
tgtgccccacacagaggccctcgcacgggcctcccctcaagtcaccccatggtctcatcattactacagcactgaattgattactgtgcttatctgtaaa
gtatttaggttttctctattcaatttattctttccttttttttttattttttatttttgagacgaagtctcgctgtcgcccaggctggactgcagtggcg
cgatcttggctcactgcaagttccacctccagggttcacgccattctcccgcctcagcctcctgagtagctgggactacaggcgccagccaccatgccca
gctaatttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
2321 chr1 227609812 227610102 RIP_Alu_chr1_227_01 0 - Ya5ACA593 CAGAGCCTTAAGACGTGAGAGTT GGAAAGCTCAGAAAAGACAGGA SINE Alu Ya5 gcactgcactccagtctgggcaacagagagagaccctgtctcaaaatattaaaaaaaaaaaagaattacaaatattaaaatatttttacctgtgatcaca
gtgcaactatgactccatgttctttgtcacgtatgtattatcccttttaatagaagaggtgtttcctctgagcctttaaagcctaacataccctttttac
aaaataaggtaagacagcaggctgagaagccacctgccctttggcagagccttaagacgtgagagttggctgggtgcagtggcccacacctgtaactcta
gcactttgggaagccaaggcaggaagatcacttaaggccaggagttggagacaagcctgggcaatgtagtaagaccctatctcttAAAAAAAAAAAAGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGACattagagtgatcaaaagtcctgtcttttctgagctttccaggccacaccctctcccttgcttttgtgaggtgctgactcagtgggaatagtactc
ctggagtatcagtgagattttcttttaaggctcttcgatttaccatggctctcaaagaactccagaagaagagcttatctataaagaaaaaagaattatt
ctctaacctcaacttaggaatcaactcctacccagtttaattcagagctggccatctgcacccagcaggtcagagttctccctgagtgaggagttataga
tgttgacattctgtggcatgtcacactaggaaagagctatggtacacagtaacccttttctccagcttcaggaaaaacagattttcataa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 500 195 NA intron
2330 chr1 228729868 228730181 RIP_Alu_chr1_228_01 0 - 10270 NA NA SINE Alu Yb8 ttaagtaaacacctaaatgtcatcccaaggagaattgctcaagaatttttattagtttggatgaattcttccttccttcctttctctctcttgttttaac
ttcttcaaaatttaatacacattctctgtcctggtttagtctttccactttccactgggcaataacagaaaacagcttgcattgtacactttgtttaaaa
aattgtttccaatgaagcaccaggagggaacattaggagtctgaggtccaatgactgcagttggcttatcaggccagttgcacaagtcagctccagtctc
tggacctcggtttcctgatctgcaaatggaatcagagttatagtctcccagcttcaccctcagagaaagcataaaacatgggtttAAAAAATTACCCTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTACCCTTCatcgagtgtttggaggttaggactgcagaaatgcatcaactgacatcatcttctttgagaactttaggagat
ttaatgatatctaattcaaccttactaaatgcttgcaaggtacatgaacaatagtgttacacagtgagagatcaccagcttgatttatttatatataaaa
tatattattgtaattataatacattaatattaacatattatgaatatattatatactaatgtattactaattatatactaatgtatgatgtaatatataa
caatatattaatataacagacattaatctacatagcattatatactatatattaaaattatatataaaaatataaatatataatacataatatatataca
ttaatatagtgta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2341 chr1 230171890 230172205 RIP_Alu_chr1_230_02 0 + pAlu1-230192979|Yb8NBC605 GCCTCTAGGTGGAGCCCTTT GCCCCATTTATGGCTGTTTA SINE Alu Yb8 aggcaagtcaaacagttgtcaaaatccaaaaagcagcttataaccttaaaacatttagcaaacccggcacctgacctgcataatttagccaatctattta
tattttgacaacatctgcttttagccagtaatctttaatactgtttttatttctcaaagattaaagtcacatgaactgaaaggtaccacagctttttatc
ttccctttaaaaaatatttgatctaagcgcttatcttcctttaggtcaattagaggtctttttatagtcatcacacacaacacatatatagctacagaga
caggcagaagaaaacccagtcaccataagatctttcatttgccaatctcctaattggattattggcctctaggtggagccctttAAGAAACAGGGCTGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAACAGGGCTGGCtgggcgcggtggctcacgcttgtaatcccagcactttgggagcactttgggaggcaggtagatcaggag
atcgagatcatcctggctaacacagtgaaaccccatctctactaaaaatacaaaaaaaattagccaggcgtggtggtgggcgccttatgtagtcccagct
actcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgtagtgagccgagatcgcgccactgtactccagcttgggcgacagagcga
gactccgtctcaaaaaaaaaaaaaataagaaacagggctaggaaaacatgcagcttctaaggcctaataaacagccataaatggggcaaaaaacagattt
tgagaggtatctatc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening|Genome comparison NA 60 723 392 NA intergenic
2342 chr1 230377299 230377300 RIP_Alu_chr1_230_03 0 + pAlu1-230445829 NA NA SINE Alu Ya5 aagcaaataatttccctgataataactagtcagctagatgggttatactattgagttacatgtgcatttatcttgttttacaaattaccattagacaaga
aaaaaatcaattattacagagatattttaatgagctgtcttaaaaatacacttcttgttgaagtaaaatatccaaaatgaaatgaatgttaattataagt
gtacagcttgatgaattattacaaaatgaatatacctttctttactgcatctagagcaagaaacagaatattactggcatgtaagtgattttttcagata
ccactatacaggagatcttattaattttaaaataatcaaaaaagccactggctttccctctgaagcaaaggtagctccctatgcagatAAACAATGTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAACAATGTTTCaatgaaaatctaagtggatcctgtcttttacaaagaagctgtgtctagcctggtattctgccaggatgatcaagatagcttacatac
attctaatcagtgtatcatgtgaaaaatgggatcttatcatgcttcttggaagctttaggttttctttgtaattttaatatccctttgcaagagctgact
tccaggcaagatctctgtgctgaaattcccatatgttatgtatgtttacttgcttttccactagataccttaacatttcagtcatgattattttaaagtt
tcattctggtgaaaccaggttgtctctgcatctggttctattgatggctttatttcttcacaatgagctgggttttccttgccctttttttttttttttt
t Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
2346 chr1 230893946 230894247 RIP_Alu_chr1_230_01 0 + pAlu1-230962376|239259 NA NA SINE Alu Ya5 taccctcctcacaagtttattttctatcatacgtgcatattaaaatactgcatattaatttaaaagagaaacactgtccgaggccttctccattacatct
cttagaaggtttgcaaataaaagtcacataatttcacaactcatctttggtcacgtataatggtgaaacttttgttttaaaatctaaatatgttctcaat
ttcctttttataatatctgtcttaataagcaaattcaataactgagtttaaatatgaagaaaataattatgaaatgagtctttctaaaaagtaagcattt
ttgaaaaattattttttgtgtccattagggttacccaaagtttactataaggaggcaaaggaagaatacatcacctgaccaaagataaaacTGATGAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
ATGATGAATGactggatcatcgaagtggtcaggactaaaagacaccacacaggtacaatgagtgagcaagtcaatgacgctaaaggaggttgttctgtgt
aggtctttatcaagtcggataatcttaagatattattgtctaacagtgaggtcagccggtatttatcttttaacagtatacacttttctttgcattcctc
taaaactggccagactgcgttgcctaattattgctacaaaatacgtgaggcttttcgaatcttgtatttccacaggcatgattctgctgtatcaaaatta
tttttgacaactaaactctaattcatatttgatttttttctttccctctatcaaatctgtcacaaaattcagaatattttcccttcaaagacttttcatg
t UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
2357 chr1 232380632 232380954 RIP_Alu_chr1_232_01 0 - Yb8NBC485|238508 TGTTCTTGCCAGAAAGTTTGC CCAATCCAGGACTCGACATT SINE Alu Yb8 tttgaatgataaacaccacattctggataaggatgatctctaggaagaggccatgggagaaacatatcaatgaagtctcatatccataatgttgtcattt
taaatgcaagtcttattttgggataatttatggaaaaattgcaaatgtagtccaaagagttcccatataccccttcgtcccattccccccagtgttgaca
tcttacataaccatggtacagaaatgaacataactcagaaattaacactggtacaactaaacgttagattttattcagatttcaccagttttttcacaaa
cgccctttttccatttcaggatccaatccaggactcgacattacacttagcacacctatattgttttatatgtttgaaaagtttGAAAAAATGTTGGCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGAAAAAAAAAGAAAAAGAAAAAATGTTGGCAAactttctggcaagaacagaaacttcattatattgctttctggccattattggagggaacata
gtgcttatgagggaggctctggagataagacaagcaatccagcttcaaattctggctcaagcactctctagctgtgtgcttaatctctctgagcctaaat
ttcctcaactcaaaaatagggatgataacagtatgtaccacttaggcttactctgagatttacatggattaagtcacacaaggcaactagaaattgtgat
caagaaatgttagctattattattaattgcatatgtaattcacaacacaatttttctaaaaatagctcctttgagagtctctggagtccatcttaataag
aaatcacaaccttcattgtaaa UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 58 433 95 NA intergenic
2362 chr1 232920980 232921291 RIP_Alu_chr1_232_02 0 + 52547 NA NA SINE Alu Yb8 ttgagcttcctttttcgagtgatgccgaggaaaaacatcatagtgtcctagtgtcaaaaattaaagtctaagccaggcatgcttgtggtcccagctactc
aggaggctgaggtgggaggatcgcttgagaactggagtttgaggctagtctggcaacatagcaagacctgtctcttaaacaaaacaaaacattaaggtct
gacatttcaagtgcaatttcagaaagaaccctttacttttagttatttaaaatcaataccccatctactagaactattcaacttctacaacttattacaa
ctggtatttattgaggatatactctaagaccaatctgaactgggtattcttggacataaaaaatacaggaggaggaggtggaagttAAGACCCCAGGCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGACCCCAGGCAGaccttatagacttgttggagaggcagtgcacacagtttgattctcggatgtgtgtaaggctcagatgtgtaaaca
atttccatgatactttaaggaaaacatttcctaggacctttatcaatcaataaagttttaattactttaacgacatgcataagcatatggcaaatgaaga
taaagcaaaaatttgttccagctgggtacggaggctcacacctgtaatcccagcactttgggaggccaaggtcagcaaaacctgaactctacaaaaaata
caaaaattaaccacacctgtggtcccatggtcccagctgctcaggaggctgaggtgagaggatcgcttaaacctgggaagcagaggttgcagggaatgga
aatcgtgccac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
2383 chr1 235752308 235752309 RIP_Alu_chr1_235_01 0 + Ya5ACA630|14975 CCAGTCTGCTAAGACAGTTTTGAA AGCGGGTACAGTAGGCAGAA SINE Alu Ya5 accagtacacatgaattatcttacagttttcatgggataggagtgcagataagagttagctggtttctctgttcaaggtctcaaccaggtttaaatcaag
gtggggctgagctgtgttcttacctgggacttaagagtcctcttccaaatcactgattgttgacaggattcagttccctcaagctggagagctgtgtttc
ctgttttcttgctggctgttggccagggatcatcaacttcaactcctagaagccagcctcaggtcctaaccacattttctcctcctcttgcaaaatggca
gcttaggttttcaaggacagtaagagaatacctttcatttcgaatctctctctctatccagtctgctaagacagttttgaattacttAAGAAGGAATTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAGGAATTGGctgtcccatcatgttcaaatgtctcacccatgttgaaggagagggaataatacagagtgtgcacatcaggggccagg
aatcttaggggttatatttttctgcctactgtacccgctcactaaaatcttttctagcgaaaagggagaatgttttcacaaacagctatgataccaaatc
taatcccactattattatatactcccaacattttcaaaaaaaaaaatctgagtattaggactaaatacttagaatgtattaaaatatatactaaatgtaa
gatagtaagttttgtttaaagttgaggctcatgtttataattcgttgcctttttcttcaacagaacatttaaaatctcctgtatatttcatggaattgca
aatatgatgc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 55 498 159 NA intergenic
2396 chr1 237475914 237476222 RIP_Alu_chr1_237_02 0 - pAlu1-237446358|15544 NA NA SINE Alu Ye5 gctgaaaattatgaaaatacttgagttttgtaaaggatgcaaatcaaatgtgttctattttgcttgcttacagagtcctcatatcttatatttacaaata
ttttgcaatttttttcatgaatgcttaatatttttgtgcacctctaattcagatttagtttgtggatagctgtaggtgacacttgtagctgaggatgtgc
tctaatcctggggaggggtgcagacgtggaccgtaatggaagtaatacaggcttaggacagagcctggtccaggcctttgcactctgcagggggcacagg
taaggaagctcgtttgccgttcagatccgtggcatgggtgaaaaaataatgttgaagtttaagatcaatttaacatcatgtttAATAATAGTGGTGTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATAATAGTGGTGTTTAaattacatgccagtagaatattctttgcatgaaggatactattctttttaaactctgtgaaaatagaatttgggg
aggggagtcttgctatttattcattcaatcttttgttgaggggtgggcacaacaggcttcctggagtagataatgtttgaattgaactttatggcctcag
ttgggattcaccacaggaaaaagagatgaagatagaagagcattagcaaaatcatggaaggaagaaacagtatagcaggtagaaaactatgagcagtgtg
atgaggaagaattctgcttgtttgtttttgcttgttttcattttaaataatatactgctaggattcgacagtaataaaacctctactgcttctgctgagc
agacggag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
2398 chr1 237686594 237686893 RIP_Alu_chr1_237_01 0 - pAlu1-237657038|Ya5ACA614 TGGTGCTTCTTGCTATACCATC CAAACATTTTCAGGCTGGATT SINE Alu Ya5 atagatagatagataatgtttaattttggtaaattatgcatttgggaagaatattattatacagtagtaatgttttgaatatttcaactagatcaagttt
gcaatctttttttttttttttggtcttttatctctttactgattgtttttttctgcctggtccatcagttaataagtatatgtatggaaatctctcacta
caattttgaatttttatatatctccttttacttctaataatttacctttgtatattctgacactatttattaactgtgcacaagttttaaaatgtgtctt
cctcatggattgactgttctatcattatggaaagtgatctttatctctagtggtgcttcttgctataccatctactttgagattAAGATACTTTGATTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AGATACTTTGATTAGtatttttatggtatatatattttctatttttagtttcaacttttttatattcttatatttaaggtgagtctcttgtgtcatataa
ttattttttaaatccagcctgaaaatgtttgttatttaattggagtgtttagtccatttacatttaatgttattgatatattaagtttaaaatctagaac
tttacatttattttctaattaacccagcatattccttatttgttcttttttttttttttttacattcttttggatggattcagtattatttatttttccc
tttctccccagtactagctggtcagatacacattcttttaccattgtattagtgcttaccctagcttatgaaatataatacatccctgaaattcaagtc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 481 166 NA intron
612 chr10 3559025 3559026 RIP_Alu_chr10_003_01 0 + pAlu10-3669258 NA NA SINE Alu Yg6 ctgacatgaggcccttgggtctctgtgcctcagtgtcctcgagttccagttgagatgggtgcccatggctatggattgttgatatccttctggctctgaa
atttggatagtttcttctccaaagaactaagtgttactggaggctcttgaaagaaatctgcagcggcctgggatgttacacatccagccccagattaccc
caaggatgggcttgaacctcaccccatatccagcgtgaaatgacctgcaggcgtgtctcggggtctggatatcaaggcatccagtgactatggagcagga
acgaggccttcaagtcctgatggcgaatggccacttctgcacatcccctaaaaaccttatcttctaaagaccttcaacacattaaaAATTCTGTGAACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAATTCTGTGAACTTtactatttctaaaaatatcctaccagctccaccactaaatataacgtctcttccaacgatgagtcaaatgcattttgcatcaatg
gctctgcatacttgagaaacggagttgtttgtggtgaagatatttttccatggtgctgctccaacagaggtcatttctaagaaatttctaatttccctgg
agaaaaatgaatgcttcaaagtcaaagaagaaggattttttactccagagcaacttctaaatctttttcaaaactggctttttgcttttgagatcaaact
ttgctctgtccagtttcaaatatcttcctttttttctgtctctactccagcttttttaactgatgcaaactttgagtatcagggtaaaccactaacctca
t Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
620 chr10 4624811 4625120 RIP_Alu_chr10_004_01 0 + 238920 NA NA SINE Alu Ya5 tgttgcattttggcaaatgatatatctgcatctaataagattatcacatgaatcttctcttttgttatgtcaagatggtggatttcattgctttatgaac
aaacacctttacattcctgagataaaggccatttggccatgacacatttttatttttacaaattgctggatttcatgttccaatttaacgttttgctact
tatctgtttaaactctatcggtctcagttttgacctctgtaaaatgcattaattgggctttaacaatggtatttttgtaaaacaaaaatttactttacaa
ttatttgaaatataatttttctatggtcttttccagttttaaattaattagtttgaactatataatattgatattcaatctctattgaacAAGAAAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAAAGAataatttcatacagttcagcttaatagattaattctaagattttattgcagaaaatctctttctaccttgaaaacaggagg
taattttatgaacttgatttttaatcttagctggagtaaaattgtggtagaacatacactagctttgtaatcttgtgcatgttactgtataacgatcagt
ttatttgttcataaaatagggatagatagaatatctactttgtgggatagttgtcaggaagtgaactccctggcacatgccttacacatagtaagcactc
aggaaatcctaactatcttttatattatcattatgattatgaagtgctcttgtcctttagaatatcctggacaagatggttaatgggctgtacatctatt
attcaggta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
623 chr10 4997445 4997755 RIP_Alu_chr10_004_02 0 - pAlu10-5107582 NA NA SINE Alu Y ccagcttcaattgccaatttggtggcctctaaagctttacttttaggaacctgggggagtaaccataggtagtattttctgactaatgtgcctgagagtt
agttcaggcacaagtagcgacgttcacaaaaatcagcttttcctcctttcttggatgagttctgtatgtagaatcatgagcccatcccagtctccctggg
tctttcccagttagtaataaaggttgggcacagcaggaacttctgcagtcccagaaaaatcactgcttgaccactagtttggaagtgtccccaaaacaat
ttcaggttcagtcattttttggaaaaattaacaggatgcaacctatagttatagatataatcttaattatttttagtatggtaAAATTAACACAAGGAAT
GGCCAGGCGTGGCGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGCTGGGCGGATCATGAGATCAGGAGATCAAGGCCATCCTGGTTAACAACT
CCATCTCTACTAAAAATAGAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGGGGCAGGAGAATGACGTGAACCCA
GGAGGCGGAGCTTGCAGTGAGCTGAGGTCGCACCACTGCACTCCAGCCTGGACGACAAAGCGAGACTCCATCTCAGAAAAACAAAACAAAAACCAAACAA
ACAAAAAAAGAAATTAACACtagccacatggaaggaaatatgaaggaatacagtgtaagctcctgtgattcctctcccaccatattgcacagaatgcact
gactttacccggaatcatattttgtcaatgtatgtgaactgttgtctacaagagatgctctctacatactccattactaagattttgtctgggactggtt
acattgactcactctgcttcgcaggcacaaaacttccaaaagtctccaaaaggaaagcaggtgcacagaaactccgcagtttgcacaagcagttacttac
agccaccattcttatcagttaggaaatagtgagaaatccaccttatcagataccagcaggtttatatgggaaacaggcctgtctatggatagcagtctat
tat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
657 chr10 9559834 9560127 RIP_Alu_chr10_009_01 0 - pAlu10-9669962 NA NA SINE Alu Ya5 cctttttggagttttcctcagtaaccctttgtgagtggtcatctctttcctgccagggtcctcagggaggcagcatgccagttggcttgattcatcaaat
tccaaaccccttggggttgggtgaatgatggtcccctaaagatgtccaaatcctaatccctgaacatgtgaatattgtaacttatactttgcaaatgtga
ctaaggttcttgaaatgggaagataatcttatattatctgagtgggcctgctgtaatcacaagggtcttcataagagtgtggcaggaaggtcaacgtcaa
agagagagagatgtaaggacttaagcagaggtaggagaaaagagaagatgctgctgctcgctttaaagatggaggacgaggactcctAAGAAATGCAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAT
GCAGTCagcctctagaagcttgagaatcaaggacccccggaagtaatgcagacctaccaacatccgggttttagacttatgaccttcagatatgtgagaa
aatacattatttttgttttaaaccactaaatttgcagtaatgtgttacaggaacagtaggaaactaataagtgtgcttttaaagacttcccttttcaaga
caattattctttttatcacatctctattctgctaaaaataatctgttttaatataattttttgtacctctcatttgaagtctatcctaaaaatgtagctt
ttaaacttgcattaaaacattcagtcatatttagagaaagatagagatggaaatgatagttacatcaaagaagttaatgccacagaaattcca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
667 chr10 10748549 10748858 RIP_Alu_chr10_010_01 0 + Yc1NBC60 GAAACCGCCAAGATTCTCACC TCTCCATCATGATTCCCAACTGA SINE Alu Yc1 ataattttaacctctcccttttccagatgaaaagtctcagtaaaaaaacagctactgaatgtgcagcatttgtcagatgccactagtcaactcacttcag
gtcggggtgctgtgttggctccgtgtctctcaagaggaaataagtcagtgggggcaggttgtgggttggtgcccagcatagcaccaggtgaccacacacg
ctcctccacctccaacttattaatgatctcaagcacttcacaccatttctgcccttaagcttagttgaagaatcaaagatgagtctcaagttggtagtgg
aagtagcaaacaaggaaggagagaaggccctgaaatcacctatctcagaaaccgccaagattctcacctaaggaggatgattatgtgtttgtAAGAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAAAAAAAAAAGAAAGAagatggtttaacctttagcctattttcagtggttggcttggttttgcacacacattcacacacacatacacatacgttcatgc
acacaccacagcatacatttataagccaaaggccctctaaaataagtcagttgggaatcatgatggagatgtgaataatagaagaaaaaatgattatgca
tcccgggcaatccaaaaggttcctgttcatttggaaatattttaagatgtcagggctgaaaggcaccatgctctttgaataaatgaattggtctcctggc
gttgtgtctatggaagctatagttattactactcagacagctgactttttgttttaattatgcaacagaaactggaaaaatgtttggggtcaactttcta
ttttagtga UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 522 205 NA intergenic
686 chr10 13298028 13298326 RIP_Alu_chr10_013_01 0 - Yb8AC1519 GCCACGATAATATGGAAAGTGC AGCAGTTGAGGGATTTGTCC SINE Alu Yb8 gcaaacaaaggtgaacatttttctagataatgtctcattagtttagacactctaataatacttttgagtctcaaataacacactagtgagtctggatcat
ttagtgtgtaaacccccaagttaaagacttgcagaattaaaaatgatgatcccattcctccgaggcaccgaggtctggagtactaacttacgattttatt
aggtcatgttctaaattgtaatttttcatgcactcagtacggaacagaagggcactgaggggcaagatactctatatttatgttttgtgttatattcctc
tgtcctttaaacattttaaaccatgtgtattcaaactatttttaattacaaaagccacgataatatggaaagtgccaaaactttttAAAAAGTGTTAGTA
TAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCACAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAGTGTTAGTAcattgtaagatcacagagtatatcaaaaccatcagttgtagactagaatattcatatttaacaaatttgcttatggacaaatccctca
actgctagagacagaacttttaaactaaagtgatttacacaattagaatggtatcctgaaatcattactgaaaaaatagtgtagcatgtcctttagaaag
tcactacagatgtggccggggtgtggtggctcacacctgtaatcccaacactctgggggccgaggcaggtggatcacctgaggtcgggagttccagacca
gtctgactaacacggtgaaacacagtctctactaaaaacacaaaaattagctgggagtgtcagtgggtgtctgtaatcccagctactcgggaggctga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 453 141 NA intergenic
707 chr10 16040972 16040973 RIP_Alu_chr10_016_01 0 + Ya5-MLS28 AACTCATAGAATCGGATGTAGCACTAC CTGGATTTAATGTGAGTAGACTTAGAAC SINE Alu Ya5 gtaattaaaacctcagagttagagtgagtatgaggaattgttttgcaaatgaaggaaataatggagaatttagatttttttcccagtatataaagacatc
taaatcctgttgtatgaaggataaactcatagaatcggatgtagcactacacttttgtttctgggaccacctaaaactaacccattctaaccaggtggct
gcctaatctccatctgtatccttagagatctcatgatttctttagatgatgtgttaaaaaacatgctaggcttttggcttcaccattatgacctgttcct
tatataagcaagaattattaaacgtgtggttagcaaatgcttcacaaaatcaagttgcttgcttctttgtatcatgcttttctagaaAAGTGAAACTTTG
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCATCCTGGGCGACAGAGCGAGACTCCGCCTCAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAGAAGTGAAACTTTGgaggaaatacccaagaaacaagaatattgcctcaatattgtttttaaaaagtcagaaagcgtaccgtcgat
aggaataatactaggctttgattaaatagtcaactccttaaggatgttctaagtctactcacattaaatccagtcatttatacttttttccctctacatc
tatacaatttgacagtgatatttgatgtacctaataagcttctgcaagaccttaaatcaccatatggaactctactagccaatggttagtatgggcctgc
taaccaatacactgaccacactaaaacaaaagccgtcttatgttggaaacattttgaaaggtaaagactgaaataaaaaggtctttcttgtaattgttct
aaaaatgcaactaaca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
738 chr10 20172022 20172023 RIP_Alu_chr10_020_02 0 + 16184 NA NA SINE Alu Ya5 ggtgaatttgaaggcagctaaacacattgcaaatttagaagaaggatgtaggtcttaacttgtggatagacttttcctcgtatatgggttaatgaatatc
cttctctctcttgtgaattcttattaatataggccataaatggagctttcttttttgctctataaagccttcttatcttttgacgtcatgtttatattat
ctgatatgatgtaaacaaatctgacaggagtaactaaaaaaagcagtgcacagctaaatgtattcagtgtttattggctgatatgttttccccacatagc
ttcaatttaaaaatatatttttatcctttattacatatcctccttcttagtaatgcttttaacttatgtcatatttttttttctataAAAATTTACCGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATTTACCGGAacaacgatctgccactgtatctacagcattttggtttcccaccaaggtagttttaaatcacatttagctca
attgacttatttatgaatactgtttgaaaacagtgtttatgtggtaaacatgcttttcattgctgcattttaaaagataaatgcaatggaatacttattt
ttttgtttcacaatttaaagctaaggtattaatttgataattattcaatgtcaatttatccaatatcgatttattctcatgttctttatttgtaaagttt
ttctgggtttccaaagagtctacccctgttatcgtaggattcctccataaggacaccatccacgggtaccactgagagcttctggctgcattaagatatt
ttctagtgaagaagaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
742 chr10 20707265 20707571 RIP_Alu_chr10_020_01 0 + Ya5ac1952 AGCCCCAGATAAACCCACTT CAAATTTCACATACACAATGCAA SINE Alu Ya5 atagatatacaattttttgtttcaatatgaaatcatagtgtaatcttttaaaagacattttaagtggcaaccatatatgcatctatgaccaactttaccc
aagtacaggaaatggcatatggtgacgctatctggccagcagcttttgtgaagcactctagattgtgtaaagtactacaacctttgagaagttaacatgc
aaaaaatacgtgcatctcgtgcatctcagtagtgtggccaagtgtcgtcgtttacccaggattgatgaggttctcagaacacgggacttttagcacaact
aggaagccccagataaacccacttgagttggtctctgtaatcagaatcaattcagtatgattggtcaaaggtacaaacttttagttAAAAGATTAGTAAG
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGATTAGTAAGttctggggatgtaatgtatatcatgacaactccagttagtaacattgcattgtgtatttgaaatttgtaacaagagtgta
tatatatatatttttttgtttgtttgtttgtttgagacggagtctcaccctgtctcccaggctgaagtgcaatggcgccatatcgactcactgcaacctc
cacctcctgggttgaagtgattctcctgcctcggcctcccgagtagctgggattacaggcgcccaccatcatgcccggctaatttctgtatttttagtag
agacagggtttcgccatgttggccaggctggtcttgaactcctgacctcaagtcatccgcctgccttggcctcccaaagtgttgggattacaagtgtgag
ctacca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 483 163 NA intergenic
776 chr10 25075197 25075288 RIP_Alu_chr10_025_01 0 + 12468 NA NA SINE Alu Y gattgaaaccattctggctaacacggcgaaactttgtctctactaaaaatacaaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctact
caggaggctgaggcaggagaatgacgtgaaggcgggaggcggagcttgcagtgagccgagatcgtgccgctgcagtccatcgtgggcgacagagcaagac
tccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaactgaaacaggggctgagcatggtcgctcatgcctgtaatcccagcactttgggaggctaaggtgg
gtgattgcctgagtccaggggttcaagaccagcctgagcaacatagcaaggcatccgtctctaaaaagaaaaaaaaaaaaaaactgaagcagctAAAAAA
AGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAtgt
atgtgggaagtggctggtacaggagaaagttgggagcattaagcagatgaggtgagggggagaatggcctctataacacgctgttaccatcacttagtag
gtatgggattttgaggtaaccccacaaaggctaattcctcctaaaatccgtgtctgcagccttgctaacagcatgtgacaaacagcactgagcatagcca
gctgtagatgatacatctgagagtcttttgcaaacagatattctttttcagtataaatataattcttgattatagcaatgtataaaaatatacgatcaca
atctgtaaacaaaacaaagcaacaacaacaaaaattcacatgcatttggatggttactagcaaaaaaaacaaaaaacccagaaaataacac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
776 chr10 25138095 25138425 RIP_Alu_chr10_025_02 0 - 238040 NA NA SINE Alu Ya5 ataaaaataaaaaaaattttaaagccattgcacagttttctctgctgctggaataaatggatcttctgctagctctaattgccctagtaaaagaatatta
tctttgaccactgatcctaagaacccaaattccctgcaattcctttgctaaaggaaatccctgtcttctctccatttctggcccctgaatgctatttttc
ttacaaccaacaaagaagagtataaaggtgtttatggaaagagcatccctgtgagcccccttttcctgggacagttattcttttcccaaacagagaaggg
ttcttttaataatcaagttaccgatttattctaaactctcccctcccaactgatatttgaaggttggaatggcattaaaaataacatcacatAGAAAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGCTaattatgttccacttcccacccgtccttcttgccaagtaatcttgggttttgccaccttgtt
tttttattttttgaacattaaaaaacagaagaagacgagggaggcagcagagaatgggaacagattaggctttaaaatagaactgtcaagatggttcccc
gcaggctctgttctgatctagcaattggtaacttcagatccacttgctttcacaagcgtctggatagcagtagattgagcagcaattaagggatagagca
ttaagccgaatgaacttacttttctagcattaactatggcttttcatggtttccagtgaaaaataaatttaaacaaacttataaaatatttacgtgaaca
aacaacatgtgaaaaaacaaatttatagaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
789 chr10 26807963 26808253 RIP_Alu_chr10_026_01 0 + Ya5ac1939|pAlu10-26918096 GCCAAAAAGGAAATCACAATG GTCTCCTATCCCAGCCATGA SINE Alu Ya5 aggaaaagaaagaggcacttgggctggagatgtgctttgggggttggcagcatatgtatggtatttaaagccctaagagcaccaagggagtgagtgtaga
ccaaggctgaagagaaatgaggtcaggaaggatgaggaggaacccacagagaaggctggaaggagaagctggtaaggtagatagggatggagccagaatc
tctggggcctgaatcttacacaattttgggaggctcccttttaaaaagaagggatttttttctacttggggtgggagatgaagtctccctttaaaaaaat
acaaaattgtcaatgaaaaattaaggacaagagggaatatttatttagagccaaaaaggaaatcacaatgaatgaccaatttttAAAAATTGACATATAT
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG
AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGAC
ATATATaacaaacatgtacatgtacccctgaacctaaaataattttttaaataaaataaagaaaaatatttaaaatcatggctgggataggagacagcaa
taatttataaagtgtataatttataaagtgtatttgttattaatcactagagatcactgaacccaaaaggacttaactgtgatactttactgtgaaaaaa
tagttttcactgcctaaaatgaaactctttattttacagcattattagaatatgcaaacatttgaaaaaaaacaataaaaataaaaattgacacgtaagt
gtatatatctaaaaagcaacattgtaatctttatgatgattaaataacttgctgatgtatttttgctacgcttttggctgcatattcttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 446 140 NA intron
807 chr10 29142534 29142535 RIP_Alu_chr10_029_01 0 + 16220 NA NA SINE Alu Ya5 ggcccacgcttctcattacaaaaatatgttctgacactctgagtacttgtggctgggctggagaggcattgggccctgggatctcttgccagggagacaa
cccccctgcaactttgtgctaggtaatcttctgtcccctcttgtgtctcttctttccagtctggaccttcaaattggagggggtgaggagaaccctaaag
cccaggcatcgatggggaattctggagacaaaagctaattaaagttcatttcaaacctgtggggagaaaaattctagacataaacctaatgtaaagaaac
acataaaattttattggaagacaaaagaaaagtggaatgagcacacatatcatgtttttggatggtaagaataaaaattgtgaaagAATAGATGATTTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATAGATGATTTAGattcaatgcaacctcatgaaaaattacaaagggattgttttagtccattttatgttgctataacaacaccacagactgggtaatt
tataataagcagaaatttgtttggctcatagttctggaggctgggaagtccaagagcatggtgccagcatttggtgagagccttggtgctgcatcatccc
atggcaggagttgataggacaagagagagggctagagtaagacagggaaggtgatccaaatgtattcttttatcaggaatccactcttgagataactaac
ccactcctgcaataacttcattaattcatttatgtagtgccctcctgacctaatcacctcttaaaggtctcatctctcaacattgttgcactgggcttta
a Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
807 chr10 29145304 29145305 RIP_Alu_chr10_029_02 0 + pAlu10-29255537 NA NA SINE Alu Yc1 gcggggcccgccaagcccacgctcacccggaactccagctggctcgcaagcgcggcgcgcagccccggttcctgctcgcgcctctccctccacacctccc
ttgcaagctgagggagccggctctggccttggccagcccagaaaggggctcccatagtgcagcgctgggctgaagggctcctcaagtgccaccaaagtgg
gagcccaggcagaggaggcgccgagagctgtgaggactgccagcacgctgtcacctcgcaaaagtaaggaagatcgattatttttcacccattagctggg
caattcaaaaaaattctgttgcattccattttgggggagtatgcattggtaatagccttttgaagattgatttggcagtgtttattaaAAGTAAAAATAC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGTAAAAATACctattttctttgcatcatcacttctgtatttctgtccaagagaattctttgcacatgtacaaagttatacaggttgaaagaggca
tgggtaaagattttcaatgcagcattgttcataattgcaaaaaattttcaatttaaatgtccatcattatggaaacaaattgtgatatttccaatactac
atagcattatgcagcagtaagagagaataaggtaagtggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaagtgggcagatta
cttgaggtcaagagtttgagaacagcctggtcaacatggtgaaaccccatctctacaaaaacacaaaaaattagctggacatggtggtgtgtgcctgtaa
tcc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
834 chr10 32745743 32746070 RIP_Alu_chr10_032_01 0 + pAlu10-32855876|Yc1RG344 GGGACTAAATGCCCACTTACTTT CTGCAGAAGCATTGACTAAACCT SINE Alu Yc1 ctccataaatgctagattaactttgtttttaattttcttctcaggattcagtatagttagaaagaaaagtgaaaataatgtagaaagggtaagaagagta
tttcttaccttaatttgccaaactttcattataataaacctcttattttccagtattagacaattattgccctctgctacttatcaactgtgaactctta
agcaacggatttgtcctttttatacctaaagtttttgattttcaaaatcaggattagaatatctactttcaggtttatgatgagaatttactacgataat
ctatgtaaaaggacctcacacagtgatgagcctatattgggactaaatgcccacttactttattttttcttccaactacgtacttaaaaATATTCTATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAATATATATATATATATATATATTCTATTCaacatatttttatttttcaggtttagtcaatgcttctgcagatgcttttcggaaagtctggt
tactggtgaacttacttttttcattaccttagatattttttaaaattacggtaaaatatgcaaacatgaaatttactatcttaactatttgtaagtgtac
agttcaatattattaagtatattcacatcgttgtgcaaccaatttgcagaactttttcatcttgcaaaatcgaggctctatacccattaaataagtcccc
attcctccctaccctcagctttattttctctttctatgaaattgattactctagatccttatgtaagcagaatcatatagtatttgtctttttgtgactg
gcttatttcacttggtgtaatgtcctc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening|Genome comparison NA 0 0 0 NA intergenic
840 chr10 33532660 33532935 RIP_Alu_chr10_033_01 0 - Yb8NBC157|265 TATGGTTCTCAGCCATCACG ATTCTTCCCCAAAGGGAGTC SINE Alu Yb8 aaagtctggattgcaggcctgagtggcatgtatgttatttgcacttggtgacttcttagttattactggtgtgtatctttgggccgttgaagaagttgaa
acttggctctgtttctccatgtgccgtaactctgcttggtgtttcagcaccattcagtgtcaaatttttactaagaaagcagcagttactgacacattcc
tactggcgagaagagaacaggccccagccaccaacatcttgtatggttctcagccatcacgagaactatccattatctcaagtcttgtaaagtgaaacgt
aatgccaaaaactgtaaaatattaaacagattgcaaaaatgagtaacaggctaaaaaaaatatctgaacgaaatttaaaggacttcAAAAGCAGTCTTTG
TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGTCTTTGattaatattgg
atacctttcaactgcaaattcaaagatatgggaatacctgtgaacagtggaatgcagtcctatgagagttcatgtaaaatgaccccgggacatctgagac
aacttctctcacacacctgccctggagagagggctcacagtttgagaagctacttacagagaaatggaatcactgtttttttagtttttttgtttttttt
taaaaaaacactattgcactaaatgtgaacgttgactccctttggggaagaattataatataaacttagcaaacatagtcaatactaagaatataaaaga
atttatgacaagtgagtgctctaacaccttgaaaatgaaagggaaaacgtttcaagcaaaatctctgtcttcaaa UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 60 712 423 NA intron
849 chr10 34724489 34724799 RIP_Alu_chr10_034_01 0 + 12346 NA NA SINE Alu Yb8 tcccatgtagctgggattacaggcacctgccacaatgcccagctaatttttgtatttttcatagagacagggtttcatcatgttggccaggctggtcttg
aactcttgacctgaagtgctccacctgcctagacctcccaaagtgctaggattacaggcgtgagccactgcgcccagccgatggttctcatttaaatcag
gaggaaatgaaatgatatggatgaaataaaaattgattccaaggtaatgaaacgttttaggtaaatgtttttctactaagaaaataatttaaaaaaagaa
atcaccaaagtaatgaaaccgtgaacgaatatagatgaggatcagttaactttatttttgaataacatatacaaggaaataactcAAGAAAAACATCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAAAAACATCATCatggggaagataatattgtctctctacctatttgtctctatttctacatatcagcaggtagtcaactaagacagg
ggttggaggacgagctaattgtcattaatgcccctgattgaaaaacattcaacctagtctaaaaaatagctttgaaagtaagcagtgcaagattcttatt
ttaaaaaacttaagccagccatggtggctcacacctgtaatcccagcactttgggaggctgaggccggcggatcacttgagatcaagtgttccagatcaa
cctggccaacgtggtgaaaccctgtctctgctaaaaattcaaaaactagccaggcatggtagcatatgcctgtagtcccagcttctaggaaggctgatgc
aggagaattg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
856 chr10 35633228 35633545 RIP_Alu_chr10_035_01 0 - Ya5_541|pAlu10-35743364 GGATTGGGAAAGGTGTTGAA TGGCTGAGAAAACCTGCAAT SINE Alu Ya5 catgacacttgtatattaggctcctaaatactgtgcaacacggcaacagtgatgagaatcactactcttagaccacacttgaattagtgtctcttccatc
cacccacgttttttggctcttcttcctctgatctcccctgccttgaggctcagcactccccctaacaccctagtggttctcaacctgggcaattatgccc
ccaggagacatttttggttgttgcaactaggggatgccactggcatgtagtgggtagaggctagggattctgctaaacatcctacaaggcacaggacagc
cccccaaaacaaaaatgatctagctccacatgccaatagtactgtggctgagaaaacctgcaatatgctaaccaaaccacttttaatTAAAAGGAGAAAA
AAGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATAAAAAA
TAAAAAAAAAAAAAAAATAAAAGGAGAAAAaagccttttcaagatcttacaacggctcttattagattataaattgtaacctcctcagccttactttcaa
cacctttcccaatccatttctaacctacctgtcacctgaactgagcaaacctatgctgagctcccccatgtgcaggaggtgcaaagctactgaaagacga
agaggggttggtgctttccagaagcccattcacgggtgcaggagacggagaaactggagcatgtggctagcacccagcaggtatcaggaatggtctttcc
tttcttcctaattagctctaattccaggctgactgtgatgggtggataaagagtggtggatcttagtgttttccccacatcgtaatctgtgctcttgttt
gtcttttaatctattag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 471 141 NA intron
936 chr10 46117912 46118212 RIP_Alu_chr10_046_03 0 - pAlu10-48826771|pAlu10-46573022 NA NA SINE Alu Y ttgagaccaacctaggcaacacagtgaaaccctgtctctacaaaaaaaaaaaaaaaaaaatacaaaaattatataggtggacatggtggtgctcacctgt
agtcccagctactcgggaggctgaggtcgaaggatttcttgagcccaggaggcagaggctgcagtgagtcgagataatgccactgcaatccagcctcagt
aacagagagaagccatttctgaaaaaaaaagaaaaaggacttatcattatctaattcaatatattctataataatcaaaaaataccattgaatgaatggg
gaagaaaattagatcaactgctgtgaagacacttgtttacttctgatcaagaaatagcagcagattatacctctgtggtattagtaaaacaTATCTTTGC
GCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATTGAAACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCAGGCATGGCGGCGTGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AGCCCAGGAGGGGGAGCTTGCAGTGAGCAGAGATTGCACCACTGCGCTCCAGCCTGGGTGACATCTCAAAAAAAAAAAAAATTAAATTAAAAAAAATATG
TATCTTTGCtttggttccaaatatattttttaaatgtttgatacatggggacacatcacagtgtatattatcaaattactttgagttataaatagaagag
gaaaatcaaaataggaaaattacaatagccttaaatctctcagttgatgttaaaagtactaaattctggcagctagggtaaaattaatataataaaagaa
tagatacagcactcactttttctatacccccaagtattttaattatttctatatttggaaatgaattcataatctattagtcacattatttgaaatttca
aattataattttatttgtttcagataaaagcctcatcctttaaaaacatacctttgggtgaataaacaaagcaaactttctatgactttcatataaacta
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
937 chr10 46253171 46253491 RIP_Alu_chr10_046_05 0 + pAlu10-48965220 NA NA SINE Alu Y ttacttttctagaatctcattcttaattatagttttatatttttccttcaacaaagtcttaaaacccatgcagctggtgtctattatttacattctgtga
tgtattttatttgactttgtgtttttagtcttttcacagaaatccttttattgtgatcttcttgtccaaaagcacttatttcatatctcttttccatacc
tatcttcattagcaggttgcatttcagtttcttcagtccttttttagataatatattttactacatctgtcttcacaacactgtatacgctctgatgatc
aggtctcccttcttttttttttttaaattctcgtcctctttgggacccgtgacaaagtaaaaggcagatttttttctcacctgacttaaAAGTAAAAAGG
TGGCCGGGCGCAGTGGCTGATGCCTGTGATTCCAGCACTTTGGGAGGCTGAGAAGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCTGGCTAACATG
GTGAAACCCGTTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGTGAGACTCCATCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTAAAAAGGcttcatatgtttctcctctgattcttcttaggcccagcatttccaaaaacaaaatagtaca
caaaacattagttgtaatgatacttcaaaaggttcaaatactagtttttggctgctttctgactatatttttcttctaaagaaattttgttatgaagtat
tgaactattcagtatactttaatattttccaaataaagtttccaaactgatatttaacaatattctcttatattcaaacatattctgaactattttctgc
tgtgtctctagatcaatatttataaatctagattgttcatgtattttttttcctttgctaactttcaagatcatatcaaaaagcaccactgttgattcca
ttttttatgtttcattatttgaaactat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
937 chr10 46254446 46254757 RIP_Alu_chr10_046_04 0 - pAlu10-46709553 NA NA SINE Alu Y aaaactcatagaaacagacagttaattggtagtcatcagaagctagggcatggggaaattgcagagatgtcggtcaaaagacacacaattccagttagcc
aggaggagtaagttcaaaaaattgattgcacatcatggtggctacggtgaataacaatacatttatatttgaaaattgccaatagagtagattttaagta
ttctcaccacacacacaaaatatagtaagtaggtgaagatgttgtagaggcccaaattcgggctcatgtacctgatgctcaattgaaaccaaacactgac
acaccaatgcttggggatagataaaagtttattccatttggccaaagtgagaacggggcaagatctctcagacatgtcttaacaataagacgaaGCAGAG
GGGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGCGGATTACGAGGTCAGGAGATGGAGACCATCCCGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTGCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAATGCAGAGaggatatttttgcagctagacagtaagagagggggagttttagggaaccaaggggaaagtctgtgtttctttaatctctgata
atatcctgagcaaccagacttctgggcctcagcagttagttgcaacatccttataggcattcattccttctgcaaatgttttttgttaccttaaagttat
cttctcctggttgacaaagaaatagtaaatcagcagtttgcaattgtattgtgagaacaagggatgttggcttttatgcaagcaagcaagggcctaattc
gaatttttgttatctcaatcactaaaaatgctgaggtattgacacctcaaggggtccgattacaaggtaatgcatataatgcgtatgtttagcttgattt
agccattccac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
938 chr10 46322199 46322200 RIP_Alu_chr10_046_02 0 + pAlu10-49034251 NA NA SINE Alu Yb7 aaaaaaatgtttttttttctttaatttgtttcattaattgatttagtatgagcttatgttgcagagctgaaatctagttttggagtgttaacaaaattaa
gtttcccagactgtaaaagagggctggatcctggaccatggtcattttaccgaggcaattaatgtcagcagggacctctcaggggccttttcctttttcc
taggtaggtgtaaactcaactctgcaatctctgtattttttcctaacatctctatagttgttaacgactaggtaacattctctctggtggctgtaatgca
atttacttaaccattttcctattataagacatttagatgatttctatgaacatttttttaaaaaatcagattttttttgtctttttAAGAAAAAGAGGAT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAAGAGGATctagttcaccgatttctgaataagtttcttttgtgtggaacagatggaaatgttgggaaaaaaaagaaatctac
acttttctgttgtcctaatgaggcagtgaacttagttggatagcttgggtagtttatactacctattgatatatacccccaaacagaaatcttccttttt
ttttttttttttttgagatggagtcttgctctgttgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctctgcctcctgggttcaagtg
attctcctgcctcagcctcccaagtagctgggactacaggagcccgccaccacgcctgactaatttttgtatttttagtagaggcagggtttcaccatat
tggccgggctgg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
939 chr10 46508391 46508709 RIP_Alu_chr10_046_01 0 + 239115|pAlu10-46955146|Ya5ac1982 GTGTGTGGAGGTGCTTCAGA GAGTCCTGGAATTCCTGCTG SINE Alu Ya5 ggggtggcaccccagcattcctggctttctggggtccagataggctggcaagagctgtttttgcatccatttgcatcgtgaagactggcattttgatact
tcagctgtttgttcctgggagaattctgagcacagattccagaggtcacagtaagccttgcagcttgagctgaaagatgccagagccggagatgtctgct
ggcagcaggcagggttcattctggtgacacagcaacagatgcctggcctgggaacccagggatttcacctccaccagtgagaccacggggccactgtggg
gtgagggaaggagcgcttggagtcagagctctagaccttggtcaactcttcacctctgtgagagatggtgtgtggaggtgcttcagaagtAAAGAATTCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAATTCTgtggatgcaaagcagtgggattactgttagatcattagcgcatccagctgaagacaatagatgcagtagtct
tggcttacagccctctgcagcaggaattccaggactcacttcctactccatcccttttctctatcactgtgtcttccaccttacatggaaatcagcctgc
aagttcctctcctcgatgagatggcaagcgccttgcaggtgaaatccataccatcatggggcttgtgtcttacatgccatggacaggccctggcacaagg
agagagctccagggaagttttccatggtgggttgatggtaaaggtgccactcactgctgaatgtttggtgctggacaggagtccagcatgggaagggggc
cagggctcaggctcctgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Trace comparison|Candidate screening NA 60 470 148 NA intergenic
951 chr10 48039957 48039958 RIP_Alu_chr10_048_01 0 - pAlu10-48355753 NA NA SINE Alu Ya5 gggatgcgggccggctgcagtgagcggccaccttgccaagacacagagagatggagcgtgaagccaacacagtgtaaggcaggactgagagaggagaaag
catggctagaactttgcctgtactgtagctcaagccacgctaaagccaaaccgttgccaaccaagaaggtttcattagtcaggtgcaatccactttgctt
aggcctgtttggattctgcttttctgcaacctgtgacaaaaggaatccaaatgacaacattttaaaaattttaattaaaaaatttttgtcaaagagaagc
aagcctgtatatatcaaaccatgtatacctcaagtggcttcgaaagtaaacctaaggcagagactgaagacactttggtgtagattttcttaAATTTTAT
CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC
TAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG
CTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAATTTTATgccagtctttgctttatttaggtatagacacataagactaccataattcagatcgttagtctttgaataatcatgtggactgacttcc
ctgggaagtcggtgaagaattagaaagtacacaatttggaggaagaggggggaaaggagagataaataagaccttctgtggttcaagtgaggcagctcct
tcctgaggccccaacaatgcaaagctggtgatagcagagggaggggtccttctgcaggagggaacatccagggtctgtttcctcctgggaaaatcagagc
aagtttgagacttgttccctaagacccagagttagggggattttctcagatggaccagggtccatttgtatgaaaaggtaaccaggtccctgaaatcacc
acct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA promoter
963 chr10 49587176 49587485 RIP_Alu_chr10_049_02 0 + pAlu10-49809478|239156 NA NA SINE Alu Yb8 ccaacttgcaaacactgctcctgtgtgcacttagagatgagctcttgtaagcttggggacttaaagggtcattttgagaataaaatactctaaaaatatc
aagtataaaccaaataatgcttagaatgaggaatctatccttacagacccatcatagaaggaagttctagatatagaattatgtgcctctacaaatacca
gtgaactatttacatctcttttatgtatgcagccttttaaaagagaagcagcaacaagtgaaaaaaaaacaaacaaacaacaccccccccccccaaacag
gctttagtgtgaaagtttgcatttcaacttgacgtctagctgcctgtatgcctttggcccagtttccttacttacctagagagaatAAGAGCACACATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAGAGCACACATCTgtctgtgtggctgtaggagagtctgtctgagtcttgtgtataagaccccacagtgctgggcacacactagattgtga
acttgtattaatcacatctaaatctgaatcccctttttaaaaaggcttccttattttagtctgtttcagattcttaggggaaccattttcaatagaaact
gggctgagtgagtacagtaccttatccacagccagaatcatcaggaagtgatgtgacaggaatgttcacttctatttgttctgaattcagatctgctttg
ccacggcatggaggcagaagatctttcaaaggctgaagacagaaatgaagacccaggttccaaaaatgaagggcagcttgctgctgtgcagcctgatgtc
ccacatgga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
966 chr10 49948021 49948340 RIP_Alu_chr10_049_01 0 + Ya5ac1960 TGAGATGTGCTGGAGTGTGAG CAAAAAGGTAAAAAGCAACAGG SINE Alu Ya5 gaaaggaccagggtgcaccccttactacacacagccctgtttccaccatgtcaggccccagagcccagccccctccaggaatgagtcctgcctggacaac
cttccaggcctacagttataaggacaggaccacctctatcaccaagtgggaagctgaggagaagcaagtcctccacctcctgcccctttggcacaaaaag
ccacttagaggccacatttctcacatgcaaaggaccagcatgcacagctgtctgtccagggtcccatagtcccacatggcagccatgagctccaggtggc
tatcaagtcccaaaatgtgatgaatccaaaatgagatgtgctggagtgtgagatcacaccagatgataaagccacaccttagcataaaaaaagaaATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATCAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAATATGACATATCtcattcatcatctttatttgttgatactgttggaatgatattccagatacagtgggttaagtaaaaatattaaaat
taattttacctgttgctttttacctttttgaatgtgactactaaaaaaaaaaatggtcagatcacctgtatggctgacatatttctagggggcatcatga
aaagggccttcacttgtctgagcagctgggctgccagtggtgaaggggcaccccaggaaggatgagccctgcacatgagaaggtgcccctgcagctgccc
atgccaggaacggcagtcactcagcacagtgaaagtacctcccacagccccaagaggtaagaggaaccttcattccaatgttagagaagagtcaggagtt
cagaagacccactttataa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 499 182 NA intergenic
997 chr10 54111215 54111520 RIP_Alu_chr10_054_02 0 - 2730 GGGAGGCGGAGCTTGCAGTGAG CAAAGAGTGAACTAGAATCCAGATC SINE Alu Y cacacaaaaagtaacagaaacaagataaagtcctgaggaggatccaggtgtaggatcccatctttgctgacactaactttgctttcccatgttcaagttc
tataattcaataaatttttgagtaatccagttagatctggatttttggtaaatgtatcaaaaatgtttactattacaatataataatgtatatttagaag
ataatgaggttgaaagattaactattttcctcaaggacatacatgtagtaagtggcaaagagtgaactagaatccagatctttctgactgtgttgtcttt
gatcttaacaaataactgtattgtgaaagctcaaggacagcactgaagttttataaatgggagagacatttcagtgggatgggagtttAAAAGTAGTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGTAGTTGAgtgtgctcttcccctcctcttttgttttgttttgtttgtttctgagacggagtctcgctctgtcgcccaggctggagtgcagt
ggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcgcccgccaccaaa
cctggttaattttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtaattcgcgcgcctcggcctc
ccaaagtgctgggattacaggcgtgagccaacgcgcccggcctgttttcttttatttatttagtttttcagccccctgtcctctcttacctttcagaaca
acttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
1001 chr10 54530826 54531136 RIP_Alu_chr10_054_03 0 - pAlu10-54753125 NA NA SINE Alu Ya5 aagcaatttctatattaaagttatgtaacagaaacatctgacttttacttggccttaatatattgtacattttcaataaaaatgattatttccaacttac
agttatgaatcactacctttaagcaattatcatatcttatgtaccctgggagccacacagtagcataagatgcaagggcatgagatatagctgatagaca
agttacataaacactcagaggcaaatagtcattcaagacaaaatttagactatagacagtaaatgttaaagaaatgaaaagtagatcaacccttcccttt
gatatgatatgattagaaaagtcttctaagaactggtgagattggacttggcccttaaagaagaagacagtgtctgataagcagaaatattGAAAATCGG
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAAATCGGGgtgcctccagattgataacacatagcttgatgatggatgttgtttagatcagggtagatgatactataatagaaaagatg
aaaatttcaataataacacaataatgctttatttgtcactcatagtgagtctgatgcagttcatgctgtctactttcttatagatacgttatctgaagta
tatgactcacaggtatttgggcagaagtgatcacaggacctgacaactgcaaacaaggctgggataaatcagaggtgcacttagaaagctgatggtcaat
cctggctaacatggtgaaacgccgtctctaccaaaagtacaaaaaattagccgggtgaggtggtgggcgcctgtagtcccagctactcaagaggctgagg
caggagaatgg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1002 chr10 54688750 54688976 RIP_Alu_chr10_054_01 0 - Ya5ac1926 TTTTGTGAAGAAGCCCTGGT GCAGAATAAATGCTGCAACG SINE Alu Ya5 caacccattaaatcagccttactaattgcattatgtctggacatatttatatatcacctatcttcactaggcatcgtagagtacaactttatataaagta
cctttctatatactatttaatgctttcaagtcctggattcagaattgtcttataccaaaatcagagccacactttcttatttcacatttgtttctaaaag
ttttccactatgtgttctacttttcatttattcatcttcttgttacctgattatacttttaggtacttccttactttctggcacaataaaaagttccatg
tttatcttgtattttcttctcccttgtccctgaatgagtcattttgtgaagaagccctggtttcttttaacatcgagtgacatttatAAAACAAGATCTG
GACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGG
CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAGATCTGagtgctagttgtaggtcttttcagtggacagatttagtaaatacacatatttgtccatgaa
cacagatatacccttatatctgtctctttgtctatcaaccatctatccatctttctctattcatctatctatcatacaactaggagttcactttgatacc
tctaaatttgattgaacgttgcagcatttattctgccttgttgatttctacatttgtaaggcccttctttgaaagtgagaaacctggcaactaagatccc
actattctcaatacatttatacttactggctcagtaccagtgtatgtacttacacttctagtttgaattgcccaaagttcatatcggacacactgtcccc
caatgatctccacctggtgggtctca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 495 256 NA intergenic
1009 chr10 55628260 55628441 RIP_Alu_chr10_055_01 0 - Ya5ac1925 TCGGGGAAAGAGGAAAAGTT GCAGGAATCCTCTGCTTCAC SINE Alu Ya5 tagatctgatttgaattttatttctcttttcattgaatcactttgttttcatcatgcaaataatacatatttttactggcttcacagctgctggtaaaaa
ctaatgatatatgatctgaatgtaaaatgtaagcttatttcattattatacaattttgcttttttcatcctcctcaccacctatatattgtgtgtgtttg
ggtgtgttcatcggggaaagaggaaaagttgtagaatttatgacttttcatagcatttttatgtcctggatatgacatgctggttattggctcacgcctg
taatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaacggtgaaaccccgtctctactaaaAATA
CAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT
GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAATAattagatattaaaga
aagatggagagatacaagaaagagagaaaaaaatctgttcaaaatgccttgcatgtatgaactgctctgagcctgtaagagtgaagcagaggattcctgc
ttaaatcatttcaaggtcattgggttggaagcccatatggaccaattagttttaaacagtgaaaaaacaatgttttccaggcgtagactctacctcttgc
cctggtcagctgtctccagaaagcctgatgtgtgtcacaggggtaactcctaaaagaacatccatcgctcggcacaaattaatcacaactgctggatgca
gaaagacctcatccatactgatggtattagcagcatgcctggttatgtgagatggatacataatcccagacaggaccaaac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 490 195 NA intron
1013 chr10 56187044 56187346 RIP_Alu_chr10_056_01 0 - 10911 NA NA SINE Alu Yg6 aaataatataaagcaatgaagggtcttacagtgagtttttcaggcatggctgtattcagagacccaataagacctcctgaggaatctgtttcttttgatg
ccttttgcttgcatcccatgatgtttggctttaactctcagtcaatatttgtccatgcagctatatattaaggctgctgacaactcaacctaaattcata
attgcaattactaaggaaaggagcccttctctctctctctgtctctctctcggcataaataaaactttaaggaataatctaattggtcttatttaggtct
cttacttgtcattgttggtgggcatagcactgtgactaccataaagaaggcaaatgaagtagttttctaaaggaaagccaatttttaagAAGGTAGAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGGTAGAATTctgagcaagccaaaaacaggtgatatagacagaaatttctcatttcttagcagtttggcatacacatgtatgtttctaataaggaca
gttacaaattgtccccagctaatagaacacaactatcttaactacaactgaatataccccggctggaagcagaacattcataaagcaaatttttatattt
ctcctttatatctcatgctatcaaaagacatttactatcatgttttttgagacatatggtaatccaattgggagcttgcttcataaagccaagcatcctc
tgtcttcaaatacaataataggaagtccaaatactaatcacgttaagacacagctccctcctacttaggaatttcatttttattgacataaattgcactg
tg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1022 chr10 57372053 57372380 RIP_Alu_chr10_057_01 0 - Ya5ac1972|Ya5-MLS07 TTGAGTGGAAGGCTTTGTCA TGACAGTATGGGCGTAGGGT SINE Alu Ya5 acttacattaacttgttcgagattttaacttaaaaacttttctgaggcttgagtttatgtgaatttagttttactaaactttttggaggaggctatcttc
agaatagcttcttctacctcacatacttcctcttctgtggttttctcctggctctgatgtcctgcctgccccactccctacccacactcttttgatcttt
acctccattctccccattatgctcaatttgtgtaccactctctttgtttttcctccgtgtagtgtggaccttatctcataaaggtctttgagtggaaggc
tttgtcaattttggctttaataaaataaataattcaaaaaataaaaaacaaaaaatcccccacaaagattggccaacctacattaatAACCATGAAATTA
GAATAAGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGG
CTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGA
GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACCATGAAATTAgaataagtcaaggatcagtttgctcagaccctacgcccatactgtcagtcttttctgact
aaggcatttttagataacaaaaatagtaaggacatgtagaacaaatcattttacacattcatgaattatcagtcatttgttaaactaatggacagctact
aaatttgaaaactacaaactatagcagaccactacttttaaattcaaatatttcttgcattaaaaagaaagaaaaatctattgaattagaaaaaaaatgt
tagattgaggttcttcttttgtaattgaataattttaattagataatgtttctaagtaaaaactttaagtgtgtttgctgatttggtattactttaaaag
tacagaaggaaaagtacagaaggaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization|Candidate screening NA 60 500 167 NA intergenic
1024 chr10 57644639 57644640 RIP_Alu_chr10_057_02 0 + 3538|pAlu10-57867033 NA NA SINE Alu Ya5 acccgtgacagtattgtttaaatggtaatgtctgtaaattggttctgagataatttcaagtaagaggtacaatctcagtgatttacaaaacaaaaattta
tctgttcttcatgtgaaatccaaggcaggattcttagttgggtagttttcgtacttgctatcatttagataagcctaagggactttgtttcaatagtctc
aaaatccattcctaagcaaattattctagttccagttggtacaaatttgtcatagccttcatttctttgatggataatctctttcctcccatgtggggac
agtgttactttcatcaggctctgccattacctatcaattataatctagaaccaatgaagggagacaggggcatcttttcaggggaatAAGAATTTTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAACCCCGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAATTTTTTT
Ttaaatgaagcttttgtatagtctccacgccataggaagcagctatattttagcaagggaaagtagggatttttaatctcatagagttcaaatgtattct
ggtgtttaaattattatgcatttatcttcctgtattaaaataagtatttcatgcaccccataaatatatgcacctactatgtacccataaaaattgaaat
tgactaaaaaaaacgaggggctgggtgcagtggctcacacctataattccagcactttgggaggccaataggacaggtcacctgaggtccagagtttgag
accagcctggctaacatagtgaaacaccatctgtaaaaatacaaaaaattagcctggcatggtggaatgcacctgtagtcccagctac Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1032 chr10 58685232 58685565 RIP_Alu_chr10_058_01 0 - pAlu10-58907542 NA NA SINE Alu Yb7 gtacaaccactatgtggagatcccttaaagaactaaaagtagatctagcatttgatccagcaatcacactactgggtatctacccagaggaaaaaagtca
ttacaggaaaaaagttagtggcacactcatatttatagcaactcaattcacaaaaatatggaaccagctcaaatgcccatcaatcaatgagtggataaag
aaaatgtggcatatatatatatatatttacatgccatggaatatacttagccatataaagaaatggaataatggcattcacagcaaactgaatggaattg
gagaccattattctaagtgggaataatgggaaaccaaacatcgtatttctcacttgtaagtgggagctaagttatgaggacacaaaggtatAAGAATGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGATacaatggactttgaggacttgggggaaagggtgagggggattgtgggatgaaagactg
cacattgggtatagtgtacagtgcttgggagatgggtgcaccaaaatctcggaaatcaccactaaagaacttattcatgtaaccatataccgcctgttcc
ccaaaaacctattgaaattaaaaaaaggatacatgcgactaccatataaccccccaaaacatcagtttcacatgaaataagtacaaacaggaattcagta
atacaccaatcatcaaaacaaaacaaaacgaaacaaaaaacaaagggaattaatgttggagtctttaaaatcgcatttttacacattttttaatttcata
ttttcaaaagaagacctatatgaccataaactg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1047 chr10 60654927 60654928 RIP_Alu_chr10_060_01 0 + Ya5ACA1250|pAlu10-60877322 GACCTGGGCCAAAATGAGTA TTTCTGAGGAGGAGGAGGAA SINE Alu Ya5 ggttttctttttgctcttcacaaaatcaaaacaattctcttatttttgttgaaattttggtagtctgttgaatgaaaagattgagaaatattgactagac
ctctaaagccatactcagaaagaggagtatataaatctataacataaaaatagtaactctgctatttactcttatctactaatattataataaactgcat
aagaataatctggtgaatgctgccagaaatgtcaagttaaaaaaccaaaaaggatgaaaagtttaaaagtctgataaaaaacttactgttcttaatatat
attaaagaatttccaagtaagatggtacttttgggcatgagcatcaaactatcccctccataagacctgggccaaaatgagtaaGAAATGAAAATAGAGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGGAATTGAAAATAGAGGaaaactcttcttaacaataaaacttatgtaaggattccatcaacattatactccctgagtaatatgtgtc
atataatttatccatggaatcccattgtaaaagtttgtattcctcctcctcctcagaaaatcacacagtattgcaggaaaaatagtaaagaagctcttgg
aagatctgtgctgtcaccctgtgattggatagagtgaaggatggacagctagcaacttcacttggaattttccttgttgccatggattaataattattga
aagcagatatgctaggggccacagaaagtgaagctttatctcctgatggtaatgaggcttacctctaaagtggtaagacacttctccatgggaatcagca
attcaagggaagaa Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 496 170 NA intron
1050 chr10 61035500 61035806 RIP_Alu_chr10_061_01 0 - Yc1RG214 GAGGGAGAGCATTAGGACGATAC TCACTCCCAATCTTTCAACTCTAAG SINE Alu Yc1 tatacatccgatttgttgttactaaatttttcctttaattttacatcaaatgactttgtagcatactttcagttacattctcatatagaatgtcagagat
ttgcgtactgaaagtgtcgaatctttatcctcaatatccaaagtagttttagcaaaagctttacacacacacacacacacacacacatgcacagcagaaa
gaaatatttatgtgaaactaagacaggaacagaaaaccaaacactgcatattgtcactcataagtggaagttgaacaatgagaacacatggacacaggga
ggggaacatcacacactggggtctgttggggggtgtggggcaaggggagggagagcattaggacgatacctaatgcatgtggggcttAAAACTTGGATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACTTGGATGAcaggttgatcggtgcagcaaaccactatggcacatgtatacctatgtaacaaacctgcacgttctgcccatgtatcccagg
gcttaaagtaaaataacaaaatacatatgtatgtgaataaaaacctgctttttcaagtgcttcatctgtactttacttagagttgaaagattgggagtga
atgattgtatatagcagcccttctaaagggagtcacatttttcaccacattttagattgcagaccctcagaattatgaaatttagctttcttttcagagt
agtggatggaaagactataagactgagggcttaatttcaaattccaatgttaacacttattagctgtgtgttcttgaatgaattacatattctccttgcc
actcaa UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 58 554 235 NA intergenic
1068 chr10 63413634 63413800 RIP_Alu_chr10_063_01 0 - Yb8AC1529 GAGCCCAGGGGATGAATAAT CTTCTGCATGAACCCAGTCA SINE Alu Yb8 caggaagagtaacctaagtctccttatgtagatatgcaaggataatgtctatgctttcctcatgcagtcagcgaacctttatttggttcctactcagtgc
caaatgctgtgttcagcagtgggtttacatgggtgaacatgacagcacctgctctcagggagctcccagtcctatcctccattgatggagaaaacagatg
agactccagaccaaggaggagttggtggctcccaaagaaacagtggagcccaggggatgaataattaaaacgtaaagcacatcccagagctcagcacttt
gaaggtgtttatgtcccagctctgaaaaagatgttctgtatttcatctctgagtctgagattttaaaagctatggttggtacaacagtAAGAACAAAAGG
GGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCC
GCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACAAAAGGgggtttaaaaaatataatttgg
attatgactgggttcatgcagaagaaaaatggatacatcaagtacatagtctaccatttaaatatttcctttttcattttttttttttctggcacttggc
ttgccacaacttccatggggcaagtgcttcatacgcaggtcagcagccgagatctctctcaataatgaacgatattactaatataaaatttgcctcaact
gaacttcaaacctgatgtgatttttttttcctcaggtgggatgtggacagagaacatctatataataggtgttatcattcaggaggcctagactgaacca
atactttgcagctaaatgtaatttgcgaagcacaatttaacagctccatttagcgacttttcacaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 379 201 NA intron
1088 chr10 65938805 65939098 RIP_Alu_chr10_065_01 0 - Ya5ac1975 GCTGCTTAGCATTCTTCCCA TGGATAATTTCTGTTCCTACTTTCG SINE Alu Ya5 taaccagttaaaatgaaaccagagaatgctatactaaataatatagctttgataacatttaatataattttttgttagcttatcaatcaaaggttttaga
caaccacattatcaacatattagttgtttctttgaatttgccaggaaacttgaattttccttgaccacatgctgaaataatttctgttcatggaaattag
ttggctttagatgttgtttggttgtaaaattatggtttaccattatttttgtttgtttatagttaattagcattttcattagctgcttagcattcttccc
actacagaagtgtttctgtaaattcttcaaaacaagcaactaagaaagagaagaatgatatttcaacaaatacatataccctttAAAACTGTATAAAACG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACTG
TATAAAACGaaagtaggaacagaaattatccaagttaaaaaacagatgattcatctggacactgagatatatgattacatttattgaaaacacttcaaaa
aaaagtacaacttattgaacaaagttattgcaaggtcacttattactggagataagatcagcgttaaaacctacaataaaatctaaatttaaagacttcc
taaactggggtttctacaattttccttaatgatttttttaaatgtaaaactcttattttctaacttacatttctcttgttgcaattattttggagtcaga
tttagaatatattaaaatatttagtcgtagcaactttttttcagaggtcttatgtttacatctaaactggatctgaagagggttttgtgtgtt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 451 142 NA intergenic
1092 chr10 66521925 66522231 RIP_Alu_chr10_066_01 0 + pAlu10-66744220 NA NA SINE Alu Ya5 atattctagaaaatttctcacttatagtctaataaaatagaagctatttacttttgtatctaagcatgcagagataatcataagcattaaaaagtcagga
aacaacaggtgctggagaggatgtggagaaataagaacacttttacactgttggtgggactgtaaactagttcaaacattgtggaagtcagtgtggagat
tcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccgaaggattataaatcatactgctataaagacacatg
cacatgtatgtttattgtggcactgttcacaatagcaaagacttggaaccaacccaagtgtccaacaatgatagactggattAAGAAAATGTGGCACATA
GGCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGGGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAATGTGGCACATAtacaccatggaatactatgcagccataaaaatgatgagttcatgtcctttgcagggacatggatgaagctggaaac
catcattctcagcaaactatcttaaggacaaaaaaccaaacaccacatgttctcactaataggtgggaattgaacaataagaacacatggacacaggaag
gggaacgtcacacaccagggcctgttgtggggtgggggtaggagggagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcag
cacactaacatggcacatatatacatatgtaacaaacctgcacgttgtgcacatgcaccctaaaacttaaagtataataatagtaaaattaaaaaaaaaa
gaatga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1101 chr10 67754671 67754672 RIP_Alu_chr10_067_01 0 - pAlu10-67977053 NA NA SINE Alu Ya5 acccagcacatttttaatgtttctttttctttcaccctttaatgtacagaaaacagtcaatactaaacaaaaaccgataagcatgtagctgagggactac
agtcattactgattatcgttaagtgtatttgcactcctgcctttcgtgtgcctattcttattttaatgtttgcttttggtcccaaaagactcatggggat
ttctgtggtgatttctaaaattcttcctctgtgtagctccctcctctctgggacagtgcctcacaaatccagctatcccactcttgcaaatctgacctct
ctccacagctgaggaagactgccaggctctgtttgggtttacttctctgtgatttggtccagaaaatatctccaatgttttgttgtAAAATTATGATGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATTATGATGTCtcagaagttgtaaaattatgacagggtatcttcatttggctgtgcttggttctaccttagttccttttgaatc
tccatatccagtttaagcatgatgataaactaattaaagcaaactgaaggccaaccggcatgcatcgggttaaatgatggcttctcagagcatcttgtca
tcatgaaactgaagagttccctgatcccccatgcaggacatggaacaggtttgtggctcacttgttcagttgccatcactgctcaaaccccttgcaggaa
ggggagcatgcagatgggcaggtgcagaggctggggccagtgctttgggctctggccctgtggtagtgtctaggggtgggtgcctgcaaccccagtgtta
caatgctgtctta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1103 chr10 68006772 68006773 RIP_Alu_chr10_068_01 0 - pAlu10-68229160 NA NA SINE Alu Yb7 tgcaaagaatttatgactaagttcccaaaagtaattgcaacaaaaacaaaaattgacaagaaggacctaattaacttaaagagcttttgcacaataaaag
aaactatcaatagaataaacagacaaccttccgaatgggagaaaatattagcaaactgtgcatctgacaaaggcctattatccagaatctgtaaggaact
taaatcagtaagcaaaaatatattaattgcatttaaaagtgggcaaaggacaagaagagacacttctcaaaaaaagacatacatgtggccaacaaatacg
tgaaaaaatgttcattatgactaatcactagagaaattaaatttcaaactatgagatactatctcacatcagtcagaatagctattattaaaAAGTTAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTTTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGTTAAGaaacaacagatgctgtttaagctgcagagaaaagggaacgcttatacactgctggtaggaatataagtta
gttcagccactgtggaaagcagtgtggagatttctcaaagaacttgaaacagaactatcatttggcccaacaattccactattgggtatacacccaaagg
aaaataaatcattctaccaaaaagatgcatgcactcatatgttcatcacaatgctattcacaatagcaaagacatggcatcaaccaagatgcccattgac
agtggaccagataaagaaattgtggtacatatagaccacggaatactgcacagccataaaaaagaatgaaatcatgttctttgcagcaacatgaaatgta
gctggaggtcattatcctaagc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1118 chr10 69942116 69942424 RIP_Alu_chr10_069_01 0 + Ya5ac1980 TACACCCCAAGACACTGGGT TGCAACTATCTTCATATCCAGGAG SINE Alu Ya5 tcaagcaattctcctgcctcagcctccttagtagctgggattacaggtgtgcgccaccaagcctggataatttttgtatttttagtagagacggggcttc
accatattggctaggcttacacacgtttaattttgattctttgtatacatgagcaataaactgtgtgaggaagaattcattgcagaggcagggcacagtg
gctcatgccagtaatcaaagcactttgggaggccaagacaggtgggtcagacagcttgagcccaaaagtttgagaccagccttggcaacatagcaagacc
ttgtctctccaaatatttaagacaccctgtcacaaataaataaataaatacataaatacataaattagtctaatagaaactaaattAAAGATAAATGATA
TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAGATAAATGATAattcactcctggatatgaagatagttgcaatttttctatttcaaagtacagacttcctcactattaaaaatgttggtt
ggggctggaagtggtggctcatgcctataatcccagcactttgggaggctgaggcggatggatcaactgaggtcaggagttcgagaccagcctgaccaac
atagtgaaaccccatctctactaaacatacaaaaaattagctgggcgtggtggcgggtgcccgtaatcccagccactagggaggctgaggcaggagaatt
gcttgaacctgggaggcggagtttgcagcgagttgagattgcaccattgcactccagcctaggccacaagagagagactccgtctgataaacaaaacaaa
acaaaatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 1130 808 NA intron
1124 chr10 70668130 70668437 RIP_Alu_chr10_070_01 0 - Yb8AC1531 TGCAAAGTGGAAATGTCACC GTTTTGTGGACCTGGCAAAC SINE Alu Yb8 ccttaaacttttttgtccacgaaagtaggacaccctgggagaagatttcaggtccagtttgaatgaaagacgtgctgagatgtgcaactgagccgcagaa
acttcatgcctacgtgcatcccccatggccttctcttctctaagctgaatcaccccaatttttttaaaacattgcttctgcagccttttctaataattta
aaggactattactctcatctgagtggtttgaaatatatggtagcagaaggagtaattattgaaaagttagagctcttggattcatgagacattagacaag
tcgtttaacctctctgagcctcagtctactcctctgcaaagtggaaatgtcacctccctacctctctcaaaggaatgctctaatGAAAATACCTGGTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAAAATACCTGGTGTAttatacatgcagaatgcatggtttgccaggtccacaaaacagaactaacatggtgtaaccttgcaggattgtctcag
gaacttcatttcaacttagaaaaatgattcccaaccaggcagagtggcccgtacctgtagtcccagctacttgggagcctgaggcaggtggatcacttga
ggccaggagttccaggcctgcctgggcaacatagcgagacctcgtctcttaataaagagaaagaaagaaaaatggttctcaatttgcattaccaatcatt
gcttacaaatggtgtttcctgagtttcgtgtctgaaatcgcaaataatcatagaatgtttcagactggaagagaacttggaagttaaaagagaatcgccc
aagtcgt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 429 106 NA intron
1128 chr10 71280180 71280181 RIP_Alu_chr10_071_01 0 + Ya5ac1986|pAlu10-71502576 AGCAAAAGGCAGATTCTGGA AGGCAGTTTAACGTGTGGCT SINE Alu Ya5 gaacacatagtgacggtgacagacattagctggtggctgccctggagccataaaactcccactgggtgagctggaggtggagggaggcgctgatcacttt
ggttctcaactacagcaaaggcagacgagatccaaatgtccatggatgagatctaaatgtccacatttgtaaaatgaatttgtgcattaactcattaaat
cactgagtttggaactctaggtaagtttagactgtgcgacacagtacgatacagggcaaaaggcagattctggactccacaagatctgggttcaaatccc
agctctggcatcaagaagcttcaggaagttgggttctttcaaagcctcggccctgtctctagtgggatgaggataacaatcctcttAAGAGACATCAGGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AGACATCAGGAgaggacctggagccacacgttaaactgcctggcatggggtgacactcgagaaagagggtttcttaccccatggcacatgtctaatgcag
gggccttccagcggcctcctgcgtctggaggaagccacctactgagaggtctctgccagcctgctcagggtactgcttttcttagtgctgtcttttacca
atgggcaaagggcgggctgttgtccttgtgatgctgaggggggctgaggcagatcaggttccctgggaagctgactgtcagccagcagactctacataca
caccattgaaaggggaggggaagagagagaagggaaaggcaacagaccgggcaaaggaagatgatgagctgtgccaactctcagtgatggcctcagc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 487 176 NA intron
1136 chr10 72275426 72275427 RIP_Alu_chr10_072_01 0 - pAlu10-72497815 NA NA SINE Alu Yg6 cttcttggttgtcaggttttgcaatgtttactgcgccataaatggctaagaagctatttgcagggtaaagagataaaaatggaatctggcttctaaattg
actttccttgaacaagagaagaaaagcagaaaaaacacattaaagagcccttttaaacaggtgttatcagggaagcaaagtggtggggaaatttcaagca
aatgagaaacagctaatgattatcttcaatgttactgttttcttatcccaaggaagttaactcccataccctactaagagtggggaaaaggtgcagggga
gtgttatagaacatccagcaccaaatccactacttgtgtttaggtactaacaacactcaccaagcacagactgcagaggaaaataactcataaGAAGGTA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGGAAGGTAacacacaaccaggtttctaggcgggaaaaaggtgggtgggcaggagaggggcttaatcctaagcaaaggtggaagattcag
aagcagatcactgagactgctcatcttctgcaccctgagaagtggcctcttcttccccatgttgatctggcactgagtcacttctaggaagctcaaagta
tacgatcccctgataccagttcaactccaagaggagagagatcctgtactacttgtgcagatatccccacagcctgatggcagtgcctggcacatagcaa
gcactcaaatggtcaccatgtaagtgctgttccaatttcacctaatctttactgaaaaggatagcacaaaatgaaagcaataaattcctgctctgggaac
tccaggtgacat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1140 chr10 72863553 72863554 RIP_Alu_chr10_072_02 0 - pAlu10-73085955 NA NA SINE Alu Ya1 tggatatctgggaggaatgccttccaggcagagggagcggcctgtgcaaaggccctgaggcaagagcatgcctagtgcgcttgaggagcatgaggaggcc
agcgtggctggaaggggtgcacagcgggaagagttgcaggagatgagggcagagagatctcagggtccatcatggacactttgtaggccactgattgtga
ggaaacacgtgatatgaataaccagttttcaagaagcaccctggctgctgtgatgaggacacactgtagggggcatgggtgggagtggctagactggtgt
ccaggctcctgcagggatgcaggcagggatgatgagctccaggcaggggagcggtgtgggatctggcagattctgggcatgtttCAAAGTAGAGCTGAGA
GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACAA
AAAACAAAAAACAAAGTAGAGCTGAGAGGgggtttcctgctggtggggatctggctgtgcaagaatgaattgagcccaagcacctgggaggatggcattg
ccattagctaggacaggagaggctgcaggtggagctggctgagggacaagatcggaagttcatttgagacatggcgagtctggcatggctgttgacaacc
aagtagcaacagtgggtcagcagctggacatgctcagccaaggtccaggatgggctggaagcagaagtgtgggagccaccagcagggaggtggtgcttac
cgccaccagaggggcaagatcagcagggctcccaaacccctgagctgaggcaactggacagagaatcagtccgtctttgaaaattgtccaaagagcctga
aaatgcatatacc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1153 chr10 74468391 74468689 RIP_Alu_chr10_074_01 0 - 20268|Ya5ac1988 TGGCAAGTCATCTCTGTCTTTT TTCCATTTCTCTGATCTACCCAA SINE Alu Ya5 acaaacaaacccataaaacaaaaaaggcttttttttttttaagaggcagggtcttgctctgtcatctaggcctaagtccagtggcatgatcatagctcac
tgctccttccaactcctgggcagaagtgatcttcctacctcagtctcccgagtagctgggaatacaggtgctcaccaccatgcttggataatttttaatt
ttttattttgtagagacagggtttcactatattgcctaggctggtctcaaactcccgggctcaagtgatcctcccagagtattggtattacaggcgcgag
ccattgcatccagccaaaaaaggctttacttatgttactgacaatctgttaacttttggcaagtcatctctgtcttttccactattAAAAAGCAAATAAA
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGCAAATAAAaaccctaagaatttactacagcttgtaaatgaaaaagctaataattttgggtagatcagagaaatggaatttgaagtttttgaaatgt
aaacattcagttttgtgctctgaaaagatagttaagtgaactcataaagtctagttaaagtaatataaataatgacctatgcaaataaacaataatctgt
ttagagtggtagaaaagcttttttgattctggtgggaaagtgattttcatttttttactctgaagtgatgatttcctacaatacggtatttatgatatca
tgaatgtaacatgatatatatgtatatgtgtgtatttatttatttattttattttactttattttctttcggagacagggtctcactctgtcgcccag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 425 113 NA intron
1183 chr10 78470917 78471223 RIP_Alu_chr10_078_01 0 - 54645 NA NA SINE Alu Yc1 actggctgccagcaagatgccttttaatacaagataagcacaagccgttctaaagagccacttcctgttggcggggtggcttcctctcatcttcctctta
cccatgcccccactggaagggaagcctgagaggctgcagccaaagacacacagcttgccctccttccctcagggaggcctgtgagatccctaagctccca
tagcggctcaacgttctccttgtaattcaccagtttctaaagactgactccattgtaagccggtagcagtggctcatgcctgtattttgggagcattttg
ggaggccgaggcaggcagatcacttgaggtcaggagtttgagatcagtctggccaacatggtgaaaccctgtctctaccaaaaatacaagaAAGAATTAG
GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAA
ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAATTAGccaggcatggtggtgcacacctgcaattccagctactcaggaggctgaggcaatagaatctcttgaacccagggggcagagattg
cagtgagctgagatcccaccactgtactccagcctgggtgacagagcaagactgtctcaaaaaaacaaaaaagaagattcactacattgtgaaatccttt
cagagatgcctagcatgaagagggttgctgggaaaaccagctaaacttgactacttagaaaaaatgcatattttaatgaaatttggagcaagacctctct
gaaactacattttacttttgtgatactccttttgaaatttggagcaagacatctctgaaactaacattttaccttttgtgatattccttggggggtcaga
aaaatc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1228 chr10 84390752 84390885 RIP_Alu_chr10_084_01 0 - pAlu10-84531890|30847 NA NA SINE Alu Y aatgtttcaggctcatcttatacaccagacctaggattagccatttgtctaagaaaccctgcttttttgtttctttacttgcttgtttctttacttgttt
ttagtgaaaaaatagcattgcaagcccataaatagtgtgggaagggtggtctgtttaatattttaactagaaatggaatatatgagacattatatacaat
aagacactttgtgaaagaaatacagacatacacaagcgcacagatcacaaatataagcttagaaaactgacaaaaaagtttctaaaatattcacaaagac
tttatttgggtagtttagtgattagcaacaattttattttcatatttatatgtatctgtatttttaaataagtatacattacttAAAAAACGACAGACTG
CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGACAGACTGaaaaatttaaagaccctaggttttgtagtaagcattttatattatgagaaa
caaaattactgcaacaattcctatcaaatcgtacaagttgtcctcaaaagaatgtaagcatttgttaatatttgcaaggcactttaaaaataataggcct
atgaggcattatttcatttagtttatgacatattaataatgcaccttatttatctaccacttgaagtagagcttaatgaattaacataatatccaatcat
gtttaatgaagagctttaaaattactcatctaaatgattgtcataattttttaataataattatatttagcacttttattgcatttttttccttgaaagt
attttgcaaacacctagttaatacttaatacat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1238 chr10 85591496 85591801 RIP_Alu_chr10_085_01 0 - Ya5ac1997 GTTTGTGCTTCAGTGGCCTT CAGGTGGCATTACCACTCCT SINE Alu Ya5 cagagtgtaaaatctagtgttcttcattctactgtaccacctgccatagcctggggtggggtcctgctacaagggttcccactggtagtaagatgtcctg
gagtacatcaggactgggtcatttctgcgtactctaaaactgcctttttaggtttccctcatagggccattttccccttaatattaaagtgtgtcagttt
agcctctaggaaggcagtggttgaattacaagtacaaggctatccctcctcataagctcggactcatttagcttgtgtttgtgcttcagtggcctttata
cactattgaacttcatagcaaattcatggagagtaggggaaaatatttttatcctgtgacaatctgatagaatggaatgtatttAAATAAAATCAGCATC
GGCCGGGCGCGGTGGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGCCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAAA
ATAAAAAATAAAATCAGCATCcaccttacctttggtaggagtggtaatgccacctggaaggcagggttgatgggaagctctcaggcagcatgctcatact
ctctggccttggcatttgctcactgggtttcagggggagctcatctaggttccccaattctaacattgtgtactttcttatttgaaattctgataggttt
tcagcattaaaacaattcccagccttttctaatttggaaaattctttcattcatgctacctcaggaatcattattatctttttataggtaactaaattca
gaggggtcagatggcttcctcaaggtcatgctgctaagatatgagagctgaagtttttttattttatgttcactgctcttttataacatacatttatgga
tttga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 480 159 NA intergenic
1238 chr10 85616212 85616404 RIP_Alu_chr10_085_02 0 + Yb8AC1538|7773 TACTTGGCAGGGACCATCTC AACATTCCTCGATGACAGCC SINE Alu Yb8 agccagactttcggtggctccccacagctgaaggataaattacaagctttataacctgacacacaaggctccagaagatcaggtcctgcctgtcattccc
aagcacccctacagaaatgcattttggctcattgaactagacccatccctaagtagcttctgccccagtcagtgactccctcctccatgtgcccagctat
gagacacacaccactctgctctgtaatgactcaactacatctgtgtttctgctacttggcagggaccatctccccacatccactgtgcttatcacagtgc
cagctcatagaaggtagaaaatacagcacaaaacaaatcagtgtgacctcagagtggggctactgaatttattgacataaggaatAAAAGAGACCTTGGG
CGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC
TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGA
CCTTGGGgacgagcttgaactttaccctgactgcttctttgatctcagcctataaatctttcatagaaattctcgtcttccccctcctcatggtaggagg
gtgacaggtgcaaccggctgtcatcgaggaatgtttatgaatgatgacaagaacccaggacttgaggagtgttacttttgggtgttattttttaactcca
gaagacagcacctatgaaaaatattttctgatttcactgcctctatgcataaataaataaatacgaggcaacttgatttagtggaagaaccgcagacttg
gttgaacagatttgatttcagattctagctctaccacttaatggggaagtagggtgataggctataaaattgagacattatccactagccca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 60 483 276 NA intergenic
1240 chr10 85973239 85973240 RIP_Alu_chr10_085_03 0 - Ya5-MLS37 ACACGTTGCCAAACAGTGATTATAG CATTCCTCGTGTCCTGTCTTCTG SINE Alu Ya5 tttgaaataacactgacataaaattgttcagaccttattggcttgaatttgtaatactgggacccagggaaaggaagtgacctctgtgggccctggggct
ggaattcaaacctgcctcttccttcctggaaccctctgctctgttttcatacctcagctgggattacctttaatgctactctgtagggttgggcatatca
caaagccggggatggcctccctgggggtatcccaaagctgaaaagaaaaatcttcgtacattcctcgtgtcctgtcttctgttctctgtctagaagacaa
ctaggaatagctgggtaaaacttgggaaatatagtcatttgcccaggtatttgttatacattatgacaaaaccctggatggtttAAAAATACCCAATTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AATACCCAATTAActgaattttcacattctgtattgttttgataataccttattggtttggcattcaatatcaatgaaagaaaattataggatttattgt
tgtagcctctttgaaaaccaagaaatgcatacaggtgttgtctttcgtggtgttctataatcactgtttggcaacgtgttatataatctctcagtaaaaa
tataagcattgaacacttactttcaaactaatgaggtaggtgattgcttatcatcccattttattgacaagaaaattgtcaagagaatttaagcaacttg
cccagtaccacactggataggagctccattagggatagcagcccaggcatgtggctccaggctctgaggaactgtgcatctggaaggtaagaaggca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
1270 chr10 89804957 89804958 RIP_Alu_chr10_089_01 0 + pAlu10-89946192 NA NA SINE Alu Ya5 agctctgggtgaaatggaaaaaagttacctaatgtcattaagcctcagtttctcatctgtaaaatggggaaataatagacaataataaaaaaaaaaaggg
cctattgcataggcttgtgtgtagacgggatgaaggaatgcataccaaacatgtagctcagatcctggctcacagtaagaagtcgggaaatgtaagctac
ggctctattccttgttgtgtgctaggcacttttgtgtatgagatacaatttcatttcccctgcatccaatagagtgggttatatgatccccattttatag
atgaggagattgaagcatggggaggttaagcaaatttgttcaaggtccacagccatagatgatctggtataagttattccatttAGAATGACTTGATACT
AGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGAATGACCTGATACTtttagaatctttaggaaagttcctgtaggcccataggaaaaggagtttatagttacacctagttcatgactatattaattt
atgtcagaagggaattagaatcatcatcaaaagttagagttggaagtaactttattgagtatttggaaaaatgaattgcaacctcatgtctcctgatgtg
tagtttaaaacataacaaagcaacaacaaacaacaacaacaacaacaatccaacatactaccaaatttatgccaaaatcccaaatggaaaacaggtaatg
tggttctatgctggctggaggacaggcaggacagtttgagccctttcccccacctgttctaaaagggtgtcacaaagccccaaggcacactttaaaaatc
aca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1277 chr10 90763029 90763030 RIP_Alu_chr10_090_01 0 - TNFRSF6 NA NA SINE Alu NA taatacctgagtctacagtacactttaacctctagatctttttaggcaggagttctgtaatacatctagctgattatgaaggaaaagtttcttaagcctc
agactattgtgtcttattgttacttgattatttttaactatgagtattcattataaatttaaacaaactgcctgataaatgctttatgctgagcaggtag
aattgtatgagaaataacaagatcccataatatgtcactgaaattagtaacattattttactctgaaattggcctattactctaaaggatgccatctcta
tgaaataaaatgataaaagccttaccagataaatttattgccactgtttcctagaaagcaaaaaatggaagcagagaaagacaAGAATATTCTAAATGTG
NNNNNNNNNNAGAATATTCTAAATGTGaacttctaatttttccttaattcagaaagaagtacaatcagttgcttgatgtataaaattaggaagctagatt
aagtgattaagaaggttacttttaccattcaatttttattctgaaaggttccggccttgccagaaactaagcaatattgtcttagtttttaaaggcaaga
aacctaaagaattcataaaataggttgaggttatttttcatatagacttattaaaataaataataaatataactactctaaaattttcttccctgtaact
attcttattcttaataccagaaaatggctcaaattgaaattttttttaccatattaatttaaagaatcctaactcccactgagccctggccccaaataag
aaaataattc Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.PMID: 15983781Tighe PJ, Stevens SE, Dempsey S, Le Deist F, Rieux-Laucat F, Edgar JD. Inactivation of the Fas gene by Alu insertion: retrotransposition in an intron causing splicing variation and autoimmune lymphoproliferative syndrome.Genes Immun. 2002 Oct;3 Suppl 1:S66-70. PMID: 12215906.
Direct sequencing NA 0 0 0 ALPS intron
1283 chr10 91537378 91537700 RIP_Alu_chr10_091_01 0 - pAlu10-91678525 NA NA SINE Alu Ya5 tatatactatatattcttttttctctttttatatataatataataattaatatagttcaatatattatatattataaaaaatatatatgatggaatacta
tgcagcaataaaaaggaatgaattaacagtatttgcagcgacctctatgagaccggagactattattctaagtgaagtaacgcaggaatggaaaatcaaa
catcctatgttctcactgatacgtaggagctaagctatgaggactcaaaggcataagaatgatacaatggactttagggacttgggggaaagggtgggag
aggggtgagggatagaagactacaaataggctgcagtgtatactgcttaggttatgggtgcaccaaaagcttacaaatcaccactaAAGAACTTACTCAT
GGACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAACTTACTCATataaccaaacaccacctgtgtcccaataacctatagaaaaataaagtttaaaaaaaagaataga
aaacatttgccttgttacctactacccccccaaaaaaaactgggctaaggacatgaatagacaactctcaaaagaagatatacaaatgggcaacaaacat
attaaaaatgctcaacatcactaattatcagggaaatgcaaatcaaaaccacaatgcaatgctatcttactcctgcaagaatggccataatttaaaaatc
aaaaaataagagatgttggtgtgtacgtggtggaaagggaacacttttactctgctggtgggaatgtaaactagtacagccactatggaaaacagtgtgg
agattccttaaagaactaaaag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA promoter
1293 chr10 92805378 92805684 RIP_Alu_chr10_092_01 0 - Yb9NBC12 AACACCTGAGAAAGGCTCATTG GCTTTGGAAAATACCTAAGAAGCAC SINE Alu Yb9 ttctcagaaagaagcaaacattaatatgtgttgggcactgtctgatggcttggctctaagtccagggcagttgcccttgtcttctaagtactgtacagag
cgaaaaggcttaccaaaatccaaaccaccttgaattaaagaaatctgaatgaggagcggcaccattctttgtatgtgtgtttttaaagtctttgctgtgt
tactgaatgaagaaatgcagtatattatacctctattgatgtaaacgagcctcaaacatctcaattccaccctcttcctaccccacactcatcaaatgtt
atgactgctagtgacactttattcaaattacaaaccatagtttttgctctaaaaaacaaaacacctgagaaaggctcattgctttAAAATCAAGAATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAATCAAGAATCTGtaaaagcaatgccaccccaatcctaaggtgcttcttaggtattttccaaagctctttgctcttttatactacagcattt
tcaggaggagtcattaggtactcccaaggtccaagaaataactaaaaacaaaaaataacctgagactcttttctgcattaccaccagcttcccagcacac
taggtcaccttttacagcagtaagcaaagcaacccatgccacaaaaatcttcacaaaccaagaaggaaaggtacaaaaagaattatattaaaacaataac
gtacatttgtgtgtatgaaggagggatatttaaaaatttaaaatattatatcatcacaagaaagagcagacattccttgctctgcccttgggcaaccaag
aaaatt UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 55 414 93 NA intron
1294 chr10 92959208 92959530 RIP_Alu_chr10_092_02 0 + pAlu10-93100347 NA NA SINE Alu Yb7 ttacattcaattcatttattcagaattccaaatatacatagtattttgtgttgcttagtaactttgtttaatgtgtttacattttatcattaatcctttt
ttctgacataatttcatttactcatctgttacctgactaatattttcccttagtctattaattatgttaattgatggaatcttccttgtagaagaagaga
actttacaagtgagggacttcctctttagacatctgtcagaagtcagaggatggggctgggcacagtggcacacacctgtaatcccagaacttttgggag
gctaaggtaggaggatcatttgagaccaggagtttgaaaccagcctggacagcatagtgaggctttgtctttacaaaaaaaattagattaaaAAGAAAAA
GGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACA
AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCAACAGAGCGAGACTCCGTCTCGAAGAAAAA
AAAAGAAAAAAAAAAAAAAAAAAAGAAAAAcgaagaaaggaattggaggatatctgctgataggagtagagtctcccagtttagtagctatcaatgggca
ttagggaatgaatgaatgaatgtggaaccaatatgcacgtgtcaactcaatgagattgacatgtggaaattgagattcccaaatgggtgtttttgtttgt
tgtttatttgttccttttaatctctaccatttgtgtcttttgccacttctggcatttagatggatagcagatcatagcattagacaatctataaagcttg
ggcaatttctaacatataaatgatttgcaacttcatatgccccactgctctcccttaacgcttccttcttcctagagggatgggcccccacctgtctgct
gggagatttggatgcccttccc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1323 chr10 96753974 96753975 RIP_Alu_chr10_096_01 0 - pAlu10-96895199 NA NA SINE Alu Yc1 tcaatgaatggataaagaaactctggtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgatggaatact
actcagccataaaaaggagtgaattaacagcatttgcagcaacctgatgagattggagactattattctaagtgaagtagctcaggaatggaaaaccaaa
cttcttatgttctcactgatatgtgggacctaagctgtgaggatgcaaaggcataagaatgatgaaatggactgtggggacttgggagaaagagtgggaa
gggggtgagggataaaagattacaaatatggtgcagtgtatattgctcaggtgatggatgcaccaaaatctcacaaatcaccactaaaGAACTTATTCAT
CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCC
GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG
AGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGA
CCTTATTCATgtaaccaaataccacttgtaccccaataactgatggaaaaaaataaaaataaagataatttgacatcttccattctaatttggatgccct
ttatatctttctcttgtctgattgctctagctatgacctacagtactatcttgaataacaatgatgacagtgggcatctttattgtgttccagatcttag
agaaaaggctttcagtttttccccattcaatatgatactagttgtgtgtctgttgtatatggattttatgttaaaatatgtgccttctatccccagtttt
ttgagggtttttttcatggagggatgttaaattgtatcaaatgctttttcagcatcaattgaaatgattatattgtttttaatgcttcattctgtgaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1341 chr10 99098281 99098598 RIP_Alu_chr10_099_01 0 - pAlu10-99239422|2521 NA NA SINE Alu Ye5 ccggctaattttttgtatttttagtagagagggggtttcaccgtgttagccaggatggcctcgatctactgacctcgtgatccgcccgcctcggcctccc
aaagtgctgggattacaggcatgagccaccgcgcccggcctcttcttgcacatttcttattctctctctctcccttacacacacacacacacacacacac
acacactctctctctctctctctctctctctctctctcattgggcatttattctgagcaaaggacttccaaaaagacatttggtgaggggtgagagatag
agtagtaagcaatgcaggcaggatccttgccttcactaagtttatgaggagccagaacaaataaataaaaaatttaataaaacacatgattAGGATAGTG
TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGATAGTGctatgaaggttcggcatggatatcatgctgggtcctggtttgggcaagtgaagggagccatagcaggagggcct
cttggagtggcatttagctaagacctggaggatgagtaggctttagggtggcaaacaaccaaggctcctacatttccagaaacccgggaccaagggcagc
agtcacttgcagcttggaaggtgggctggggctggactcatgtggaagctttgtttgcataccaggcttactgtttctacttagactgtgtttatgtgtg
tgtgcagttggggttgggagcattgctgttaaaagtgcctcactttggctgggaatggtgactcacgcctgtaatcccagcactttgggaggccaaggca
ggcagatcacctgaggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1386 chr10 105087529 105087826 RIP_Alu_chr10_105_01 0 + 4387 NA NA SINE Alu Ya5 ataattcagacttaagaatatcacatgttgattcttacaacaatcctttgagttgctattgtaacctccagtttagaaatacagaaactgatgatcagtt
cagagaagttacatcccaagggttacctactctgagttagtcttcaaaacctatactctttcaacataccatactgtctgtcttgggttatttcttttta
taatctactttacacatagaaactatagaacaaaaaggataagagtctatcttaagatcataaagctgggcacggtggctcacgcctgtaatcccagcac
tttgggaggtcgaggtgggtggataacctgaggtcaggagttcaagaccagcctgaccaacaaggagaaaccctgtgtctactAAAAATACAAAATTAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
CGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AATACAAAATTAGCtgagcatggtggtgcatgtctgtaatcccagttacccgggaggctgagacaggagaactgcttgaacctaggaggcagaggttgca
gtgagtcgagatcatgccactgcactccagccttgacaacaagagaaaaccctgtctcaaacaaacaaacaaaaaaaccggtcaggtgcagtggctcatg
cctctaatcccagcactttaggaggccaaggcaggcagaccacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctacaaaa
aaacaaaaaaaaattagccgggcgtggtggcaggcacctgtagtcccatctacctgggaggctgaggcaggagaatggcatgaacccgggaggcgga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1406 chr10 107667549 107667859 RIP_Alu_chr10_107_02 0 - Ya5-MLS35 ATCTGTAGAGCCGCTGAATGTTC ATGTAGATAGACAAGTTAGCCACTATTG SINE Alu Ya5 gtctgaaggcacctcccatatttttgtcatcacactctcacatcaaaccttggcatgttatgtggtatgttttacatcctgcatccgacatttggaaggc
aacaagaattgcagtttgtccatgtgggaaattgcagtgtagacacgtgataagaggttgaaacctgtggtagagtatgacctactctgtgagtatgtgt
gtttgtgaatgtgtgtgtggttgatgggggcacagaagtgtgtaggcagagaaaggtttacttagtattagaaaatggcattacatgtagatagacaagt
tagccactattgtttagctttctctatggcaaccagctctcatttgaaactgtcacttgatttctcgttattgtagctgttgtttAAGAAGTGATTAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTTGTCTCAAAAGAAAAAAAAAA
AAAAAAAAAAAAGAAGTGATTAATGgacctgagttaatctgctctttcaagaaaggaagcatttcagtctcttagccaactacatggtagtaccgtttcc
tagctgataagtaggaaagggactaatgtatttgtaataaaatagatgcagtggaaccagagcaatgattttgcaaaaaaatgaacattcagcggctcta
cagatttctcatgtgaattagggctgattcggagaaaaaaaacaaaaacccaaatcactgtggattttctcagatgaatttcagtattcaggagggtctt
agtttcttccttagcagacaacaacacagacatccagtaagggagattgatagacctcagaaatgggacaggacacgggtctggacctcgtagtaaagat
gccaccacca UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
1408 chr10 107881537 107881538 RIP_Alu_chr10_107_01 0 + 12931 NA NA SINE Alu Yc1 ctgaattctagagagaagaataaatttactttaaaaagtacctggatcacaaaaaatatgtgagaaataaacagaatttatgaacttgtttagtatggaa
ggccatttttcatataataagtgcaataaaaagactaattttccaaaatattccttaggaatttattattttctgggtcttttaaggagggtaaatctgc
tttgtgtctgttaaagaattatgaattagtgtatacattatcttctcacgagtcatcagtctgttccacaagtagaatctttgatttggtgttatggatt
gagaagctgattggaaccacatagaacactgaagaatcgattggtgaggctgcctctgtggtcaacagagaggacaggggtgctgAAAAACGTGTGCTCC
CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCT
GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG
AGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACGTGTGCTCCaatactt
ctttatgcctttattgatcatgaatatgatatctggtgataaagattatgataatggtattgaactgctctcctttcagcaaggaaaagattaattccag
attgatttaaaaataatatattcttgcaggaaagcttatctttgacttaaaacacactaaaatttactgtattgctacattttttttcccagataagcct
tttgacggaactttctatagagaaatcaacaagttcatttggagaaactttcttaacatagtcacaataatactggtaggtgtcatgtcaataggtaaca
attactcatcatttactctattcgtctatgcatgtgcataaacttacttagtctttacagataccatctgaaatgtgt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1432 chr10 111026384 111026689 RIP_Alu_chr10_111_01 0 + pAlu10-111167520 NA NA SINE Alu Yg6 atatttactgtctcactctttacaaaaagacattgcaatccctaccctagaaagaaaagtatacaagtaacacactattgtaatgtaacatattttaagt
ttttattaagatatgtatttaagtgatatattatttttcatttctactgtgttaagatgatattttataagtaagttacctcaacaactttcaaaaatat
ttatgttaagacatagttccttgggcaatgtacttgttacatgaaatgagattttatttgtttcaaatgtgtcttaacaagggaggactttggcataggg
ataggaaaatcagtgaagaagtttcttttctcttaggcctgactttggtatcatcacagatcctgaggatcataagaagccttaaAATTTACCTACATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAATTTACCTACATTAatgctgatctaatgtttgaatcttcttcacactaaatgaccaccatttctttacatttcttcactgatagataatgcata
tattctcaaggaaaactaacctcttctggtaagccctgattgaaactaggcttggcattaagtcaaaatctgtttcaattcaccaggtcccaaaaagaat
agatttaattcctttcccatattagtgcacttaagtatttgacaactactctatcttcctgacttttaaaaaactggaacaacagaacattgtaagagac
ttatcaaagctgtctgaggattttatccacattttctcattaacgtctcacagtgacactagtcagaggaaagtattatcatccctcttagacaacttgt
ccaat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1466 chr10 115499122 115499422 RIP_Alu_chr10_115_01 0 + 5030 NA NA SINE Alu Yc1 aggcttcggagtcaagacagaccagtctgatttctgtgtgtcacttactagctgcatgatccttagctagttatttaatctctctaaatttaaatttcct
cttttaaaattaggattaatagattttatcctgcaacaaggtagaattaaatgagatattctatgtaaaacaaaaatccccaataagtagtaggtattgc
catgccatataaactgttcggttgtgttttggttaagaggcagcagaactcaagagcatcttcatgacaggaaagcgcaattaacaaagtcatggaataa
ctcatctgatatttcagatgaacaggcgattgctttttgtgacaggtaattgataccttgtttacaggtcattggaaacaacttttAAAAACCTATGCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTGCTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACCTATGCTTgtgtttcataggtatgtttgttttgcaagtttagtatttggtgtctgtgccagtttttgtttgcttttcagtttatatttcatggg
tttatctacagtacaaatagctttgttaggcttcttcctccaaagagttttgtaatactattggaaaaataatacaaaaaagcctagaatagggtgggtt
ggatgggtgggtaggtggagggacagacagatgaacaggttgctgatggaaagcacatctaactgtttcatcggtatcctttccaaaggaacacaagtct
tacagtaattttccctcttcccctttttggttaggtctctatattataacaataggctgtctggactttatagttcccaagtaagtggaaatcagcacaa
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA promoter
1468 chr10 115851721 115852020 RIP_Alu_chr10_115_02 0 + 239100|pAlu10-14115992858 NA NA SINE Alu Ya5 gacagcaaaggccagtggctcatcagtgagaacatcatacctctgtcagaggggagaccctgagcagctcccgacacccacacagggctaggaattgacg
gtggcttagggtacacgtaagaggaacagcatccaccacaggacagtcccttcctcgcgtaccacccgggatccctgctccctgtcatcgccatactgtg
ttctctcagactgtaaggtccttgtcctgtctccctcacatggatcctttccagaccacgggcactctctcaggtcagcaggtccagctgcaatctggaa
tcagcatctaccgtgtggaaatgggagaggggacttggttcttaaaccaggggccttggcattagctacctttggtttttctccagaaatAAGAATGATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATGATTagttagataattataaacaatggggggggggggtagttttgtcgtagttagcaaattacattgaatgtaacaaaatcttaaaccataaagc
aaaacgtgctgggtttctgcttcctgtggtgacatgacatgaaagcccagctctttttccaggaggacacttctctgtttacaagactgcttgagcaatc
ccattatcaactctctccagagaggatacagctgaggcagctcaaattcagaaccttatttttaaagaactaaaaaaaaattagatcctttgataagatc
actcaagtatagtccaaactagcctcccaaattttggagtgccagcaattatgttcaatatctccccatctgcctccccccaaaagaaccaattaatat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1477 chr10 116996332 116996333 RIP_Alu_chr10_116_01 0 - pAlu10-117137554 NA NA SINE Alu Yb7 gatgaatagtttgcaaatattttctccccttctggaggttgtcttttcattctgttgattgtccttttctttgcaaaagctttttattttatatgatccc
atttgtttacttttgcttttgttgcctgtgctgttgcggccttttgcagaaagtcttctccagacccatgtcttgaaggattattcctgttttctgttgt
tttattgttttgatccatttttagtttagaggggagggtctagtttcatactgctgcaaatgaatgtcaacttttcccagaactatttattaaagaggct
gctttttcagagcatttttttcattaatctttattcagtaatttttgtattcaatacagtctctcaaaatggatacagacttgttAAGAATGAGAGAGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCTACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGAATGAGAGAGATtcattatccattatccttttctttctcctggattttctatcttgaggtcactattttccaatcaacttattcgggaggggg
acaggtagagtgaaattcaaatacctctcagaaatatgattaaatctattgataaaaactatttttgaatgtctcactacactaacaagttctttccaac
taaaattccttttttttcctgttaaaccaggaaaaataaatatcacggtgtatagtgttaatatcaaaaggactctgaatgtagacttaactttaaattc
tgaatacaacatcttatagcctgtgtgagtttgggtttaaccatggtaaatcacagtgtcttcttctataaattaaatatactaatgtacactacacaga
tgta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1487 chr10 118255314 118255622 RIP_Alu_chr10_118_01 0 - 17678 NA NA SINE Alu Ya5 ttctggaaggtattgttttctgcttgtttaaaaaataatacacttaggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggca
ggtggatcatgaggtcaggagattgagaccatcctggctaacatggtggagccccgtctctactaaaaacacaaaaattagctcggtgtggtagggggcg
cctatagtcccagctactcgggaggctaaggcaggagaatggcgtgaatctgggaggcagagcttgcagtgagccaagatcgggccactgcactccagcc
tgggcagcagagcaagactctgtctcaaaaattaattaaataaataaataaatacacttaatcaagaggccaccacattttgcttAAAAATGTCATGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATGTCATGAGAatgtcaaaaacttgacgctactgctggagaaatgtttacacactatagacctgaaggaagatggaaaaagttttgct
gttcagttggcttctctcatgctttcagattcatttgagccaaggctgggttttggtttattacacgcttctgtgcctggtacttacgctgctattgtca
tctctgatttcccctctcactgaacaactttggagccactgattctttctagtgaattggggatgtaacaaacacaggaaacaaacacaggagtaacaag
aaattgtgcaaattaacgagctcaattgaagaataaacccacaaatggtgcgagaagacatcagctgagaaggcttgctactaagtaaaatgcttgctga
ggccaaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1487 chr10 118267143 118267459 RIP_Alu_chr10_118_02 0 + Ya5NBC205 ACATGAAGGGCCGACTGTAT TGCTGCTGCATTATCAACTG SINE Alu Ya5 tcaaattaaactgtagttgtcccttgatagcctcagggattggttccaggctccccccacccaggatatcaaaatcctcagatactcaagtcccttatat
aaaatgttgtggtatttgcatacaacctacatatatgctccagcatactttaaatcatctcaagattactcaaaatacttaacataaggtcaatgctatg
taagtagttgctatgttttattgcttttaggtatattatttttattgttgtattgtcacttttattttttttttctgcaaatattttcgatctgcagttg
gttgaatctacggatgtggcactgaccaacatgaagggccgactgtattaccatggcactgaattttctgagttaaagctacttaaaaatatcaccgtTA
GGCCTGGCGCGGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGATGGATCACGAGGTCAGGAGATCGAGACCTTCCTGGCTAACACGG
TGAAACCCCATCTCTACTAAATATACAAAAAATTAGCCGGGCGTGATGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGCGCGGCGGAGATTGCAGTGAGCTGCGATCGCGCCGCTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAATGATAacaaagaatttagaatattgcagaaactcagttgataatgcagcagcagagtttgagaggtcttgctacaatttggaaaaag
ttctactgtgagtaaaatgctatcaaacatcattgtatgctctagagaaacactttgtgaaaggaagagtcaattgatgcagcaaacttccctgttgtct
tattttaagatattagccacagcctcccacctttgccaaccactaccctgatcagttggcgaccaacactggggcaagacctccagcagcaaaaagatta
tgactcactgaaggctcagatgatcattagcactttttagcaacaaggtatttttaaattacagtatgcacattggttttttagacataatactgttgca
cccttacagtgtagca UCSC - Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
Selective database search followed by genotyping NA 50 435 81 NA intron
1497 chr10 119624273 119624595 RIP_Alu_chr10_119_01 0 - pAlu10-119765412 NA NA SINE Alu Yb7 ttagaagccctgggatgagagaagaaacattcctgaggatcatgccctttaccaatattcaaatcacagcctaaattgggtggctgaggtgaccctctag
ggtatactagatctaagacatggcccgcaaatgatcagcattgcatcggaggccccagtgggctggtctggctggcagattacatggagaagatcactga
tgataggtaggtgactctcccagttctaatcaggccagggatgggacaagaggaggcaggagaacttaatgcccagccaagctcagtctttgtcccaacg
cagccagacagttcacattcagccagctgctactgatgaaatttgcatctgaggctggatactgattctcagaaggttttcctataaacacAAAAGATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGATTCaccaatgagttaacactgccctccttgcccataccaatgggaatgattactcctgtgaaggaaattatt
ttattttctaaattaagctagattttattcaaaaaaaatttttttaccaattctcagagatcaaattactgagtctttttattgctttttgggtcactgg
gaaaaatagtctccagacttttcctactgagccgggtctaatcaaaatatccacttctgttcattagctgttcttcacaccatagagcaccttcagatgt
ttataaaccaacctcgaatctctctctcaggcttttttcctatttgagaagcccagttcccacagtgcccttgttgattaggggagggctgcatgtagcc
ttgctgggaccataaccccagc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1516 chr10 122130593 122130594 RIP_Alu_chr10_122_01 0 - pAlu10-122271816 NA NA SINE Alu Ya8 tttgacttacacaagaaaaatgtatttcaaatgccagtgaacaaaaaaaatacatctatgtatgtcacctttgagttcatttgtcaagaggagaaaaggg
gaaaaatgatgtgtcatattactgaaaagtatgttgactgaattccatttttcataaatcagatattttatattaaaaaggagactgctttgaggagaaa
atatgagtttattatccagataatttaaattgaattaatagtatttgaaatatttaaattattagatccaatctgaggtagaatgatttgaattagttat
acaacatggtgcatcgtctttttagtatttttgtcactttctgttctagaattgttcttactctcagcaagaccaattgctgctatAAAATTTTGATGTT
CGGTGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAA
AAAAAAAAAACAAAAAAAAAAAAAACCAAAACCAAAAAAAAAAAAAAAAAAAAAATTTTGATGTTttccgaactatctatccaaaaagatctagattgct
tttcccccacgtaaagcaagaaactaattttgctgactggaaactagaaattgccctgtaacgaattgcaactcgttagttgcaaatgggctttttcggt
ggcatagactcaacttcccaacttctgggcttgtttcagagccatttggccagaaagctagcaaggcaagccctcttcaccccacattcacccaggagca
ggatctcagcttcgtgtctggatagcttttgttgacttctccagacctgccttttcccttccaccactgtaagctgcatcagctggacgtccacttggtt
ccacctcaagaggcactgccaggaagcagagaaagggaggaaagtgaagct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1525 chr10 123266881 123266882 RIP_Alu_chr10_123_02 0 + FGFR2Yb8 AATCATTCCTGTGTCGTCTAACC AAAAACCCAGAGAGAAAGAACAG SINE Alu Yb8 gagaataaattactttgaattttaccaaagtaatggcaacttgttccttaagagaaagggggatgggctaatttatacattggctcaatgactcactaaa
aatatgagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttat
ccctgagggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaacca
agaaaagggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaataGAATTACCCGCCAAG
NNNNNNNNNNGAATTACCCGCCAAGcacgtatattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgtta
acaccggcggcctagaaaacaagggaagcaaaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggg
gcttcagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccaca
ggcccgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttgg
tttgcattta Other - Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR, Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO.De novo alu-element insertions in FGFR2 identify a distinct pathological basis for Apert syndrome.Am J Hum Genet. 1999 Feb;64(2):446-61.PMID: 9973282.
PCR NA 62 575 225 Apert Syndrome intron
1525 chr10 123266986 123266987 RIP_Alu_chr10_123_01 0 + FGFR2Ya5 AATCATTCCTGTGTCGTCTAACC AAAAACCCAGAGAGAAAGAACAG SINE Alu Ya5 gagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttatccctg
agggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaaccaagaaa
agggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaatagaattacccgccaagcacgt
atattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgttaacaccggcggcctaGAAAACAAGGGAAGCA
NNNNNNNNNNGAAAACAAGGGAAGCAaaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggggctt
cagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccacaggcc
cgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttggtttg
catttaggggtggttttccaaaagtatggtgcccagaaggccaagctggttctggtcctgttggctgcagactcccaccaagaggaaagggtagttctat
ctaaattgct Other - Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR, Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO.De novo alu-element insertions in FGFR2 identify a distinct pathological basis for Apert syndrome.Am J Hum Genet. 1999 Feb;64(2):446-61.PMID: 9973282.
PCR NA 62 590 225 Apert Syndrome intron
1527 chr10 123479178 123479484 RIP_Alu_chr10_123_03 0 - 3107 NA NA SINE Alu Ya5 gattgcttgagcttgggagatggaggctagggtgagctgtgattgcctcactgcactcaacctgtgtgacagagcgagacctttctcaaaatacacacac
acacacacacacacacacacacacacacacacacactcgttgcaatgcctatttccctggttttcctagaggatttttaacatgctatttccacggtcat
gtgggtttcacaagctggccctccaagccctctgaacaagctgcctcttcgtgtgatgtgaatttagctgagggagtcactggattcttcatacaccggc
attttcctttctggaatgctgcctcctggattgtaagtacaaaaacacaaagtgaacgtgatgcaaacgcaggaaagaaatgtctttttaacAAATCTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATCTTCacaggagacatgctaagataaaagagcagaacactgaaggccccagtgactgaggggcccgacaagcacctcactttcgagcgggt
ccaggtagtggccgtcaagacactgcacccctctgcgctccaggatttctgcaacagtgaggcccctcctcaaaaggcagtttggttctcgcaacctcgc
gcaatgaggacagggccaggcattacccgctcttagtcctgagccattcactggctttgtgcccttaagaaagttcctactccggtcaggtgtggtggct
cacacctgtcatcccaacactttgggaggccgaggcgggtggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccatctcaac
taaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1562 chr10 128096475 128096776 RIP_Alu_chr10_128_01 0 + pAlu10-128147416|15057 NA NA SINE Alu Ya5 ttaattcagagatgagcttgggaaggaagagagaggacaatttcaccagcagttgaatgactgctcatcattccaatccagcctctgccctggaggcaga
accagatgagagatgtaaatctgtgtatggttcccttgcttctcaaagcatgaccatctcctcatgctgagtaagagtctaatattttaaaggaaatacc
tcttgtacatcacatctcccatccatgccaacttcatctggtgctcagtcgatctgtttcagagctggaggaagctgtctgggtgagctgacctgtacag
agatatgttagtctgtcatcaagatgacacttaagggactttaaatagtgattctgatatcatcgtattctaattgcacctgactttAAAAATGATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATGATTACTaacccccacccacctctggcccctataaaaaggaagtcagtccagagcctgcctgctgcctacctcccagggccctcctgagaata
ataagtgtggattgggcatgagttttaaatgcatagggaacatctgttcattagccaggggactttttcccttagaaaataaagtaatggagaaatctca
caaaataaaaaaggggccatcaagccctaaaacctagtctcttaacatctttcatgacacagttgtcttgaaaaccaggccttgtgggggagtggggagt
aattttctggagttccatgagcatttcaagagctacgcctataggcctaggtcccagaggcccaatatgcccagggcagagagaattcaggatatgactt
g UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1569 chr10 129080297 129080298 RIP_Alu_chr10_129_01 0 + 238615|19840 NA NA SINE Alu Ya5 ctctaagatctgcaccatcttgacccacttctacctgggccacttctgaacaactcgggcctctgggcagaagccctgctgctagatccagttcactttg
tgtctccttgtaagctctcggtccctctcacctgggtctgtctgagatccctacccactctcctccccaaggccccatgcctgtctccacccttccgctc
ctgcagatagatagcagtctggtttctaataaagtggcctctggatcacagcgtgaactgcttcaaagatgcccaaacctcagggattctcccatctcct
ctgcaggcgatccaggcctctcacctggcatgaggccccttagagtaggaatcgagcctccagatgtaccctctcatcacccacagAGAAGGCCAGATGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAGGCCAGATGCtccccaagcccttgcaccttcccatggtctgccccggcgtggaccggctgcttcttgctgctgtctcgtgtgacggctgccatgac
agctgccttcctgccttctgggcatatttcactgctctcaaactttcgtggcttttggagttcaccggcgaatcttgttaaaatccagattttgattcag
ctggtctggggtgggcctcgaggctctgcatttctgagaagctcccaggtgatgtcccagctgctccagggaccatccctgagtccccagggcctgtgct
gacttaagctcctgagagcagaggcagtggctgtggctgccacctctggatctccctctgagggagctgtgccgtggcctgggctccactccattttttt
Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1572 chr10 129455303 129455598 RIP_Alu_chr10_129_02 0 - pAlu10-129494810 NA NA SINE Alu Ya5 gggggtatacaactaagttatattccagttagagctgccagatttagcaaataaaaatagaggaggatgccccccaaaatttgaatttcagatacacact
ttttttagtatgtcccaaatagtgaataaatattcaaatttaattggagtcctaaattttaactggcaattccaacttcaatacaagctcaagttaaaaa
aactacccttaagtttctctgtcctaatttttgtgtatatttacaaaataaatttactctttaaaatttgaatttctattccatttcaatctatcaaaat
ttgaatttaaaaaaatgaattttctttaaaaagtgaaactggaaaatgacaatatatttgatgatcataataaaaagttgaaaaatcttAAAAAAAACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAACTAatgactgcagtaggaatttccacgggaagatttcctgagtggtcaagcaagacttttctgccagcattaatgttattttgacttgattttaagt
tgtttttgatatcaatgcttgtgactaaagtcacctcatatttcagtgccatactacaaagctgacagaaccttggcaacacgaaccctcgtattcactc
cctataccccactacatttgtttgctgtttcaagccactacgtttgtgctcatccagtccctgctaccaggaatgccttccacccagcccaggtggggaa
gcacaatttgcccttcaggactcaggagtaggggttgaaaccgccattgctgacataatccattccatcttgcttccaacctccaagttgtcctt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1577 chr10 130046342 130046659 RIP_Alu_chr10_130_01 0 + pAlu10-130085857 NA NA SINE Alu Ya3 aggcaaagatttcatgacaaaaacatcaaaagcaattgcaaaaaaaccgaaaattgacaaatgggatctaaaccaaagagcttctgcacagcaaaagaaa
ctatcatcagcgcaaacagacaacctatggagtaagagaaaatttttgcaatctatcaatctgacaaaggtctaatatccagaatctacaaggaacttaa
gcaaatttacaagaaaaaaaacaaccccattaaaaagtgggcaaaggacattaacagacacttctcaaaagaagacatgcagtcaacaaacatattaaaa
aactcagcaccactgatcattagagaaatgccgatcaaaaccacaatgagataccatctcacaccagtcagaatggcaattattaaAAAGTCAAGAAACA
GGCCAGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACAAGGTCAGGAGATCCAGACCATCCTGGCCAACATGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCAGGGCATGGTGGCGGGTGTCTGTAGTCCCAGCTACTTGGGTGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCTGTCTAAAAAAAAAAAAAGAAA
GAAAGAAAAAGAAAAAAAAGTCAAGAAACAaagatgttggcgaggctgtggagaaataggaacgcttttacactgttggtgggaaggtaaattagttcaa
ccattgtggaagacagtgtggcaattcctcaaagacctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatata
aatcattctattataaagttacatacgtgtgtatgttcactgcagcactattcacaatagcaaatatatggaatcaacccaaatgcccataaatgataga
ctggttaaagaaaatgtggtacgtatacaccatggagtactatgcagccataaaaacgaacaagatcacatcctttgcagggacatagatggagctggaa
gccattatctttagca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1586 chr10 131263886 131263887 RIP_Alu_chr10_131_01 0 + pAlu10-100435311 NA NA SINE Alu Yf1 ttttttcagcaccacaccacacctattccaaaattgaccacatagttggaagtaaagctctcctcagcaaatgcaaaagaatagaaattttaacaaactg
tctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcacccaaaactgctcaagtacatggaagctgaacaacctgctcctgaatgac
taccgggtacataatgaaatgaaggcagaaataaagatattctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattcaaag
cagtgtaaagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaatcgacaccctaacatcccaattaaAAGAACTAGAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAAACACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAACTAGAGAAGgcaagagcaaacacattcaaaagctagcagaacgcaagaaataactaagatcagagcagaactgaaggaaataga
gacacaaaaaaccctcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacgaaattgatagactgctagcaagactaataaagaagaaaa
gggagaagaatcaaatagatgcaataaaaaatgacaaaggggatatcaccaccaaccccacagaaatacaaactaccatcagagaatactataaacacct
ctacgcaaataaactagaaaatctagaagaaatggataaattcctcgacacatacactctgccaagagtaaaccaggaagaagttgaatctctgaataga
ccaataacagga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1592 chr10 132035577 132035578 RIP_Alu_chr10_132_02 0 - pAlu10-132075177 NA NA SINE Alu Yb7 agataataaaagaataatataatacactttgtgttcaaactgtcaaaaatgtagacagaatagaaaaagttattaaaagacacaaattaccaaactgact
tgagaagaaatggaaaatctgcatagtcccattcttatatttgttaaagaaattcaacttataatgagaattaccccattaaaaaaaacctcagtacgag
atgccttcattgatgaattctatcacttaaaggcaaataagacaaatattgccaaaaatatttgagaaaaaagaatatcatttatcaaaccattttgtga
agctagcggaactctgatatcaaaaccaaagatattagaagaaagacaaaatattcagataactatcacctgtgatacatgatgcAAAATTCTTTAACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAATTCTTTAACAGaagattctacttctactcaaaatgaataaaagggtctagctttactcacctgcttgaatcaactaaaaaaaaaaaaaaa
acagacaaaacgtatgaaacaatggtatacaagacattgggtatcagacaacaaaaaacaataacccacagacaataagaaaatgaaacaagccctatga
ttgtcccgcttactgcttggagaaagttttcaggtctcagggaaaggtggttttcctgaattgaggagatgtagctgagagcctggggaaaccaaggcag
ctagaattcacagggcagagtatcatagaggaaagagcttcacaaagagagaactcaggagatcagcagagtctccctcaagtattcagttgaacactga
ccagtg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1597 chr10 132748479 132748811 RIP_Alu_chr10_132_01 0 - pAlu10-132787987 NA NA SINE Alu Ya5 tttgtcatcttttgtttcaaagtgcatagtatttagatagtctaaaatgtgctctgcaaatacttccttttggaaattttgataataaaagttataaaac
gctagaagtgcagtggttcttcacttttttttttttataatggacctcagagattgtgagaaaaatgagaatctacctagtcatactcatagcaacatgc
ataaaattgtgctttattgcaataggcatgaatatctttaataaagacaaatgactacattttgtaggccatcattttgctttcattttctcgggtgaaa
tttgattcccatatcttgtgaaataattgacacaaatctgatttgggacaagaaaaccgaaaaacaactttcgtaatgcacacAAGAAAATGCGCGTGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAAAA
AAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAATGCGCGTGAGGgaggctcctagactgggctgaaccgggaggcgaaagtccggggtgctcag
ccttggccaccaggcacctttgacatccaattgatcttgcctttccttttgtggcagtaaatgttgaaaatgctgatttgcaaaaatttccatttgcgat
agacttagagcttttagaatttgatttgccaggcaggagtctattttaatctaggagctagagagttctctgagttcagcatgggtccagttgttttctt
tgttcttatgtcagtaagggcatcactgataagttcttctcactgacaccctgccagaaatcaacagcttagaaacacacacttcagtatgatgccatct
cagcaaactgaccatcacaggagcttgcagagt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1601 chr10 133299084 133299398 RIP_Alu_chr10_133_01 0 + 13306 NA NA SINE Alu Yb8 tggtctggggtcagagcctgcgactggtccggcacctgatgccactaggtactcatgctcttcaggtctttcctcctctaaaagtagaaaaaagaccaga
ctgtatcaaggaaaaaagcataggaagagaggaggagaaatgaactcaatcagtagccggcaaggtgcctggcacactgtaagcacctgctatcagcaag
aagcagcaaatctaaaggagagcagtgcgacccccgatgagggcagagcccctctccctgttgtgcagactttgcatgagctataacaaaaagcgcctta
catttcggagtgagaggactagagcatgggcctaatctatttttaaaatgaaaacatcattttaatgttgctattttcacaaatAAAACTTGTATTTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAA
ACAAAAAAAAAAAAAAAACTTGTATTTATGggaaaaggtgtgcatgctttctcttttaaagatgaaaaatctctctttctatttgtagaagctgtgcacg
ggacgccaccccgccggctcctggaacccgaccgtccagagcgcctcattggactgcgctgagcccagtccacctgcaccactgccgtcctcctcgctcg
gccaccgttggttaccatgggaaccatgaccgcagccagcccccgaggcgagaaggcctcttcatcttgccactcgggtcggcctcccatttccatttcc
agagagctcgctgtcggctgcggggggctttccatggccctggtcagccctccccactggtggaaaccagtttccatagcaacaagaaggtgggcagagg
gcagaaggcagaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
585 chr11 83621 83928 RIP_Alu_chr11_000_01 0 - pAlu11-1104836 NA NA SINE Alu Yb3a1 tctttttttcctgtgtattatttccttcagggaccttatgcactcttacacatccgtctattatttttatatggattactatacaattacatgttgaatt
tgtacttttcccccatatatcctgtcatatgttttcacctgagcatctcaatatctaatactcttatttgcttaaaatacacgtgattattttctccacc
ctgacatattttatgttcaactttctaatttctaaaaatggacctaccattgtcctatttattcttgcttaaatcttgatattttctttgagttcatgct
ccttcgtattcactccagctgtgataagtcaccaatcctttgggtttttacttaccagtatttctatttctgtttctatagccttaAAGCTGGAACTGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGCTGGAACTGTGtagtcccagttcctctgtgtagccccccaagtctgctctatttcaatcttctcttaagggaactccttccctccgtttt
tcttttcctccatttgatacatcacacttatagatagggcatcttccctaattactggcttcatcctcaattcccgggacccataccttcactggcttcc
taaatttatttaataattctcatatacctttgagaagtttctaatgataggcaacaaatgaatattgactacctttcttattttcctttattcaccaaaa
tgatttttaggatgtagacaatctgtatgcttcaacatacaccaaacttaccatttttgaaatattttacaatctacttgaaaagacttctttagaccct
atattca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
620 chr11 4598282 4598283 RIP_Alu_chr11_004_02 0 - pAlu11-74692148 NA NA SINE Alu Ya5 aatctccttaagctgataagcaagttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattcttatacaccaacaacagacaaacag
agagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaagga
gaactacaaaccactgctcaaggaaataaaagaggacacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggcc
atactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaAAGTTCATATGGA
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCCGCTAAAACA
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAAACCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAG
TTCATATGGAaccaaaaaagagcccgcatcgccaagtcaatcctaagccaaaaaaacaaagctggaggcatcacactacctgacttcaaactatactaca
aggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagatcaatggaacagaacagagccctcagaaataacgccgcataccaacaa
ctatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaag
ctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatggattaaagatttaaacgttagacctaaaaccataaaaaccctagaag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
621 chr11 4759111 4759408 RIP_Alu_chr11_004_01 0 + 540 NA NA SINE Alu Yb8 tgtaaatttacatatttaattacataactatatatgctatgtaataatactcagcaataaaacttgatgcatgaaataaaatggctgaatttcaaaagta
tcatgcaaagcaaaagaagttacatacagagactatatgtttccatttatataaaattctagaaaagattaaagtataggagtttacagctccagccagg
ggctgggggtagaaaagagggcttattttatacaggcataagagaatattttgactaatgaaagtgttatctattttgattgtggtgatggttgtacgac
tgcataaatctgatgaaactttgaattctgtacacaaaaaagggttaattattgtatgtataattttatctcagcaaacctgccttAAAAACTGATTGCA
GGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGC
CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AACTGATTGCAtaatcaagtattaaactataattttaatattattttaaaaccattctgattatatagtgttgtataaaataccaccctgatgtggtttg
tctctgtgtccccacccaaatctcatcttgtagctcccataattcccacctgttgtgggagggacctggtaggaagtgattgaattatgggggcaggtct
ttcccatactgttctcatggtagtgaataagtctcccaagagctgatggtttgataaggggaaaccctttttgtttggaactcattctctatttgcctgc
tgccttccatgtaagacatgacttgctcttccttgccttccaccatgattgtgaggcttccctagccaaatggaactgtaagtccaattaaacctct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
623 chr11 5063544 5063787 RIP_Alu_chr11_005_01 0 + 238598 NA NA SINE Alu Yc1 tcccactgtttaaatggccctgaagtgtaatgctgaagtgctatcaagtttttccaattgcaaggaggccatcttgtgccttatggagaaaataacgttg
ctaggtaagcttcatccaaaaatgagttatagtgctgttggttgtgagttcaaagctgatgaacaacaatacagtttcctttgaaaaagaaggaagttta
tctagctgtatatgatgtcactttggaaaatgcttcagtagcatttatgatgtgtgataaaggtgtggaaaaatgtgtgttaaataaaatttatgagaag
ccattgttctgaagtgagctcctgcactaggtcccaacaaactaaaccaaaatggagtcacttgtgctaggtaccatgtaatcaaacagaaactctAAAG
GATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCT
GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGG
GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGaatcacagaaatccccaaccagaccagtttttcctaaaaataagatagtcaca
ggaaacaatcagaaaaggcccagtctgtgctggcatgattaataaataccctctgctttaactcttaggaagaaattaaaagtaacttaatattgaccaa
ttttcattttgtgttattctgtttccttgttcctgctcaaccctcaacctggtttgcaaaaaacaactgttacaccctatccaatggaactccttttact
tcttttcttttctttttttgagatggagtctcactctgtcgcccagcctggagtgcagtggtgtgatctcggttcactgcatactccacctttggagttc
aagtgagtctctgcctcagcatcctgactagctgggactacag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
637 chr11 6837935 6838542 RIP_Alu_chr11_006_01 0 - Yb8NBC622 TCAAAACTTGCGGATTTTCC TGCTGAGCTATACTGGTGCAA SINE Alu Yb8 gctgcatatatgtcttcttttgaaaagtgtctgttcatattctttgcccactttttaatggcattctttggtttttactcataaatttgtttacattcct
tatagatgccggatattagacctttatcagatgcctaatttccaaatattttcttccattctataggaagtctgtttactctgttcatacttttgctaat
gcagcacattttacttgcaaaataatgtaaaaaaaatattgatttcattaataggagactgattcaaaacttgcggattttccgtagattacaatggaat
acaatgtaactggggatatgcattaatatttatgtaaaaacttaatatggacacataacacccaaatatttctttctaatacagtcttccattagaAGGA
GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGAattccc
ctgcacaaactctctctctttgcctgctgctatccatgtaagacgtgacttgctcttccttgccttctgcctgattgtgaggcttctccagccatgtgga
attgtaagtccaattaaacctctttcttttgtatattgcccagtctcaggaatgtctttatcagcagtgtgaacatgaactaatacagtaaatttgcacc
agtatagctcagcattgctgaaaaatacctgaaaatatggaagtgacttcgaactgggtaacaggcagaggttgaaacagtttggagggctcggaagaag
gcaggaaaatgtgggaaactttggaacttcctagagacttgctgaatgaccttgacaaaaatgctgatagtgatatgaacaataaagtcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 60 451 357 NA promoter
643 chr11 7673491 7673795 RIP_Alu_chr11_007_01 0 + pAlu11-7675852|228 NA NA SINE Alu Ya5 attgcattttcagacactgcgaacaagaaaagacgtagtgcatgattctccagaactcatcaggccctctcgactcacttggaggggcaatcactacgag
ctagcagggtgaactcagggttgagggggagactgccccctgttctctagttggcctgtgcccctctcccatgtggagtcagttgggccttgggagaggg
atccctgccactcacctaattcctatggggcctaagcttctacagaaggtggagatagtatgtgattaaaagtaaatggttttaccaggaatgtagtttg
gtttaagagctttataggtaagattaaacccagctgcattatctgtggcatcagagacgaatttcagccttagagaattagagccaatAAGAATGGATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAATGGATGAagggaggctttctccacaaaattttcctgcaggatgagaaaaaaggattctttgttcagaatctagaaaatagttcccattcaa
tgatttaagaagaactgaatttgccatgatatttcaggattgtccaatccaaagtttctcagtcttgtcacaattgacattttgagccagaaccttcttt
gtgttcttgccatcctgcatcttttgtaggatatttggtagcatttctggcctctaccagtgacaattcctgcccttgtgacaactgaaaaatgcttctc
attcattgccaaatgtgtcctgagggttgggggtacaaaatcacctccagctgagaaaccacagaaacaccattccatttctgtttcttgtaagtaacct
gtct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
659 chr11 9751162 9751475 RIP_Alu_chr11_009_01 0 + 938 NA NA SINE Alu Yb8 ctttcttttgcctagtaaacctctgctcttaaactcactccttgtgtgtgtctgtgtccttaattttcttggcatgaggcaatgaacctcgggtattacc
ttagacaacaactcctgttcaaagtcaagagcttctaccaaaaagggagaggcttggcctgagagaaaatgcaccagggcagaaaatgtgagccatagaa
acagagtgctcaaagggctcaggcgagtattgcacactagttccaagagtcacgaattccttctgatattctttttcaggtcctgcttctggacaccatt
tatgtcaccctacataacagagagggtctctaaaagaaaataatatttatttaatagggctgtattagtctgttcttgcattgctatAAAGAAATACCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAATACCTGacgtcaggtgtggtggctcatgcctggaatcctagcactttgggaggccaaggtgggaggattgtttgagccca
tgagttcaagagcatcttgggcaatatagtaagaccctgtctctataaaaaaattagctgggcatggtggagcacacttgtagtcccagctactcaggag
gctgagctgggaggattgcttgagcccaggaggtcaaggttgaagtgagctgtcattgcgccactgcactacagtctgggtgtcatagcaagaccctgtc
tcaaaaaaaaaaaaaacaaaactataagaggttgaactggttcatggtttgcaggctgtaaggctgtagaggaagcatagtggcatctgcttctgggaag
gcctctggaatct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
683 chr11 12900318 12900585 RIP_Alu_chr11_012_01 0 - Ya5ac2013|812 TGGCAGATTCTGACTGGCTA CACGTAAGGTGAAAAGGGGA SINE Alu Ya5 ccacctcccaggttcagtggattctcccgcctcagcctcctgagtagctgagattacaggcatgtgccaccacgcccaactaatttctgtatttctagta
gtaacagggttttgccttggtacccaggctggtctcaaactcctggcctcaagttatctgcccacctcagccactctaagtgctgagattacgggtgtga
ggcaccgtattgctccagatttggcagattctgactggctaatttttataccttgacaggcactaaccactaagacctgagtcatcatatactttaaaat
aagtatctacatttaaatttcctttttgaattggttattaggaaaatgtccaactccttaggcaaaacttcctactttctgtctacaaatAAAGAGAACC
GCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAGAACCatgtactccacattccccttttc
accttacgtgccaagaaattcaaagctaaattcagagttcaactacaataattaacttgtctcaggtgcttctaatagctactaacagtcagggtacagc
tccttttactggtttccaatctgctttaacttgtacttatccggttttatgttacccataaatgtagtgagctttcctcacattctgcattttggatttt
atggggtataaatcataaacaaacaaaaatacccaggtgtgcatttttctcacattcaaaggtttaacatttggctccacaaaagagcagctcagcagga
aatcatgcatgtctttccctaaatgagatcagcatctgaactcccaaggctgaagaggcccctgggt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 60 489 212 NA intron
694 chr11 14304900 14305202 RIP_Alu_chr11_014_01 0 + pAlu11-14387378|239025 NA NA SINE Alu Ya5 gatgcctaaattttattttaaataaaaagttatcacacatatcaaactcaactacacaaattgttatactaaaacatttcaggaaatatgtgctttctaa
cgctaatgaagttttagaaaagattgtaaatatacaaacataaaataaacaagtatcaccaattctgaaatttgttaaatcagtaaaagaattttaaggg
gtaaaagttctatatctttataccagctgacttgacaaaattaagagttccagtaagagcaaaatgttgtcctctatttgggagggggaggggacagggc
actgagcaatcaagcagttaaaactcctatgtcgtatcttaaatcacttataacatcaaaaagaaagtaaacatttcaatcctattAAGAATATGATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGCAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAGAATATGATTTTgctattctgttctgctgtggaaaactaagtagtcacttgtttaaaaactaagatgaagcagacatagcataaaccaattaaaat
taaatcaaaacaacagttttaagatgcaatatgcatacatgaatttcttaacagattattatagttaaaataccactgagtgtactcacttcaagtggtg
tgtaaaaataaaaatagctgaagagaggatggtcaaacctcaaaacaagtactataaccaccacccaaaaatgcaaaataaaggaagttgtcttcttcag
agttaagaggaggggaaaaaatctttctacttacacattgggaggaagtggggatggagagaaagaaaaacaattccatgcccttcctaaatgtttaaga
ac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
706 chr11 15976570 15976571 RIP_Alu_chr11_015_01 0 + pAlu11-16059148 NA NA SINE Alu Ya4b cagcctgggcaatagagcaagactccatctcaaaaaaataaaataaaataaataaaataaaataaaataaaaaataaaaagcatacaaattataaaggaa
taaataatgtcatctgttcatatataattgtttacataaaaaatcctaagggatttacaaaatactagaactaataagtgaattaacagtattgcaatga
acaataaaaaataccaaaatcaatcatatttctttatactagcaacaaacaattaaaaaataatattcaaatatatatttataatagcatcagataataa
aatacttgggaataaatttaactgaaaaaagtattcaacacatctacactaaaaacaaaacaacatttgtaacttaaagaccTAAATAAATGGAGGAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA
ATAAATAAATAAATGGAGGAATAatttcctgaatcagaagactcaatattgttacaatgtgattgttcccaaatttacctacagattcaaccaaattcca
ataaaaattcctcaaagttttttcatataaggtgacaaactgactttaaaatttatatgaaaaataaagcagtaggacaaactaaaacaaacttgaagaa
aattagaggattcaaactaccttaatgaaaactaaggctgttaaagtggaaaacgatagttttttcaacaaataccgccagaacaagttgatagacacat
tggaaaaaaatcctgcatcttgtatcacacattatatacaacaattagagatgaatcatgacttaaatcaagaaagaaaaaactataacactcctctaaa
tatac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
708 chr11 16179749 16180054 RIP_Alu_chr11_016_01 0 - Ya5ac2019 AATGGGAAAAATCGGAATGA TGTTCAAATGCTCCTTATTTGC SINE Alu Ya5 ttctactagtcttcctttacaataaaattcattatgtcttcactatgtgtatattaataacatggccttagaatcttcagaagcaaatgaaaatttttca
ttggtttatgttttctttgtgtgtattttcatcgtataagagttgaacatgtgcttaatataaaaattaaaattcataatagtgctgtaaaatttagata
ttttaatactctcattttttacatgggcatttttctgttatttagttaattagtagtgaaagtataagtttttcacttctaaaatgggaaaaatcggaat
gatcttcatatatccttaattgggagtcacttttcatgaaaaataaatttattatttctatgaattttaaattaaaaatctctcttAAAAATACTTTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA
AAAAAAAAAATACTTTGCAaataaggagcatttgaacaaactttatgaaaccaagattattagaacctatacattgttaggtttactttaatgagttata
tctatctatatatagaatatataatatatacatttatatatttgtttattatgagtttctacatattttaaatagtgatgaattgagcctaattattcta
aagaatagtgccattcatatttcagcttgccagctacataaatttattccaggaaatttttatgacatttaaaaatcaactatagggttctatttatgta
atattaccttgtcagaaactgacattaaatgagaacaagttgtgattgtgtattcatatatcctggcttacctggtattgtcctggtttctatacctgtg
ttctt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 456 137 NA intron
711 chr11 16554154 16554462 RIP_Alu_chr11_016_02 0 + pAlu11-16636632|5611 NA NA SINE Alu Ya5 gattccatttatataatgcataaaaacgggcaaaatcgaactatattgtttagagatgcattcataggcagtaaaactataaagtaaagaaagtgactaa
cattaaacacagaatggtgatggggtaacactaaataccaacagggagtatgggggtgtaattgggaaggaaaacaagtggcttctgggaaaataacagt
gatttcattttttttacctcaatgttggttggttacataggattcacataactattagttacacatatatacatccatattttaaataccttatatgttt
acatttcaatttcaaaaaataaaacacaaatctacctcagagttactgtgaatgtaagtgaaataatgtatatggaaaggtctttGAAAACCACAACTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAACCACAACTACacacacactcagttttaaaagttaaagactggaaacacactcactcatagaccaaataagcaatagcccacatgata
taaaatcccactacctcaaaaacacatgttgtcatagtaataagatatatcttctgtaatatcataaaataatgttgtcattgtaataagatatatcttc
tgtaatatcataaaatgatgtttaacattattcttttagagattcattcctttggattaaaacattatcctttttttaacatgccttctgagaaaatata
ctaagctgagaaataaagttataagggattttaaaggaactataatatgaagacttggagtttttcagatttagaataaatatagttcacgtctccttac
aacactcc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
732 chr11 19339350 19339351 RIP_Alu_chr11_019_02 0 + Yb8AC1583 ATTGGAACCCAAGTCCACTG CCTGGTGTATTTTGTTGGTGC SINE Alu Yb8 actgcccctgtcctcgcaaagctcagtccaatggagcaaacaggcatcaagtggatacttaaataaatgtctacttaggtcccacaaactggcagatgga
atataccagagaagatggagttcttgacaatggaaaacaggaagcataatgatgaggtggaaaaaactgtgacaactggagtgatctgagtttcaatcct
ggcctcagaaagtcctgggaaaaagtccagaaatcttgggaaaattttgtaacctcgctaaactggcttagatactataaaatgaggatggcaatagttt
ctgccttgtagggttgtattaggttagataaaatgagtaaagtacttcgcacaacacctggtgtattttgttggtgctgactaaaAGTGAGCTCTTTTTT
NNNNNNNNNNAGTGAGCTCTTTTTTatgtctctcagcctctgctaagcattttgttattgaggttttagtgggtctactttgggactaccatttcttgtc
catagaaatctgagaaaaagtcacactttacagtggacttgggttccaatcccagcatgtcacctctcgagtgacaggcatgactgggtgtcacatctta
tccttgggtatcagtttgctcctggactggtgtgagattcattgacttcttggtctatctagccttttgtgggcatttggtatctaggttgcttttgggg
atggggggatccttctgcacagaaggtaggccaaagttccgggctctaaagtgtcttcctccctggatgccatccacagtcctgaggtcactacatgaag
cccagggagc Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 500 169 NA intergenic
733 chr11 19511831 19512127 RIP_Alu_chr11_019_01 0 - Ya5ac2035 ATGGGGTGACAAGTGCAAAT CAGTCATTGTCCTCCTGGAAA SINE Alu Ya5 tgagtaggtgctcaacatgtgttcaccaaagctgttggacccatgattacaaccatgcactgaagtctgcactgtgggtacagcaggggacaaactggat
caggtcccactagatcaggtccgtgccctctgagatcccacagtctaatgggggagacaagcaataaacaaataagcaaataaacacgatgctaccaggg
gttggccaacactctgcaggcactaagcagagagatgcagtaaggagtaactggaatgataagcaaggtggcctatgacatggggctgtaaaaatggaga
cccaaatgaagaggagccacaagggtggcatggggtgacaagtgcaaatgtcctgagataaaacaattcagtgtgtctgtggatAAGATAGTTCCCAGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGA
TAGTTCCCAGAGgggagagagagagagacagacagacagaaacagagggggtgggggtagagaaagtgcacgtctcagagaaggtttcagtatgtgatat
ttccaggaggacaatgactgaaaagacagggagaacctggtttcattggggtttcacccagccctgcaggaggatgccagagggaggaaaatgcccagga
acacacatgcccaggacatgtgtggacatggtcagctgatggcctttgtaggagggagagagaattgtttacaccaatgtttgtcagccttgaagaaggg
ggtggatataattttgaccccaagaacatttcacaatgactgcagatatttttggtcatctcagctggggatggggagttgtcgctaatggcatct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 491 179 NA intergenic
773 chr11 24749532 24749533 RIP_Alu_chr11_024_01 0 - Ya5-MLS18 CTATGATGTGCTATGGAAGGTAGGT CCTAGTCCTCATAAATTAGTAACCTG SINE Alu Ya5 atgagacttattcactactgggagaacagtacggggaaaactgcccccatgattcaattatctccacctggcccccaccctttgacacgtggggattatt
acaaattaaggtgagatttgggtagggacacagccaaaccatgtcagtaattaagcttttatctccaaatttggaggtagtgtatttttcttaattcatg
taattcattagtactagtaagaacagacttgaatatggtcttaatatattctcaatatatgcaaagtcctggccctgtgttgtctttgtgaaaaatgtga
actatgatgtgctatggaaggtaggtttctaacttcaaggtatttgcatcatgttaagaaaataattctgagaaatgcaaagttaaaAATCACATGAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTACCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATCACATGAATAgatacgatgccatgtatatacataagacactataacatacatgcacacactattgagtactccatcattggtactca
caacttgtttctcacttattcaatagccttcaatgatgacctactgtctactaaagctggttatcatggactataactctttattaagaaaggttgcctt
taatacacaggttactaatttatgaggactaggttctgcaatgtgaaagctttctatagtatcaaatctatatttcccatgaaaaattaaagcagacaaa
taaaaataaacaaaatctgaaaattcattgcggctctaggtcagatatgacttaggctttactattcagacatgatctgtgcaatatgtggatacaggaa
tttgttactt Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 62 631 309 NA intron
779 chr11 25521062 25521389 RIP_Alu_chr11_025_01 0 + Ya5ac2050 GTGCCAATGTATGCAACAGG GGGCGTCCTCTCTTATTTCC SINE Alu Ya5 ttacttctgaagctatatcatccaccttacttcctaggaatacttcctgccagtgtttttcacaaatgttattattgtgttttgttgaaaacaataacaa
acatgagtttacctggattgtgcaacaaaatgtgaaaaataatttattttctgatcatgctaaatccacgatttggcattttatatcataaacatagaac
aaaacaacatccaattatgtttccttttgaaaccttcagaactactacattttcagaatgccatctttattcagtattaattacacccctaaaatcaacg
ggatagaaaagtgagtgccaatgtatgcaacaggaacaaaagtctcatttgcacaggaaatgtccatctcttccctagcatggcttAAAACCATGGATGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACAAAAACAAAAAAACAAAAAAAAAAACCATGGATGTtaccaaatcagttggaaataagagaggacgcccataagaagggactgttaatgttgcag
gaatatgaccttgaaagccctgaaaggaaagagatgtgccactcctagagtattgcttgctacctggcatgggacctgaaaaaggggtgagatgactgct
ctgagacccagtatgaatgattgcatgtgcacagcgcagaaaacggtcactgggattcctaccacccttgggtactgtagatcagaggcagcactctgtt
cagaactcagataagcaagaaccaacacataggccctcataatgtagctcaagcccatgggtcagaagtggactatttatgtcccagaaactttatggaa
tactgtggctgatactatgagggaaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 460 341 NA intergenic
793 chr11 27264462 27264778 RIP_Alu_chr11_027_01 0 - pAlu11-27346935 NA NA SINE Alu Yb7 cgtctctactaaaaatacaaaaaattagccaggcgtgatggcacatgcctgtagtcccagctactcgggaggctgaggcaggagaatagcttgaacttgg
gaggtggaggttgcagggacccaagattgcatcactgcactccagcctgggcgacggagagagactccatctcaaaaaaacaaacaaaacaaaaaaaaac
aaaaacttgtgggctgtagtgcttagagtagtgcttagagtaaaatttccagccttagataattatattaagaaaaagagactgtgaattaaggagctaa
tcatctaatctaagaaaattaaatatcccagaaatagtagggaaaaaaaagaaaggtacgagacgcattaatgacacagtcttAGAAAACAGAACACAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAAACAGAACACAATaaaaagaataagaaaaaaagaaaaactgctgttgtcttagtttcttcggaagcagactctgagatga
agatgagtgtgtatttcacccgtgaaggaaaagctccgtagagaagcaggtaagggggcagtgaaaactggccagggaaaaataggcaagggtaccattt
caggccaggtcccagggagaacagctcccatctgatcccacggtgggtttctgatgtgtgaagtacactcagcgttctttctcctggggcctccatactc
ccacagctgtcagttattggctaagggctaactggagtggatgtggattcctagacacttcagtgtctctgtgtaagtggccaaagtgcctccagtagcc
tgagggcagtcttctg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
796 chr11 27778805 27778994 RIP_Alu_chr11_027_02 0 - pAlu11-27861288 NA NA SINE Alu Yb7 acactttcaaccaattgccaatcagaaaaattttaagtctacctatgacctgaaagtcccctcacactttgtctcgcccttccagattaaatcaatgtaa
atcttacatgtatttgattgatgtcttctgtctccataaaatgtataaaactaggctgtgactcaacaccttggacacatgttcttaggatatctcgagg
gctatgtcttgggccattggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttaactgttttcatcaacaagtccattgagtg
cactgagaacaagggggtggcatgtcatcattctgacccctgggggtgaattgtcttggaatacacacacatgaaacctaaacataaaaatgtGGGGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA
TTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCGGGGCTCagga
agcaccttccatattacagtataactctagtgtgattgagacaagagaggccctatggaggactccattcatggactggtcacattactagaaaggggcc
ttgagggccacttctgagttaagaggtaggtgtgtgtgtgtgtctgtgtgtgtagagcagatagtactcagttggctccagcaacctgctcccaccacca
ctagcagaacccagtcacatcccaatctgacttgaaccagagaggccccagttttagttgacctactcttgtcaaactcagcaaagactttcatgctgtc
aagtcaattctcagtcctttccttaacttgtcttttagcccaggcctctatccttgaccatcccagctgggagtgactatgtttggagc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
811 chr11 29704861 29705179 RIP_Alu_chr11_029_01 0 + 5F4 CAAATTTTCCTTCAAGAAAATAAAAC ACATGTATGGTATGTAAAAATTTAG SINE Alu Yb8 tctagtccacaggaagacctgaaccactgtcgccttcacataggttaactcggaaggcaaaggagctttgcctaagctggtggaagctatcaggacaaat
tgcaatgacagatacaatgagatccaccgtcactggggaagcaatgtcctgggttcccagatctgtggctcacattctcaagctcaaaaaggcaaagact
aaagaacttgccactaaagtgggttaaatgtatgctgttgagttttctctacataaaaaaaattaaactacaaattttccttcaagaaaataaaacataa
attattgtttttataaattacccagtttaaggtattctgctatagtgggacaaacaaactaaaacaaaatatgcctactattAGAAAATACTCTTTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAAATACTCTTTTTTGttgcatatacatgtagtccagttgaaatatgttacaaagagaataagtgtttcctaaattttca
cataccatacatgttagtttgccatacacataagatccatctatagatctccttaatttccttaataaattcagaagaactttactgaagtacatatttg
gtgccactatggatatcaaataatataatgctgcatgatgatgctgcataactcctacttattgaacatttataatgtaccaggtagtatgctaagtatt
ttgcacataatttaactcttgcaccaacactggaaagtaggtagttcaccccatttttgcaagaaaactgaatcttagtaaaccttagtaaagaaagtga
tacagaatagaattttaa UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.PMID: 7714898.
Library screening NA 0 0 0 NA intergenic
822 chr11 31109023 31109323 RIP_Alu_chr11_031_01 0 + Yb8NBC296 CGAGAGAAACTTGTCACTGGA GCAGAGACAATACAGGGAGGT SINE Alu Yb8 ctcagactgagaaagacatactggtgagagccacaaacaaccagtagccaacatgtaaagtgagcaaaaaatgaatacttgttttaagtcactcagctat
tgggctccttgacttatacagcacaatctaccaaaagctgataaacacattgcattctactaaatccctacaatcctatataacttatatagtaggttac
taagagtcagcctttaactgtaaattcaaatgagagtctagaaatttctatcatctattcataaggaagaccctcatgccagtgaaatttggacaaaact
ttggatatcatgggaatggaaggcagagacaatacagggaggtcaggaggaatcctaagggaaacagaaaaaagaaaatgagatAAAGAAAACAAAATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAGAAAACAAAATTAatgaaaagaaaaagaaaagaaaaggaaggaagaaattaaagggagaaggtgattgggggaaatgagaagggaagaaagagaaag
aagatgtgaaaaagaaaagaatggtgtttataggctataaaatccagtgacaagtttctctcgttatcctccttttcttactttttggaatgaatttcca
tgctttccatagtactgttaattctacaagaaagttgtaatatttaaaatatggaaataataaatgatccagtattagtctatgctttcagcctcatttt
caccaccagatcatactaccctccagcagtattatccttaaaaaacaatggataatagtgtataacatccttgaagctaaagaccaatacaggacaggtg
UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 541 225 NA promoter
828 chr11 31873303 31873618 RIP_Alu_chr11_031_02 0 - pAlu11-31955758 NA NA SINE Alu Ye5 caggcacaaaaaaattaaggaaggtccagtctgtcttctcaagtaggtcataaactgattgcaatacaatgtgataaattctattaacacacacacagtg
caatgggttaaaagacggggtagtatttaattctgcagtgggcctgaaggacataggaggtcaaagaaaactatcaagagatgccttgggttgaagtttt
ctagcatatcaatgatcaatttaacattcatttgcatcttatggcccacaagctctccagagtcaaggaattagttctgctattcctaactttgctttag
gaacctccttgctattcttagctctcaaacaaagactgatgggaaaacagtggaagttctggaccttaagaacagattgaaccattAAAAAAAAGAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAACCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAATAAA
AAAATAAAAAATAAAAAAAAAAAGAAAGAaagaaagaacagattgagggatttttctcggaagttagacaaattttaaaactttcaacctaagagaaaag
agtcaggataaaaatcagcttcctccctccaacagaaagctagtgttacttggtagagatggaaaggaaagagacaacaaataccatcccaccccacttt
cacttttactctctccaaagaaataccatcaccccatcaagtgtaggatacactaagacgtaggggatggaggagactagggtcatctctgcatatttaa
acttgcatccagctacttgtcttgaattccactcctaccctaaggcctttggcaaactcagggaacttaaagttataacagattgactgacaacctccca
gctcacctgtaatcc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
830 chr11 32243229 32243549 RIP_Alu_chr11_032_01 0 + pAlu11-32325708|238353 NA NA SINE Alu Ye5 aggctgctgttgttatttaggtaagagatgatggtggcctggtcaggatactataaatagaaatgataggtatgactggataggaatggcgagaaaggtg
aagagagggaaagatgaagggagggtgagagggaaataacttctacttggatgacttccatgtgtttggattaacaacgtggtgagcagtgcacttcaac
ttgacccatctttctttcagagaacagctttccagttgccttgagaataagtctgcagaacctaattcctacttcttttcatcttgccagccatggacga
aatccttcattaattaggaaatcagacaaaaaacaaactaaaatgttcccagaaagaggtgtcaggaagtagaatatgtatggaattAAGAAAAGGTCTT
CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAAGGTCTTtattgatcatctgttccagccatgttaatagataagaaaaatgtgactcagattaaggagccatgac
caaaaataaacagccagtcaatggcagaaccaaggctagaatccattcttctgattgaacaaatatgaatgaagcagcataataaatgggtaaaataatt
acatgtacataatagctatatatttgtatttttatgtcctctctcctccaatcattggggaaagagttgtggcatttgaatgcaaattgaagggtacaat
ttagcactgatttttgaagacagcttgctacacatgctatgggacactaaactgtaaaacactaaatgttacttaaggaaaggaaggaaggaatttttaa
cttcaaattatgttgttgaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
840 chr11 33494263 33494572 RIP_Alu_chr11_033_01 0 - pAlu11-33576739 NA NA SINE Alu Y accacacagttgcaaagtgagccagtctaattctggggagcttagacaaatgtggctgattccatacctttgctaaaaaaaaagttgccaattcttcagc
cataggagaaattaaaggttggattggtcagaaagaaaacaggtgttttttgtttgtttgtttgttttaagactgaataattaggaagaaaaaggcagag
gagggaatttattttttccctcataacttcagagaattaggaataatggcttcacatatccatccctgtaaggaagataggagtaagaaaagttggtaga
cttctgggcctcaacttcttgctcagatatagctgtggtaatttggttgctcagatttctcgctcagatatagctgatcacatctcAAGAATCACCTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATCACCTCCAGgctgattggtagtggctgcctagactgttatgaagaattctaagcacagtcctggattggcagggaagggttctgg
gatcaattagcaatgtctgccttgggtgctgtagtacagaatggcagcatgaatttggacagatgtttagcatctctggggaaggtgatctctgaggttt
cttctagcatctggtccaactgcattcaatttcagatgaagctaggaccaataatgcttgagtgacttgccaaaggtctagcaccagaactagaggattc
cctctaatagtgttcttgctaccaacagatgcatcacgttacttttctggagcactgactcagagatagaggaggtaaaatgaagcaaggagaagcaaag
ggaggaggtt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
872 chr11 37623222 37623518 RIP_Alu_chr11_037_02 0 + pAlu11-37705700 NA NA SINE Alu Yb7 tcagaccttggtagatagctgtaactgaaaccacaggaagtgaaatctcagataagagggtgcctctgtcatttttactgtagttgtgattgtaggatgc
caaataaaatcaattaaatttatatttatgtttagatgaccatggaccaggttgctttgagagagtaaaacataatcaggacatagtgacaactcttaaa
aagtgtgtaatttatcgagtgtaaagggaactgagagttagaaacatcttgtaagacagtgaaaacataagctcctacccacatttcataaacatatgtt
tatttctgcccaatatcttttgagagaatcatgtgtattaatttttattgctgctgtaaccaattacaacaaatttaatggcttaaaatGTTATACTTCT
CTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTA
TACTTCTgtaggacagaagttcagaataaatctcagtgttctaaaattaaggtctttcttgatcttggctccctctgaaggttcttggggtatatccatt
tcttatctttttcagttcctagaagccacctacactatgttcctcagcttccagccccttccagcaatggcttcattctgattactgtttccattattac
attttcttctctgaatctgaacctcctacttcatttttataagaattctttggttaggttgagctttcctgcataagctagcataacctcagatctcagg
attctcaactgaattggatctgccaagttccttttcccattcaaagtaacgtattcacaggttctggagattagaacatggccatcttgaaaaggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
874 chr11 37918638 37918941 RIP_Alu_chr11_037_01 0 + 238373 NA NA SINE Alu Yg6 caggagtaaaatatgcaaataaactggaaacattatcatgctaagaaatagattcttatttagccttgctgcctctggaggagctgtatgattatatgtt
acatgataagttagtttaaaataataacaggcaattaaaaaaacttttaatatttttggagctattcaatcaccaacatttatttgtggattctcctgtg
aagacagacttgccctttttagtgctctgtgggaagaaaccgaaaagaaaaaaaagacaaagtagctctcagtctacaggaactgcagtctaactggata
acaaatctatgcattgaaatgcattcagtgcccttacaaataaggacaaaggctgaagcaaattaagacaatggggatggaataAAGAAAATGCTTATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGAAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGAAAATGCTTATTAtattagaaacagaccaactgttgagtaagaacaggttagtttgggtgagattaaggacaagattaatgataaatttagcta
tcaaactcatttgcttctttctgtatttttgacctagactcattaaacaataaaataatgaattgctttttatttcaatacatagctcatagaaaacttt
agattctagctgattcagttacattattgaatatcaattcttataaaaatgaatagatgatgacaaggtttctttaaagggtgtttatttatttattctg
ttatagattcagggggtacaagtgtagatttgttacatggatataatgcataatggtgaagtttgggcttctgctgtactgatcactcaaatagcgaaca
ttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
880 chr11 38757651 38757652 RIP_Alu_chr11_038_01 0 + pAlu11-38840229 NA NA SINE Alu Ya5 ggttttgaataagatattccttgcctgtttaactttgtccaatgcaatttttcttcgaaacgcttacaagtgaatagagcacttatacacacaggatccg
aatggttattatttggcatggagataatagagaaaatgattcttcagaaagaaaaatgaagcatatgcaaaaataaatcagtgatgtaagtaataagtgg
ccatgagagaaagaggaagaggaagagtcgttggtcttcattactggcagtttccaaatattgactgcagaccctcaggagagcttcctgcaatataaat
ctataagatatccctgtattcctggtttttgtttagttgttttcaaatgattttctgttaattataaccaaaataattttgacttagAAAGTGGTTTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGTGGTTTATTtaacatgggaacacgccaactcaaagtgttgactatgtgttaacattttttgactagcatgcaaaatcaaggacaggagttacg
ggaatatgaatggcattttgtcaaagattttctctaatatgcctgcttcattttgagaaaatatgtatttggtagaacatcttgtcatcacctctaattg
atacttctataatgtggtagtgatgggaagcataatgtgactggagagtcgacagtccttctgtaggagtatgtcactttgcttttccagtgaataacac
tgactcaaagcaaagataatttgaaaaccagaaaaaaggatgggtggataaaattggagatggggcagaaacattagaagctcatggcttctaaaaaaaa
aaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
888 chr11 39761703 39762026 RIP_Alu_chr11_039_01 0 - Ya5ac2045|pAlu11-39844195|5052 GCCACTTATCCGTTTCAGAAGAT CTATGGCTTTTCCTGAACTTTCC SINE Alu Ya5 tgtgccattgtactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaaataaataaatagaaagtttgaattacttccttaattccccaat
gactcaaccccaacactttgcaggctacttacatatacagttgtaagaaggagattgctcttttcacatatgtatacatgtatatgtatgcatataagta
tgccttcatttgtaactcaatatcctaaaggatgaggattgctagaaattatatgacactaaattattcaaagccacttatccgtttcagaagatatata
atggaagtctgtattcaagatgtgtaaaaatatttcactgaaatttttctttatggacaaattggtagataccagaactctgttaaaaATATTACAAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACAAACAAAAAAAAAAAATATATTACAAATTgtacaaatcgtactttaaaatctttcctgtaatttttttcagccatgttatatgttcaagcaatt
taattgctcctttttataaagatttatgctttttgtgttttcaaaaagggaaagttcaggaaaagccatagttgaatgtagcatccaataaacatgttcc
ttataaatgagataatgaatctttgagaactgagggaactactctcacttatttataactctacttaaattccaagattcctaaagagaaaaatcaaaga
ttgatcagactagccttagaaaacattaccacgtattctgtagaagaaatagtgttgtgattttaatgagtaccacacaggctaagggtagatttgcctt
attcttcttcctaaaatcttaag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 60 599 264 NA intergenic
897 chr11 40963608 40963916 RIP_Alu_chr11_040_01 0 - pAlu11-41046081 NA NA SINE Alu Yb7 cagagccttctgaatcaaacttcttttatatcatatcactttggctttatttttattttgaaacaatttcaaattcacagaaatgttgcaaatataatgt
ggaaaactttcatatatagtttaactagattcactagttttactcattttgctaatttgttttatagttggtctgtgtaaaatgtatataaatgcttaca
cgtatattaattattataataaaaattatatatgtagttgatttttaaataccttgagagtaggttaaatttatcatgctgttttaccccttgactctta
acaacagcacagttttcaagttcaaaatatttaagtgacacaatgaatactatctattctacaatccatctacttgtcaattttttAAAAATGTTCTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAATGTTCTTTAtagctttctttttttaaccccaatattaccaaactacaagaaaataaaaaagaaaaagccatctttgttaccatagtt
atgataaggtacttttccccccctattaactgaaacacaaaacaacaaaaacaaaaaggaagataaatgtatctttcagtcactcagcggaagaaaaacc
catagactcataactgtgtaaattttaatgactggccattctttctgtaatgtgtacaaggaggaaaaaagcatgtatctcaaaagacaatagtgatgaa
actgaatgttactgttttcatgctaaactaagcccattaggtaagaatcctgagaagtatgaacaagccacacagaactcttgggtctcctccccctgct
tgtcttgc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
908 chr11 42420682 42420985 RIP_Alu_chr11_042_01 0 - 3303 GGATCACTGATGCTTCAAATCAAG CTGAACCAAAGAACATGGATCTG SINE Alu Yb9 gtggaatcttagttatgaatctcctgaggcttttcagtgatctgttggctactattactctaatcacctctatcttctgtaagagtcagaattacccatt
tcctgaaagaatccccacatatctgaaccaaagaacatggatctggcgatagaaataagtaaaaaatcttttgtagaacaactcatgcgtctatttctta
ggactcactctgttttcaacccctcccacccgaggggagatggtctgtccatattatcatttagcacttacagagaaattttatgattgagctgagacat
ttctcaatatggggaattgtgtagttaacattttcatagtgatttgccattaataaaagcatacttcctgttttaattgacaacatttatttGAGAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTTCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAGAGAAACCatagaagttgtgatggtttggatcctagcctctccccaaagtcaactagactttttactttctactacaaatatatcttttctttctcc
tattgtttctcctcttctttccccacactgtccacttagaatatagtagccattgacaacttaatattgaaataataacctaatgggaacaagaaagagg
ggcttgatttgaagcatcagtgatccttactataaatgggtaactgggttacatggctgaaagagtgattaccttgtgcatcaatcacttattggattat
taggccaacataaaacatatagaaaaaattatgatcagttcagttcagttaaacagacaaaaactgagcgtttactgtggatcaaggatgccacaatgct
aaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
916 chr11 43419241 43419242 RIP_Alu_chr11_043_01 0 + 18402 NA NA SINE Alu Yb8 tattatggccctcatcctgttattcttctgtttaagaaacaagaggctccctttacaacaaatcctcttcgtgactttcccacacatttgtaacatcacc
taccttttcctcagtatcttatttgttactatcccctgtatacattctttattctaattaatttgaaattggtaatgccctcacatgtgcctttactatc
cctgtatgtatgtgtgtagacaaatgagtctatgcatacatgctttaaaaaaaaaaaattgttaactctggaaggctggatgcagtagctcacacctgaa
tccaagcacttagagagcctgaggtgggcggatcacctgagaccaggagttcaagaccagcctggccaacatagcaaaacccAAAAAAAGTAGCCAGGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCTGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGTAGCCAGGTGggtggcctgcgcctataatcccagctacctgggaggctgaggcaggagaatcacttgatcccaggaggcagaggtttaagtga
gctgagatcacaccactgcattgcgctccagcctgggcaacagaacaagactctatctcaaaaaaaaaaaaaaagtccctatggggagtgacctccctga
ccctctactcttatctgtttaaatcctgtctcaggtagtccgcctttctctaagaagcattttgtgattacatgcaaatattttttccctctaaaaaaaa
attaatttttctcttattatttcatgtatgtagttgtctgtctccaacttgattataaattcattatatttcatttcttaaggttagaaactttccatt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
919 chr11 43848420 43848741 RIP_Alu_chr11_043_02 0 + 9989|pAlu11-43930898 NA NA SINE Alu Yb8 agctgagatctgaaccaagtctcgtttgacatcatagttcatagactcaaaatgatgccattcccatggttctgaggactcagtagctctacagaggaat
ctgctaagccatctagataaaaccatcaagaatgcttaataactcaggggctgctggattacactgctaccaactcttcttttttgaagtcactgaaaga
caccagcaatgaggtcccaagaaatggttcatgtcattttaggaacagtcctatctttcctaatttggctttcattctggcatgtatttgcagagaggtg
gcacggtggcatcatgtggcattgtggttcagtcttctttgtaaaatgggtctaataataataatgcctgtgtaactgggttcttAAAATTAGATCAGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATTAGATCAGTGtaggcatgtaagtgattggaacagcacttggcatgtaagaagtgctcatgaaatgttaactaat
gttattatttgctattatttagaaataagaatgtgtaaatgttgcctactccttttagggataatgtaactatcagaatatcttcaagctgtctgaatgc
tacataatttaaaaccttgacataattccctatactccatagtgactttgctaatgactataacctctagtgatctcttgttccccaaatttttgtctgc
cctccataatttcacatccaattacactgttttttaattgtatctcacacagtttaccctgtggttcactggatggagattttacctcctgcagcatcta
caatcgtgctgggcattgaac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
935 chr11 45992824 45993158 RIP_Alu_chr11_045_01 0 + Ya5-MLS36 TTCTTTCATTAATCTCCAAATGGC AAATATTTGCAGTCTATGTAGCCAAC SINE Alu Ya5 gataatggcctccagctgcagccatgttgctgcaaaggatattatgttgttcttttttatggctgtgtaatattccagtgtatatgcaccacattttctt
tatccaatccactgttgatggacacctaggttgattccatgtctttgctactgtgaatagtgtggcaatgaacatacaagtgcaagtgtactttttggta
gactgaggtattttcctttgggtatatatccagtaatgggattgctgggtcaaatggtagttttacttttattctttcattaatctccaaatggccgagg
ctgaactaatttacattcccaccaacagtatatgtgttcccttttttccatagcctctccaacatctgttatttttgactttttaatAATAGTTATTCTG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA
AAATAAAAAAATAAAAAAAAATAAAAAAATAAAAAATAGTTATTCTGactggtgtaaagtggtatcactgtgcttttgatttgcatttctttgatgatta
gcaatgttgagcattttttcatgtttgttgactgcttgtatgtctcccttcaaaagtgtctgttcatgttgtttgcccactttttaatggggttatttat
tttgttgttgttgttgatttaagttccttacagattctggatattaatcttttgttggctacatagactgcaaatattttctcccattctgtaggttgtc
tgtttgctctgatagtttcttttgctatgcagaagctctttagtttaattaggtcccaaatgtcaatttttgtttttgttacaattacttttgaggactt
agccataaattctttgcctaggccaatttccaga UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
943 chr11 46974422 46974692 RIP_Alu_chr11_046_01 0 - pAlu11-47049355 NA NA SINE Alu Yg6 aggtcgggttacccgcaaagggaagcccatcagactaacagcagatctcttggcagaaactctacaagccagaagagagtgggggccaatattcaacatt
cttaaagaaaagaattttcaacccagaatttcatacccagtcaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctga
gagattttatcaccaccaggcgagcccctgaaggaagcactaaacgtggaaaggaaaaaccagtaccagccactgcaaaaacatgccaaattgtaaagac
catcaatgctaggaagaaactgcatcaactaaagagcaaaataatcagctaacatcataatgacaggatcaaattcacacattAACAATATTAACCTTAA
CTTTGGGAGACCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC
CGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTAGACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATTG
CACCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAATAAAATAAAATAAAAAACAATATTAACCTTAAatgtaaatgggct
aaatgctccagttaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctatattcaggagacccatctcacatgcagagacaca
cataggctcaaaataaagggatggaggaagatctaccatgcaaatggaaaacaaaaaaaagcaggggttgcaatcctagtctttgattaaacagacttta
aaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatacgcacccaa
tacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
957 chr11 48889701 48889702 RIP_Alu_chr11_048_01 0 - pAlu11-48964719 NA NA SINE Alu Yb7 ggactgctttgaggacttcgttggaaacaggaatatcttcacataaaatatagacagaagcattctcagaaactactttgttatgtgtgcattcaactca
cagttttgaaccttccttttgatagagcagttttgaacctctcttcttgtagaatctgaaagtggatatttggactgctttgaggtcttcgttggaaacg
ggaatatcttcacatgaaactagacagaagcattctcagaaacttctttgcgatgtgtgcattcaactcacatagttgaacataccttttcatagaccgg
tttccaaacactctttttgtagaatctgcaggcggaaatttggactgctttgaggcctcctttgcgaacgggaatatcttcacatAAAATCTAGACTGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAATCTAGACTGAAGgcattctcggaaacttctttgttatgtgtgcattcaactcacagagttgaaccttccttttgatagagcagttttgaaatgctcc
ttttgtagaatctgcaagtggatatttggagcactttggggcttacggtagaaacgggaattcttcacataaaaactagacggaagcattctcagaaact
tctttgttatttgtgcattcatctcacggagttgaacctttctgttgatagagcagttttgatgcactgtttttgtacaatctgcaagtggatattttga
ctgctttgaggccttctttgaaaatgggaatttcttcctataaactctagacagaagcattctcaggaacttctttgttatgtgtgcattccactcacag
Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
961 chr11 49381673 49381992 RIP_Alu_chr11_049_01 0 + pAlu11-49456606|Yb8AC1565|54444 TTAATTTGGTTGGAGGCTGG TCCCCACTGTAAAGCAAAGC SINE Alu Yb8 agagctcaaatttttcagccaatttatttttaaatgcatttataaactatcagaatgctatgctgcagaccttttagtagttatagaatcttgtgactga
aaggtacctcataaaaacctgtgtgtcttaactaccttcccagagatgtagggctcagatgccagacccagagaggtttctaggagcctggattgagtag
gtctgcctttaatatgccaccaagggacagagaaagtatggtgttcaaagatgacactggaaacaaaagtagtcaaactgagatactatttgaaaatcct
aagcagacaagcacaactaggtataaggaaactgaagagactgggaagacctggacaaagtaaattaatttggttggaggctggAAGAAATAATGGTGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAATAATGGTGAAaacccctgaaataatgtggaagagtaatagatacttttaatagagcatggttagctttgctttac
agtggggagagttggtaagaaccctgagccaatttaaataaatataatatagacagactgcttaaattttctctatagattccaaatcaaattagccacc
caatccagtatgtgaagacttcctgtggttaccacttattattgtccaaaggtgtccattttgattttgtaactcggagtattaaacaatgtttcccctt
attgaactaaaatgggcccactataacttcttcctactggtcctagtcttttatgctatgcatagccataatacaaatgcaatatcaattgtactttttt
tggaaatcaatagggcccc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 60 443 110 NA intergenic
1020 chr11 57133181 57133182 RIP_Alu_chr11_057_03 0 + C1NH NA NA SINE Alu Yc1 gaactcctgacctcaagtgctcgtccgtcttcggcctcctaaagtgctggcattacaggcgtgagccactgcacccagcctgagtttttttttttttttt
aagccaaaggaggaggagtagttttgtgcacaaaagccactatttagagttccttaggttttaaacagataattaatttaatgtactaacaaatgcaaaa
ttaaaattttacttatgccttttaattttaagctgaacttgctacattaagagtagggtgatttggctgggcgcagtggctcatgcctataatcccagca
ctttaggaggctgaggcaggtggatcacttgaagctaagagtttgagaccagcctggccaacatggtggaattctgtctctactAAAAATACAAAAATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAAT
GGCGTGAACCCGGGAGGCGGACGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAATTAgccaggcatggtggcacatgtctgtaatcccagctactcaggatgctaaggcacaga
atcacttgaacctgggaggcagaggttacagtgagccaaaatcgcgccactgcactccaacctgggcaacacagcaagactctgtctcaaaacacaaaaa
aagaataggctgggtacagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtgaatcacctgaggtcaggagttcgagaccagcttgg
ccaacattgtgaaaccccatctccattaaaaatacaaaaaataagccgggtgtgatggtgcacgcctgtaatcccagatacttgtgaggctgggacagaa
gaatcgcttgaacccgggaggcgaagg Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.PMID: 11700292.
- Stoppa-Lyonnet D, Carter PE, Meo T, Tosi M.Clusters of intragenic Alu repeats predispose the human C1 inhibitor locus to deleterious rearrangements.Proc Natl Acad Sci U S A. 1990 Feb;87(4):1551-5.PMID: 2154751.
Direct sequencing NA 0 0 0 C1 inhibitor deficiency intron
1025 chr11 57719419 57719733 RIP_Alu_chr11_057_01 0 - pAlu11-58213623 NA NA SINE Alu Yb9 attgaaaccaatatatctatatctatatctatatagatatagatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcccatgatcattgaagc
attattcgtagtagctgagatgtggaaataacctaaatgtccactgacatatgaagagatagagaaaatgtggtacagttagccctctgcctctgtgggt
tccacagtcatggattcaaccaatcttggatcaaaatagttgaaaaacaattgtgtctgtactgaacgtgtatagacttctttcttgtcattatttttta
aacaatacagtataacaactatttaaatagcacttatgaatagcatttacattgtattagggattataagtaatctagagatcatttAAAGTATACAAGA
AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGTATACAAGAAGagatgtgcataggtttatatgcaaatattacatcattttatatcagggacttgagcatctgcagatttggg
tatttgtggaaggtcctggaacaaatcccctgatggacactgagggatgactgtatatattagaatattactcatcttttaaaggaaatcttaccatatg
caactacacagatgaaccttgaaaacattatgctaagtgaaataagtcagtcacagaaagaaaaatactacatgatttcactttaaggtatctaaaatag
tcaaactcataaaagcaaaaatagaatggtggttgccaggggcttggggccaggaagaatgaggaattgtagttcaataggtataaagttccagttatgc
aagatgaataaattct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1027 chr11 57977197 57977510 RIP_Alu_chr11_057_02 0 - pAlu11-58471402 NA NA SINE Alu Yb7 caaatcaaaaccacaatgagataccatctcacaccatttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaatag
gaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcaattcctcagggatctagaacttgaaataccatttga
cccagccatcccattactgggtatatacccgaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaata
gcaaagacttggaaccaacccaaatgtccaacaatgatatcagtttattttaagcagataacaacttaactttgattgcatataaaAATACTACACTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAATACTACACTTTTatccccccccctccacattttaggtttatgtcataatttatttctttttatattgtgtatctttttataaatt
atcgtagctatagttattgatatagttttgtgtcttaacttttatactagagatataattgatgtccacatcatcattacaatatgatgttgtacttact
tttaccatgagtttttactttcatatgcttttatgctactaattaggatccttttatttcagcttgaagaactccctttatcattttatgtaagacaggt
ctagtatttatgaactcccttaatttttgtttgtttgggaaagttatctccttcatttctaaaggacaactttgccaggcagaatattcttcattggcag
gtttttgttcttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1029 chr11 58219020 58219323 RIP_Alu_chr11_058_01 0 + Yb8AC1551 TTTGGGGAATCCTAATGCAA TGCTGCTAAGATGAAGCAAAA SINE Alu Yb8 gacatcagtcttctcaggaccttggattggaacttacaccattggctttccttgtttggctttcctgtttccagcttgctaactgcagatcttggaaatt
ttcggcttccatagttacatgagccaattctttattatgaatctatacatacctacatctatatctttatgatgatataaataaagacatagatgtaggt
atgtatagatttataataaagaattatctttcttctattgctttttttcctttggggaatcctaatgcaatagataactggttgaataaattctggcaca
tacttatgatgggatataaaaagaaaaggaaatgagaaatatgtttactgttaagacatatttcagggatatatgtttcaggaacAAAACAAGTACAGAG
GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAACAAGTACAGAGcagtgtgtatattttgcttcatcttagcagcatattaaaaagtggaaggataaaccaaaactcataaaaatgcttaatatag
ggggagggagaataaggataaaagcgataggtataagtgctagatttctttggctataacttgtcttatagatttgactttgaaacaatataaatgtttt
tcttaaatataaaataaaattagatgagatattaatgggtataaaaataccattagaaagaagaagatctagtgttcagaggcacaatagggtaactata
gttaacaacaattcattgtatattttaaaacacataagaaaagtagaactcggatgttcctaacacaaagaaatgataaatggttgaggtgatggatatc
cca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 50 500 182 NA intergenic
1031 chr11 58565878 58566193 RIP_Alu_chr11_058_02 0 + pAlu11-59060085 NA NA SINE Alu Yb7 cataaaattcggctttgggaaattcacagggatttttgtgttctacccatttgtttcatttttcttgtgtacctagataggaaaattcattggttaagtt
aatcaaaagaacctgagagtaaagtcagtattttatgtaaaactggaatccttaatttctgaaaaactgagttctttctggcttatacattaggactgga
aggcagagaagtcttacacaaatggcaaaatcttactaaagataacttagagtggaacattccaaatgaaaaacaatgcattgaactacatttaaaaatg
agggctctcagtaaagtcccttttggctaagaaccggtttggcactatagaatgtcaactgttatactctttggcacatttgtAAGAATTCCAAGTGTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAATTCCAAGTGTTAtttcaaaggaaatttacagatatgtttccaaattttctatgcttttttcttatttttgtaatgaaact
gggaaaaatttcaaaatggttatagatctgaaatatttggccctaagaaactaaagaaaatctttgccaactcctgctctgaggtttccagtcacaactg
ttcttagatatttcctattccagaagaaagaagactcttcaggcatctgatgaccaaaataaaagaaacattatgatggtggtggtggagtgttctgcta
caggcatgtgggaggctcacagaactcttaatattcacttttaattcattccaccagagaggaaatgcatgggttttggataggactctgtcatttatcc
ctgtaagaacttgag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1049 chr11 60864376 60864701 RIP_Alu_chr11_060_01 0 - pAlu11-61358592 NA NA SINE Alu Yb7 ccaatttttaccaagcatctagtatatgctgaaaaggaaaaaaggcgactaagtcacagtctccaccttcaagaactcacagcctggggagaggctaggg
aagcagatacccataaattgaaaatttatgtgaggtggtaattacagtgatggagtccacactaggactggctgccaaccagctcagggtagtggggaga
tggagatcagggagagccttccaggtggggagacatcagagctgggcctctgtagaatggtaggagttagccaggccaaaaggaggctggacaaggaaag
aattttccaggccacagatactgcataagcaaagccagagatgatccatagcctggcaggtacaggagctggcgtgaagagaccatAAGAGGAAGGCAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGAAGGCAGGGgatggctgggcgcggtggctcacgctcgtcatcccagcactttgggaggccgaggcgggc
agatcacttgaggtcaggagttcgaggccagcctggccaacatggtgaaaccacatctctactaaaaatacaaaaattagccgggcgtggtggcaggcgc
cttgtaatcccagctactcgggaggctgaggaaggagaatcacttaaacctgggcagcggagactgcagtgagccaagatcgcgccactgcattccagcc
tgggcaacagagtgagactctgcctcaaaaaataaataaataaataaaaaataaataaaagaaaataaaaaaaagaggaaggcagggatgatgggagatg
aaggtggggagtcagggagctatggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1049 chr11 60901788 60901789 RIP_Alu_chr11_060_02 0 - pAlu11-61396087 NA NA SINE Alu Yx tattcaacatcagctgggtgtcctacaattcgattcaattctgacactacatggagttagcatcagagcccacaggttaagtaaggctcagtcccacaag
aatgtccccacttcaaatgctaatcgcaagtctggctctctggtacttctgacccactggctatgaatcagagattcccacaaccctctccttgggttca
gtaatttgttaggatggctcatagaactcatgaaaacagtttacttactagattgctggtttattataaaaggaaagaactctagaatagccagatggaa
gacatgcacagggcaatgtatagaaaacagccaggaagcttccatgtcctccctggtgtagaccaaaagtaatattctaagtcccccaaAAGACTGAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGACTGAATGaaccctcctctcggccaaggggattccaaactaaacctgaaagactagttcaggtcatgattggaaggggtgtttggacatgcttcatt
atactgtcctccctttggaattcaggcacatctgaccagtgtgaaaggaaaataaatcttggatcgccaagtgagtgtgaacccagaaaatttgagacag
gtctcagttaatttagaaagtgtattttgccaggttgagaacacgtgcctgtaacaacacagcctcaggaggtcctgacaatatgtgctcaaggtggtca
gagcacagtttggttttatacattttagggagacatgagacatcaatcagtatgtgtaagatgtacattggtttggtccagaaaggtgggactactctaa
Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1055 chr11 61646897 61646970 RIP_Alu_chr11_061_01 0 - 12975 NA NA SINE Alu Ya5/8 agtgtaactgtaaccccacttcctgaaatctcaggagtaatgttaaaaatccaaacccatcaaaggccagggtgttacggtatttggctcatgaatcgaa
aagcctaatcatttcaatttaatctttacaagtagaacaagatccaaacatgggacgttttcttatttttctttgcttttgtggttgtaatgcccttttg
gttttctgagcaagctgaatacatctgataaatactaccattggacaaaggatctaaacattgagatgttttactaaatcaaggtttcaagttggcacaa
tgtttttactaagtcatatttcaattagttcatctttccaatatggaggcggggggggaaagacaaggactaatatgtcctatAAAGAATCTCTGGCCGG
CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAATCTCTGGCCGGgcgcggtggc
tcacgcctgcaatcctagcactttgggaggccgaggcgggtggattgcctgagctcaggagttcgagaccagcctgggcaacacagtggaaccctgtctc
tactaaaatacaaaaaaaaattagccgggcgtggtggcttgcacctgtaatcccagcgactcgggaggctgagacaggagaatcgcttgaacccgggagg
cagaggttgcagtgggccgagatcgcgccattgcactccagcctgggccacaaaaagcaaaaaactccgtctcaaaaaaaaaatctctgccgcttttgag
aagtaaaaacaaaacgccttgtgaatggcaacggagtgtgcgtttatctagagccttctgtcatctcttgggc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1057 chr11 61946505 61946506 RIP_Alu_chr11_061_02 0 + Ya5NBC135 AATTAAGCTCATGGTAACCAGCAC GACTCTCCTCTCTGGATTAGAAACAG SINE Alu Ya5 agactcgggcaatccacaaatcttacactctagtccatcgatgaaaaggctgctatctctcgctgatgggcctggctgtttgcatctgggcagacccagc
cagccagagggctagccagcttggaaaggggcctggagacatgtgccttctctcctctgagttgcagcttctgcagagatctgcccgagctttcagcgtg
tcatcgaaaccctcctcatggacacaccctccagttatgaggctgccatggaacttttcagccctgatcaagacatgagggaggcaggggctcagctgaa
gaagctggtggacaccctcccccaaaagcccagagaaagcatcattaagctcatggtaaccagcacctttcacgtcacactggttAGAAGTGGCTTCCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGCAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAACAGAAGTGGCTTCCCCaagtggggctgcaggattgccccagttttcagacctgtttctaatccagagaggagagtcacagtgccactgtccccaggc
aggcagcacagtgatctttctagacatctccttcttttttttttttttttttttgagacagagtctcgctctgtcgcccagactagggtgcaatagcacg
atcttggcttactgcaacctccacctcccaggttcaagcgatctccggcctcagcctcttgagtagctgggattacaggcacccaccatcatgccgagct
aatttctgtatttttgtagagatggggtttcaccgtgtttgccaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcccaaagtg
ctgg Other - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening NA 60 436 117 NA intron
1082 chr11 65260064 65260065 RIP_Alu_chr11_065_01 0 - pAlu11-65753620 NA NA SINE Alu Yc1 aaaagaagtcagaccatgacaggaaacagggggccaaacatgcctcactgtgccaccccttagaatttaggctaggcacaaaggcccttcaaaaattata
ataacaaagtacttccctttcccacataggaaagaaatagctcctctgttcaacctgaacacctagtcttacaaaaaactttttgttaaaaaggatcccc
agaggatcaattacaacccaaatggaagagcccctatcaggtattgttaagtaccttccctgctgttaaacttcagggaatcactagttgggtacacctg
tccaagattaaatctgtttcttatgaatccctgacggcataagaggaggacaccatgatttacacctgtgagctcctataagacttaAAGGTGTTGTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGGTGTTGTTTCacaaacacaaagataaaaaacatgatgccatgggcatagatgcattaattttctcatcctccaaattataattttcctgttgacctc
ctacttaagtttatgtcttctagattccacataaagatgatgctggcacaaggtttcaacccatcccatcttatgacctgaaaaatgaaaatatcctgtt
ggaccccttagatcaggtatccagagattaccagaggctaggggcatgggagagtgggaaatgggaagatattgctcaaaaggtacaaagtttcagttag
acaggtatattagagttctctaaagggacagaactaataggatagatgtatatatgaaggggagtttattgaggagtaatgattcacatgatcacaaggt
Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1130 chr11 71539257 71539560 RIP_Alu_chr11_071_01 0 - pAlu11-72084202 NA NA SINE Alu Yb7 aggcgtgagccaccgtgcccacccccacatttccttttcaattgtggcttaaatagtggctgtcctaagacttctgtcaaccacagacaattgttttctt
attttgatcctcttcaaaaggtggtttataatcaactataggattttgacaggttctcttgaatgcaggtttctgataagtttggagattgtgacgtcag
aatagaggaaaaactttcaggactcatggacagctgaaatgttcatgacgattaaacaggacaggagttaactgcatggaatgaacaaatagaagactga
agaaatgtttttgactttgcttaaaatgctgctgaaactttgttttgttttcagagtcaggaaaaattttgagctatttacaccttttAACAATTCAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAACAATTCAGTAaagtatacttctggcaacatatttggagcatatttgtttttttctacctgatttttccagaattaggaaactaggtgtgagtatt
cttaacttatagcaatatagttatttgcataagtgcaataagaatctgtttcttggccgggcgcagtggctcacgcctgtaatcccaacactttgggagg
ctgaggtgggtggatcacctgaggacaggagttcaagaccagcctggccaacatggcaaaaccctgtctctactaaaaataaataaataaaaattagctg
ggtgtggtggtgtgtgcctgtaatctcagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagatcgtg
cca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1148 chr11 73822719 73823054 RIP_Alu_chr11_073_01 0 + pAlu11-74367669 NA NA SINE Alu Yb7 aaatattttatttatttatttattttatttttgagacagagtctggctctgttgcccaggctggaatgtagtagcacaatctgggctatctggaacctct
gcctcctgggttcaagatattctcctgcttcagcctcctgagtagctgggatcagattaacaagtattttaaaagattgtctcctaatcttaaatactgg
ctaaaatgctgagcaacaggaactctcatacactactgggtagaagtataagagaatcaatttattaaactgtttggtaataacttccaaaggcaaacat
aggcagaccctatgaccaagcaatttcacttctaggtgtatacccaacagaaatgcatataaaaacatcattattggaaatagctcaaAAGTGGAAACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGGAAACACcccagatgtccatcaacagaagaacagataaataagtttgtagagtatttcta
aaacaaaatacttagcaatgaaaactaatgaaccacagctgtacatgaaaatatggttaaatctctgatatggttaggctttgtgtccacccaaatctca
tcttgaattataatccccaggtgttgagggagagatccggtgggaggtaattggatcttgggggcggttttcccccatgcctttctcgtgatagtgagtg
aattctcacgagagctgatggttttataaggggctcttctgctttccctctctgacttgctctctctcctgctgccttgtgaagaaggtgcttgcttccc
cttctgccgtggctgtaagtttcctgcggcctccc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1204 chr11 81233831 81234186 RIP_Alu_chr11_081_01 0 - 3136 NA NA SINE Alu Ya5 attattttataatatatttacatttacaagcattcttaaatgtagatgaaagtggagaataaatgcatggacaaaaattatcagtcgttggtgtgtatgt
acatacttcagtcttattgatttgactaataatgtttggtcccttaacatattcaaatcagctaagtgtagagtcccagctacagatatagattgaatat
gtattcaattaaaaatcccagtaatattcaatggcatctcatttttttcagttagtactgatggcagatagacaaaaagtttattgcaagtttaatgtac
atgaaaaagcggtttgaattacagtggcttactgtcaaagtgtgtcattagccaatgtaaaaccatatctagcataggtagatcAAAAATATATGAACCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATAAAAATATATGAACCTgtagtaaacatgacatttccataatcatc
attggcatagtagccaattaagctaattttctttgcatctaatctaaccagtatgccgtaaatgttttacagagaaggaaatgttttaaatttcccattc
tctgaatctatttctgtgaattagcaagaatccctcacttctataggtaataccaagctagaggcacacaaattatttttagcatcttggccccatgcac
tattcatctccaaatagtttaatagcttttataagtttgtcatatcatttactaccaagggtgaagcagaatacatccttaaaacagaactgtttccata
aaactctgtataccagcatttcagaaaaactctgggccacaactctttttcaagt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1212 chr11 82271186 82271484 RIP_Alu_chr11_082_01 0 - Ya5ac2084 TCATGGAGTTGAGGCCTTTT CACTACCTGGGAGGACCAAA SINE Alu Ya5 ctactctggatcgcattgctttatttatttatatgttggtatcctgttagactgtgagcagcctgagtgctaggactccacccatcagtgtatctcagtg
tgtgccttcatcagctcttcagacaaataactggctcaagctgaagttattcttctaccattagtacttggttttgtcaacagtctgccagtattgtact
accaatatggcatagacactggccagtgggaacagaagctagtcatggagttgaggccttttgaagtatcatcgttctttaggtctggagatctaaaaaa
gggtctgtggcagtagggctgtgtgtgtgtgtgtgtgtgttgcacaggtagtttttctccaactcatatggaaatatttcagtattttAAGAACTGGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAACTGGCTCagtatcagctttggtcctcccaggtagtgagtgcctacagaatgggattctgtctgtactgcttagtgtccctaatatggatatctcagc
acaactcaggtgtccaaaacaggtttaacttctatagcaaatgttaatgttattacataacacttctttttaaaacttctctgaatttttcacattacta
tgaatactactgcagttgaccctagaacaacatgggtttgaactgcacgtgtccacttataaacgttttttttcaatacatctcttctgtctcccctttc
acctcctccacttcttctgcctctgccacccctgagacagcaagaccaacccctcctctttctcctcctcctgttcagccttctcaaagtgaagatga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 497 180 NA intron
1253 chr11 87558209 87558509 RIP_Alu_chr11_087_01 0 - Yd6JX455 AACACATCTTGGTTTAAGTCACCA AAGTTGAGCAAGTCTTCCAGAAA SINE Alu Yd6 aattacctctgactagctccctacaacaacatgtgggaatttaagatgagatttgtgtggggacacagctaaatcacatcagggccctgggggtatacat
tttccaatagtttttctaggaagctgctgtgacattattatcaaaaattgataaagaaagtttaattgattaagctgtatatttatgttttgggaaccta
gcactttttaaaaagtagataaatagatctaagtatctcttcaaaatcaagttgctaattaaaagttttcaatgaaagactttgtaaaccaagttgagca
agtcttccagaaagtagaatacagagacaaaaagaatgaaacattgtttaaaaagtcttaatggtgtcctcgcgttagactttAAAATTTTGAGAGATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT
CTACTAAAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAG
GCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAATTTTGAGAGATTGagaacaaataaaaagagagagaaaattatcaaagaaataatgcaagaatgcttctgataaatgaaaagcatctgtgtccagat
gaaagagaccgcttggtgacttaaaccaagatgtgttaactgtaaaatttcaaaatttcaagaataaataaaaaataaatagtaaatccttaaagatttt
caagataattacatattaatttcattgattttaaaaccaatccatatatatcctagataatttagaaaagtataaagaagaaaaatgtttgttctagtta
tatgtataatcatgtacatatatttataaaatctggataattgatatatgtatgacatatatatgtaattttatatttagcttttttccaaataatacaa
UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
Candidate screening NA 60 547 230 NA intergenic
1257 chr11 88188746 88189383 RIP_Alu_chr11_088_01 0 + Yb8NBC409 TCAAAACTTGCGGATTTTCC TGCTGAGCTATACTGGTGCAA SINE Alu Yb8 ggcccataattttgatgtatagaaggttcaagattggtcatctgcatctggtcagagtctcaggctgatttcacttattgtggaaaataacagaagggaa
gcttgtatgtgcagagatcacaaggtgatagaggaaacaaagaaagaggggaggtgttagcctctttttaacaaccactgcttgtgggaactaacagagt
gagaactcactcatctctgacagtgggcattaatctattcatgaggaatcggttcccatacccacatacctgtcattaggccccacctccaacattgaaa
tcaaatttcaacattaaatgtttgggggacaagcatgcaaaccagagaaaaaggtcacaaatcagaggcttcagcccctgccttAAGAAATTGGAAACAG
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAGAAATTGGAAACAGGCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTCTGGGAGGCCTAGGCAGGTGGATCATGAGATTAGGAAT
TTGAGACCAGCCTGGCCAACATAGTGAAGCCCCATCTCTACTAAAAATACAAAAATTAGCCAGACATGGTGGCACGTGCCTGTAGTCCCAGCTACTCAGG
AGGCTAAGGCAGGAGAATTACTTGAACCTGGGAGGCAGAGGTTGTGGTGAGCCGAGATCATGCCACTGCACTCCAGCGTGGGCAACAGAGCAAGACTCCA
TCTCAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAAGAAATTGGAAACAGaacaaatgaagataaaaataagcagaaaatagcaaataaaaatcaaagca
aaaaatcaatgaaagagaacacagaaaaacaatttaaaaaatcagtgaatcaaaaaagctagttatttgagaaaaatcaataaaactgataaatctctat
ccagattggtccaaaaaaaaaaaaaaaaggaaagaaaaggcacgaataaccaatatgagtttttagagaagttatattgctacaaattatataatattaa
atggatcataaaaaaacagtgtaaacaattttatgcccacaattttgacaatttaaataaaatagaaaagttccttcataattaattctggaagaaacag
ataactctaacagatctatctatctgtctgtcgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 61 731 406 NA intron
1268 chr11 89572169 89572500 RIP_Alu_chr11_089_01 0 + Ya5ac2095|B65 CTAAAAGGGACACCAGCCCT TGAGTTATTTCCCCTCTCCG SINE Alu Ya5 ggcaagccatccaacaccaccagattaagttgttaagatacctgggcagtagggaagcagtcagggataattaacaacaacaacaaaaaacctatcaaac
aatcaaaacaaatgaaacagaaaaccctattaacaaaacctaaaaacaagctgggcttaatagcttgcatttcaaaactgaggccatggaattatactgg
tgaaaacaaagtaaataacaaatatgaatgccaagtcaaaataatttgccataaaagatgaacaacaaaaaaaaaccctgttaatgttcaaatagataat
ttaaaagtacctgactgctaaaaacaaaatttacagagtacatacccatatatcctaaaagggacaccagccctcataaatgagcttttaagAGTTTACT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AATAAATAAATAAAAAAAATAAAAAAAAAAAAGTTTACTtactgtgagtatacgcatgacataaattttcaggctgaggaataactgattaaaaaaaaaa
aaaaaattgggagttcggagaggggaaataactcaaagtccctttaaaatatttgcaagaactctttaagtttctctacactttgatggttgaataattt
tctgaagaaaattcttaattaaatccttgcataaaatataaattagaataaagtaaaatcattacagtcctttgccagtatagttacaccaagaagttac
atcttcaacctataaacatttgttgattcctaatcatatcttaattgtttataaattactggcttaaattattaccaaaaaagtaggacaagtcttaaga
ccttgaagaattccactaaaaacagatggta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening|Library screen NA 60 481 142 NA intergenic
1286 chr11 91885654 91885949 RIP_Alu_chr11_091_01 0 + 14987 NA NA SINE Alu Yc1 aaaggttaaagcaaaggggactttcttatcatgctagctaaaactgccctgttttatatctcaaaaaaaaatatatataaatatatataaattatatttt
aaatttatatatataaatatatataaattatattttaaatttttatatattaaatatgttttaatgtataatattaaaatatatatatttaaaatatata
tatatcttgatttcttggaaggtcagataaacaacttagtgttggcttggtggcatggaacttaacatgagtgactccattttggtttgatcttttgggc
ctggtgcaggaactcagtccaaaccagtgactttctgcaaattgtatttaacacactaaaatgtatttgaagcattataaacatctaagttAAGATTATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAGAT
TATCtccacccacaatttctctactaatctctgttcatgccatttcaatttgtttcagctgtgtccatatatttcagactgacagcaattacagatatga
ctataggagtgagtggagtgaccctggttgggcctatgaggataaaatgcccattcttccttaactgttaccacacactgtgctgaacaatgatttctgt
gaaggcattaagaatcttatacaggtccaaggatgaatagaacaagaaagaaaaatagtatctgtatgatcttgctagaggcaggcatggggttggctaa
aagtggttatggagcccatgaaagaatttcatgtgctctcagaaataaatctagtttaaagagtttgactcttgaagaaataagcaatttaaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1288 chr11 92248126 92248127 RIP_Alu_chr11_092_02 0 + 15668|pAlu11-92793021 NA NA SINE Alu Yc1 tttttccttcataggatcactgtgatccttcagagaatgaaagtgatttaaaaacactaaagcattagattacttagtatcattatggctactaatgaat
gataataatcattattgatatttttgaaagtattaataatagggctaataccaggataatgagattataaataatattttgtgagaacaggttaattttc
ataaacaagccttttcacagaggctgaacaatagatatcactcttctttcactaaaaaaaaaatctgaccacttttaaaaaattccaattgcttttccct
ctcattgtgttaacataaaactcctccgaatttaaagttctaaaagcaagacttcttccaaaaggctctgcctcctatgccccaagAAGATCCTAGACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGATCCTAGACAGttgctgctctttctgataaacagaatgggtaatgaagtgtggttgttagaaatacagttcaggactgcaggagccagacttcctggg
ttcaaatccacacccactttgtgaccatgacaaagcaatcagcttctctgtacctcagctgcctcttctatagcgtgcttctaaatggagtttttctgtc
tttgtatccccagtgcttgccacagtccctattccaggggtgtgctggtaaaccagttctctaaaaataaaagccctgatttgtagcatttgctgatgac
tgcagtgtaagtacttccaccatggctgatgtcaggctacccgtggtttaacaactgacctgccaaattcctgaatatttaacagttacctcttgggac Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1291 chr11 92615999 92616332 RIP_Alu_chr11_092_01 0 + Ya5ac2102 CCTGCTATTCCTTTCCTTTAGTG GTGACTTCTAGCCACAAAAATGG SINE Alu Ya5 tttgtctttttttggattattttttatcattctatttttccttctactagtttagaatatatacctgctattcctttcctttagtggttccttaaattat
aacattatgcttaagttatcaaatccccaaattaatcaatactttgctgcaccatggacaatgttagaaccttagaacatttaactcaattttctcaccc
aatcaatttacatgttattattgtcatgtattttaatgtatgagtactatttgaatatactcgtttatcactttatttgttcttaatttcttcttgcttc
tcagaccttccatttgatattgcttctcttctgcctgaagtatattgtttagaatttcctttcatgagagtctggttgtgttAAACACTAACAGATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTAACAGATTTTCttagttaaaaatatctgttttctcttcattttaaaaaccaaatattaac
tgggtataatatctagattggaagttattttcaacacattgaagaaattctgtctcccatttttgtggctagaagtcaccttttggtccaattgtttctc
ttttaaaggtaatactttatctctgtctgcttttaagattttttttcctatctctggtactccattgtttcagtgtgatttgtctatgatgaaatttttt
ttatctttctcgagattgtttatgcttcttgcaagtgtgtattattttctttagttttaaaaaataactctagctattaactctttaaatattgctcatg
gccccgctttctggctcctttttctaggacttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 0 0 NA intergenic
1292 chr11 92742463 92742766 RIP_Alu_chr11_092_03 0 + pAlu11-93287245 NA NA SINE Alu Ye5 cccatttcataatgctgtcactttggggtttaggcttgacatatgtatttgttgtgggggacacaaacattcagtccttaatagtcactaaataagtcca
agccccaccctctaaaaaaacaagaggagaaatttggcaactgagtgaatgaaggaaaaaatatttcgtgtcaagaaatagaaagaaagtagtggcaaat
gcaaaaaaaaaaaaaagttgtttgaaattcccttattagtaataagtatttgttataagacagactttttacatttttaacaataagtgacaaattctgt
attttcctagcaaaaattagagatggtaaaaaatccaacatgaatgatttgacaccttttcttttgtttgttttccctaataggtAAAGAATGGATTTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGAATGGATTTACtttttttttctcagaatgaagatgtacaaatgaaagaagccttatttgctgtactttaaaatgaataacatttttaaatatg
tttgtctccccactttttaaaaggaatttagagcaaagtcaagagaatgggacaagcaagagatattatatcagactcatctgatttctttagatgctca
acaaaaattattatctgagaagtgtaatcagtttcaggtaagttatctaatactattctctaaatcaaaagcagaagttaaatattggtatctttaccat
tcaccagtaatctatttacaaacagacatgccaactaagaaaaaacgagagtaggtccaaaggtgggtacagtcacaagtgcatagaatatctgttaatg
gtg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1318 chr11 96119983 96120296 RIP_Alu_chr11_096_02 0 - 13787|pAlu11-96648755 NA NA SINE Alu Ya4 gaggctatccttactaagactgaagatcacagaaagatagtattagaaaaaaatggatacataaaatattccttggtagtgagtgttccttccataaaaa
ataataactttatggttgttttaaacagtagttgcaattggtatctttgctttcagaaatgtctaataggaaaaataaccccacagaatttggaaagatg
gaacaatatcttggtaacgaagtagaagttagaataagagagatgatgtgttttgtaataagaatcacaaagagacatggtatcctcatccaattgtcct
aatacttactaagcattgttggtgatttgagaaaaactgaaaatttggaaaaattatattcagattcaacttatttggaatcaattAAAGTGAATAATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGG
TGAAAACTTATCTCTATTAAAAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAGTGAATAATTCtgggcacccacgaagaatcagacgaagttaaatagcataagtatgtgcatattcgttaagaaaaataaaaatt
ttcaaaagatatatagactaagaaattttgactaaaagaaagataacagcagaagttgaagaatttctaggcacagaaagtcaagagtacaggagactca
gtggtacttattagcaagcacattatgaaaatggcttacaaagtggagagagactgttgagtccagaaggagcgataaattaaaacaatagccaaaaagt
gctgtgagtgtagaacatcgctattcatttgtagtgagtaagtagtagaagtaagaggcatagaagtggtcataaaaagcatgataatagagcttaaagg
ttgagtgattcta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1322 chr11 96607005 96607321 RIP_Alu_chr11_096_01 0 + Ya5ac2105 TGTGATTTACTTCTTGAGTTTTCCT AACAGAAATTGAATGGACACCC SINE Alu Ya5 gaaactgtcacatttataaggtattattaagaattcttgtttcttagagactttagttcaaatcaatccattaaaaggattggccagttgcttggtggct
gatgtaaattaaatgctatttcaatgtaaaatggcagctcttaaacagatcttattaagtgtatctatgataatgaatttcttctgaccaaatttagcag
ccttttctctcttaaacttttaaaacctcagagtagtctcgacaaatatggtttttttttttttttactgtgatttacttcttgagttttcctaagagtt
ctctgaaactttattttttctagtgtaagtttctgaaacaaaatcactgagatctctatttttgtttttctatctactttcattttAAGAGTTTATTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAGTTTATTATTttacttaatttctaacttagggtgtccattcaatttctgttgtacaatcaataaagcatcaattcaaataatct
tttcattagatttgaagttaaattaataataattaaaataccctgttattttacagttaacaaagcactttcttgtatgttacataatactataaatctg
tatactagatgtgattctcacagatttggactgggtatgtgacttgtttgtcttaagattacttgtggagcttaggcttttgcattttgactgtcagttc
catattttttccaaattcaacatattaaagtacttaagctcatattccatgccagaaactatgctagcagctgaactatgaaatattttggtcccaaact
catttgagtttg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 499 174 NA intergenic
1338 chr11 98781546 98781873 RIP_Alu_chr11_098_01 0 + pAlu11-99310323 NA NA SINE Alu Yb7 ttgagttaaatctgcttggtgttttataaccttgcacttgactattggtatctctagatttaggaagttattatccctttgactaacattctatccctct
ttttctaccttctctttgaagacagtaactcttaggtttgcctttttgaggttattttctagatcctatagctgtgcttcattgttttagttatttattc
ttatctctcttctttgtgtattttcaagcaacctcttcaagctcactaattctttcttctgcttgatcgtttcttctattaaaggactctgatatattct
tcagtatgccaattgcatttttcacctacaggatttctgcttgatttttaaaaattatttcaatctctttgttaaatttacctgatagaattctGAATTC
CTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCtgaattcctttggtgtgttatctcgaatggcttggagtttcctcaacacagctattttgaattctcg
gtgtggaagctcacatatctctgtttctctaggattggtccctagtcctttatttagttcacttggtgaggttatgttttcctggcttgtcttgatactt
ctagatgtttacctgtttctacgcattggagagttagatatatattgtagtattcacaatctgggcttatttgcactcatccttcctgggaaggcctacc
agatattcaaaaaggcttgggaattgtgatctaatctgtatctgcttgaaggggcaccccaagcccaataatgctgtggttcttatagactcatagaggt
accaccttgatggtcttggataagagc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1354 chr11 100795220 100795527 RIP_Alu_chr11_100_01 0 + pAlu11-101323986 NA NA SINE Alu Yb7 tttttgtgttctgttgagttcttttcactaatattttataattttcattgtagagatttttaacctccttggttaaatgtattcccaagtattgtatttt
tgtagctattttaagtgtttttattttaaattttttcagctagttgattgttagtagagaaacgctactgttttttaatgttaacttcatatcttgcaac
tttactgaaattgcttatcgcttctaagagtcttttggtgaagttgttagatttttctctatagcagatcatctgtcatttgcaaagagggacaatttga
ctttcccttttccagtgtggatgccatttctttctttcccttgcctaattgttctgcctaagactttcagtaccacattgaatAAGAGTGGTGAAAGTAG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAGAGTGGTGAAAGTAGacatccttgtcttgctctagttcttacaggcaaaactttcagcttttcctcattcagtatgatgttagctgtgggt
ttgtcatatagggactttgtggtgatgaagtatgttctttttatacctaatttattgagaatttttatcatgaagggatgttgaatgttatcaaatgctt
tttctgcatctattgaaatgatcatatggtttttgtccttcattctgttgatgtgatgtgtcacctctatcaatttacatatgctgaaacatcctttgat
cccttcaatgaatcccactagattgtattgtattatcttttcattgtgcttttcaattgagtttgctagtattttgttggggatttttgcatctattttc
agcacgg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1363 chr11 101977068 101977372 RIP_Alu_chr11_101_01 0 - pAlu11-102505827 NA NA SINE Alu Ya5 gagaagaacaatggaaaagggaaagttaaagcaggtagaagcctcatggctgagagtataatatacagcattgttcacttagaaaaattcagaggatttg
ttgggaacacgatgtaaaacagggttagatgtatcagatttaaagcaatgacaattttcacggagtttcatagaaataagctagtgctcagggaagaggt
cacagttggaggcttcgtgggttttgaatctcccacataaaggagacatttaaagatgtggagatgaaaaacagctctgtagagagaatgaggagaaaga
aaaaaagtctaaagaatgagcctaggaaatagaagaaaaggatttaataacaaccagagagattcagcactccgaaaataataacgatAAGAATAGCCGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAATAGCCGAcacttcgtggtcatttgcaacgtgctatgtgttgtgctaagaattttacagatattcactcatttaatccatactgtcattgtc
ctcagctggaattataacttagttctgtttgacatcagagacaaaacccctgtggtgaaatcccaaataaatctgggaaaaaagggtgtattttttttaa
gtgatcaacagtggaaaatgttgccaaggtcaccagactgaggactgaagaaaagggactgagtggccaggatagtttggaatatagtcacagcagagca
gtgaggaagaaagccagatcatggaaaggggttaaagagcaaatggggccaggcgcaatggctcacacctgtaatcccagcactttgggagaggcggcga
gtgg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1367 chr11 102593154 102593300 RIP_Alu_chr11_102_01 0 - pAlu11-103121915|6899 NA NA SINE Alu Yb8 tatttcaaagagcagaagttttcattttgatgaaattcaatttatcaattttctttttctattttgatatcacatcaaacaagtctttgcctcaccaagg
tcataaagatgttctcctgtgttttcttctaagttttataatttcatgttctacactaagatccatcatccacactgtgtaaatttttgtgtaagttaaa
aggtaaaggttctgggctttttctctctctacctggatatctaaatatccagcaccatttttcaaaaagactatctttccccatttatttggcatttttg
tgtaaaatcaaccgaccacattccagtgatctctatgcctaatattacagtaatatcagattgccttatgattactgaaaagtgactcttGAAATCCTAA
GTCCCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAG
TCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAATCCTAActcccataactttgttgatttttcatgccacttactttttaatt
gagatatatacattagtctgatgaatattaaagttaattttcataaaagaggcattagattagtgcctagttgacaaggtaacagttaccaagagggaga
tggggaaacatatttgaggcatagtcagggaaataaaattgacagaatttaatgactcattacattaagggataaggtaacaaaagtctcagtataatat
aatttataagttctgtcttaaataattagtgtatattatagtaccataatctgaggaaagaaatacaggaaagaaaactcataagttcagttttgaacct
gtttcaaattgtaatgcccgagagacttccaagaagacatgtttaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1370 chr11 102916041 102916344 RIP_Alu_chr11_102_02 0 - Yd6JX456|20874|pAlu11-103444811 AAATGCTCAATGAAGGCTGTAAG AGTATCATCAACCCCTCAAACAA SINE Alu Yd8 acagctctgtcaaattgacacataaaattaaccatcccagctagccttcccatttgataagtgacttctggtaactaagctcttcagtctagtcaatgcc
atggctgcaattcttccattgcaagccctctgtaaatctgatttgtgattagaattggtgtagcaaactgtcagcatcaatattgtaattaggaagagct
aagagcccaggacttagagacatgcaaaagtctatggcaatggagagacaagcagaagagggagtccaggaccccagaaaaagaggaaattattgcagta
tcatcaacccctcaaacaagccaaattacacaaagggaagataatcttttcaagttctatagccacaattacattgacagagacAAGATTAAGAATTACA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC
GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGATTAAGAATTACAtgtagtatagaaatatactggtgaagatccaaacacaagaaacttggcatcctcttacagccttcattgagcatttgctta
atgtaaaaattatattgttgctttaaggagatttgtaagttactcacacaccatcattttatttctcaaggaatttcttttctccaattcaacaggacca
atagcactggtatgcctatatcagttgttaaatgatctgaatatcatgtttggcatgtggaaaaacactagtggggacattatctattcatttataatgt
gtcatgcaaataatgccccataccaaccacaccgagaggttgtgacttttatactcccttttaaagaggaaggtatgcaatgattctcatttttgttata
tta UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Trace comparison plus genotyping|Candidate screening|Genome comparison NA 60 499 186 NA intergenic
1374 chr11 103515693 103516036 RIP_Alu_chr11_103_01 0 + 14867 NA NA SINE Alu Yb8 aaacagctgaaaagtaaaatgagtaaagataacagacagttaatgggaaaagctgagcactaactgccccagtacaaattaactatctgataaacggtga
aagaacaggcttacatggatccaaactgaactagaaataggcttctgggacaacaatccgatcacaaacactaaagactaaagactaacacaaaagttac
gtgtagtagctactgctttcaagtagatgcagggtaacccagtgattttttactttaaacaacaaagactttactcacaacatcattggaatcaactgca
tatttccctgattcataaagaaaactcttccctagaaaccagcattaacactgcagacagtgacaacaccttgggttcttgtcatgtcttAATAAATAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGG
AGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGA
GACTCCGTCTCAAAAAAAAAAAAATAAATAAATAAATAAATAAAATAAATAACtgaacgagaaaaaccaaaggaaataccagtatagagaactattcagg
caagtgtgcaaattaaatcctaattaaaccatttgaatatcagaacaaatatagcacaaaattataatgccaattagcattttgttgatcagtcattacc
ataaaacaaagagcaaatataaccatgttgctttaataaggtcctaattaaagaaaaattactttagcacaaaatgcaaagaaacagcagattcacacat
aaacattccagcagagacaagttaaagagattgagctcacatgcaattacttagtgcatgaaaaacccgtaaatccaacaatcctctgtggccatcaaca
atcctctgttaaaacatgttcaaaaggtgcactcttttaaaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1388 chr11 105270731 105271034 RIP_Alu_chr11_105_01 0 - 1140 NA NA SINE Alu Yb8 tatctgtcttttatctatcttccatctatatatctacccatttatcacctttgttttatacctggctcccttttattgccactattttaggtaccttata
aaaatccacactcaataaaaagtgtaaaacagataatagcaagaagagagcaaaaagcctattaaggaagtgaattaataaagccataggtattagctca
gagaaaagtaaatcacatacacacacacacacacacacacacacacgcatgagctcgtagcttttgtaattgctttctttttgttttctcttagtattta
gtaaaggttcttttgcaaatgtgaatatgcttcaatttgctgagggaatgaaggagagtgttttgtttattttttggtgggaatAAAATATGTAGCAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAATATGTAGCAATAatcctgcagttagagtaagaagtaatgaggacttggagttgcttgtccttctgaatgcaccttggctatggttttgggatc
ttcagattatttgtttctttccttccctcttccctccctcctcctcctcctcctttttcttttatagtgaagtagattgtcttcctaaccaacatatgtg
cattgctgtttggctatctacgaaaaaatatatcagtctactggcaactgagcaaaaattgctgtcaagaggcccaggtatacgagctaacagctattat
atgctgagcttattatatgccaggcattgtgctaagcgtattacacagattattgatctagtttagttttcataacaaggttatgagatagatcctatta
ttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1390 chr11 105549791 105549792 RIP_Alu_chr11_105_02 0 + pAlu11-106078653 NA NA SINE Alu Ya5 aaagaatgcaaacatttgtgtctcacctatgtgttatctggaagctccctaccagctctgagttttcctgcctttgctgtaagttgtccctccttcccag
acggaaccaatgtacttcttatgtatatggattgatatctcatgtctccctaaaatgtgcaaaaccaagctgtgccttcaccaccttggacacattgtca
ggacctcctgaggctatctcacgggcacatcctcaaccttggcaaaataaactttctaaattaactgagacctgtctcaaactttctaggttcagaggag
catgaggcagggaatccatacacttgtctcccatcccattcctctgtatgcagatgtttgaaatgcttcttccccaacgccataAAGAAATAGCACTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAATAGCACGTGAacataaatttaatttcctcagcaaggccatttttatactttctgcagaaacggcacactcgtcagcagttttgccacaagagtac
actgaacaaaggagacagggtgatttataacctcacgtgtccaccctactgctgtgtccggtttccactggctggaacgggacctcacattctgtatttg
tcctgattggctagcaacttagaacgttttaaaagaggcaaaggcagaggagaactaaggaaggaggaagtaacttgtggaatgctgagaaaggtaaaaa
cgccttcaaataaggaagaggaacaggctatgacctaatgcctgcttggaccagtataggcatgccagggcaaatgtttaggctaaattgtgggagcta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1394 chr11 106101090 106101374 RIP_Alu_chr11_106_01 0 - pAlu11-106629868|6518 NA NA SINE Alu Ya5 ctgtcattttagtagtcactggagagtcaagcatttaattaaacatgcaaatgcctgtcactgactacttttaagctcataatttaccatttcaaacatt
tggctcaaagtactctgaaatattactaacctccatcaatgggaacaaatactttattaatattgtgataaaaagtaattacatattaaaatattaccat
atactatacatgatactctaccatggcttcatttttgttttgataataactttacgtgattaaattaacttttaaaaatatatttttaaattgaactatt
tggtataattctgataattttagaatatgtatactctcctaaatatacaccatgaaaataaatatcacagttagaattttagccaatAAGAATTTATGTC
GCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCCTCCAGTGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTTATGTCaat
aagaagatacatagaaatatcataaatatctgagttgttctctaccaaaataaaggatttcttaaataattcagtctgcaatcctaattatttctgcaca
gtgtaattaaatttctattgtgaaaattaatattcttaaaaagtaataacatcaattgttgcaggcttctttttaataaacatctacataaggtgtctgt
atacttggagatatgcttatctgagtaggagaataagatttggtggtaaagctaatctagtaaatgaaatcaaatgagataatagatgcgaagggcttga
cacagagtgttgcacactctaagtgctcagtaaaatgccagagatgatgaggatagtgatgctcacatctgtattgtcaggtta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1437 chr11 111701655 111701656 RIP_Alu_chr11_111_01 0 - pAlu11-6101314 NA NA SINE Alu Yb7 atcacaggcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctagga
atccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggatacaaacaaatggaagaacattccat
gctcatgggtaggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttctt
cacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatcgccaaggcaatcctaagccaaaagaacaAAGCTGGAGGCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCCCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGCTGGAGGCATCacactacctgacttcaaactatactacaaggctacggtaaccaaaacagcatggtactggtaccaaaacagagatataga
tcaatggaacagaacagagccctcagaaataacgacgcatatctacaactatctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattcc
ctatttaataaatggtgctgggaaaactggctagacagatgtagaaagctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatgga
ttaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcacaggcaaggacttcatgtctaa
aactcc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1464 chr11 115255685 115255686 RIP_Alu_chr11_115_01 0 + pAlu11-36736991 NA NA SINE Alu Yb7 tgcgtagaggtgtttatagtattctctgatggtagtttgtatttctgtgggattggtggttatatcccctttatcatttttttattgcatctatttgatt
cttctctcttttcttctttattagtcttgctagcagtctatcaattttgttgattttttcaaaaaatcagctcctggattcattgatattttgaagggtt
ttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttctctagttctttta
attgtggtgttagggtgtcagttttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttaAATGTGTCCCA
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATGTGTCCCAGgcgattctggtatgttgtgtgtttgttctcattggtttcaaagaacatctttatttctgccttcatttc
gttatgtaccctgtagtcattcaggagcaggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttctagtttgattgca
ctgtggtctgagagacagttttttataatttctgttctttcacatttgctgaggagtgctttactaccaactatgtggtcaattttggaaaaagtacgat
gtggtgctgaaaagaatgtatattctgttgatttgtggtggagagttctgtagctgtccattgggtccgcttggtgtagagctgagttcaagtcctggat
atccttgttaactttctgtc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1488 chr11 118465032 118465033 RIP_Alu_chr11_118_01 0 - PBGD NA NA SINE Alu Ya5 accctccctcccccagccattcttgcagtccaggcagccagatggctcagaaccagacactctccttttctgaagcctgaaaaaacccacctatgagctg
ccttcagcctctctgagggtttaagcccagcagcctatctgacaccccgggtcccagcaagagacctagcatactagggtcccagcaagagactgggagg
gcaccacactctcctatctttacttactcattcttctccagggcatgttcaagctccttggtaaacaggcttttctctccaatctgccggacagaaagag
cctgagtgaatcccttcagggaaggaaagaagagtggggacaagaactggggaggaagatgttgttaccttagagagtgcagtatcaAGAATCTTGTCCC
GGCCGGCGCGGTGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATCTTGTCCCctgtggtggacatagcaactgaggagagagtcaatcaatcaggtgctcattattgatcagcatttactg
agcctagcgctgtgctacgattcatgatggggacagaggcacataatccctggttcctgccctctgagtatatacaatcgagcaggaagaccagaaacac
tcataaaaagacccaaagctcaagatgttaaatgccaggctaatccaggtagtcagagctggaggtattcagaggaaagcaccttcagaactgggagcag
cccagaaggaatctcggggcagcgggacgggctttagctataggcaaagccagaaatgttgtgttctctcctctcggggtactgggcttcccattagctt
ccactcctttccagaaaa Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.PMID: 11700292.
- Mustajoki S, Ahola H, Mustajoki P, Kauppinen R. Insertion of Alu element responsible for acute intermittent porphyria.Hum Mutat. 1999;13(6):431-8.PMID: 10408772.
Direct sequencing NA 0 0 0 Acute intermittent porphyria exon
1494 chr11 119224731 119225011 RIP_Alu_chr11_119_01 0 + Ya5ac2122 GATTATTGGGCCAGCTTGAA GAACAAATTCAGCACGAGCA SINE Alu Ya5 ggaatattgccacgaagtgtgttatgaggttgattagaatggactgacttgatgatcctaagagaaaggctgggtgtggtggctcatgcctgtaatccca
gcactttgggagacccaggcgggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaagccctgtctctactaaaaatacaaaaaaa
attagccaggtgtgtggcgggcgcctgtaatctcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaa
gatcgtgccatggcactccagcctgggcgacagagcgaggctccatctcaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaaaagaaaagAGAAAGGA
TCTCAGCTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG
AGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGGAtctcagcatacc
tgtgtttgtcaaggaggctgacttcccacctttgccccatctttgcatttctgaaaagtttctttagagagtaaacacagttcagtcaagagccatgtcc
tctccccacacatgtggctcacagccctaagaggtggaagggccttgctttagggcgcagtgaggaatggctgcaggtgcttggtgctgggcatgtgtgt
tttgagtgcccgggtgtgtttctgtctgtgtatgtaacacacgtgtcaactgggacctatgatgctggctggaactcccttttcatatcctagggaagtt
caatgttttatcctgagatttctaagaatttccagagaggggagtgagcttgagttctcatgagggtcttggctccaagc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 1123 835 NA intergenic
1514 chr11 121782859 121782860 RIP_Alu_chr11_121_01 0 + pAlu11-122311562 NA NA SINE Alu Yd3a1 tcgtcatttctctcaccttcaatcaagcaggaaaatttgccctacactgtctattcttcttctctttccattcaaatctcctagtctgggatgacataat
gcctggtatttaggtgcatgctacagcctccgggctgtttttcctgtttccaacctttccctagattgatcctgcacgtatatgccacctttatcttctt
aaaatactgtttttttcctcaatatgcttccaaaacggaagaaaggaaacataagaaataagagaatatgttcatgactgagggacaggcaaatattttt
agacaaaagccaaaaagaaaaaaatgataaataaattgacctatattaaaatcaagaacttctgtccctcaaaagaagcattaaAAGAATGAAGGGCCGG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATAAAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAAAGGCTGAGGCAGGAGAATGGCGTGAACCC
GGGAGGCGGAGCTTGCAGTGAGCCGAGACTTGCGCCACTGTACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAATGA
AGGGCCGGGgccgggcgcggtcgctcacacctgtaatcctagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcaagaccatcctggc
taacacggtgaaaccccgtctctactaaaaatacaaaaaattaactgggcgtggtggcgggtgcctgtggtcccagctactcgggaggctgaggcaggag
aatggcatgaacccgggaggcggagcttgcagtgagccgagatcgagccactgtactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaa
aaaaaaaaaagaatgaagggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaagcagatcacaaggtcgggag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1533 chr11 124335361 124335456 RIP_Alu_chr11_124_01 0 + 18844 NA NA SINE Alu Ye5 acacttaacttccaaaaggacaagtgtttttccaaacaatttgaatgttgctattggaagttctaggttacctccttccctgatgcctggggatggaata
gaggatgaagagaatcagaacgaattattccaacaacaagcccaggctgtaagtacctgttctttttattttatgtctatgatattttccctatccccta
aactataaatatgacatctagggtatgaggtagggattaagagttatcacactcagcttcacttttgataatcatccccctttttttttttttttagctt
tgtaaagtggggaatagtgggataatgctttttaaaaattttaaatttaaattcatttgtgtttggtaagatactctaaaattatctAAAGAAAAGTGCC
GCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA
AAAGTGCCaaagtgctagaattcaaaacctattagaaagcactttaggtcaagaacatggattttccaagttatattgaaattatattctaggcaagcta
ctattagtttgtaatttacagagagaaataattcttaccttcgttgcaaagaagttcagtatacataggtggcatttcatttattatttatctttgtctc
atttttcttatttttgttttttaatctgattatcacaataaatgaatctatagttgtaggttaaagaataatacatagtaaattcgtaacatatccagag
tttttggaaaaatgtaatttttatttaatgactcattttatatacctaatatttaaaaattaaccactgtgagtagatttcatccattcacattg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1592 chr11 132063804 132064084 RIP_Alu_chr11_132_01 0 + 15278 NA NA SINE Alu Yb8 atcactcatgctctttgaaccggcagtaaatgacaaacatgaggagaaacaagagcactaaactggtacccgtaatctagtcctgaccgacactagcttg
agacattgagtgtgaccttgggaaatcaaagagctttcctgggcctcagttatccaatctgaaatccaggatattggatgtggtggttgccaagacctct
ccaattaaaggctgtaatttagaaattgtcttttttaacctttttcaaggaatgatagtatattcaatgcagcctggaaataatgatggtatcactgttt
ttgatggaattggtactggataaccttacattaagtagaaccaggctgcattttcagcaagagagcatattatctaatagatacaaaataAAAAATAGAT
TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAA
ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG
AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGATaagctccttt
ttgtgtatttgagaaacaaattgttagtaaaatgagctgactgtgctctttgagcccctgagctgcctgccctgaggattacgtgtgacatgtaacaaat
cccgggaatgctgtttcagtctgtgaggcagggctccataattatttttaatacatttctaggcttgttttcagaatatacaaagaaaacattcaataat
gtcatctaaattgtgaagggcaattagattgttacattgggattttcactggattatgtggtgaggtttcctcacttggaataaggccctcctttgtttt
ctcattgatttaaaatgacaagtttataaagagcaaaaatgtttggatgactgacagttcaaattttgtggtaaagagta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
594 chr12 1222332 1222644 RIP_Alu_chr12_001_01 0 + Yb8NBC3 AGATGCGCAAGTCCCTGATA ATTTTTGGATTCAGCCAACG SINE Alu Yb8 aaacttcaagccataaaaagatgaaaaaagtattagcaaatgctctttattgtattcacctataaaataacctttcttcttatgaaaacggagtcaaatt
ccttacagagctcctgtctctaaaggttgtgagcattaatgagatgatacatgtaaaagcttctataagagcaaatgttaacaggattggactaggtagt
agtaacataacaggtacagtgggtcctccatatccataggttctgcatttttggattcagccaacggtggattgacaatattatggaaaaaaacaccaat
aaaacagaataatacaacaataaaaaataaatagaaaataatatagtgtaacagctatttacatagtgtttacattgtattgggtattagAAGAAATCGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AGAAAAAAAAAAAAGAAATCGAgagatgatttaaaatatatgcgaagatgtgcatagattatctgcaaatacgacagcattttatatcagggacttgcgc
atctgtggattttcatattccaggggagtgttagaaccaatccccagaagatactgaggtgctatgtagggatgtaatgaaacgtgagagatactgaggt
gctatgtagggatgtaatgaaacgtgagagatactgaggtgctatgtagggatgtaatgaaacgtgagagatactgaggtcctactgtagggatgtaatg
aaacgtgagagatgctataattttcttgtaaaaggaggcactcacttcattaggagagaacttttaatttttccggtaggattttgtgagaaatttgcct
cgtgttacttca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 61 558 236 NA intron
628 chr12 5639863 5639864 RIP_Alu_chr12_005_01 0 + 3372 NA NA SINE Alu Yd8 aagctatcagcaacctccattagtactgcagaaggtccctgacttaatgatggttcgacttacaatttttcgactttacaacaggtttatcaggccatta
aatgcattttctacttttaatatttctgacttatgacaggtttatccaccataaccccactgtaagtcaaggagcatcctgagatatgaatccttgatat
acagccttttctataccatcatacgaacatcttaagccaaatgactatgaactttgaatacatctaaaccctgtgctgtggcctccaatgcttaccatga
tccgggctttgactcctctccaactttatctcttgccatgcaatcttttgtatactccatctcagccacactggcttccttcctgttcttAGAACACGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCACCACAGCACTCCTGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAACACGCCcc
atagcaaaaccttagcatgactcctctcctcactctccacccagctcctccctcagctcagccttcaattctcgattccagcatcactcccacaatgaga
actttcccacgccccttgtccatccctggtccatgttattctctaccacagcacttattgctatccaaagtgatcttgtttatttattcatctcctaact
ggctttttaaggaaaacatcagctccataaaagcaaggaacttcaaatctcattcaacatggatccagcacttgggtcacgctgatcacagaattcattt
gcatggatgactcagagagtggatatcagtttggaaacaatagccgggctcattttggtggtgctccatgctcataatattgggaatg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
662 chr12 10125470 10125471 RIP_Alu_chr12_010_02 0 + 19912 NA NA SINE Alu Yc1 acatggggacagagtgaccaggacacacttacctccagctttgttatacagctcacgacagagtttttcagccacatgctgcagacttcctgcaagcttt
atattctggacttgaagagattgcaactcttgggacgtatttcctaatctttcttccatttgagaaatggtgtcttgaccagtattggagagctggtagt
actgaaaaactaacccaaatgaccaagtcagactggacagcttatttctatgttttatttccattttctgcttatggggaagacaaaacagtatattttt
tagtatctcaggctctgagttctcatattgcctatattcaagtttggactctagtacatatatgagaagttgtatcaccttgggcaAAAGAAATTAATTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAGAAATTAATTTtgtgaagtcatgaggagaaaatgacggctaagagggctaagatagagctcccatttggacaacagaacagggtgaggagac
tcacactgtgaacttttcctccaggaaccacctcaggaacataccaggaaaattgaaagaatgcacagatcctttgaaagaagcaactcaatactgaaaa
ttctggaagacagccaaaaatgtgtgaagtggggaaaacccacctctgaacacacatccctaatggggaacctgaaaatctgggttacatgagaaggatt
taacctcacctggagcagaaatggatgtagggagccaaatataaaatagatgcaaaatataaaagtagaagaagcagaggaaagagtcctgtaggcactc
ccatt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
665 chr12 10594768 10595081 RIP_Alu_chr12_010_03 0 + Yb8AC1617 CATTCGGGTCTACTGCGTCT GTGTGACAGAGCCCTGACCT SINE Alu Yb8 ggcaatcagtgtgtgaataggtaataaggctgactggaaaacaaactagtcagacgaggagaggatttcaaatggagatcaagtcacataacactattgc
tttcactcttactttcctcttctcataatcttccaaaagtaaactctggagaaaaacatcagaggatttttcaaatcaaacaaggagtcgaataatacat
tattttgacaagagttatgtgaatagaaaccccaaaataaagatcttacaaagcctaaaacatatccaaatttataccttctttagatcattcgggtcta
ctgcgtctcagtgaattaggagtgataagtgcatattccacaggagataccttcttgtcattctcttctgagaaataaagtgaaacAAAGATTGAGCCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGATTGAGCCTCatcacaatagtgcgtagagatcagaggtcagggctctgtcacacaggacggcctggagtttgtcgtaagccag
tgaagtagacggtggtggctggcaggttcatcacccagttatcctagcgcctcacaatcttcacaaaggcacccatgctgccagtgaagcgcgtcctggc
ggcacagcggataccatttggagacaggtgcaggggctccaggacaccactgcggcacaggaggccctgccccgtggctcggagggaggagggcgattcg
gcttaggagaggtccagagtctggagtgaggcttcagtcccagcagggcgctgagagcgcaggcggaccttcaccacgtccaggggtgtcctggagatgg
aggtgacggctgc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 483 156 NA intergenic
667 chr12 10829041 10829353 RIP_Alu_chr12_010_01 0 - Ya5ac2181 TTAATTTCCTGGCTTTCATGG TGAAATCATCAAACATGGCG SINE Alu Ya5 gggaaaatatgctgaaaaattgaaaagtaggtatattgaaacttacaaaattatttttaagtttaaattttttttaacatcacaaaaacataatttgtta
taattttaatttcctggctttcatggaagcaaatacatcataatatttttaagatgtctttctctgattgtcttgttttcagttaagagaattgccatgt
ttggattcctcaaggatccagaactagaaataccatttgacccagtgatcccattactgggtatatacccaaaggattataaatcatgctactataaaga
cacacgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgattgactggattaagaaaatgtGGCACATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAGTGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACGCCTGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
AAAGAAAATGTGGGCACATAtacaccatggaatacgatgcacgcataaaaaaggatgagttcgtgtcctttgtagcaacatggatgaagctggaaaccat
tattctgagcaaactatcgcaaggacagaaaaccgaacactgcatgttctcattcataggtgggaattgaacaatgagaagacttggacacagagtgagg
aacatcacacactagggcctgttgtagggtggggggagtggggagggatagcattaggagaaatacctaacgtaaatgttgagttaatgagtgcagcaaa
ccaacacggcacatgtatacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaatttaaaagaaaatgatcacagaatgctattcta
aaatatgtacat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 1173 853 NA intergenic
683 chr12 12908915 12909215 RIP_Alu_chr12_012_01 0 + PV1C TAAGCCCCATAAGGAATGAGACTG TGTTAGGTACTTTGCTTGGTGCTG SINE Alu Ya8 gatctttggagaaaggcatggcctggcaggctctgcatggtgccacaggcctatctagctcctgtctctcctgcatttccttccctactggctgctttca
ctctttaagctcctgcccaccccagggactttgcacatgctattttttctacctcctctgctcttctgccctctttatttaggcaacttctactcatcct
tcagatcccaggtcaagcatatccttcttcagggaaggtttgcttgacatcgctgatggggtcaaatcctccttttagaggctatcaccacacgctgcat
ctgtattttataacacttgtcacagtattatatttgtctggttctttgattgatatctattactctcactagattataagccccatAAGGAATGAGACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAGGAATGAGACTGaatctatttttactcatcattgtgttttcagcaccaagcaaagtacctaacacataataggcactcaatgaacatttgtggaataa
actgaggaataagtaaagacagaagatctaaaacatgaagggggctacagataggaaagggctggggagggaagaggagatattcaagagagggaaacga
aaccaatgaggctacttgtaagtgatcttgcagtgtaaatgagctgaacacaaacaaacccccaaagcggcagtccatagacccatagaaatggtgacag
tgcctgctgagttggttagcctaccccacacttctattcattgctaaaggcatctccacatatagataaccgctcactaaattttgcttttgctcaggaa
UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.PMID: 7714898.
Library screening NA 0 0 0 NA intergenic
703 chr12 15514700 15514701 RIP_Alu_chr12_015_01 0 - Yb8NBC77 CGGAATGTTCTGAGGATCAAA GGAAGCTCTGCACAACTCCTA SINE Alu Yb8 gtctgccccagcctgtaggctgccaggttatagcccttgaattccttgcactgccatttccttgaccattactcatcttttgtccttcagtttctagatc
atactctattttcttggcccaaccagagtgtaggtgatagctaaagtctgtcaccaattaagcattaatttaaaataagtacaaatgatattttctcatc
aagttgccatgtgtgcatgtgtaaaatgacagttcaatatatataataatgcagcaattatttcctgacttctaaaatgaactcaggctggaagctctgc
acaactcctaattttggagattaaacaaaacacacttgaggaaagaattcaacctgccagttttaagtgaaaagaaattgttctgccAAAAAGAAGTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAGTGCCaagattttatgtgatatgtagggtaataataatagtcatataccaaattttatattttagaaagcactttc
aaatatattttctcctttgatcctcagaacattccgttaagttactgtctcaattcacagaagaagaaactgaggttcaaataattaaatggatttctca
aggctaccctattatattgtggaggagctagtactcaaggcaattcttataactacagattttgtgactctattgtactacagtccccagactgtaagat
cctggagccaagatgatttcccaaatgctacctttcatatctgtacttaattggtggcaagttccctcagcacaaactgtgactgacttcttctagaata
tgcctgataaatcctc Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 55 547 218 NA intron
707 chr12 16067671 16067977 RIP_Alu_chr12_016_01 0 - Ya5-MLS64 CTAAAATACATAGGCTCTCTGAAGAGG CAGCAGTTTCCAGCTTACTGATG SINE Alu Ya5 atgccttttgaaactgtcccaaagtttttggatgttctgttctgtgggggtttttcttcccagttttttctcttcacatttcagtttaagaagtttctat
tgacctatctttaaggtcactgatttttttcctcagcagtttccagcttactgatgtacccatcaaaagcattcttcattttgtcccagtgtttctgatt
tctagcatttcctttcaattcttacttagtttccatctctctgattctattatgcatcttttttcatgttgtctgttttttcattaaagctattaacata
ctagtcatagttattttaaattctctgtcagataattcccaaatctatgccatatctgaatctgattctgatacttgttttctctataaagactgTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGACTTTGAgttttttttcttgcctctagcatccaatgtattttttgttgaaagctatgcatgatatattgggtaacatgaacaaaaacaaatgggcc
tttggtgtaaggttttatgttaatcgggcaaggagttgggctgtgtttaaggtttgctgtagctgccatagtcttcaaatttctatagtattcttgtttt
tatctcccctctttattctgggcttccctaaaattcctcttcagagagcctatgtattttagctctgtcagctgtaatcttatactgaaaccatgttgct
gtggtggtaacagatgagggaggagtattctatagccttagtattaaatctcagtctttcagtggtcctgtgtccctgggctgtaactgtcacaaatgtt
tcttag UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
743 chr12 20753800 20754124 RIP_Alu_chr12_020_01 0 + pAlu12-20762700 NA NA SINE Alu Yb7 taaataattacacttttgtctcttctccaacagagtctcaataggtacagaccacatccatagctctcattttacaactcagttaattaaaacctaaacg
ttaatttttttagagtatcacagatagcaattagtaacaaaagtggctcttagataagctgccagttatttgaaatcaaaataattatgatgcttgcaac
agtaacctgttgacagaaggaactgagttaaaataatgaaaaattttcaaaatactccatgatcaccatccatacttacttcaatagtcttgaagcatca
taacagtcaatggtttctctgtaattattaacaatataaaattatatttaccatgatttcaatgctaaatgttctcatgtgtagttAAGAATTGAAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGAAAACAGgttaacctcattaagtgattcttaacctactatggtcaaggaaccctttgataaaattata
aaacctgtaaccctcttctcttaagcattcacataaaaacatacatacaaaaatgttcttactttttcagtggggttcatgaacccattgaggtgcagat
tgcacaaaacagatttaaggtaacctgtttatcaacttgaatatttcagtaatgcaatacatcttttccttaccatgctgaataaacagttctctacttt
tctttttttttttttttttttttttttgagatggagtctcgctctgtcgcccaggctggagtgcaatggcgcgatcttggctcactgcaagctccgcctc
ccgggttcacgccattctcctgcct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
752 chr12 22015063 22015064 RIP_Alu_chr12_022_02 0 - pAlu12-22024050 NA NA SINE Alu Ya5 tggttagagcaggggtgtgccggggctgtaagtggtagagtttggttggaatataaggaatcagtgaagatgggcaagctttgtgaagactttaaatgac
agagtgacaacatcagtgagtcatgggaggtttgtgtgtgtggtaaagctgtaattggagatgtattctggaaagattaacatgatatgtatgtgtaaaa
tggttcaggtgggagaggccaattagaagattgatacaataattaatgattgatataataactaataactatcgatacaataacattactaatacaataa
ctaatctaaaaggagaaaagaggcagaaaggaagagatggaggccagtcattgctgagtgtatcgtaaatgattgaatatttgtatAAGAATGGAAGGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATGGAAGGGAacagagagacagtgagtgatgaattcaagactaactccaagcaaggctttaagtcagaggcaccagtgcaatacatagg
aaagttggaggtggaattagtttaggagcagggaaagagaagaaatagactatgggtagtttaaatttttattatgcctccaaggcactctaatattatg
aattttatataagaaaaaagtttagattttaccaaagtcctaatgatatgtagaaatttttcttgaccaatatcaatattctaggtttttcctactgtcc
ttcaaaataatgtctaaccctcactgtatttgtgaagcagacatattctaattacctgcctatttatctccactccataatgttctctatgctccttgct
cctggaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
760 chr12 22988830 22989146 RIP_Alu_chr12_022_01 0 + Ya5ac2182 GCTTCCCCAGTGAAATGAAA TCCCTGAGGTCATTATTTCCA SINE Alu Ya5 caaagtgctgggattacaggtatgagccatcgcacccatcctgcagttattttttatattgagcactgagcctgcctcatgaaattgattttagaaataa
gtgggatacattgtatagagagcaataactatacaatctgctaaaaactgttaaaaacttctctgtgtgtttgatagatgtaatgtgcactatgattagc
ctgctattctaatgtgtaaaccatagtttttaaatttgtttgtttgcttgtttgtttaaacattgcttccccagtgaaatgaaagttacttttactttga
gtcagtgtttagaaactgggtgtggataaatgaccttcaaaagtaaaacactggaaaaatgtataatgtttttacaatgcttttAATATTGTATATGCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATATTGTATATGCACtgtcaactaatggaaataatgacctcagggatgtgtttatcttggttttagcccacttaaaatacatt
tagcctttagcttttccttaggcccaaaccacatcaaatgggccacacacagactcctgaggtcactaccactttatggtcattttaggaagaaaaggaa
agcaaactctctcttcatattacgttttaggcaaggaattctcacaggaagagtgaatatatattttttcctttctttctttttctacactaggtgacct
gctagtcccacttttcctaaaggtagatttttaagcctacaaaatgaatctttaaagccagtttcaagtgtacttcattgtgagtaagagaagcttcaga
atccaatattatctca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 498 167 NA intergenic
765 chr12 23687006 23687305 RIP_Alu_chr12_023_01 0 + Ya5ac2140 GAACGTGGAAAACAGATGGG ATCCCCATGTCACCATCCTA SINE Alu Ya5 tctaatatgttaaagacagcctccaggaaaaggtgatgtttaagctgaaacttgaattaaattatagttagctagacaaagaagggaagaaagattgttc
caggcagggaaacaattttcatgaagaatcaaatggaagtgttagttatagcccagtccctgtattgctgaagtacagagagcatgtagggaagtgagat
caatgggattggggagggagtaagatgccagattatgtgtgatttctgtaaacattaaatgatctaaactttatcctatacggtaaaggaaatcatgaac
gtggaaaacagatgggttgagtaaaatcacttgggtgggaggttgagagctgtaatcaactagtgagcagatgcagaaatctgtatAAAAGGTAATTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGGTAATTATGgtcagactaggatggtgacatggggatggagagtgaggcagggactccagagatatttaaatggtataactggtaaaacctaatgac
tgttacgtatgagagtaacagaagactcaaggatgacttccaggtttttcactaaaacaactgattgacatgtggtagtatgtactgggtttgtaaacac
agattagaagcaagactgccaggtggggcctaaagggtgttgttgcggggaaggaacaaagagttctgttttagatattttaagtttgaaattatgatta
gatatccaggttgaggtatttattagacacttgataaacatgttaaaattttaggggaaaagccctcataggagacatatacttgagagtggttagcat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 444 131 NA intron
786 chr12 26402304 26402619 RIP_Alu_chr12_026_01 0 + pAlu12-26411204|Yc1RG142 GCAGAAAAGATTTATCTGGGGTCT ACTTTTCATGCTCAAGGCTCA SINE Alu Yc1 gcactaagcctgagtgggcagtgccaaaattgagttgcagtgcacccagttgggaatgaaactaaatagctggtgtcagaccaggcacccaccctacaca
ccacctctggttgtggcccatgtggccatcagctgctgcccatggccagaggggaagggtgaccttggtggcaaaggtgaggaagctgcagggcggctag
ctcgggttgctgggtttacatttgctaactgttgctgctcagagacctataaatagtggacatttggttgaactattacaaagagagctacagaagctag
aatacacccagaaacctgcagctatgtacatatttaggatatgatcatgcaaggcagaaaagatttatctggggtctatggatAAAGAATAAAGTCGTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGTCCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAATAAAGTCGTTCttgttttcccttgagccttgagcatgaaaagtgtgctgctggactgtgatcttacatacattctctct
ttatttcttacccattctgcctgaagagctggcaacaatttgaaatccatcatcccggctgtgttttgtggattaaactacttattctcatatgttctac
ccatttccttgtcaggagtgaattctgtgtattacaaataattgatgatgttgggcacatctcagaacaaaaaaaaaaggcactgatatgtttttaatat
tttcctggcataaattcttaactcctttcctagcccagggggccttaagtgatccagtctctgtccccctcccctcccccatctgtggctgccacctgcc
accctcactgactct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening|Genome comparison NA 60 411 79 NA intron
793 chr12 27325270 27325589 RIP_Alu_chr12_027_01 0 - pAlu12-27334173|Ya5ac2145 AAAACGTCAGAGCAGGGATG GTTGCCTTTAGGAAGCTACAGA SINE Alu Ya5 gtgctgggattacaggcctgaggcaccgtgcctcgcctcaatttactctttgacagaaaatttcccagcttagatcatgattatctggaaatcaactaag
cattatccttatctccatccttatcaccactgttgttgtcatggataccatttataaaacaccttctctgtgccaggcagtactgtgtgcattatcttat
gtaatcttcacaacaactctatgaggtaggtactatttctccattttagaaactggaaaccagggcacagagaggttatttaccagaggcctctcaactg
gaaaacgtcagagcagggatgtgaaccctgttcactctagagctgttgttctaatgaccatgcctactttttacaaccagagtcagttAAACAAAGCTAA
AGCCGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA
AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAAAGCTAAagccaaaaataaatctgtagcttcctaaaggcaactcaagataattactggtcttctcttacatgatca
ccttatttattcttagtaaatcttaaatggttttataattccttgttttaaagaaacttaaaaggatcaactcgtctaaccttctaacaaagacaaggct
gtgttgctgtgcctgattcaaactgcccttcttgcccaaacagctctgtacgctttttaaagagttttataagctgttggaaatctatgcaattatttca
gactatttaaaatatgtgttgtctatcttatgctgtcttcatttacttatctaaataggaaaaaagtatcagaatgctttctacatgaacaggaagacta
accaacgttgaatggcagc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 465 135 NA intron
807 chr12 29171518 29171817 RIP_Alu_chr12_029_02 0 + Yg6AH98 GCACCATCGATGAAATAAAT ATGGTCAGAGAGCAGACATT SINE Alu Yg6 ttttcctaatctagaagcttatattggggattttagatctttcttctttcctaaaatatgcattcaatgccataaatttgcctgtaagcactgcttttgc
tgcatgccacaaactttacccagttgtatttttattcatttagttcgaaataatgttaaatttctcttcaggtttcttctttgagccatgtgttatttag
aagtgtgttgtttaatctccgggtatcttggcattttccagctacctttctattattcatttctagtttaattctactatggtcagagagcagacattgt
atgatttctgtaccttgatatttgttgagtgtattttatggcccagaatgtgttctatcttggtgaatgttccatatgaccttAAGAAGAACATGTATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAAA
AGAAGAACATGTATTGtactgttgttggataaagttgtccatagatatcaattatatttatttcatcgatggtgctactgagttcagatatgttcttatt
tattttctgcctgccaaatctgtctatttctgatagaggagtgtcaaaatctcttaactacaataggagagtcctccatttctctttgcagttctatcag
tttttgcctcatgtatttttacactatgttgttaggcacaaacatgttaaggattgtcatgtctttttgtagtagtgacattattattattatctaatat
ccctctctgttcctgattaactttccttgatctgaagtctgctttatctgaagttaataaagctaataccctttcttttgattagtgtttgcatggtat UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 60 497 181 NA intergenic
809 chr12 29464687 29465019 RIP_Alu_chr12_029_01 0 - Yb8AC1635|pAlu12-29473598 AAAGTTTATGCTCCCGCTGA AGAGCTGGAAGGAAAAAGCA SINE Alu Yb8 ggacagaaatacaaatgtgctgccagccatgcttggagagcctaggttggttggtagctgtgctgcatctgcaatgtcatggccctggctagttagtctg
cagcacccagacaacattattatagaggctccctggccacaaaacagtgggtcctggcagcagtgcattctaactttaggtctgtgcctgtgcctgtggt
gcagggtctctgagactgcttgttcaagggctcacaatgggtgtacccatctgctctccctatgtcacaagaaacattaaagtttatgctcccgctgata
tagtcttcaccttgcaaatcaatgaacatattaggtgaatgaaactttctgtccttcaacaatacacataccactaatagtttttcattttAAAAGCTGC
TTTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAC
AAGGTGAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTGCtttttccttccagctctttttaaaataagtgactaacaatgctgccctctctttcctca
tctataaaatggagataatgatgtcttaacatgtgtgcatcagcttctgaacatatcacctagagcactggagttgctaaacggtgggtctccttcctcc
ttgctctcctctactgactgatcatcatacctgctcccaaaataaatatagaaagttctgaaaaattttaaagaatgctcttggaaagaaaattttttct
ttgatttcatctgaatcttgtttccatgtgatattgagacattatctgaaaattccttcctcagtttaaaggttgctcagtactaaaattctgatatttc
taatattggtctcccagaagtagtgagatggt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 480 139 NA intergenic
826 chr12 31665009 31665296 RIP_Alu_chr12_031_01 0 - Yd6JXH14 CCTTTATGCACTTTTACCTTCC GACCCCTTATCTTTGGAATGC SINE Alu Yd6 agtctggaaggaaatcagtggaaatggagataattgcattgaggtggtaagattatgtaagccttagattttcttctttattgttatagcatcacaaaaa
ataaaaatgagaagaaaagaagagaattacaattttaatggtcagtgctcaatacttggtaggtacatgtactaagtgcagggaaggcaaaggggacact
cattacactctaattcactcagattcagagaaacttccaggccagaggagccacagatatttataattaataacctgttttgaccccttatctttggaat
gctgattaacatgaagcaataattactattaatatattagtctttcaatattgctgagactattcataagactgaaaaccctttAAAAAGCTCCCACGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCCCAAAAAAAAAAAAAAAAAAAAAAAGCTCCCAC
GACacataaacataaggtgatattttaatctttatcataatgaatttatccaatccagggtttctaaaattgtcagtggtaatttggcctgggaatttat
cctagaatactctgacgagaactagattaattctggtctcccacttcacagtgttctgtttgccttgggactcattgtaggtaaaaaggatgtggagtct
ggaatagtctatgcttatgaaaccgcaagcaaaattcctagagtggccctgaattcaacccatcttcctgggactatgacactcatggctatgggtgaaa
ccaacctttgaacagtcattgcattccagtactcccataacttgctagtcattgcatttttttcaaggcctcttttgaagagttatt UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
Candidate screening NA 60 830 527 NA intergenic
835 chr12 32854882 32855181 RIP_Alu_chr12_032_01 0 - pAlu12-32863776 NA NA SINE Alu Ya4b tataatgctgatgaaacatcactgttttggcatcattgcctcagaaagacactgactacagctgatgagacagcacctactagaattaaggctgccaaga
acagaatatgctgggatgtgctaatgcatcaggcatacataagtggggtgatagataaaaacttgtgtcctcactgttttcaaggagtgaatttcttacc
agtctgttattatgctaacaaaaagacctggagcaccagggacatcttttttgattggtttcacaaacatttggtaccaagtggctcatgcttgctgcag
ggagactcaattggatgatgactgcaaagattttgttattacatgacaactgttctgctcatctcccagctgaaattctcatttAAAAAATGTTTATTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATGTTTATTCTatgtactttcccctaaatgtgacttcatcaatttagccatgtgaccagagtatccttagatcaataaagagtagattaaaaaaac
acttttcttaaatagcatgctagctaccagcagtgtgcagaggtgtgggtgtgagaaagtgttcaaaaggagtttagcctgaggatgctctatatgctgt
tgccattgcttgaaacaggtgtgcatgactggcacaactctggcctacaactatgtcgactggtaatgaagtcaccagatggtgactttgaaggattata
tatgtcaagtgagaaaaaaaaatgatggctgaactccttacctttgcaaaaaaatagaccttcacaatctgtcagttagctggaagaagtgaatactaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
889 chr12 39946098 39946400 RIP_Alu_chr12_039_01 0 + pAlu12-41376478 NA NA SINE Alu Ya4b ttagcataggggcagctgctgactgacccaaggatggactagacaaaggccattcacacttttttcttagccagatgcatgtaccacttgtacttagtta
tttcattgcatcatatttttaacttaaatcaatgtattgtaaaggatactattatcaattgcaaaccagaatgatgtgccataaatatcagggtaccata
aaaataaacacaggggaaatagtttacattgaaaaaagaaattaaacaataaaaataaattatgatggctctaatatctacgtaaaatgcatagctgaaa
ataagttattcaaatcaaagcctttttcttctcggttcgtaataaaatgatttgctttcacccagtgttgcttcgttcatgtcttAAAATGAGATATTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATGAGATATTAAaatcaataagttaattgcatttttttcctcttggtattgatactaactgaaactgagaatcccattttacctgtgcacctagt
tggatattgggagctggactgcaatttacattttcaattacagtcagtggtcctctgagcagtaggaagcaaatatgaagcaggaagctagatcccaggc
tactctttgacccaggtcaggaactcaccttaggaaaagatactttaagaaatctaagaaattattaaagaagaatggcacaaagaccaattctggcaag
aatggaagtgggggtagtagttggttgttctaacattttagctttttagtccactcataatcttagactgatctgttttttaaatcagtgaaggctgtgt
aa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
896 chr12 40768966 40768967 RIP_Alu_chr12_040_01 0 + 21995 NA NA SINE Alu Yb8 cagactagcacaggaaaaagtctaaaaagtaaaacagaaaataaatctgttgagtgttgtctgacctgtttgtcccaagatatatttttggctagagtcc
ttcttttactataaaatatactaatatcgagaaataaattttggaaaaggctgtggtagtaaagtggaaataataagtaatctttgtattttcaaccagg
tattttgtgatttagtattttcaactaggtgtattttcaattagaaagatggatggggcttaaaagtagaacattttatatggaagttgaagttggtgaa
aaatgcaaaatcacaaaggaaattcagaaccagaaatctcccaggttatccctgaggttcactagcacgctgagggagaggaaatgaAAAGAACCACCCC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACCACCCCagtctgcaggaa
gctgcagtcaatctacagagaagaggatgaacttggatgtttgtttaaaacatgggttttgtcactgtagagatgcaaagagatcctaaactttggcatc
ttttgagcaagaaaaactgtaagcattaactgcataaaaccatcacccttggagtgatttttaaaaatcaatcacacatactcaagataaacgtctaaaa
ttgttttgaagataaaagttttaaaaagagatggggaaacttagccaggaacaatgtaataaaaataacaatagcacacagagtgcttgctacctacatg
ccaggcaccattctaagagttgtatatgactgcatgttctcattcataggtgagaactgaacaatgagaacacat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
918 chr12 43705812 43705813 RIP_Alu_chr12_043_01 0 + 20014|238919|pAlu12-45136302 NA NA SINE Alu Ya5 tccccagagcctacacaaagaacacacccctgcttgattttagccctatgagacccatttcagggtctgacctctataactataaaataataagtacctg
ttgctttaagacactcagttcatggtaatttgttacagcaacaatagaaaactaatacactgggtatcaggctcactgagccaattgctgaagaaaccag
acaaagagcacatagttcccaccctaaaggagctcaccttcttatgggaggggtgatccatgaacattcactctgtaacatagcaccaggaaggcagcta
ctatgtaacatagcaccagaaaggcagctactatgcattctggtgcttaataattatttactgaataaacaagtaaatgaatgtcataaAGAAAGATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAGATCTGaaagtgcactggcatcacaaaggaggaaatgatgagttcggagaaaacagtcaggttgagtcaagtataa
aagaacaataccgtttaagagagaaagaaccaaagccaattcaaacagttactagtatgtctgaaagcccaaggaataaagtctatccaaggaaaagtaa
gcagtcatcaaggctggggaaaggcataaagcagaggctgcatgagggcaaccatatccagcctgcaaatgggctttttttggtcttagcatgttggtta
agaattctgatttagttgtccacatttaaaaagcgggaagtttcacataaagtccagatttctgacacctcttcaaaggtaaccacactgggctcagagt
gagtagcaggtgcctcttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
931 chr12 45361633 45361965 RIP_Alu_chr12_045_01 0 + pAlu12-46792013|18789 CCTATTCAGTTCCATCTTCCTTCTGC GAGACTCCATCTTGAGCTGTTCCAG SINE Alu Yf1 accctaatatagctagccaatttcattgccttgtatctattattttctacacactttccaaagaatcaaatgcctgaatcattgcactagtaaaagcttt
accccaaagtcataaacagtaaaatttttagcaactgagctatcattttgtactgggggatatatgaacctcacatatggcaagatggacttttcttggt
ctttttagtcctgtgaggttttttcctttttttcttttcaatcagtatctagaaaaaaaattaccttgaaatctagatactttgagttcatgtaatattt
ttattcctattcagttccatcttccttctgcattaattataatgcaatgaaaactaaatcaataagtttagtctccaggcaattAAGAAAGTATCAGTCA
GGCCGGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG
TGAAACCCCATCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTATCAGTCAatgtagctctaggtagagcctttagtaaacctgaatctttaagacctctgaa
ctttttttaaaaaatgaaaaacgtacccagattttgaacatttgttttgtttaatactgttttgtactgtagatacagtaccaatcaatttagctcaagg
gtctgtttgacaaatgtcagaaccctggcgaccatggtgcatagaattatgtccaagcttcacatgtccaccatgaggccatcatatttttgactggggt
agagttctggaacagctcaagatggagtctccaaaaaggtgcccagcttctggtcatcactgaatgttgtgcctaagccaaagtcaactatttttatgtt
gtagttggcatgtagaaggaagttctagggct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping|Genome comparison NA 0 0 0 NA intergenic
985 chr12 52531688 52531963 RIP_Alu_chr12_052_01 0 + 13247|Yb8AC1634 GCTGGACCAGGAGTCTCTGT AGGCACTTGAGTCCTTGCAT SINE Alu Yb8 gagaggtagaactcaggcaaaacttctcccccagttctgtcttagtctagttttcctgcctgaagagagacattttcaattcatcagagcttgtgcctcc
ctccaacttaagatctaaatgagtgttttcccacctctgtctatctactcacatcccaaatatctccaaagaaactggggaagagctctctaatggggaa
cgtgaacattccacttctctattagagaatcccacaaaattatgtcagagagctgctggaccaggagtctctgtttctcagtaccctgacttttgctccc
tccccactgctttgcttggctggaatcaattgacattgaacctgcctattgcatttaagagaagtgggagtacagaaagggttttAAAAAGTTAGCTTCA
AATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATAC
AAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTG
AGCCGAGACTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGTTAGCTTCAtgttaggaat
aatgcaaggactcaagtgcctccctaaggatctaattttgaatctacagggttgaatgagaaactagtccatttgaggcagcctaacatggggcacttga
aaatggacattttctcacgatctgtcctttcctttaaaaaaataatgtaacttagaagaatatgattatcctaaaacattttattttttaattaaagagg
gttcattatgctacccgtctcatctcgtctcagaggaggaaaaccctgtgttcagcaagtttgctaagaaataattataggttcagatcttccccaggcc
ccgaaattcaattaaaatttttttgttttaagttgctagcagtcacatggtatgtatgtgtgtgtgcgtgcgtgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Trace comparison|Candidate screening NA 60 467 178 NA intergenic
990 chr12 53139775 53140076 RIP_Alu_chr12_053_01 0 - Ya5ac2169 GGGCTAGGAGGAAGTGATCC GTCTGGGGAGGACATCTGAA SINE Alu Ya5 ggcatgcgagttcccaaatctctgccgtatgttctgccatggaaaaacagtaagtgaaatagagacaaaatagttttactcttttcattgtgctaaatac
agttgatcttgattattcagatgtgttcagtctgaacaccttgcatttccatgacccttaaagtgagtgcctccttaaatgttatgccctaagcacctta
ctcagttcaccctactgaccgtggttaggagcaagaaattatgaacaggaaagtataagatcacagaagccaaaagaatattttcaaaatggggtgacca
ctgacgtcaaataccatgagaaaatttgggagccaataaaaaggttaatgatttgggctaggaggaagtgatccctgatttctttcAAGGCATAATATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGGCATAATATCAgtagggaattgggatcagaaattggattgtgagggcctaaaaggaaatgagtagagagaaaatgaaagtcataagtcataagaac
cagcataaagaatggtattcagatgtcctccccagactttagaggtcatgctgggtaaacaagtactaaatttgtatcatattaccgtcataatgaaatt
tccacatagagaacacccaagatactgtcatttttacttaatacaaactttcttttccaatgttgcccctagattcagattctcttgatttcagtctgtg
ctactgtttgagctaatttttaggtggctagaggattcactttaaaacgtttctccctggatacttgcatttcccaaaaaatgaagtcaccaaattatat
g UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 483 168 NA intron
1017 chr12 56744490 56744491 RIP_Alu_chr12_056_01 0 + Ya5HS4.32 GTTTATTGGGCTAACCTGGG TGACCAGCTAACTTCTACTTTAACC SINE Alu Ya5 gggcccaaatttcccttcagaatctccaccacggtactcatctatattttcagtccttaattaaatctggtttctgctgtgcttttcattcaccatttag
taaaaatgaaaacctttcttaataaatttcagagatgggagattaaattacttacataaatgctaatatggcaatggaattttttactaaattttttctt
gtaaatacatgatatggcatcaatataaatgagtatgaatgagtttattgggctaacctgggtacctatctgcatttataataccatttttatgagcaaa
tgcattgtatcttccagcaaacagacttgcaagctgatttctggaaatctagttttcgaaagttgaacactgtgtaattcaatAAAAATATTCTAATGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ATATTCTAATGAGaataaaagctagacagaggcataataatgcttttcctaatttttctacctttcttttagttacctttttagttacatgaatagtcta
cagcaaaatagctaagtgaggttaaagtagaagttagctggtcattccggcataagtgaaaatgtagaacttagagtgtacctttgcttaaagtcagttt
tctttcaggaattcattttaatattgtgatagtagagaccatgcgaaaaaatatgaaaaaactcaaacaagaaaataatctttaaagaaaatttgagaac
cttcatttccaaacttttataagtagtttttaccaaagacatgctcattaagctttgccaggccactgtcagtagtggatacatgattaaatccac Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening|Library screen NA 0 0 0 NA intergenic
1022 chr12 57344521 57344826 RIP_Alu_chr12_057_01 0 - Ya5_518 GCAGTAAAGGAGCAATTATCACAG CCGGAATAATGTAAAATCACAGTGC SINE Alu Ya5 gtaagagcaaagggtagggaaagatgaatcaataacagcatcaaactcacagatgcaacagctgaagtggcatggggctgcaaataacagagcatcctgt
agaaggaatatggtctagaaagtgagggctggttatcagagggagatatgaaagaagagagagtggggttctgcggggcagagagagatactgtggaaca
aacttaaacttttcactaatagtacaaaagtagtttattttaaattacaatggaaatttatatttgtaaattaaaatagtgctatgtaaaaatatactta
gaaggtcatatatgctttaagagaaaaaaaaacatattttctaggaactataaattaccggaataatgtaaaatcacagtgcttcAAAGAAGCAAATGTC
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAGCAAATGTCtttagatttgctcatttccactttaaacatttgttttcctagaacatgtgtcctataaataatctaacacccaatataaa
atttggcaagaaatatagcccattaaatttatcctattgtgctttctttatctgtcacatattttaatgtggttttattaactgtgataattgctccttt
actgctaatgatagtatgatactgttaacaatcaacttccaaggtgatagtctttatgatctgcacctccctcagtaattgcactaaaactgtgtgcctg
actcttgagttaaaggacacttgggtttcttgtacttgagtcaatttggtctcctttccagatggtaaattaaggactatgctatcctcttactccaaat
ttcca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 548 228 NA intergenic
1042 chr12 59990414 59990415 RIP_Alu_chr12_059_01 0 + pAlu12-61420894 NA NA SINE Alu Ya4 ctctattttatttcttaagagcaattcctagcatttcaattgttttctgcttaaaactgttttatatcacattaacacatgatctccattggaacaatca
atatcaatcaaatttaatttatgattcccataactgtagaatttctttttcccccacttttaacacatggctgaagttttaatttttttaaaatattttc
tctactttgtctatcagtatattacctaaaactatgttttttaaaagttcgttttttaagagagtctccaaaatatttcaaacctagatgaatatttttg
tgaaacaaaaggaaataaattaggaaaaggaagatggatttcaaaaggaaaacacaaaaagcatgctttccttctttttattttgattAAAAATTTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATTT
TCTCaatgaaaaattttcattacgtgtatcttgaacaaaaaagtatttcaaatattatttttagaatatttatattcataacacattttttctcccctgc
atgtttataaggatctaatggaacagatgaggcaaagaccaacaaatataaaattaatgactagagggacttgaaaaatacaaaactacagctagatagg
aataagttctagtgttctatagaactgtagggtaactatagttaatatgtaatttcaaatagctagagggcggatattgaatgaccccaacacaaggaaa
tgataaatgtttgagatgatggataagctaactaccttgatctgatcactatacattataagtattgaagcattgctacgtactccacaaat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1042 chr12 60022807 60023066 RIP_Alu_chr12_060_01 0 + Yb8AC1613 CCTTCCTTGCTTTTTGACCA AAGCCTTGCCTTGTGCTTTA SINE Alu Yb8 tcccccttccttgctttttgaccacacagactatcattaagatttctttccagttttcaggacaagaacgactctcattttggcgttggtaaaatgactt
acaaagacttacaacgtgtaattgcttataagtttttcagcttgaatgtttggtcttggccagtcagccaatcgttactcaaccttgaaagattcaaaga
acttcattaaggagtttctgcttttgttataaagaaaagagggctaggtgtggtggcttatgcctgtaatcccagtgctttggaaggccgaggtgggagg
atcacttgagcccaagagtttgaggttatagtgagctatgatcatgtcactgcactgcagcctgagtgacaaagcaataccttgtcttAAAAAAAATTAG
AGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCG
CGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC
TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATTAGatcatactctttttgccaaaatataaaat
aataaaaataattaaagaaaatagggctaatctattttacaggcatggatcacagtaaatatgcttatcatttttttatcatgaaatatgctgagaattt
acataaatagcctttataaaatatgaagaacatttattataggacagctgaaggatttggaatgttaactacagaataaagcacaaggcaaggcttttcc
aataaatgccttaggaatctcagtggttcacggctaattatcattatttcatttaggagaggtcaggtatcttacaattgtgatataggtactaccataa
tggtcactgagtaatatttatgtgaagttactgaaggagctctcacctttgtagaaata UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 892 621 NA intergenic
1070 chr12 63683558 63683559 RIP_Alu_chr12_063_01 0 + 17453 NA NA SINE Alu Ya4 cttaataaaacctatcatgaaaaccccatttaaaacttcaatctcgggctgggcatggtggctcacgcctgtaatcccagcattttgggaggccaaggtg
gggatcatgaggtcaagagatcaagaccaacctggcaaacatggtgaaatcctgtctttactaaaaatacaaaaattagctgggcatggtggctcacacc
tgtaatcccagctactcgggaagctgaggcaggagaatctcttgaatccaggagacggaggttgcagtgagcagagatcgtgccactggacgctagcctg
gcaacagagggagagcccgtctcaaaaaagcaaaaaacaaaaaatcccaacaacttcaatctcccatttccttccccagtactgAGAAGGTAACAGAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA
GAAGGTAACAGAATAaacttatgtatcatttacttattatgtttattgttgtgctcaaaatttctttcacttctttagattcactcttcacccttatcat
ctctgtcctgtgttctgggaagctgacatctatggtgtatatcaacaaatctcccttgctctctggcttctagttgtgttcagctataggtgacactgtc
aaaatgttgcatgtggggaagaaagagagtttggtgtatttccctaaattggtctgtcaaagaagactagactgctcagcacagtgtcaccaagcagaga
aaactcctgatcttacatagggctcaacttgaggtaaggaactcaagattggcacattttcagaggctcaaatggctgacatcatctgtagaaactttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1154 chr12 74585210 74585511 RIP_Alu_chr12_074_01 0 - 5142 NA NA SINE Alu Yg6 catcaaacagaccagtgtgatattattaaataggaagcacaaccctaggcaaacaggatgaaatccaattatataagggtgagagtaaggacttatataa
accataaaaataattatagaattggctagccaccatcactgctttaaaagacctgtgggtcagggctgatctatgatcaacgatcatgatcattgctgat
catgaatcagcaatatcatgtcattgtgggggaataaagctaagaccatccagggcagatgtaattcttcctctatgctctgagtacatcagccatgact
gtgctacaaataatattgctccctgaacttaaaaagaaaaagtctcaaatattagtattttagtttagccaataaaattggcaaagttAAAAAATAATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAATAATCCtctgtgttagtgctagtttgaagcaagtatattttcatatacttctgatggaactcctaatgataccacctttctacaaggcaattt
gacaacatgtattaaaaacctttagctgtgaatattcttggagcaattccaatttcagtatttttttttctcaaaagaaatcactggagacagatgcaaa
atttagctacaaagtgtttattgcaatataatttatatagcaagatcgggtaatatggtaaaacgttggctaggcacggtggctcaggcttgtaatacca
gccctttgggaggccaaggtggatggatcatgaggtcaggatatcgagaccatcctggccaacactgtgaagccctgtctctactaaaaatacaaaaatt
a UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1167 chr12 76411139 76411447 RIP_Alu_chr12_076_01 0 - pAlu12-77841515|Ya5ac2205 CATTTGCACTCAAGTCCTTCAT TATTTTCCCAAGCGCAGTTC SINE Alu Ya5 ccccagaacctcccacagtgcctccgacttagtagataaattcagaaatgattgctcaatgactcaatctatcaatgtttatatctgaagtagagaacag
aagcaggtcccagagagttttcaaatggttacctagcccatgaaatcttcactaccaaaaagttgacagtcgttttttcagttttgttgtgaagtatctc
cagggatagggatccaccatgacctgctttatatcctgttcctatgaaaatcattgttatatttaagatgcctaatttataaattcagaattctattcct
cctttttaaggatttagcagatctacccagtaatatctgtgtaatgtttacatttgcactcaagtccttcatttaggcatacattAAAAATATTAAATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATATTAAATATataagtcctttgactgtatattagaatagtgtaccaaaagtcaaaaatagttcctacagccagtagcctaactatat
acaataacacctccctcatctcatgaactgcgcttgggaaaatatcaagtcctcactcaagcactatcctggtgttatttagacacaattctggcatgca
tggcttaccgtcagaatcagcaaataaagattagctttctagaagtaggcacattgccagcagtaaggaataagagtagaaatgagaattcaaaaaaaga
cagctgtctggatccatttagtacatagtagagtggggctacatattctaatataccttgaggacagtgttgtgtcactcacggggcagtaaattaatac
atatctct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 494 171 NA intergenic
1181 chr12 78210135 78210440 RIP_Alu_chr12_078_01 0 + Yc1RG207 AGAACAATACTTGGCACCAGAGA AGTCATCAGAGCAATGCTTTTCG SINE Alu Yc1 gtaccaagtttttggtccaaattgtgtaggataagttaaccttaaattgcattctattaaccaataagagggtatttccgtaagcatagttatgttgaaa
tacagttttaaaaagcaaaaaaaaaaaaaaacaaaataaaagatagacctgctaagcttagtcaattaaaaattaatggtgagacagaactacagggtag
attaaagctcagcctatatgcatcaccatgactccgcttactactgatgtctccttcggcttgttgcttaatcctttcataaaatgggattagtatttac
tcacctccatgagttgtgacacactctaaatgagataattaatgtaaagcacttagaacaatacttggcaccagagaagctctcaaaaaaatATTAGCGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGTTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATTAGCGGtttttgttattaaaaacattggtcagagcccttatttccttgccagccgaaaagcattgctctgatgactagatttacatccttcct
tttttgaggacagtgggacagcctaagtgttcagaaggcattgtcatacatggttttaataaaaaagtggatatctgagcctagataccatgtgcgagag
tctgtgggatgtgaaaagattgcacaaagacgaacccagtttaaggctcagcacgtgtgagtggaagatagtgctaccatggtgtgacctcagtgattgt
gcaccaattaattcctctaagctctgacaccccacaaaggaactcaaagtttcaggctctgctaaaataagacagacaatagcaagtgttggcaaagatg
tgaaa UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 63 426 113 NA intron
1214 chr12 82461698 82462001 RIP_Alu_chr12_082_02 0 + pAlu12-83892078 NA NA SINE Alu Yc1 tacaatagaagaaaatcatggacatcttaaatgggctaagggtttacattttaaatatgatggccatggtagaccacatttaaaggacatttgagaaaag
acttgaatgaggtaagaggattagcaatatgaaaataaggggaagggtagtctaggcagagggaatccagtgagccagttactcttctgatacctgcaaa
aagaggatgaaaattggtaattggtgaaaatacagatgggatttggggtagaatgtgttcatgcctagttttatcacagaataggaaacaaatttatcat
ttgaggatgagttgaagatatatgaaaattggtaaaacgtatgagagtcattgtgggaaagaaaatgggagccaactagggatacatAAGACTTGTACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAA
AAAAAGACTTGTACTCagcagggatttgggctgggaagagaataatttttcattttccaaaggatcattcgtgcagttgagcaattttctacaaaatgct
ttttggagtagacgtggctgagaagggggtgacatttgttcattacacactacctgtagcattttgtgggctgttctatattgcaaacactagtgtacaa
ttattagttttgcatatgaggtagcttagattcaaacagggtaagctggctgatgttaaacatattttcaggttgattttaggtgatgttatcatataat
aaggtaaaaatgctagaggaccatgctgatgaaagaacagatgataaaagtgttaatgtatacagacaagtgtgccaacaggtggtgatccaggggcagt
gaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1214 chr12 82544752 82545050 RIP_Alu_chr12_082_01 0 + 237938 NA NA SINE Alu Ya5 tgaagatgaaggcctttatgatgctctacctccacttaatagtaagtatattttctcttccttttttcttaacattttcttttcttcagcttactttatt
gtaaacatacagtatataatacttatataaaatatgtgttaattcactgtttatgtcatcagtgaggctgctagtcaatagtaggccattagttgtgata
ttttggtggaggcaaagttataaggggatattcacctgcatggagggttggtccacctaacccctgtgttgcccaagcatcaactgtatgttcaaatata
tgtatttttatttttatagtatgagttaattggttttggtattagttttcagagctgatataacaaaatatcatctgggtggcttAAAAAAAACAAATTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAACAAATTTattttctcacagttctagaatctggaagtctaagatcaaagtgtgggcaaagttgattctttttgaagactttttttggcttgcagg
tgaccagccaccttctccctgtgtcttttattgtcttccctctatgcatgtgtctgtgttccaatcatctcttcttataaggatatcagtcatattagat
taggtctcacactaatgactgtattttaacttaactacttatttaaggcctatatcgccaaatataatcacattctgaggtactaggggttaggactaaa
cataaattttgtggagatgaaattcagctcatcacagtcctcaattaatccttatctttataaaatcctaaagcaaaggaacctaaacctagaccaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1226 chr12 84120206 84120207 RIP_Alu_chr12_084_01 0 + pAlu12-85550686 NA NA SINE Alu Ya4 tatatctcatgcagtttatagaattgggaaatacctataaattatgagaggaaagtagcctatagtttagaagatttggggcaaatatataaatctatgc
ctacagaaaatgaaaattgccccttttgaaaacagagtagaaactaaaatcaaccaatggtcaggagaaaatatttgcaccagggataacagaaaaagaa
ttataaatagtcaaaaacaaaaaaggaaactagaatccagtagataattgaagaaaacaaaaaagatattttacaatgtacaaactaaaattattaaata
attataatgttccatttcactagcaaagatgtataaattaagaccataattagacagtattgttatcaaattatcagcagttTAAAAATATATGCTCTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA
ATAAAAAAAAATAAAAATAAAAATATATGCTCTCTtactgttgaccaggactcagtaaaataagcaatctcataaagtatgtaattggtgagacctttta
aaaccatttgacaatatagattatatcaaattctttaaaatatttatactattagatattttattcttaattccatcttttaaaatggattaattattta
tgcagacagcaaacatatgaaaaaaagctcatcatcactggtcattaaagaaatgcaaatcaaaaccacagtgagataccatctcacaccagttagaatg
gccatcattgaaaaatcaggaaacaacatcctggagaggatgtggagaaataggaacacttttacactgttggtgggagtgtaaattagttcaaccattg
tggaagacagtgtggca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1233 chr12 85025793 85026104 RIP_Alu_chr12_085_01 0 - pAlu12-86456173|17348 NA NA SINE Alu Ya5 attagtcagtactaaccaacattgtcaaagaaatgcatcttttataagactaaatttaaatgtttatatttttgatgaaaattatttgtttaaaaaccca
caggctcatgtgtcagctatcctttgggctgtaaaaataaaacaaaatcatttatctgcttttcagggaacataattccatcagtataggcaatcataga
tacttgtttaaaaacttcaacttaaatcctacataaccaactttcatcactcctcagagttaatgctctctatctcttagtaaaagtatcccaattccag
agtgtctcaggcatttttcacacagtgcatgtgctttatgttgtaggggtagactgatttgctaaagttggaacaggaattaaaagaagttAAAGATTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCGTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGATTGTgtaagcaaaaactcagttgtatgtaagcaaacccagttccccgtgaggaagagaaaaaggctggagtcctttaaaattaa
ctctctgtttttctctctgtggctagtgagccttatttctccctttcccaggcattgtgaagactgtttctctagctgtgcagctgcaaggtcactagac
agataatctcaagttgtaaaacatgttgttccttgaaaagtaataaataatgtaatgcatgtcttaattgaataactgtctttgtttctcacttctgtaa
tatgcttccccctgcacagatctccccccaccccacgaaatgcttaaaaggtagcttgactctttgttcggggctcagtcctttggatgttaatccgact
gggtcagtgca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1243 chr12 86373291 86373292 RIP_Alu_chr12_086_02 0 - pAlu12-87803763 NA NA SINE Alu Yc1 aaaagagagcaatatgtgtgatataaaatgtgacagtagcctgagggtgatgctgatattgctcctttcccatccggaacatgaactaatgacacacagg
ggctagaagctcagtcattcgagacaggcacactaaatagaaatgacacaagcaaatagttgaacaaaaatttcttgtaaagaaacgcattatcatctcc
aaatacttacagaaaaccaatattatgaaacagacctaagcttaaaaataataaaaaataaaacaggagaaataatattgaagaaatgcagttaatcagg
taaagttaaggaaagcttgaaatagaattaatatattcagaaagatgagagtatatgctagacagaaaatgcaaagaaatttgtagaatatAAGAAACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAACAGtattgaacaaatgcacctataagaatgaagaaaaaaatgaaaggaaaaaatgcaaggaggggaaagaataaagggaa
gaaaggaaaaaaaaggaaggaaggaggaagaaggaaagaagcagagatggagggatggaggaagaaagaaagaaaggaaaaaagagtgtttagttacatg
aaactaaaatcttaggtgttctcaaatcagcagttgatgttggatggagggagaagagcaaatgataccttctgtgtcctagtttgtgggtttataggta
taacctgcttctagattctaacaaaaaacattaaatattttgttagaaatatttatttacacagcaaaggtatattaggtggctaatatttggcaaactc
cattttaggtacta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1247 chr12 86840639 86840640 RIP_Alu_chr12_086_01 0 + 239047 NA NA SINE Alu Ya5 ggtgggttatttagaactttttaggaaaggggaaataacttctgggtcattgccatggaaagggttggtaacgtctatgttacaaatgccatggcatttg
taaactggcatggcattgggtgggagtgtcttatgctaatggacaataagggcagctatggatatcttccattgccatctgctggttcttgccagtttct
tcacttcatcctgttggaattaagaaataagtcctgttgatcctctacctcaataagatccaagaacaacctctttttaatattcgaggcactgtaaggc
agtggcatagtttatattctctaatggaaaaatagaaaactagaaaatagcaaaggtaaattctgactagagggagatatagaaatttaAAAAGAAAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAAAATGtatccttttgttgtaacatgtacaagttattttttaagatgtaacagctggaacctatagtacctaactccaggaacaatggtgactattttt
taatgttgaaggtgaaggaagagctatcacaaggcaaaaatccaaaaagtttctcagcacatgagtagcatcttccacggaccccttgggatccagaaga
ggtcaaatccctcagttatatattatagctccacgtagcttgctttatgacaaccacaaacatgcaatatattttgtggttattttatttgtgcctttca
cacctcctcaacagtaagcttcataagagcaggaacctgtttgttttggcttaccatttaatccccagtttctagcaaaggaattgacatataata Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1266 chr12 89348856 89349047 RIP_Alu_chr12_089_01 0 + Ya5ac2215|12732 TCACATTCTGCCAGTGTTCC CAACAATTCCTTGGTCCCTT SINE Alu Ya5 atgcatggcacttcatcttttaaagggcactttaataatttttctaaatcaatgcatgtaagagttaggtgttctcttcaagttcatcttaattttattg
aagaagaaacaggctcagatatgacagatgaattggcctggcttttcaaattttaagtaagttgacttttgattacagattcagaactcattcaattgga
caacatctgactcctagagacagacttcagaaactctgtagaaacccaaaccaaaactagcaagtgaaaatgtagcttctcttctttatgccttccatat
tctcacattctgccagtgttccactttttatattatacttatttgtttttgattcctggtttgcttcaattttaagataaagataatAGTAATAAAAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAATAGTAATAAA
AAATgtactatgagtatgaatcattaaatacaggattgaaaagccttatgtaaatatagttgctcttcaaataatctttaaatatttgtgaccatctact
gtcataaagggaccaaggaattgttgtaatataactgatttactgtgatttaagtgtgtaattgagtaacaaatgttctaaaatatgactgacagatttt
ttcagaataaactctgtgttgttcattttgttatagtcaattaaatttaaatgtattaaaagcggtttacctgatattaaactctaaactctatgttctg
gaaaatagacttcaaaaaacttcatatggtggtcaattacagatgttacaaataaactagactaatgggatacatttaaatgcaaaataca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping|Candidate screening NA 60 424 124 NA intergenic
1279 chr12 90967983 90968289 RIP_Alu_chr12_090_01 0 + Ya5ac2221 ACAGCGGGTAGGGAAACTCT TGGCTACATATGGGATGTGG SINE Alu Ya5 agtagattttctcctggggaaaccagtagcaatttatcttgttcttgctctactgctggcatacaggaggttgggcatttaatagacagtcatctgccag
taggaggtaataattgttttttagattaaaaacaaatgaaatatgaagggagttactgccatataggaggaattggagccaatgctcaagtagtcttgtc
tagagccaatgtaagaacttctgttggaaaactacacttttatgtatatgtatgagtttctgcatgtgcatgcatatgagtgctttagcgtcttgtagat
gtgtgcatgacagcgggtagggaaactctggaaaaatagccagtgaagacccaaagcaactcttattttctacactcacaagtactatAAGAGTTGGATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTTCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTTGGATCaatttcttgtgcttaaaattgggttttattttgtttatcttttccacatcccatatgtagccattttctaggaaaaaattac
actgatagcaacaaaataatttttcaaaatgtatataagaaacagtgcaatgtaagacatgtagaagagagccagaatatgccttggtggattgatgaga
atgctaagcaacgaaagacattcatgctgcaatctatacaactaagcagcctgaaacctcctccattattcaagtttgaattcagaaagaagacaatggc
cttattcagctccagtcaatcctagtgttatgcattgaattatttccccctaaaagttgttgacatgctaactcccaatacctgcaaatgtaactttact
tgaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 472 154 NA intron
1293 chr12 92860812 92861108 RIP_Alu_chr12_092_01 0 + Yc1RG189|963 CAAAATGACAAGGAGCCCATAG ACAGACTTAGTCCCAGGCATTC SINE Alu Yc1 tttcaaagtcactcccagattttagttatttgttatatagcatcccatttctaggtaccaaaatccatatcacttatttttgctatataacaaattaaca
cttagtggcttaaaacaacgtacatgtattatttcacagtttctgtgagtcaggaattttggagcagcttagcttggcagttctggctccaggtttcata
tgaagttgcagtcaagatgttggccaagacatgtacagaaaatagctatgggatcagaaccccagcctcccagatggaatccaggggaaaggccagttac
acagtctggacctcacagtgagggatgaatgggaaatcctcccctccaaaatgacaaggagcccataggccaagaattctgattAGAATTAGGAGCTGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAGTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
TTAGGAGCTGGGtcaggctctggccggcatagggaatgcctgggactaagtctgtgagtggcagaactttggtgcccaaagccaggcagggataggctca
cattaggagctgctgcatgacagccctctcagcatttggggttagttaccacataacataatattcaaattctttatccttcagtggcctttctccagcc
acgctctacttcatcaaagtccttctgattctgtggtagttaatgcctcaggcatagtctgtccagtgcagagaacagaggggccattaaacgcatccag
aaactacgcccaaggggcttatttctgggatgaatcaaacaaaaggagattgtcatgacaagaacttgggtaaggattgagaaatgtctctagatt UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 53 409 97 NA intergenic
1295 chr12 93171815 93172123 RIP_Alu_chr12_093_01 0 + Ya5ac2222 GTGTTAAGAGGCTGACCCCA GGATGGGTGGAAAAGAGGTA SINE Alu Ya5 tgctgagggtgatagtcactgatgggtgactgttgtcccacagatgatgcttttgtctctgaaatttatcatgaattatctgagaacaaggactatgtca
taacatctctctgacatcccagccctaatactaaatagggcaggagaacatgctggttaaatgggctttggtgggagtgtgggagccggagagatggcgc
ttccatcgaggtgtctcccccgatggggtacagtggctgagggcagacgctgtgatgtcacgctgtctgacatggcacaggcatctgctccccatcacag
agcagaggcccgcgtgcactttcccagcctgggggtggaggtgttaagaggctgaccccaagggccttgactgtacttacgccttAAGAAACTGCTGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAACTGCTGTTTgagcactaagtgttagcagcatgaaaaatgaacacatatcaatttatgtctgaatttactctcagaattccctgtgg
actctgtaaaatgccattttacctcttttccacccatccagctgtggaggcagtggcagatttacattattttacatccagttaagggtgttttttcttt
tggttatgtttttaaaaagaacatttattgcccataaaaaagtgtttttgttaaagacaatagtgcctttaggtagtaatagaatgctgtttcacaaata
tttataaaactattaaacaagctgagattgctgaagctccgattaaaaggtgcctcccattcatctttccctttagaaactgaagtagcttaactgcaat
tacccgcc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 499 176 NA intron
1300 chr12 93846536 93846834 RIP_Alu_chr12_093_02 0 - Ya5ac2227 AATTTCCCCAGACATAGCCC TGAGAAGCAAACTGTAAGCCAA SINE Alu Ya5 atttgtggggaggtgagctccttccctaggaaaaagaatgcaaagttataaatataaaattaagtatgaaattgaatattttacttaaaatgggaaaaga
aattatagcatgttacaaagttttaaaagctgacaaatagtacaaaaatccagaaaaataatatctttattattggactactcaacactctctttacact
tttctgtttttgtaattgcatacctccatgtgcttcttcacatgcaatgatttcgtaatatcattttctagagatagagaattcagtcttccctatagca
tggttgaatactcttcctttaaaatatttatatattagaaaagattttcagcctcagaactggctattggtaagtcatgtaaatttttAAAATTGTTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AATTGTTGCCaaatttgggaaactccacagaaaatttctttcatatatgaactgtaagacttcatgtacatttcaagttttctcacagagggactgatct
taagtattctgaattgatgaccttcattagccagtttgtcattggtaaccccattgaactggtggattatggtatcagtatttcatgttagataaaaaat
aaatagataatcaaacaatataaaagcctattctttgtttgaaagtcctttcttcctctaaatgagttagttactatactttgggtataatttgaaaaaa
aatatattttggcttacagtttgcttctcattgtcagaataatttccttccatccttccttccttccttcctttctctctctctgtctccctctctct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 1150 840 NA intergenic
1311 chr12 95207831 95207832 RIP_Alu_chr12_095_01 0 + 8929 NA NA SINE Alu Ya5 aaaaaaaaggtaatccaaaatagtaaaggcaaggcatttggcttttgtattcacaggctctaacatattatttcttagtgataagtaattgtaaagtttt
attgcagttgcaaagttacctacattgattatatgtaatatactcatggcaaaaacatttactgtaagcaaaagtatacagcgaagtgttacagaaatga
aattttgcaacctcagtaatttttgagtcctttcactggtaaattcaacttgaaatttactttaaatttattataccatatagtaacattaggcaaacac
taccacaaactctgtgatcagtttaaataactaaccaagtagacattatatgatcttgtatgcaacatggggaaagagaattgtaAGAAATGCCATTAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAANAAAAAAAAAAAA
AAAAAAGAAATGCCATTAACctttatttaattatacaatgtgagctgggataaacttgaaaagaatcttgcctatatcattgtatcaagaaatttaagcc
ctataaaaagaaattcctcccattcataacagcagccaaaccatgaaacggaatggagaggtataggaactgcataaatatttactgagaaatataagac
ttaagtataaaaacatacaatgccaccaaatggtaagaataagtaaggagaagatactggtcctccctatattaattttataagttatataaccactaag
aaatcacaataagcttattcttagaacaaaataaaatgcctaaaatgtatcaatagaataaacagaaaaaatccaaaaacattctaaaataagaaagagt
atatg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1317 chr12 96057209 96057523 RIP_Alu_chr12_096_01 0 - pAlu12-97487591|Ya5NBC147 TAGCTGGGGGAGGTAGATAATAAAC AAATATCACCTTATCAGTGGGACCT SINE Alu Ya5 ttacaatagcctcccatctcatctccttgccctataaagtctattttcctcacagaaaccagaaaaatccttcgaaaacataacttggatcatattactc
ctcaagaccctccaaagtcttccccatgtgtcctggagtaaccatctagccccactccttccatgatctcacaccctcctcactcccctcctcaccctgc
ttcagccctactgggttcttgttcttccttgagcaccagacaagctccccgcttctggcctttatacccactgtttctgtgaatggaatgctttctcaag
acatccatttgatttcctccctcattccctctagtctctgctcaaatatcaccttatcagtgggacctgccctcattatctcatttAAAACACCAAGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACACCAAGCTCcttgtccccatctctctctgcctccctacttgctttattttgcctcctaacatttgatgtataatatattta
ttaacatttatgtttattatctacctcccccagctagagtggaagctccctgagggcagaaaaattggttgaaacactgctttctccccagtacctagaa
taggcatgggcacatagtagacactcaagttgttgaagaagaagaaataaagccaagtcgaggtaccaggatacagtactggttgtgttgcattacatgt
atttgtttgcacagtcagagtttcaggctttgggagaaagagccctgtccctagtgtgtaataaagtgttcattcagcaggcttggagtgtttaaaccct
aaacattccagagg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate sequencing|Candidate screening|Genome comparison NA 0 0 0 NA intergenic
1322 chr12 96665870 96665871 RIP_Alu_chr12_096_02 0 - pAlu12-98096334 NA NA SINE Alu Yh9 attcaggtacaccccacaggctagcagtttagtaccagtttctagatgacaggagatgagtagacaaggagctgagcaagctatgggtgaagtccggaat
ccaataaaaatgggtaagttccaaggaaacaggaagttcacaattgcgcagatttcttctaatgctctcctcccagggcctaatgctatgggaatctctg
ctgtcgatgtcgggtacagtatgaaatggaagacatacagactctgcctttgtggtacttctgtacaagcaggaaagaaaaaattctaaggcactgtgat
ttaaaaaaaaaaacaaactacaggggctatggagaccaaacgggtagacctagacttggctgcagggttagaggaagtgtcttAAGAAAAGTATTGTTTA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGGT
GAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGAAAAGTATTGTTTAaactgagattgaaagtaggattaatgctggttcaggaaaaaagggaacagacactccaggaagagaatgttctggcgctcc
ccatatggataggtaagagttgtggctgggagcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacgaggtcaggagat
cgagaccatcctggctaacacagtgaaaccccatctctaataaaaatagaaaaaattagccggaagtggtggtgggcgcctgtagtcccagctactcggg
aggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcagagagagcaccactgcactccagcctgggcgaaagagtgagactctg
tc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1354 chr12 100816548 100816630 RIP_Alu_chr12_100_01 0 - 13652 NA NA SINE Alu Yb8 catgtgccaccacccccagctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgc
ccgcctcggcctcccaaagtgctgggattacagatgtgaaccaccacacctggcatacttttatttttaaaaaagatatatttactttgtattatttgga
actagtaagtgagacctcctaaaagaaaacaaccaggatacatgactattaacatcaaacagcagaggacatatgaaaatctcattggtgggagagctat
taaagatgcctcccattgggaataagctaacacatgaagttgcacaatccttacagatttttctcaaacacattaaggataaAAAAAGAAAGTGCTCTTT
GCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAAAGTGCTCTTT
ttaaaaatgcaaaatgtcttctgcaaatttttactaatcctaattgtccgcaatttaaaacatttgaattgataaacacctacctggaaatcttggatga
aagttaggaagtagaaaataaaaccaaaggccactgtccattcacagatcgcactcactacgtgatatacataatcctaatgcaataataaagaaacaga
atttagccgaaaaagactcactttaatgtacatactgaaatacaatgaggagtttcaaccaaaggaaaaagctgtccagtgagcataagtcagaactttg
aggatatacggtaagcacaaccacgttactaagtgtcagggcacctgcccactgagaatgcgaaggcaggtattccaaagtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1369 chr12 102795874 102796191 RIP_Alu_chr12_102_01 0 - pAlu12-104226260|14809 NA NA SINE Alu Ya5 gacagattgttcttgccaaaataaggagaaatgtttagaatcattttccaatactagtaacactgactttattgtcaacattattttcagaaaaaataat
tatagtcaccaaaaatgtgattttaaaaccactcaacatatatattttccttcatatataaagatatatatctataagcatcagccatgagtattttttt
ttttgcttagaattaatttttgctgattatattagtgctctatgctctgtgactgtcaggcagtatatacttcctgaggttcattcacattcaccttgtc
atttacactctatgccaaccgtgtggaagaggcagaggatccacacctctgtgggctctgacaggggctgcttgtgagccatctacacAAGAAATGGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA
AAAAAAAAAAAAAAAAAAAGAAATGGGGGccacacatggcttgaaaacaaatcattagaaaaaatagtattttaaaagctcctgatgatctgtgtgttca
cattcccttcacttctctgggcctcagtttcctcatctacaaaatgaagggtctggactagcctagatgatttccaagaaccccttctgctctaaaattc
tgtcgtttcagttctgaaatctcaacgatgcccataattttaaaggtttttaaataaaaactcaagggatgaatcatcagctgaatttctttctcttccc
tttcttgaaaatcatttttcattgtttgacataagctcaatctctatcttttctgacaccttcactttcttaatgtcccacattcataaaaaaagtttca
agtaatcgattttatga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1389 chr12 105393419 105393420 RIP_Alu_chr12_105_01 0 - Ya5-MLS34 CTTACCAGTACAAACAGCACTCCTC CAGGGAGGTGCTCACTTAATTTG SINE Alu Ya5 aaggaaaactttgcattatatgtaattgatgtgttccttaaaagtaggcatagggtagaaatcatattttggtaaattaaatcttttctactttatattt
tttgagacgaggtctcactatattgcccaggctagcctcaaactcctgggcgatccaccagctttggcctaccaaaaatctactttccaaattataatct
taccagtacaaacagcactcctcaattgttagttttctaaagttagattttcttgtatccagtttcttaaaaaaataaagcttaaggcatatagccttaa
tgcttacatcttaaggcaggggtgtccgatcttttggcttccctgggtcatacgggaagaagaagaattgtcttgggccacacataaaatacgcTAACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATACGTTAACACaaatgatagctgatgggctaaaaaaaaaaaaatttttttttttaaatcatgaaaaactctcataatgtttttaaaaaa
agtttacgaatttgtgtcagaccgcattcgaagccgtcctgggccacatgccgcccacgggctgtacaagcttgcctgaaggtatacttaatggagtata
ccttaaggctttgtctcccctatcctagtaaaaccattctttctctttaaaatagctcaatcgcatgcttaccctgtgatgccggatgtaacatagtctt
tccccaagcagttataaccatggcgaacgaggtcctcacacacatccttcactttactgcctccaaacgcagtgccgtagtggaatctgccgtccagcac
accggccttgccagcc Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
1512 chr12 121535231 121535548 RIP_Alu_chr12_121_01 0 - 19405|pAlu12-122818682 NA NA SINE Alu Ya5 ggcctgagaatttgcggtggagaaaggggctggggaagagaaagacgatcaggagtggtctctgaaaagtattgggtcaaaaaggcagtgtctgtaaagg
gtagtgtgggagaagagagcgacttgtagctatttttttttttgtacgctcaatgagatgcttctagttgcataatttcaattagtgttcgtccgtgtaa
accttattattgtgtattaacgagctaggaaggtattgctgaaagggagtgaaaattcaacttaaaaggttgtggaactaccaattctgactgatgcgcg
gtttccgaagtggcccgtgatgtaatcaatttgaagtccgagaagcgttacagttaagtcttgtcactgaccttgttcctttaaattAAACTCTTCGTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAACCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACTCTTCGTTGaccccagaggagctacagttcgtaaattatctattctgaacaataagcctgcgtgtgtataagataccca
attctgacggatccacattattttgtgcttacctcatttttattccgttaaaaggaaaatgtaaagattttgcattcctttttactgactaaaaaattac
atcattttcgataataattatgactcttaaacatagtgatagttttaaagtttgctcttcctaacgattggaatgcctgggattaggcagatgattttct
ttttcccccatacccctctattatttaggtgattgagtttaaacccgtttcttttactgtcttcctttgtttagtgttttgggcctcagtatacttaaag
agtaatactatttttct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1541 chr12 125429996 125430295 RIP_Alu_chr12_125_01 0 + Yb8NBC225|2166 GAGTCCAGCCCATTTTAGCA CATGATGGTTTGCTGCAACT SINE Alu Yb8 gcctcccgggttcaagcgattcttctgcctcagcctcccgggtagctgggattacaggcatgcaccaacacacccagataattttgtatttttagtagac
actgggtttctccatgttggccaggctggtcgcaaactccccacctcaggtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagcc
accgcgcccagctcaaattgcattttaaagactgcaagcaaaaattgctttatttgggagtttccattatgatgacacagcaaaaatctcagtgtatccc
ctacagtctggttcaacaccatccatctgactgagtccagcccattttagcatgggacattgagtatgttttcataactgttatcAAGAAGTATTTTTAT
GCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCGGGAGAAGGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAA
AGAAGTATTTTTATatgcttcacactaattaaaagatgataaagtttgatatgagaaattaaatgacatgtttgtgctgggtaatattccagtggcctct
tggcacataatatggttaatatttcattgtgttaaattagagaaggggttgtaagagagttgagtcactaaagcatgcccagggctctagactaactgaa
ctaaatatagcaaacaagcataatggcctcgaccacaatcatattgcaagcagtggacaagtttcagaaaaagcaatactattatcacatttaaattgaa
ctgaaattggtgtgcagttttgttttgcatttaatgtttaaatagatcttagttgtatacttctgtaagggcaataaacataagatatctattcccaat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 60 449 135 NA intergenic
1544 chr12 125724843 125725167 RIP_Alu_chr12_125_02 0 - pAlu12-126923812|Yb8AC749|14203 CACAGGGTCAAAAGTGCTCAATA CATCTCATGCTATGGTGTCTCAG SINE Alu Yb8 tagacgtggcttctgatttttggttgcaaatgggtttcctttcctctgttagagtttgcacaagttgttccctcttcatatagcagagaggagattctca
ttctaaagccagccagatcagagcaatgactgcactcccagtggagaatagtgttgggttcacacatgacaggatgtttctaggatttgcattcattttc
tctctgaaagactatgatctagcttcctaatcctctatagagtttgcaaagtgttctaaagaaactttccttccttcctcccttccctcccctcccctcc
cctctcttttcttctttcctccatctccctgcaaaatgttcacagggtcaaaagtgctcaataatggtttacagggtagacttttAAGAGAGAGACATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAGACATCCatattggctaaactaactaagcaccaactctgtgctgagcgctgctttaagagtcgtactt
tcatcgtcttatttaactacaacaacctctcattcttatttaacaacaatgaccttcctcattcccgttttagagatgaggaaagtaaagcttggtgctc
aagagcttgttcgatgtatacttagagagatagtggaagggctgggatctaaatcagacaggtccggctccaggtcccaagtgcctgagacaccatagca
tgagatgaagtgctaagatcacttcaagcatgatgcagggagggattggaggaaagtgatgtgagttacatttgcaccacagatgacttgcctgtggtgg
attactgtgccagggagattgttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 60 667 328 NA intergenic
1546 chr12 126027518 126027732 RIP_Alu_chr12_126_02 0 + pAlu12-127226481|Yb8AC737b AAGCTTGCAGTAAATGACAGAGG GTACTACCCCAACTCACTCATGG SINE Alu Yb8 tcagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaagtaccactgttacatggtaacaatttctctttgaggggtatcaaaagtgctgggcatcatcag
aagcaagatttgttgttaactggttgagggggattctccgtctttctccactgaataatctcaccacgagaaacttagtgcttctctttcttgttttttg
gggcagtgtatctggctgtagtaggagtgcggggtttccctaatgcttcatcttgtataaccgaacaacattaccaagacagtattttttatgcagcaat
cacaaggaatttcccaataaagcttgcagtaaatgacagaggaactctgctctacgatgactccagaaggaggctgcttgtgggtcAAGAACCCAGCTGC
CCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACC
CGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAACCCAGCTGCactttgagctgcaatcattccttccttcctttattccaaagactagccaatggctgagctcccaacaacctg
caccacggagatcaggatctcggaagggcagggaagtgtgggtgcagccatgagtgagttggggtagtaccaggagaagaggccttcaggttcagggcga
tcattacattctgtaagatctgtgctgtcagggagagcaggctccagctactccacctttttcattttagtgatacagaaactgagtccctgagatgaac
aatgaattaatcaaggtaatggagtttattttcaaagaattcagaatgattttcaaaaacaattcagatcatgttgctcctctcctcaaagtcttccaat
tgcttcttaactcc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Genome comparison|Candidate screening NA 60 451 223 NA intergenic
1547 chr12 126185322 126185632 RIP_Alu_chr12_126_01 0 + 668 NA NA SINE Alu Ya5 gaaacagagtcttgctcgtcatccaggctggagtgcagtggtgcaattttggctgactgcaccctctgtctccagagttcaagtgattcatgtgcctcag
cctccagagtagctgggactataggtgtgcaccaccatgctcagataatttttttgtatttttaatagagatgtggtttcaccatgttgcccagactggt
cttgaactcctaggctcgagtgatctgcctgtgtcggcctcccaaggtgctgggattacgggcatgacccactgcacctggccatatttttaatatttta
atctgaacaatttagaatagaatatagagaaaacataaagaggaagagatatgaatttaagtgggtatatttcattggacgagtAAAAACTCATTGCTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACTCATTGCTTCaggtcagtggacatcgtacctatcatcacagatttcttggtcaaagtggcacccaccccaagacttacgtaagt
gtttctattggtcaagtgcagtagttcacacctgtattcccaatattttgggaggccaagttaggagaatcacttgaggccaggaatttgagacgagtat
aggcaacataacaagaccccatctctaaaaaaaaaaagaaaatagcaaaattagctggacaaggtggttcatgcctatagcctcagctactctgcaggct
gaggtgggaagattgcttgagcctagaagttcaaggctgcagtaagctgtgattataccactgcaccccagcctgggtgacagagtaaggccttgtctca
ataaataaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1557 chr12 127457135 127457421 RIP_Alu_chr12_127_01 0 - Yb8AC1695 TTCAGAAATGGGAGAATGCG GTTTGGCCTTCATAAGCGAG SINE Alu Yb8 gacctcagacaaatgagtgagcccggccaagagcagaagacctgcccagcggagcacagcacaaatgacagacacggaattgcaaggtaaagaaatagtt
gttgctctaagtcatgtggttttcggagtggtttgttaggcaaaaagctgcataacagttcagtagctatatcattagggttcaaatcccagctccacca
actactagttatgtgattttgaaacagtgatgtaaccttcaatgcctcccaccaattttcaccagtgacaacaacaacaaaaaaaattgtcttactttta
ccacatctaacattcagcaggttatttgtttcagaaatgggagaatgcggtgggatcgttttaggaattatattactatgcttttctAAAAAGCACTTGA
CCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAA
AAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGC
CGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACTTGAa
ataatatcatacgtctaggagtgtggtgactctgactcttactcgcttatgaaggccaaacgttaaatgagaaattcagtgagccagttggcaatttgaa
attaatcatagtgggagtatttacacctgagaaatgggcaaatgctatgcataagggtttctattttcccctccctgaagagcaggttgttaaatattga
ccagaaaacctctgtatgccttccttatatactaatcaaggcaacaggtatagccttttctttcataaacatttgttttagaacctcagcatccatttcc
ttccctgatggcaccaaattattttcagggaattacctcttgcctgttgtataacgtcttgataagacagtaattttaagggaccg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 434 133 NA intron
1564 chr12 128365577 128365881 RIP_Alu_chr12_128_01 0 - pAlu12-129579553|Ya5ac2130 ATTGCCAGAAGCTTTCGTGT TTCCCTGAGCATTTACTGGG SINE Alu Ya5 gtctcactctttcacccaggctggagtgcagtggcacaatctcagctcactgctgccttgacctcccaggctcaagcgatcctcccacctcagcttcatg
agtagctaggactacaggcacacaccaccatgcctggctaatttttgtatttttattttatttatttatttatttatttatttatttatttatttattta
ttgtagagacagggtttcaccatgttgtccggaatagtctccaactcctggggtcaagcagccctcccgcctaggcctcccaaagtgttaggattacagg
catgagtcaccgagcccggcctcgtttcttatttattgccagaagctttcgtgtagcatttgttaattgacttcggcatccgccttactttAAAAATCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAATCCCttcagtttctctagaagcagactgtgagattgggatttgtgtgcaactgatttatgaaggaagcgcttccaggagaacccagtaaat
gctcagggaaagtacgacgggaatgggtggagaacccaaatgaagtttcagatgaaatcgcgtgcagggtagcttcaccctgatcccgtcgggggtggct
ctggagggcaagcgatcctgctgcctttgataccccagctagaggcacaggagcagggctgtcacctccagcatcggactctgcgtgagggcccctccaa
gggccaggaactctcaggcactttaggctctttgcgcttgtgggcaaggagacttcagaaactaaaaagagtcatcaaggaaagttgcaggtacagattg
ttaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 55 476 163 NA intron
1566 chr12 128585183 128585498 RIP_Alu_chr12_128_02 0 - 449 NA NA SINE Alu Ya5 gcatatatgtttatacacacctatacacatacttatagacacacatatacaaatatatacatatatatattctgttgttctgtttctctggagaaccctg
atacagtcaccattttcatggagctcattctgtgaatctattttaattacaaatccagataattattaattgtaaaacgttatagtaagaaaaacccaag
caacacttaagaagaaattgctacagtttcaacccacaccatttggagttaatttttcgggcagcattatcgcggagatggtcagtgtaggtagagggta
tgcaaagagaaagcggagcttgcatgcaaagacgcatgggccgaaattggctcccacatgtgaggactggcctggaaaatacttAAAATGTATCTATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATGTATCTATCTGcagacataattgaattaaccatccacaaatctacaggtttcattccagaaaaaattcattccagaaaaa
cggaatttttgtctttcattaaaaagtccaatctgaccactaggcccgcgtttctccttggtagcaattggtctgagctttctggcatttacggatttta
gcaaggcaggacttctcagtctggcacatggacgcagcgctcactgccttctctttgatacccggtttgtttaccttaccaaccggccccggtaatcact
tcaggtttgaccattgcagtcaaggatatcttcacattatttagtgagagatgtctaacaccagcatgcaagcgagtggcaataaattatttcagcagac
agccgctggggagcc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1576 chr12 129949090 129949104 RIP_Alu_chr12_129_01 0 - pAlu12-131163186 NA NA SINE Alu Yc2 ctgaacaatagagaaaaattattaaaagaaaaacagtagaatatcagggacctctgggacaataaacacagcctaacatttatgtcttcgatattctggt
agaagaggagagagtgtggggctaagacaatctttttaagtaataataaccgtaaactttgcaagttcaataaaaaacataaacctacatactcaaaagc
tgagcaaatcccaaacaaaaatccatgcccagagacatcataatcaaactgcggaaaactaaaggcaaaggaaaagtagcaaaagtaggcagagaaaaag
agcacattacctataggcagacactatttaaaataactgaagatttctcatcagaaaccatggaggcaagaaaaaaaacatttttcaaaaaCTAAAATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAACACTAAAATAAaataactatcaacccagaagtctacatccagcaaaaatattcctcaggaagaccagacacggcggctcacacctgtaatcccagca
ctttgggaggccaaggcgggcagatcacaaggtccaggagattgagaccatcctggctaacatggtgaaaccccgtctctactgaaaatacaaaaaaatt
agccgggtgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtaaacctggaaggcggagcttgcagtgaggggaga
tcatgccactgcactccagcctgggcaacagaccaagactctgtctcaaaaaaaaaaaaaatatatatatatatatatattcttcaggaagatgataaaa
tgaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
722 chr13 18076188 18076464 RIP_Alu_chr13_018_01 0 + Yb8AC1667 TGTGGGACACCAACAAAAGA GGGCACTTTGACCATCCTAA SINE Alu Yb8 tgtcagcaactgaacttaaagacatacagatgaacgatctggcaggcaaagaattcaaaatggctgttttaagaagagcctgaacactgagaaagcagag
acacaattcagaaatgtaccagagaaattcaacaaagaaatcaaaataatgggaaaaatcacatgtaaatcctggagcagcaaagttcaatggacacttt
gaaaatccaatggaaggcatcaacagaagaactgatcaagcagaagaaagaaacagtgagctcaaagacaggctctttgaaaatacatggtcagagtaga
atgaaaagaaacaaagaaagtttatgagatttgtgggacaccaacaaaagagcaaatctacatatcattggtgttaaaggggaactAAGAATGCAAAAGA
GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAG
ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAATGCAAAAGAgatagtttat
tcaaagaaataacagaaaactttttaaatctggagaaagattaaaatgtttaggatggtcaaagtgcccaatcatatttaatctgaataagacaaccaaa
gacatattataattaaactctcaaaggtcaaagacaaagagaagaccctgaaaggactaagaaaaaggaaacaacacataagagaattccaatatgcctg
gcagcagacttgtcagcagaaacactacaggccaggagagagtaggataatagattcaagtgctgaattaaaaaaactgtcaaccatgaataaactatcc
agcatagctatcatttagaaataaaggagagattgaaacattctcagacaaacaaaaagcaaaggaattcactgta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 438 148 NA intergenic
725 chr13 18374810 18375098 RIP_Alu_chr13_018_02 0 - pAlu13-18406708 NA NA SINE Alu Ya5a2 ttgtattaaccccttgcctgatgcatagtttgcaaatactttcttccgttctctggattgtttcttcattctattgatggctttctctactttgcagaag
cgtttaagtttaatgcaattgcattttgtctatttttgctttttgttgcttgtgtttttgatgtgtatttgaaaatcccttgtcctaaccaatttcatga
ggcattttgctgttttcttctctagtagtttcatagtttcatgtcctacatttaaatctttattttcagtagatggtaagataacagcctcgatgtattc
ttgtacatgtgggtgttgggttttcctagcacagtttattgaagagattgtccttcccgaatgtgtgtttttggtgcctttgttaaAAGAGTTGACTGTA
CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTA
AAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT
TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTGACTG
TAaaagcttgaatttatttctgagttctctattctgtttcatttgtctatgtctgtctgtcattcgtctatgtatctctgtctgtctctctctgtctgtc
ccctacctattttttttctttggccactaccatgctgttttggttactagatttgtggtatattttgaaatcaggtagtgtgatgcctccagcttttttc
tttttattcaagattcttttgtctatctgaggtattttgcatttccatgtgaattttaggattttttttttttttttttttttttttttgagacggagtc
tcgttctgtcgcccaggctggagtgcattggcgcgatctcggctcactgaaagcactgcttcctgagttcaggcgattctcctgcctc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
742 chr13 20628917 20629223 RIP_Alu_chr13_020_01 0 + pAlu13-20660817|20606 NA NA SINE Alu Yb8 gatgtaaaacgaatgctcaaaaggaaggtcatcaattataaaaattatgaaaggagaacatgaagtatcagctataattttttcatgcataaaggggtga
tatagtaaatataaggcttccttccttttacaaagaaataaggagagatgaagcaaccatagggaagtggaaactatataattttcataaagacagaaga
tgctccttcttcatgcaatttattatatcttccagaaaagcagaaaagacagagaaaaaaggataacaagtactttattgatatcctagcatgagtcagt
tctaatggcatctgagtattttccgaagtgatttatccttctcatgggtctccataagtcaggaagacttctagaatggctattAAGAATTCCACACGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAACA
AAAAAAAAGAATTCCACACGTGtaagtaataattgccaaacactgtaactcctattaaggagggggactgtcaaagaatcagactggttatttagaattg
gcagttgttataagtcattagtaggccaatggtaactgctgttaaatactaaagaatcagatacagtcaggcatcacttaacaatagggatacattctga
gaaatgcattaggtgatttcatcatgtgtgaacatcacagtacttacacaaacctagatggtataccctaccacacacctaggctatatggtatagacta
ttgctcctaggctacaaacctgtacagcatgtaactgtcctgaatagtgcaggcacttgctacacagtgataagcacttgtgtatctaaacacagaaaat
gtacag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
745 chr13 21086494 21086495 RIP_Alu_chr13_021_03 0 + pAlu13-21118494 NA NA SINE Alu Ya4b accttcctccatgccccgcctcttcatcttctgcagggctcttagaggccatgcatgccagcaggcatagctagggtaggtctcttgttgacggagagct
gctgaggagaaacacacaatctacatttcactgactttcttgtgttaagagactgagatttttgtggttggttgtcacagcagctggcatggattacctt
gactaatacactggctatctattaatattccctatgtaaattctccaatgcagctctcaattatttactgtctatcattgccatcactttgaagaacatt
gtacagcaaaatgaaacccaatattatattattaaaagactgttgttgaggctttagctcagtaagccatattgcatgccctgatAAGAATCAATAGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGTTTTGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGAACATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAATCAATAGGGGaagtttctcttagttctagtgataataaaagacccctcaccttgtacccagcctgctcttttggacactctgcatcttggttgt
gatcatgttttcctcagttctgactctgtggctcatgtctagtaattgtgtgggctttctgatctgcattattctagttttctacctttgttttcctgcg
acaccacaatttcttgctaaaaaataaaaacaattccttttttaggtgtttattcaaatgtctcaaatattttttggtaaagaagctgatataaagatat
tttaaaatatgtagacttttatcattttgttttatttatttatttttttgagacggagtcctgtgcttcttgcccaggctggagtgcaatggggggatct
c Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
748 chr13 21421531 21421848 RIP_Alu_chr13_021_02 0 - pAlu13-21453430|Yb8AC1648|14345 TGCAATGGGCATCAAGATT GGAGGTTCTGTGGTTGAGGA SINE Alu Yb8 attagtgatattaatcattgtcagtttatttttcctcctattttttatttggttaggtgctgacatgtataagctttaagtaaatggaacgtccacttgt
attttattgcttgtcacaaaccctcaaaccacagcaacagtcacagtttatgttagaaacagcaaaatcgatgtgaattctggacttgacagtgacagat
ggaggcccttatgcagatgtgctcgctgcttcgcaggacttgaggtccttgggaattctgtgtgttatttgtgagacaggtgactcggaaggcagtgtgc
ccaggcagcagctcccctccagctcccacccacaggactgcagcactcggctcatttgcaatgggcatcaagattgactttctttAAGAAGTAAACCCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAAAATA
AAATAAAATAAAATAAAAAGAAGTAAACCCAGaaacatagaagcctgtggctatgtatcaactgccttcagggtttccgcagtctgtcctcaaccacaga
acctcccaggggaggtaaaagctgagctcatggctgggaaccagaacaggagcctcacgcagtcccagaactgctgggtgacacctggtaagtctcatct
ccctttgggacctggtctcctcctccaaaaatagtcagtagttcctacaatgcacattttaaggttttcatgctcaaaaaacatctgtgagcacttacta
tttactgggagctgagtgacggtagggccatgtgttctcactggggaagccatccaacacactcccttccaggtaccatcctctcacacctgaaaccctc
cacatatccgaggagga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 60 450 118 NA intergenic
752 chr13 21953218 21953513 RIP_Alu_chr13_021_01 0 - Ya5ac2259|pAlu13-21985103 CCCGAAGTGCTCCATTAGAA CCATGCATAATGTTCAGGGC SINE Alu Ya5 atcacctcccatggggccccacctccaatactgggtattacaattcaacatgagatttggaggggacatccaaacctgatcaggtgccctgcctcctcac
taactcaaccccccttttccttttactgtcactagttggtttctttgggccattctctttagtaaaagggaattgaagatcacaccaggaagagactgta
gtaactggaactaagtgaacacataatatgtaaagtaaagcaaaggagatatttcagacagaatttgttaggacctaatgtggaaaagctgaagtaggac
aagagcctctctaagatggcatatatatggcttacttactaaactctatctttaattcccgaagtgctccattagaagtcctggattAAAAAAAAAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAaatagctcactagccctgaacattatgcatggtattgtattaggtaattcctcaaaattaaagattaaattccaacttacttttcaaagaat
aattatacctctgtcatattgattggtttacatgattgtcaagtgtaatatgtcatttaagttaattaaatatccatttctacttcatcatgcattttta
tcaattaaaggcattgtactttaatctccacaaatacacaactgttggattccataacaaggttcagttatgattttcatgtatgacttgcatttcagtc
ttccttactaaattgagagtactccaaaagaaaaaaaaaatttgtatttccaaaatccaagatgttagctaaaataatgtaatacttaatgaata UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 383 75 NA intergenic
756 chr13 22455673 22455984 RIP_Alu_chr13_022_03 0 - Yb8NBC592 GCCATGGGGTAGGTTAGTGA GAAATTGCTGACGCACACAC SINE Alu Yb8 gcagatgttcatagctctgggaatggaatgcgacccttgtggagagcctataaacggacgcatggggggtgcttgcccatacagataagttagggctata
aatgccctcatcttgccacggctcttctaggtctctttagggttaaggcatactcccttctgagaatttctggtctaacaggctgtctagcctcacatcc
tgtttctatggattgtgtgtaaccagcttttgctgcaactgttactgctgattaatatcttgctaatcatagtttatggataggctgtgtttatgtttta
aggctctgttagaaattgctgacgcacacactatattgtaaattcttatcactgtatactgtacttctgcataccgatgttatgttAAAGAATTACTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAATTACTTCAtccccatgtgatcatttcatctcataatcaaatgaccctaaatccctcactaacctaccccatggcgacaactgg
tcctgggttccctgctgctggtgggggagggcaggatcaggggttgccactgatactgactactgccatttccaggtggcagctgtggctgagcccacgg
cagtggctggcagggttacttccagagggccggagggtcgccaagtgtaccgctctcccatgctagggtccaatttctcttggccctggcccagagcaca
ggtttgcaggggcactgtgcagccgcagggttgtgactgctcgcctcctgccctcccgcacctgcgggctgaccgtggcagtgtctggtcctgggttcca
tgctatggggg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 480 155 NA intron
760 chr13 22955656 22955973 RIP_Alu_chr13_022_01 0 - 238197|pAlu13-22987554 NA NA SINE Alu Yb8 aagaagtcttatctgagattcctcttatggaacaaagttccatcaaagccaatttaaaagcctatgtaaaaataataattatttttgctgcactgcatac
aaatacttaggccaagtataataaccaaaccagccctaccatgatttatctttagtaaaatggggaactggagagagaaaaaaattatttcaaaatgatt
atatatctgttgttagattctagtcttgcctaatgtttttttccaatttttattattttctacagtttggaccaaattctaatttttcttggctacaagt
cttcaaaataatgttttcaatttttttccgtctctttttcatttttcctaatttgaagtcactgaaaactaagttgttcttctttAAAACCCTGCAAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAACCCTGCAAGCTgaagacagacaacttaaacttcggcagaaaataacagtaacctgtttacatacataaggcactttcat
gcctgcctactaatgtatggacttcagagtaatgtggcccatatcaaattttttttttgagaaagggtatctatcactctgtcacccaggctggagtgca
gtgatgcgatcttggctcactgaaacctccgcctcctgggttcaagcgattctccttcctcagcctcagaaatttgagacaggtctcagtctcaaatttc
tgaggctcacactcctatgcaaggaaggaaggcaacatgttttctaatgccacatgaaattaaagcacaaaatgaaacttggatgcttgaaagaacagac
tttctgtaagttattgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
760 chr13 22967368 22967660 RIP_Alu_chr13_022_02 0 + 14819 NA NA SINE Alu Ye5 tcctgggatctttaaacagccagagtaaagaaggcatccaagaagtttcttcatttcccctttccttaaaagtcaaacatttggactggacacggtggct
cacacctgtaatcccagcacttttggaggccaaggtgggtggattacctgaggtcgggagttcaagaccagcctggccaacatggggaaagcacatctct
gctaaaaatacaaaaattagctggaagtggtggtacgtgcctgtaaacccagctacttgggaggctgaggcaggagaacctgggagatggaggttgtggt
gagccgagattacaccattgcactccagcctgggcaacagagcgaggctctgtctcaaaaaaaataaataaataaaataaaagttAAACATTGGAGTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCGCTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACATTG
GAGTTCCataaaaagtcaacaaagaaaatgagggaagggactcctcaaagaaataatgtaacaaaatctctcagaacgaagagtcatgagattccagatg
gaaagagccagccaagtagccacgcaatttaagagcaccatcataccagggcactttgtccgaaattttcagaattccaggacaaagagaagaggtttaa
aacttctaaaggtaagaaaaaagaaattccatgtaacttcagagatctcaacagcagtagtggaagccagaaggcaatggaacagtggcttttaaaattt
taaaggaaaatgttttccatcttaaaattacataagcccaactgtaaatcaagcatgaggacatataatggcatttttaaatgtacaagttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
765 chr13 23608967 23609268 RIP_Alu_chr13_023_01 0 - Ya5ac2272 GCCCAAAGGGGTGAAATAAT TTTGGATGCAACAAGTCTGAA SINE Alu Ya5 cctcagcctcccaaagtgctggatcacatgggtgtgagccactgcccatggacttagttacttcttgatattatgtaagcagaatgtaaagaaggttgta
agtatttttagttttctgtatattatggtgttttgacatcttaaaaatcctttctggctgaagagagactgcccctttctggactagtaaattcttagag
acagcaaaggcccagccaggagcaggcccctggcaaacccagggctggagcccatgtcttcttctttcagttcagtggcctttcaccccaactgaagccc
aaaggggtgaaataattttgccaagttcacacagtgactaccagatgtcaacacctgtctctaatgcatgtgaccttatctctcataAAAATAAAGAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAATAAA
TAAAATAAAGAACAtatttaatcaaatttgcatccacaattcagacttgttgcatccaaatccatttatccattcacactccttaaatatttcctgtggg
cctactatgtgccagtcttgtgctggggcctatctctcagagcccaataggcccagagaatccacaacgttggtgaacatcgtggccccaaagctgagcc
catcaaattagctttggaaagtctatatacagaattcatctgacagttttttctgagcatttcctagttctctttctttcctttctttccctccctccct
ctctttttctctctccctctctctcactttctttctttcttctctttctttttttgactaagtttcactcttgttacccaggctggagtgcaatggcacg
a UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 464 150 NA intergenic
769 chr13 24168562 24168883 RIP_Alu_chr13_024_01 0 + pAlu13-24200462|Yb8AC1674 CTGAAGCTCCATCTCCCAAG GAACTCACACAGCCCCTCTC SINE Alu Yb8 agaaaccacatctcttacgtaaaaccaaagtgaaaatagagtgcgcaacagtcctaaaagactgttttaggatgagtattattatactaataatactagt
gataataggagctattctgtgctaatttccacaagtattaaattattcattcgcacgacaacactgtggggtggctagaggatgaggaggttgaggtgcc
gcgcatcagtgcacagtgtgaagatggggttagatgatgcctccatcagcagcaggacttggagccctgctgaagctccatctcccaaggtaaaggcatg
cccagttgcaaaagggagaaaaagcaggttccatgaggcctcatgtacaagttggaggagaaagtggctacacagagtgggactAGAAAGGGGAGAGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAGGGGAGAGGGGctgtgtgagttcctgctgaagaggtcggaggtgctgtctggatgctgttagggtcattttata
tctacacatgagcggtgctcagcctcaccagggctttagatgtcatggccttggaaggagacgtctctgcgggaaggaaataaaatggaaagcctgtgtc
ttattgattagaatggtgatgccccaaacacactggtctgttaagacatttgaaacagtttacggcaaattggaaaatgttttataaagttttatataaa
gatgaatgtatttaatttaaaagattatcctttgtagccaccatgattaagggcagggactctggagcctgctagcctgggctcaaatcccagctcagcc
accagatagccacctattgct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Genome comparison|Candidate screening NA 60 480 143 NA intron
804 chr13 28789572 28789874 RIP_Alu_chr13_028_01 0 - pAlu13-28821469|52564 NA NA SINE Alu Ya5 acagactttatcccctaagtatctgaagttttccctccacttgcctgtgaaagcacatgccacggggctgaccctgccctggccccacagatcagctccc
acacagggaacacgaggattgcagacgcagacggagcaaagcaagaagagggaaaagcaaaggtggccacaacgcaagtgatgataatcactccagtgta
actggaaggaggtgaacagaaaacatgaatgatgtaatcagaaaagacagattctgatgccatttgtaagatgaattgaatgggaacagttcaaggtagg
atttatagggattggatagaatgaagaaaggaaacattatctcgatcagaatatatcaaataaaagaggaaacctggatgagttataaactAAAGAGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAGAGAGAgagagagcgcgcgcacaagcgaactcaggagagttagatgcaaggactagaggaaaggaaatcagttttcagctgccaatagtaatttt
ttaaatattaagaggaatatctgatattgaggcactaaagttaataggagaaacaatctgaatactgggaaggtggattttaacctatttaaggtttgtt
ccatttcaacacacatgtactgcatgcatgaaggtagaaattgtagctaggaatttaagggagaatagggaggtttctgtattcaaatagaggcctagaa
aaattaggcctccattagaagcctaattattacctggataagactaagggataattaattctgaagattattatgaaaagataaggacagaagagtgaac
aa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
805 chr13 28852771 28853081 RIP_Alu_chr13_028_02 0 + 30989 NA NA SINE Alu Yb8 tagagacaccttccattggggaacactggctcagaacagccaacactgacccttatgccagacagccgtgaatctcagtgacattacagaatagtttcag
actgtaaactcccttgtgctactgtgaattttgttatttgaagcaacatatgtaaacacttgcttcatctttaaagacaaatagtttgaagtggggagtt
cccaagaagaagaggattcctctgccctactcatttctctgggggtttgacttggcataaccagtgagtcgtgatgtgttgattgtctcactaacttcca
ttcctaatagattgaattgttcagctagaagaaggaacacacgagaggagatgggttcatgggtcagtccctttatcagtgaagatAAAAGACATCAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGACATCAGCTttggctgctgactctcatgctggagggcagctgtgactgtcagcttgtgcatgcccctctaggaaaatctacattg
attttaggaggatgatgctgtagcaagggaagaaagaggtggaacaacccaaatgagacttgaagctgcctaggatcctttctgcagctgggaacctaca
gctgggctctcaggggcatgtatctgggcttctgcccagatacagatgctggtattgaggaggagagaggaagctctgtgccaggaaaaaacttaggaca
gataaagtagactagatagagtgagaagaaagtttgcaactgtggcaagcaaaggaggaaaatgcccaaaattcccaacacaataaagcaaggtttgata
ttgtgtaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
814 chr13 30073597 30073920 RIP_Alu_chr13_030_01 0 + Ya5ac2268|Ya5-MLS12|pAlu13-30105500 GGGCCTGTGGTCAAACTACT CAGTTCTGCTGCATTCTACCA SINE Alu Ya5 cactgatcaatgtactttgtaatctccgccacccttaagaaggttctttataatttcccccacccttaagaaggttctttgtaattctccccacccttga
gaatgtaatttgtgagatccaccgctgcccgcaaaacattgctcttaacttcaccacctatcccaaaacctataagaagtaatgataatccaccaccctt
tgctgactctcttttctgactcagcccgcctgcacccaggtgaaataaatagccatgttgctcacacaaagcctgtttggtgtctcttcacatggacacg
catgaaagaaaccctacctggttctgtgtcttacctgttgggggcctgtggtcaaactactagtacggagttttagtgtcctcactttAAAAATGAGGGT
TGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATGAGGGTtgtaaggtaactacctactttttatagcattgtagtgaagttgaaatgaattaatccacatatat
tatagtgtggtagaatgcagcagaactgatgatgtatgacttctaagactagtccttaagagacctgcagtttttgcttttgccctcttggaacactcct
gttgccatgttaagaaaaactctggggagactatgaaggaagagagcatactcggggcaggggggtgaacaggacgtgcacatgtacgagcgtacaagcc
aggtgacaccagtaccacagcctcagacatgtcaccggggataccagcaccacagcctcagacatgtcaccggggacaccagcaccacagcctcagacat
gtcaccggggacaccagcaccac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Selective PCR with subtractive hybridization|Genome comparison|Candidate screening NA 60 487 152 NA intergenic
827 chr13 31791297 31791298 RIP_Alu_chr13_031_02 0 + BRCA2|c.156_157insAlu ATGCCTATTGGATCCAAAGAG CACATTCATCAGCGTTTGCTTC SINE Alu Ya5 ttaatgtgaatagtttttgattccgaaccatgaataataagaaaataaataaaatttaaatgaaaataaaagctaatatatacagcttttaataatatag
ttaaatgccatcttgtaacttttgtgaactcttgttacacctttctatagattcgcaagagaatggattaatgatcttgtttaattaatatgccttaaca
aaagtaatccatagtcaagatcttaagcatttttttccttatgatctttaactgttctgggtcacaaatttgtctgtcactggttaaaactaaggtggga
ttttttttttaaatagatttaggaccaataagtcttaattggtttgaagaactttcttcagaagctccaccctataattctgaacctgcagAAGAATCTG
TGCCGGGCTCGGTCGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGACACCATCCCGGCTGAAACGG
TGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGCGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCCTCANNNNNNNNNNAAGAATCT
Gaacataaaaacaacaattacgaaccaaacctatttaaaactccacaaaggaaaccatcttataatcagctggcttcaactccaataatattcaaagagc
aagggctgactctgccgctgtaccaatctcctgtaaaagaattagataaattcaaattagacttaggtaagtaatgcaatatggtagactggggagaact
acaaactaggaatttaggcaaacctgtgttaaaatcttagctcattcattaattgtgtcatgctgggcaaatcagtctctctggcctctttttcctcact
cgaaaaatggagacgatgaaaataatgtctcataggtttggattaaattaaataatgtaggtacttagtaaatgttctctttcatccctcct Other - Teugels E, De Brakeleer S, Goelen G, Lissens W, Sermijn E, De Greve J. De novo Alu element insertions targeted to a sequence common to the BRCA1 and BRCA2 genes. Hum Mutat. 2005 Aug 8;26(3):284 [Epub ahead of print]PMID: 16088935.
Mutation Screening NA 59 0 0 Breast cancer exon
828 chr13 31851499 31851500 RIP_Alu_chr13_031_01 0 + BRCA2 GTGCACTAACAAGACAGCAA TAGATTTTGAAGTTGCAAGATG SINE Alu Yc1 ttacctaccccatggactgttgtgaagattaaatgaattagtacatttactacacatagatctatttctcaaaataatgagcattcagatattagccatc
tgtaatgtagttggtgatgattatgattattagagtacatttataattggaggatcatttttgccgtagggaaatagaattattaatagtttgaggcacc
tgagaatattatgtgagaaactgattacattaaccacacccttaagatgagctctaattttgttgtatttgtcctgtttaaagccatctagttacaatag
atggaacttttttgttctgattgctttttattccaatatcttaaatggtcacagggttatttcagtgaagagcagttaagagccttgaataaTCACAGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCACAGGCaaatgttgaatgataagaaacaagctcagatccagttggaaattagg
aaggccatggaatctgctgaacaaaaggaacaaggtttatcaagggatgtcacaaccgtgtggaagttgcgtattgtaagctattcaaaaaaagaaaaag
attcaggtaagtatgtaaatgctttgtttttatcagttttattaacttaaaaaatgaccttactaacaaaatgattataaatccagataaagtataaagt
tagtttatatcagagaagcaaaatccactactaatgcccacaaagagataatataaaagaggatctgtatttattttgaaacaaacatttaaatgataat
cacttcttccattgcatctttctcatctaaatgttgaatgataag Other - Miki Y, Katagiri T, Kasumi F, Yoshimoto T, Nakamura Y.Mutation analysis in the BRCA2 gene in primary breast cancers.Nat Genet. 1996 Jun;13(2):245-7.PMID: 8640237.
PCR-SSCP NA 60 0 0 Breast Cancer exon
854 chr13 35336420 35336722 RIP_Alu_chr13_035_01 0 + Ya5ac2247 TAAGCTTCTGAAGGGCAGGA GTTTTTATTTCCATTTAGATAGCCA SINE Alu Ya5 aaaagtaaaatttaaatagcatgaataaaaagacttcaggatttctggagtaacatagaagtaagttttaaggctgggtgttcagaatggtgcttcgtca
tggtagatgctcattaactgagccatttgggttttccttctttcaaatgtttgcccttgcatctccagcacccaacgttgccggtccactatagattctc
aatgcatactgaatgaatgaatggttgttgccatgaatgtttctactctataagcttctgaagggcaggaaagtacattatctcatattggaattgaaag
gtgtgaggcactcattgggcctcagttatgtctgctaagggttccacagacagagattctaaatacagggtatcattctatgatAAAAAGTTGGCTATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGTTGGCTATCTaaatggaaataaaaactgtaaaacaaacaaaaaaactccatttttcttctctcttttttttttttttttggaatggggtctc
actctggcatccaagctggagtgcagtggtgtgatcatggctgactttagcctcaaactcctaggctcaagacttcatgtcacctcagcctcccaagtag
ctgggaccacaggtgtgcaccattacacccagctagtttttaaatttcttgtagacacaggtcttggtatgttgcctaggttggtctcaaactcctgagc
tcaaccagtcctcctgcctaggcctcccaaagtgttgggattaaaggtataagccaccatgcctggccccagagctttcccaaatccaagaaaagatcaa
aa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 484 166 NA intron
877 chr13 38397637 38397638 RIP_Alu_chr13_038_02 0 + HS2.25 CAGCTAAGAGATGGAATCAACC ATCCATTAACCAGCCTCTCC SINE Alu Ya5 agttttctcaaaaactaaaacagcagcaacaacaacaaacttaaaatgaactgccatatgaccctgcaatcccactaccagacatttaactgatagaaag
gaaattagtacatcaaagggccacctgcatccccacgtgtgttgtagcactatttacgacagctaagagatggaatcaacctaaatgttcatcgaaagac
aaatggatcaagaaaatgttgtatatacaaaatgaaacactattcagccataaaatgaaataaaatcctgtcatttgcagcaacatggacaagtctggag
gacattatgttaagggcaggcacagaaaggtaaatactgtgtgttctctctcatatgtgggagcttaaaaaaaaattagctcatGAAAGTAGAGAGTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGAAAGTAGAGAGTTGAattgtaggtattagaggctgggaaaggtagtgggcaggagagga
gaggctggttaatggatacaaaattatagctgaggtaggaggaatgagttttggtgttctgtggcattgcagggtggatatggttaactatgatttattg
catattttcaaaaagctagaagagaggattttgaacattcacaacacaaagaaatgttaagtatttgaagtggtaaatatgctaattagcctgatttgaa
cattacacattgtatatatgtatcaagatattactcactctgtattccataaatatgtgtatatgtatcaattaaaagcaaaagaaaaaatatgtatccc
ataaaacaatagaatatgggccaaccttaatgatttgctt Other - Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL, Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11.PMID: 9360633.
Library screening NA 0 0 0 NA intergenic
881 chr13 38926481 38926791 RIP_Alu_chr13_038_01 0 + Ya5ac2305 TTCTGAGTTGGTGACACTCCA CTTACCCAGGCATCCTTTGA SINE Alu Ya5 gggttttgagtgtatacgtggacttcctaagatacacttcgattgagttcttttattgcatcccctaggcaaatgcaattgatttcagaattattgattg
ttttggatgttccaacccagtttcccttcatacttggggataatcaagagctgatttctgattctcaagaaaaatggagaatttaaggaatattagatct
caaactatcggtataatcttctaatttgtctcattataaagtattctatttctataggacaggttaataatccagaaaaatgaaactaagatgatcaaaa
cctgtagttaatactttaaaatacaatccaacaccatttaatcttctgagttggtgacactccaatttcttctctctaacgtttccttAAGAGTTGTAAT
TGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTACAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAGTTGTAATcaaaggatgcctgggtaagagctgggtttggttttggtacttaggtcttttggtaattccattttagcaccactgaat
tatcattagtgctttaaagagctgccttttgtggatagaatgaattattatacatattcatcatttttgtcttcctactgatacatttaaggagtggaga
tacaatattttcatccaataggtcacaatgcatataattgctgacattttaaatgcatctggaaaaataaatgttactatattattgtagattatagagt
gtccttcacttttttacttttattatttccactttggagattctgtcaataaaagtcaagtgccattccaccctgtgagggtacagggagaagaagctgt
ctttcaatca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 398 76 NA intron
895 chr13 40756210 40756211 RIP_Alu_chr13_040_01 0 - pAlu13-40794835 NA NA SINE Alu Ya5a2 cattctgtcacccaagctagagtgcaatctctgcttactgcagcctctgcttcccaggttcaagtgattctcctgcctgagcctcccgagtagctgggat
tacaggcctggctaatttttgcatttttttttttttttcagtagagatggagttttgccatgttggccaggctggtctcaaactcctgacctcaggtgat
cctcccacctcagcctcccaaagtgctgggattacagtcatgagccaccgtgctaggcctaatcagctaacttttaatttttttgtagagatggtgtctc
cccatgttgcccaggctggtcttgaactcatgggctgtaaagttctaatggaggctacagataggaaagtgttgatagaattaaggtaAAGGTTTATAGA
TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCC
GCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAGGTTTATAGAaaagttagtgtgtttgaacacaatgtaatgtg
gttgcgtcttacctgattgtgttatggggatggacattgtacccaactggggaatgtttcccccacctagtgctgtaaaacaggaggcatgtcaatctgc
cctttaagcaatattatttgaacatgctaaacgggaacaaataagattgtcagaggccgggcgcggtggctcacgcctgtaatcccagcactttgggagg
ccgaggcgggtggatcacgaggtcaggagatcgagaccaaggtgaaaccccgtctctactaaaaatacaaaaagttagccgggcgtagtggcgggcgcct
gtggtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
898 chr13 41053116 41053437 RIP_Alu_chr13_041_01 0 - pAlu13-41091650|13462 NA NA SINE Alu Ye5 aaaaagaaacttaaacgtattgtttctgtgaaggcatataaaccatatcctagggcagtggttttctaacagtgtaacaagaacctttgaaggatgtttg
gcagtggaggggggcagtgagtaggcagcactttgtgccccattgccctccatccccaattcaactacaacaatttcacatgtatagataatgcaggatg
tttcataagctgggcttttgtgcagtatttcatttgaaggaagggttccactgctaacaaatttttaaaggaaaggaagaattagaaagccattgtgtta
gggattatgtaatgtactggattattatttctcacaggctctgagggctttctttctggaaaaggtgccattgaccctctgattTAGATGACTCACTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGGTAACACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGC
GTGAACTCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGACGACAGCGAGACTCCGTCTCAAAAAAAAATAAAATAAA
ATAAAATAAAATAAAATAAAATAGATGACTCACTCTCccttgacagaagaaaacaaggcattaggtgttcctaaaactaagagaagcaggctttctcatt
acaattcttaaacataccattaagtttatatagaatttggggggtaggaatggccttggaaattattttcaccaacctttttgttttacagaagagaaaa
caaagattcaaagaggttcaatgctttgcccaaggtcacaccgttacagtgcaaagccagcacttctgacttccacttcagggctcttagttgatgtttc
atccctgtttcttatagctgttttatctctgttcaatttgatttttttaaactgtaattcaggagcaagtgtatcatttatgtaaggtactctgtcttct
cctacccttggcacctcacca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
904 chr13 41838088 41838089 RIP_Alu_chr13_041_03 0 + pAlu13-41876724 NA NA SINE Alu Yb7 tttctcagtttgaacaatcttggcattcttaaaataaaactcttaattatatgcattatctctttattgtatgaataatacatgaatatttgctttttta
tttttggctactaaaatatttgccaatattaaatttttctcttggataaatattcaggaacaaaactataaggcagttatttctgtttgttgtcatgatc
gagttttgggatcagagctatgtaagtcttaaaaaaatgggaaagtttcagattttttctttgtctaaaacccataaatatcacagagattatctatgtc
ttgaatgtttgttgtaacttttctataaaattaatcaggccttatccactttcagggtgtaaatctttacctgtgttttcaattAAAAAAATAGTTTTTC
GGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATAGTTTTTCtatctcttcttgagcaaattctgttaattttaatttcctacaattattatagtcataagttttttacacag
tattcctttatgaaaaaatctgatctctatgtagggttataaactctctaaaaaattcccaatattatgcagttgtgctttctattctcacaggttagtt
tattttaacatctattcaatggtacatcttattcattctgatgcttttatttttttctaaataatttatttctgattattatttactcctttttaatttt
gtttttttagcttcttaagttgaatgcttttttgatttaattgaaatttttcttatgtgataacaatgttaaaagtaatggattttctattgaaagtgac
attggctatattt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
904 chr13 41844064 41844378 RIP_Alu_chr13_041_02 0 - pAlu13-41882603|Yc1RG283 TCCCCCTGTTCTATCCTCTACTT AACCCAAAAGATAATGGTGTCTG SINE Alu Yc1 ctctatttatgtggttacatctatcaatatttagcggttagaaattaaaactaaaagattctttaatatgtagtaacttattttaaaataagaataagcc
aggggtggtggctcacacctgcaatcccagcactttgggaagccgaggcaagtggatcacttgaggtcaggagttcgagaccagcatggtcaacatggtg
aaacgccatgtgtactaaaaacacacaaaaaattagccgggtatgatctcagctactcaggaggctgaggcaggaggatcacttgaacccaggaggtgga
ggttgcagtgagccaagatggcaccactgcactccaacctgggcaacagagcaagattacatctcaaaaaaataaaacaaaatAAGAATAAACCCATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAATAAACCCATTGCctgttaacataaataacatattcttataaaaaaaagaactatatcttttaaaacaaaaaaaaacagtga
gactgatgtggaagctcaataaattactctcatagaagtagaggatagaacagggggatcgagaggctggggaggaaggagggagaggagatgacagatt
ggttagtggatacaggatcatggctggataggagaaatgagctctagtgttctttagcgctgtaaggtgactagttaacaataatttgttctatgtgttc
aaatagctagaatgtttcagcacaaagaaatgatcaatgtttgaggtgatggatatgctaattactttgatttgatcattacacatggcataaaggtatt
gaaatatcacactg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening|Genome comparison NA 58 963 632 NA intergenic
915 chr13 43278322 43278652 RIP_Alu_chr13_043_01 0 - Ya5ac2278 CCACCTGTGGGCATCTAAGT GGGCACCTCCTCTCTCTTTC SINE Alu Ya5 tggggaaatcccatctctactaaaaatacaaaaaaaaaaaaaaaaaagctgggcatggtggtgcatgctggtagtcccaactacttgggaggctgaggta
ggagaattgcttgaacctggggagcggaggttgcagtgagctgagattgcaccactgcactccagcctggatgacagagtgagactccgtctcaaaaaaa
aataaataaataaataaataaagaagaagcactaagtctgaagacatagttggtttggatgctacattacaatatatgacaaacaacatttcatatttcc
agattttatagaccacctgtgggcatctaagttcattaaaagctaatgttttgggagaggttagctgccatcaaccacccttatcAAAAATGGGATAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGGATAAATgaaaggaatcagagaattggtagtgaaagagagaggaggtgcccacagcaggagg
tggagtatcaagaggaaggggagggtatatgcagaagacagtaggagacagcaaacatgttctgcctgcttcacagtcttctggggactgtctttgcagg
ggtaatcctggagtttccctagagctgcggcttaccaagcctggctgtacattggtgcagcctgaggaggtactcagtgaatcgcaatcactgagatggg
acccaggaagcagaacttttcaaagtgccacaactggcgctgatgtgcagggctacatggctctagaactagtccttgctggaaaggcctgggataaagc
atcgtaagtcttcccactggcagtttgatc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 477 132 NA intergenic
953 chr13 48271232 48271550 RIP_Alu_chr13_048_01 0 - Ya5ac2282 GCTGTTATATGAAGTGTTCACCTTG TGGAAAGCAGAGAAATGCTG SINE Alu Ya5 tgtggctcacgcctgtaatcccaacactttgggaggctgagacaggtggatctcttgaggccaagagttcgaggccagcctagccaacatggcgaaaccc
catctctactaaaaatacaaaaattagccaggcttcgtggcacgtgcctgtaatcccagctactcaggaggttgaggcaggaggattgcttgaacctggg
aggcagatattgcagtgagccgagatcacgccactgaactccagcttgggtgacagagtgagaccccatctcaaaaaaaaaaaagttttatttcatgatt
tgggtgctgttatatgaagtgttcaccttgtacttatgatttgtacacttctgtctatttacataatacatcaatcaaaagtttactTAAAAATAAAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAGC
GTGAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAATAAATA
AATAAAAAAAAATAAAAATAAAAATAAAAAAatcagtatttgcagatgttttaaagagtcaaatagttctacaaggtttaaaacagcatttctctgcttt
ccattccttcaccctcaccccataatatctatctctccagagataatctctttcaacttctaaaaagtcagttcttttgcttttgacccttatatctctg
aataacatgcttattttcatgtcttaatttttcagttttaagaattctttattgacttccaatatggaagctggaaacgtagctctttctcctttgccca
ctcactgtgcacagaaatgtcttccctacctccatatcctccctatgtaaattattcctgattttggttttatttgtgttcaatgtgtataagatatttt
ctatatcagagctattta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 498 167 NA intergenic
992 chr13 53422084 53422391 RIP_Alu_chr13_053_01 0 - Ya5-MLS46 TCAGTAAGCATGAGTCTTCCAGTTC CCCACCACAGATGGCAATACTC SINE Alu Ya5 tagagactgcctacagtccttggcttatggacctgtccatcttgaaaaccaacaatgtctagtggaatctttcttgtatcccattgctctgacactgact
cttctgactccctcactatgtttgggatcactcctgtttacagtggcccatctcaataatccagataaatctccctatttaatgtcacctgattagcaac
cttaacttccctttgctatataacataaaatacccatagtttctggggaccaggatatagaaatctttgggggactattattgcccaccacagatggcaa
tactctccaaatatatttagagatttagtgtaatccctatcaagatctcagttggcttttttcaaatttacaagctgatcttAAAATTCATATGAAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATTCATATGAAAATAaaagggactcatgatttccacaacaatcttgaaaagaaaaaagaactggaagactcatgcttactgatttaaaaa
gttactacaaagctacagtaattatgattacatggtattggcatagggataaacatataggttaaagaaattgaattgaaaatccaaaaagaaattcata
catttatggtcaattgattttcaacaaggatgccaagacaatttaatgggtgaaagaatagtcttttcaacaaatgatgttgacaataggacactgggaa
ataaaaagacatacaacccccaaatttaaatgtgcaaaggattttaacacacatttttccaaaaaaggtatataaatggtcagtcagcacagaaaactgg
gcttaac UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
999 chr13 54336088 54336089 RIP_Alu_chr13_054_01 0 + Ya5-MLS69 GTGAGATATCTAGTTGTGTCCAAGCA AGAGGATACGAAGGAGAGGAACAT SINE Alu Ya5 ggctgcttttccaaatttttgaagtattttgaattctaacatgatactgtcatccaaggtgttacccatttcacccaacttgatgtaatcaacactttgc
aagcgtatgctttttatgaaagcttgttacatcaaagaaggaagtgagaaaactgaaaaaggttcctgaagctcagaaagatctatgattataaagtgta
ctaaaattctgcaacagtgtcttgaagaaatcagtttcttttagaccactgaaacatcaagcacccttgtggcattgtgagatatctagttgtgtccaag
caaaacagcgtatatcatcaagaaaacacctgcactcagctgtaaatattttaacaattggttcaatgtaattttgcaacatttAAAAGTTCACCTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGCGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCTAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGTTCACCTTTTTatacatatgtatacatatactttttatatataaatgtataaatatatatacttaagctttatcctctaagtatccccaaa
gccaaaatgttcctctccttcgtatcctcttcctatctctctggattagtttcactagacagagataagaaaatataattgaagactataccaactttag
aaaaaaaaatacctatcttcagatactggctgtggcacttgttagctgagtgacctttatcaaattacttaacttcttttatctttagttttcttatctg
caatgtagggatagtaatacattctcatggggttagcagaaaaataattagtctattcacagtgccggcatataacaggtagttagtatatagaaactgt
aata Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
1029 chr13 58294896 58294897 RIP_Alu_chr13_058_01 0 - pAlu13-58333517 NA NA SINE Alu Yg6 ccgctctttgcaataaattttactgctgctcattctttgggtccgcactgcctttatgagctataacaccgtgaaggttggcagcctcacttctaaagcc
agcgagaccacaaacccaccaggagagacaaacaactctggacgtgccactttatgaactgtaacagtcagtgcaaaggtctgcagcttcactcctgagg
ccagcgagaccaggaacccaccggaagggacaaacaactccagacgcctcaccttaaaagctgtaacacttacagtgaagctctgcagcttcactcaaac
ccagcgagaccacgaacccaccagaaggaagaaactcggaacacgtccgaacatcacaaggaacaaactccagataccatctttAAGAACTGTAACACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGAACTGTAACACTCactgcaaggtccgcaccaattctggacacaatagtacacttcccaacagtattttaaatttgttttagtattgccaatttga
taggcaaataaatgtcgtaatttaaaatgagaaatggggaaaacagctaacctaaactattacggaaagggaaatagcaagtgctccataaatgagtgag
agaaggagggtgactgaggatcagagatatttagcaattctgggtaaatctcaaaagattcatgaagttttgcactgataagagctggttagccttccat
ttttattccatattggtccagggatagaataaatagaacctcaaaagtccaaatgggaaaaattatatcccaattttattaactttataatagtattacc
aa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1035 chr13 59070500 59070824 RIP_Alu_chr13_059_01 0 + pAlu13-59109036 NA NA SINE Alu Yb7 gacttccatctcatcagaagtctataacaaagtgtgcccctttactgctgggatggtgtgagagaagagcgagtgtgcagccagagcttccaccaacaac
cggtggtaactagagctccctctaccacccatggtgtcagtgaaggccacatggggagcctgacctcccagccctgcccagcagtaatgaggtaccctcc
cccagggtattaacggaacttggacatctgccccaacctgacattaactgagtggcaccaccatcatggtgtcaaaagatatctgctaaaacacaagatt
taaataaaattcagagtcccatgatgcttaaaatgtccaggaaaaatttgaaaatcatacaaagagcttaacttgaatgaattaatgaattAAGATCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAATAAA
AAATAAAAAAAACAAAACAAAAAAAAGATCATCaacactcctcccacataagtggtagagatggtgacagtatctgacaaaaattccaaagtagccatga
gaaaaaatgtttctatgaacatggtttaaacaaagggaaaaaaaagtttcagctaagaaaaagaagatataaaaaaagaacaaaatggaaattttaggac
taaaaatacagtagctgaaataaaaagctcagttggtgggctcaacagcacagtagagatgacagtcagtgaactgtaagagcaatagaaattgcccaat
cagaacaatagatagaaaaaataaactgaaaagataaagagagccttaggggtttatcagactataattaaaaatttaacatttatatattagtccgttt
tcacactactgataaagacacatc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1047 chr13 60685419 60685420 RIP_Alu_chr13_060_01 0 + pAlu13-60724055 NA NA SINE Alu Ya4b atagctgtgtctctgtcatgtgaggaaatcatgggaaggcggctgttggcaatgcagcaagagagccctcaccagaaccgaaccttgtggacaacctgag
cttgaacttccatccttcagaattatgagaaaatcaatttctgttgtttaagccagtctatgatatttttgttatggcaggttaaacttactaatacact
cctaggtttattaacatggatccaagttcactgtaacttaactttaatgctttgaaagcattgaaaataaacttattccttcaaaaactctattaaccac
caaaaacattaatatgcttcaaattcccatgaagtaaatgcattaaacttcaggaaaacatgaggcttattaagttagtgtgtaaAATTTAATTATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCCTCTCAGAAAAAAAAAAAAAAAAA
AAAAAATTTAATTATTTTTattatagagtataaaacatactgtataaattttttttaaaagatgataactttacagtcaaatggtaggttctgagaggag
tttaaatagtactttgtgtacttaggtaaatggtctcctctggaaaaaacgatatcagagttgaaagaaaaaagtacatatactacagaaaaaattctac
agactaaaccataaattattattttaaaaaattactactagaggcattaattttatactccttatattaactcagtctttatgtttgaaatgagtcacaa
tgcagtgatagaatgacttttacctgccattctatgccaattatttggagttgttagatgggataatggatgcttttgtctcttttgctctaataatagt
aatt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1061 chr13 62421817 62422120 RIP_Alu_chr13_062_02 0 - pAlu13-62460348 NA NA SINE Alu Ya5 gagtttgtaggtatactgaacatcattttctgaattcttatgcaagaaagaataagctagagtttttgttctgtctccttaaaagtgggattcccaggaa
ataagcctaattaatgggctttaattatacatcacgtattaaataggagagtggaagaaaatttgattgacaaaacccattgattgtgggaggggtggat
gtttaaaaaaatggaaaaccaatgctgaattgcaaaagttttgttaatgtataattcattttgaaatctcaacttcatttacatttttagtaacactacc
aaaaaattaatcaactcattatcttcatttcattttaagggaaaatggaaaacaactgccatccttatattataatcttcaatttatAAAAATCTTCCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAATCTTCCAAattttcgataaattcttgaaatttcaaatattttccccataacaacctttgtacctgatcaagaacagtgatatattatatatg
gacaataatattattacccatttatttagtatgtagatcaggggtatatttctatgggaaaggaatagacaattaaatattgaattttatgtgtcagaaa
tgctattgtatttaataattaaaaacatgctttgagacacgcattaaaattatcgatttattaataagatagaaacaattcaaagagattagtttcttta
attactcacaataagaaggaagaatatgaatgaaatataaaattatttcctatacactcctctattttattctgttagattatttagaaaatagaaacag
gaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1062 chr13 62554194 62554511 RIP_Alu_chr13_062_01 0 + pAlu13-62592730 NA NA SINE Alu Y aacaaaactgtcagccaagaatcctgtatgtgtcaaaatgaccatttaaaagtacgggagaaactaagtcagtttcagataaatacaagctgagaaagat
cattaccactagctttgccctgcaagaaatgctacaaggaatattgcaggttaaaatggaaggacaatagacaataactcaaatctgtgtgaagaaataa
atattgcagtaaaagtaaatgcatgagcaattataaaagctggtattattgtaacagatttgcaatcatattttgttttctacataatttaagaaactaa
tgatttttaaaaatctttagctaaaaatattaaacaattactaggttatggttttggacatgatgaatgaagatggaattttgtgacatcAAGAACTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAACTAAAatgattggggacagtgctgtaaagttttgcatgtcatcaaagtttgagtattataactgtaggatgctgatta
taatccccatggtcaccaaagaaagagtatagaatttaaaaaaaggaaatgagaaataaaatatttcagtacaaaacaagaactatacacaaaagaagac
agcaatacagaaaattaggaacaaaaaagctacaagtcatatagaaaacaaatagcaaaatgatagaagtatgtccctttgtcaaaattactttagatat
aaaaggtttaaactttccaatcaaaatgcagagattggcagaataggtaagaaacaataatccaactacatgctgtctaccagctactcacttcagatca
aaagtcaaaaataagtt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1067 chr13 63275103 63275400 RIP_Alu_chr13_063_02 0 - pAlu13-63313637 NA NA SINE Alu Sg actgcttttcttctttttctgtaaataaatagctgtaccataccactggagcctagtgtacatgtcttcggttctcagtgaccccaaatcatgcaggtct
cttccctgggtggcattcatctgcttgttaaccttggccgcactcattttatattctgtcctgcagcacagcttgaccgccccgtgaacagtgaaacaca
gctatttctaaaaagtattttggtaaactctcttggaaggaacaaaactagtgtttgttggtcttctatattaccatgtgaaactgagagtgttaaggca
caactactgcaggtagttgctaagtgatgtcagggaaacttgtgcacctcttaaaaatgtgaacaactcaaagttgtgctgtattcaAAGTTTAAAATCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAAGAGTTCGAGACAAGCCTGACCAACATAG
TGAAACCCCGTCTCTACTAAAAGTACAAAAATTATCTGGGCATAGCGGCGCGCGCCTGTAATCCCAGCTACTTGGGAGGCTGGGGCAGGAGAATCGCTTG
AACCCGGGAGGCAGAGATTGCAGTGAGCCGAGATTGCACCACTGCATTCCAGCCTGGGCGAGAGGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
TTTAAAATCAagcatacagcttcaaatattttgacacatgcttttaaacaagagtttgtccaagtaggctatacatcagaaaaatctagaggctcagaac
ataccttgcaaatagaattgtaaaaaatgtagcctaagtaaaagcagataaaatcttctgattgaaaaaattactgcatagcattgggcaattttttttt
ttttgagacagagatctgtactgagaaactattatatacaggaactgaagtcatcatttggggtacactagagtaaatagaaaacaaaaataggaaaaag
ataaaagaaaaaacaaaatatatgaaggtctccatctttgtgtgttttatattctggataggagagatggattataaccaaaaaagtacaatcagtt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1068 chr13 63346599 63346899 RIP_Alu_chr13_063_01 0 - Ya5ac2296 GAGAAGTCTCACCAGGGCAG TCAATGTAACCGTGTTCCCA SINE Alu Ya5 agctaagcctcagagacaaatgtaaatcctatagaaaccaaattactcaaatcagaaaaatacttaattaaaaaggacttttgtccaaaaaggacaaaaa
gtctcttatcatttcaggagggaagtaaagccctttagtaaagatggcctcataactaaacaaattccaaataaaatgaaaaagcgtctaccaaagaaag
gaaggttcagcttgagaagtctcaccagggcagaaaaggcaagccatggaaccagagagttcaaagggctcaagtgagtactcaacaccagtttcaagaa
ttactgattctttccaataatgaactttttttggttccactactggacatcgtttaggtcaactaaataacagagagagtctctctAAAAGAAAATAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCCAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAAATAACAtttatttggaaataaagcattgcaaatagaatatgtctgccatagtaaaccaggtgtgtgttccaggaggtaaaggaagacaaaag
cttttcaggaatgtataagaaagattacataattgttttgagataattattatcttttgctacaagggcgatcccagctcaaggctgggcaggaagttgc
tgggcagatgtccttgtagaagcatttttaaaatttttggatgtagaagtttattttttgcagtctttccttatagtttttgttatcaggcatgtatgca
taagtattctctcttcatagctttccctagctgtatttatcagggtgtggatttttttcagcacgagttactccattttgattctaaaatttttcacagg
UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 955 641 NA intergenic
1094 chr13 66801471 66801472 RIP_Alu_chr13_066_01 0 - pAlu13-66840092 NA NA SINE Alu Ye5 actccacagacatgtctgaaaagaaaaatgggcaggttaaggtgaggcaggtcaaagtgaggtcgcctggagtgaaaaaagtgatacgcaagtgatgatt
gtatccctagacctctcgtcaaatcagccagtcagtgacatgttctgcatttggccatgtactgtggaatatccaaataaatataggacacaggctttct
gctcaaagagcttaaagttcaagtcacatgccaacatatacagcattaaagtatgaacaataataacttaagagaaaaataggatgtaattcaaatggaa
tggaccaacttactgtaaaactcctgaaatgtttgagggctttctgcagaagattgaagttgatctggttcataaaggatgttaAGAATACAGATAGATA
TCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGA
GGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAATACAGATAGATAaagaaaaggtgttagagaataccatggaaaaacaggccagaataagcaaagctgttacg
ttagcaatgagtatgccttgtctttagaagaaaggaggaatacggcctgatgaaatgtcatggaataatttgataaatgtttggctaagaaggagtagat
ggctcatggaaaatattgaaaaagtgcagatgtttggacttgatctgttagataataaggaaatactgaagaaaatacaatttcatgcagagctaataca
tattaatgtaattcccagctactgcctggccattgtgcaggatgttatctcgctaaaataatttcccctgctttatagttctgaaggaagaggaagtctc
ctggagttatattatctaggattac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1110 chr13 68864668 68864962 RIP_Alu_chr13_068_01 0 - Ya5ac2312 GGCTGGATAGATAACAGGCAA GGCTTACCACACAAGCCATT SINE Alu Ya5 aattacagttaaactttcttttgagatggagtctcgctctgtcgcctaggatagagtgcagtggtgcagtctcgcctcactgccagctctgcctcccggg
tccacgccattctcctgcctcagcctcccgagtagctgggaccacaggtgcccgccaccacgcccggctaatttttcgtgtttttagtagagatgggttt
caccatgcaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccaaa
attacagttaaacttctataatggctggatagataacaggcaatttacgttagatggtcagtgaaactctacgaaggaaagtcatatttgaaattAAGTT
CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAA
ATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG
CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTt
caagaatacaaaaaaagagcaattcataagaagattccagagaagaaatttctagcagtcaacagtgcaaaggcactgagtctagaaatggcttgtgtgg
taagccattacaatgggggtactaaagtggagaggggtgttttcaggtgagaacacttaagtaagcagtaactgaaagctgtatatcttctgcaccatta
ttttcagaagtctgtatttggtcaaaaatagttaacattttctgtattgcataaaacctaaccctatattttgatgaatttaaaaaatgtttctgcatat
ttaagactaaattttatttacttcatcaaaaattagtcatttgtatatcatatgcttatggaatgataaccaagtaaatgaatataactgctcc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 484 189 NA intergenic
1114 chr13 69357072 69357373 RIP_Alu_chr13_069_01 0 - Yb8NBC450b TGAAATCTATCTCGTAGGAAGGCTA CCGCTGGTTACCAAAAGATT SINE Alu Yb8 aggagtttgctaacatatgcaagcaatgtaagaaactcaatgggaattgatattttctcttttagcaataacacataatgatgttaaaacaactaatttc
cagaacctacattgtaggtaccataaacaaagtatcattaaaatgaggcttgatggaaaaataaaacagcaaggagaacttgagaaattcaatgaagtgt
aaagaaaaaaaaaaaataacacctacataataatacgtaggtaagtgtgaaagatctgataccagctcctgaggtcccatttccttatagcagtttgtac
aaacaacgccgctggttaccaaaagatttagtgtaacttataaaaatacaaaattattggaatattatttaagttagatgcagagatAAAAAGAAAAGAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGCGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAGAAAAGAAaaagtgctgtagtggtattaaaactattatcagagctgtctgaaaaagaaatcaaactataaaagtctatagccttcctacgagat
agatttcaatttgactctaagttttctggaggccaaataaaaagagaaatctgatcaatttcataatttacaacatccatgataaaagcaaaccaattta
ttcaggagaagtgcaattattcttgctactaaaacctgaaagaaacttctcccaagggtcaccataaagaggacactataaaatataatgaaatatgcct
tgaacagtatctttatgacagataccactaggagtttcatagagctgttttttatgacatccctcactatattttgatggcctagctatagagttctgtg
t UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 61 500 186 NA intron
1133 chr13 71854725 71855025 RIP_Alu_chr13_071_01 0 + Ya5_552 TCAAAGTTCATTGGAACCAAAA GCAGGCAACTTCAACAGCTT SINE Alu Ya5 tgctgtgatttcaatctttgagaaaaactaaggctttcatgagctaatcatcttctgtatctttatattctggctaattagtaattataaattgcctatt
ttaaaacaggatctaggacacaatgaaaatttttaaaaagttaaatcaatctgggctgaatgcccagaaaaattaaaaatttagtttaacactcctggga
tctctatgtgtatgtgtatacgtctatgattgggtttattagacaaaactaattgaaaagaagatatctggaaattaaacctcaaataatattagtcaga
gataaggaagcatatttttaatcaaagttcattggaccaaaaaaagtctataaagtaacttaatccaaggttttttttttttttttaaaaAAAAGGGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGGGTTTaaaaaaaaaaacttaagctgttgaagttgcctgcatttaaaattaatacctaggggtagaaaacctactccttaaacctgatactaagaa
atatgcttattaatggagtcaggggtagaaaaaggtttaaggaggagaaaataaaagtgaaaataaagagacaagcaaggggtatagcagatggagatag
acattcaaagctggagagagaaagagtaggaaagattaaagcatttagaacatattccaaggaatattcttaggctatgggcatcacagtgggctgtctc
cctgccctttgggtaattgactagccactattctcagctgcttaagtgtataagcttcttaagaggccatttttgttttattcatagtgcctactatagt
UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 423 131 NA intergenic
1141 chr13 72972922 72973240 RIP_Alu_chr13_072_01 0 - 237949 NA NA SINE Alu Ya5 tctggagagccaccgtttcccagttcatagatggtgccctctcactgtgtcctcacaaggtggaaaagggagaactccagtgctttcagccccttagcag
ggtactcatcccattcatgaggctctacccacctcctaatgccatcacattggtgaataggtttcaacatatgaattttggggggtacacaagcattcag
accatagcactttccaaggatcgctttgcagtttcctattctcagatgaacacattcctaaatgtaacagatctgaaagtgctggataatttgaatgaat
gctggttacgcaaagaaggcatatatctttgtttgataaaaatttgttacaattctctgtgaatggagaaaagatttatcagatacctttAACAAGATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
AGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTACGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACAAGATAGaaaaaagccaaatgcttctctcttagataaatagaaatgaaggtctgtcttacctattagaccttgattgta
agtcattatctcacaggggtctgttttacttaactaggcccaacatccaggtcaggaagagcttttcctctagccgattcatatgtgtattcacctaaca
gatgctttaaacacatattctctgcaaagctgtatggcttcgctaggagtagagaacacagagatgaacacgatagggtctttgtccctgataataactt
aaagatccatcaaagttgtacagtaagtaacaataagatttctgttacagcacagtgccaagtctgagctcctgcctcaactttcacagattaatccttc
atagaaatacattaatca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1158 chr13 75209608 75209925 RIP_Alu_chr13_075_01 0 + Yc1RG345 GGCAAATCATAGATTTCATAGGG TTGGGAACCTCAACTAAGAGACA SINE Alu Yc1 gaatagagttgttggagatgatataactagttataatgagctcatactggggtaaggagggcccctaatcttaatatgactggtgtccttctaaaaagat
ggcctgtgaaaacacagacacacaggaagaatgccatataaagataggattggagtgatgcatctacaagccagagaacacctgcgattgctggcaaatc
atagatttcatagggagtgtggctttgctaacaccttgattttggacttgtagcatccagaattgtaagacaaaaaatctttgttgccttaagccacctg
gtttgttccaaaaggaacaaagtaccaaatatagctctaggaaattaatacagataggtacatgttttagttaataccttttttAAAAAAAAAAAAACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA
TAAAATAAAATAAAAAAAAAAAAAAAAAAACTTtttactttgaaataaatatagattcacaggaagctgccaaaaaaaaaaaaaaaaaaaaaacacagta
caaaaatgtcctctgtactcttcacccagttttccccatttccagcagaatttttttggtgtctcttagttgaggttcccaaagaggaatctgaatggat
tccttttctttgaaggctacagatatcccaggtcactggccagcctgtggatgagttccataagaagacagtcgtcttggccaaatgagctgtggtcagg
agtgttgttttttttttggctcattcagttcaggttgacgtgggtactgtgaaggaggtttgtgtaaggtagattcaccaaggcgattcaaatatagtaa
aaatttctgtgtaaggg UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 0 0 0 NA intron
1176 chr13 77492165 77492475 RIP_Alu_chr13_077_01 0 + Yb8AC1675 TTTCAAGATGTCATGGGCTG TGACATTTGCTTTTCCAGCA SINE Alu Yb8 taatgatgcaaacagtgccagactctttgcattgatcagatcacctctggaatattgttttaagttctaggtgccttaaagcatatggatatatattcat
attagattgctaagagttgaagtcatgtcatagagaaaacaaacaaagaatgtttgctggggtgagggtggggtagcattatagctatctttaaatatta
aatgattttccaagtggaatgtgaccaaggactggtatacaagatataaggttagggtgaatgaatgataactaagccagagcatattttttttaacatg
aggaagatatttttaacagacagcgctctttcaagatgtcatgggctgcctcattaggaggcaagtgtttagctctaaaggcattcAAGAAGATGCTGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAAGATGCTGGAaaagcaaatgtcagaaaagaaatgtcagaaacaaatacaagttatctcattcctgagaaaactataactttcctgg
tagatccacaactttggatagggatggtgaaaggtgccaataattttgcagatggtctcaaaggcagcaaaggcagatctgcttttatgggtgtttttaa
gctgttcagtctacttaatttgctactgtaaatgttttgcatatttaaaaattgggcttaaatttttttaaaaataactttggctcaccctaatgaataa
ctcccagaattaaaaaattgaatagcaaaaacaaagtagttgttgcagagaaccatagtcgtgggaaccatagttgtccttgcttttatttattagtcac
ataacctttg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 409 85 NA intergenic
1176 chr13 77549688 77549689 RIP_Alu_chr13_077_02 0 + pAlu13-77588325 NA NA SINE Alu Ya5 tcaagttttctaggaatagtgaaactagttaaaccaaatatgagagcccttttcaccaatgaggaatgagttcttttcatctactagtagtacttttcat
catttttcacctgctagaatggcaaaacaacaataataataatcatggcttggccattgtatagctaagtactctgttgataagaccataaattaattct
actttgtgataaatttgatagtatctagttaaatttaaaatgcaaaaagcatatgacctagtagttatatttcggctatctattctagagcaatacatgt
gatgttttcaagtaaaaggaagtatataaaagatgtttattgcagtcttggctttaaaaaaaatagagaaactttaattgccatAAAAATGGGAATTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATGGGAATTGTTaaacaagttttgacatattaatgctgcagaatgcactgcagcacttaaaaagagtaagataatagacagccaaaataaaattgct
agatcctatgttatttgtattttaaatttaatcagacattgtcacagacagtgtcaaattcatcacaaagtagaaccaagttataatcttaccagtagag
tatttacttatgtcatttatttctagaaagttctactagatgaattgttagaactacattccaattagcaccatgacatagagtaatacttttctataaa
tatgcaaaagaaaatattcacaaatataaaataagtgtaaatgtgtaaaaagaaaaataaacactaaattacaccatatggcctgatatgcatgaatag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1184 chr13 78559082 78559403 RIP_Alu_chr13_078_02 0 - 6509|pAlu13-78597629 NA NA SINE Alu Ya5 aagctgttcatgcctaacttacctttctcaatctatttcacctgcttccattttttttttttgtttagtaaacatctgctttctattagattgttttatc
cccttaaccttcataaatgacaattaagtccatctagtctgtcaatagcatgtcatttatttgttgctacagctgagcctgaccttcattgattttattg
gagtaatttgctggaaatgattttttaatgttggatttattgcccaggcacttcattgtcagataattgaagtaaattgtatttttttttcaaaccaaaa
gcaagaagtgcaggaaagagatatatatattattttgaataattatttcctattgggaaatattactattgaggtagagagacattAAATGTGATGTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAATGTGATGTCATatacttttcaagtttgcaaacatagattgttcttgagtcgtgcacacttttctccctttttggct
tttccttaaggatagctgaggtagaaataggagttggtaatgaattacattcaaaaatgatgttgcaaattagattagctatatacctaaatctatcaag
tagctacaccaccacctcttacataatgggccttgctattgtgatttaactgcaggttaaattataaatatgctgatgttacatagttaatcttagcttt
tacaaggtattatcttattccctcagtatcagtgttaacaaggcttttttatgttgtgcgtttggttctccaaaaattttgattgtctgcccagatgata
attagtatttcagtccctaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1187 chr13 78979408 78979709 RIP_Alu_chr13_078_01 0 - Ya5ac2323 CACCCATGTGTCCTTGAAAA CCATGGATTTTCTGTTTCTGTG SINE Alu Ya5 ggcatacatgtaagtattcaaagaaaagcagaaaaacattcacaaaaatgataaatatcaacttcaggataatgttaaagggattaagagatgaggaaaa
gcatagaatgtaaaactttatttcatttcttaaaaaaaaaaaagttcaagatctcaaacaaatacagcaagatgttaacatctattatgtccacggtgga
tatagaactatcttttactttatgtttgaagtgtttcatagttttaatatttaaattttaaaaaaagttgatcctgacaagttgtattccacgaatagac
atttttaaacatgaaagaagacagaatacacagcacccatgtgtccttgaaaaagcaactaccccatgatgaaaacaagacaactAAAAACTCAATCAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAACTCAATCAGAacaaaaaacacagaaacagaaaatccatggaaaagatataatggtaagcactgaatccatttaaatatagaactaaggttaaac
atagagctaaagactaacttctggtaaacagaaagcaaatattatatgccctaaaaaagcaaaaatacaacataaaattcagaactgaagaaagagatga
caaaacgtatgaacagcactcaacttcatctttcatggcagggatttcatatctcatctaaattttaaacatgcagttttaaaaaatactccgatttctt
actgttttttataaactattttcccaattttagtgaactcttacagaacctaagatttttgtggcaaagaaacctttacctagagttcaacatttaccta
g UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 413 97 NA intron
1188 chr13 79097094 79097095 RIP_Alu_chr13_079_01 0 + 22268 NA NA SINE Alu Yb8 gaatttttttcatattttactggccagggacccactgatgtaggtctcaagaagttatatgtatcagaataactttggagcttcgtcaagttattcacat
tgaccccttgccccagatttgacatatcccccttttcccaggctgggatctactttttctaagttaatacattgtgtgtcttccccaggattttggcagg
tatcccatagtacatatcaaaacatgaaaggggtaaaagaatgggggcagggcaaagttgtatagctttgaaatttctcacgggacattctgatacccca
gccttcaaccctcatttgaagacagttcttctctacatagtgttaggagggcttacaagtaattttcagggactcacgttaacttaAAGAAGTACAGGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAAGTACAGGTGcctacagattgattggggaaataagctggggacaactaagtaatatggaggccatctatgtagcctgaactatcattg
cgtgttaaagtaacagattcaccatcattaagatttaggcaagaggaagacatgcttagctttcaatgggcaggaacctgctaagttactgaactttcaa
taaaggatatagcgggtctgattttgcttggccgtttttcagattttctgtgctttaaaaagattttgtgaatcacagaatgtcttctgtttcgtggagg
agttgctgtgaaccttccatagaagatggtatgccattttaccactttgtttataaaatttattcatattggtatattcattcaattactcatttaataa
attcttag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1192 chr13 79670343 79670344 RIP_Alu_chr13_079_02 0 + pAlu13-79708980 NA NA SINE Alu Ya5 cttgaacccaggagatggaggttgcagtgagtcgagattgcaccactgcactccagcctgggtgacacagcgacactctgtcaaaaacaaaaacaaaaac
aaaaaatttataaagatgacatcttgccatcttgcccaggctggtctcaaagtcctgggctcaagcactcctcctgccttggcttcccaaagtgttggaa
ttacaggcatgagccacggtgccccactagcctgactttaatattttcatgaggcaatgcttcaatgctaacctccaatataatttcatgcatattttca
ggaaatacatgatgttttgctataaataagtcattggtgttatctgtttctactttgcatatagggatgaagagccagccattgttAGAAAGGCAATGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAAGGCAATGTGactcagaggcaagacaaagataagatccttcgtctctggtattcagagcaggtcctcaatttatggaaatagtgacattgttccattt
tccccgcatcccagtgaaagtattcaagtgactgtttacacacaactggtgatgttcacagttgtagcacttttgccctcaatgtgttatatctatagga
attcataagttgaaagttagtaagtggagatgcttttgtattgaaatccgatttctattaaccaagcgaagaggaaactgaaggtctatttattctagtt
ttagacacacttctaaaaagtttggctatctattgtgctcacaacactaaaaattaacaaataagtagaaatagtgccttagagggaaatagtgcctt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1199 chr13 80539708 80539709 RIP_Alu_chr13_080_02 0 + pAlu13-69295551 NA NA SINE Alu Ya5 attgtgatcttagggtgtcaattttggatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacccacacactgctttgaatgtgt
cccagagattctggtgtgttgtgtctttgttctcataggtttcaaagaacatctttatttctgccttcatttcgttatgtacccagtagtcattgaggag
caggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttctagtttgattgcactgtggtgtgagagacagttcgttata
atttctattcttttacatttgatgaggagtgctttacttccaactatgtggtctattttggaataggtgtggtgtggtgctgaaaaaAATGTATATTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAATGTATATTCTGttgatttggggtggagagttctgtagatgtctattaggtccgcttggtgcagagctgagttcaattcctgggtatccttg
ttaactttctgtctcgttgatctgtctaatattgacagtggggtgttaaagtctcccattattattgtgtgggagtctaagtctctttgtaggtcactaa
ggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttatcattatgtaatg
gccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttgttttccatttgcttggtag
atctttc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1200 chr13 80645255 80645565 RIP_Alu_chr13_080_01 0 - pAlu13-80683790 NA NA SINE Alu Ya5 aaaaatgatggaagagtgtgattaatgataaatgaacttctattatctgccagttactttatatatgcaccagagtcaatgcttaacacaactgctggaa
gtaagaactgctaaatttgttttcctgtgatgaaatggaaattcataaggattataatatttcattgaattgaaaaccaatcctattcattgaaagacac
gtatcaccttactgccaggagaaacagaaaatgctgccaaacatgactgtaagacttatctgtagactggtactgactcaaaaatgttattctggtagga
tttaggtgggtaaatgataccggtaggatgggttgggtggcccatggagtaatgccaggtagtaaagcacctgtttaaggcaAAGAAGTTGGTGAGCTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAGTTGGTGAGCTGAatctattcccaggcctctctgactccaaagccctgattcttacattgaacctcacggcctcagctatcttca
caaaacaggatgcatttgacattttcctatatgagaactcatcttttccttgatggcaccagcagtctttgtaaccttcatgtggaggaaatcaaagtgc
atggcagtgtattaatcagaaaaatggattgtgcttgcctcctcctgccaatcacttgacaaggaaaaacagatagcaaagattaaatcacagcttgctc
aaatgctccacacttgaaataaatacatttcagctttcacgaaagtccattatgcactgtttggctttgattagcagggggcatttcataaaacatgaaa
gaaaggtaca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1208 chr13 81787212 81787538 RIP_Alu_chr13_081_01 0 + Yb8NBC480|239124|pAlu13-81825749 CCTCTCTCACAAACAGTGCAG TCGCAAGACACAGGCTATCA SINE Alu Yb8 ctcattattttgaacactgcacactagaaaaatgcttttttctctctctcttttttggtagattgtgtatgaataatgggataaaaattggaataaagag
aaagtatatgatactcaccttcatctgtcttcagagttttagatgatctccagtctgtttttctaaggttagaagacaagacaagtatgaataccttaca
taacacctactgtagttaattttaaaggtcactcttttttttttcaaaaataaaaatgacaaaaagttactggctcatctcgtcttttctgcttttcctc
aagggccaggtctctgagttcctctctcacaaacagtgcagtgatattatgtattactcttaccaatttgtgcatgtgattttAAAGATGGTATCATTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGGTATCATTGGgatactttgaataatgatagcctgtgtcttgcgaatttagctaagaatctttcctct
ggaatcatttcagatgaacagtaaggtaaaatacagtgaagacaggaaaactaccgattctttgaaggcagtgtggcagcctctatgtcctagttttgtt
ttctgttaatgtttattcaaaatttaaaaactcaaataaaaaatggtattccaaattttatgcctattacaaattaactacaatagaaaaaatagagtat
tatattctcttctaaacttagttagggtaacataatttaaagtgtattaatttgtcatgaattattcaatcttgtttctactattgtggtgttctcacat
gctgaatattaacttgtagacatcaa UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening|Genome comparison|Trace comparison NA 65 457 114 NA intergenic
1221 chr13 83377042 83377343 RIP_Alu_chr13_083_01 0 - Ya5ac2330 TTCACAATGCAAGATAAGAAAAAGA TGACTGGTAAGTATGGCAAGGTT SINE Alu Ya5 atttgcagttaatgttttaattttctgtaacttttcaaatttctgacttaaagctgttcataatgccttttcaatcttgatcttaaatttcttttattac
tgcccaacagaacatttttgagcagatagtaatttctattgatttctaaaataaactacaatttgattacagttacaagtagagtttagtggtttcaact
gctaagaaacataagctaacttttatatatctatgttaccatataaactacatactatatgacagtatgacactatggtcatatacctttatacttatat
ataaatatatacctatagaatatacattgtatacaatacacatatacattgtgtatgtgtatgtgtattcacaatgcaagatAAGAAAAAGATTAGTGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAAAGATTAGTGACattaaaatgacatttcaaatgctacaataatgatggagttgaaacatataaattaaaccttgccatacttaccagtcacag
tgttacattttatgtaccccataaacagattcttttgaaaattcagtattaattttaattaaactttcagtgtttgtcgaattccattttgttcctattt
ttcttttatagatgacctaatttcagaagctgcatttgtgctaattagtttcattaattcactattcacttacaacatgtggctataatgtatatgtgtg
tatgtatgtatatctttatatatgtgaatatatattcatttataacaaactttttagtaagggactaatgattttattattcaccttttaatatctgagc
a UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 430 112 NA intergenic
1240 chr13 85953193 85953490 RIP_Alu_chr13_085_01 0 + 1763|Ya5ac2333 TTAATGGAGCATCGGAGACC ATTCTGCTTTGGCACTTTGC SINE Alu Ya5 gcctcagagtctgttttccaggaagtcagtgaagtacaaaagtacactgaggaaagaaaagtacctagactttttgaggacaattaagataaagactctg
tgctaactgataactgttgatccaaatgctgaataattttaattcttacttaagcactaaaagggaatacaacacattctatacattccactggctctct
catttctggatctcacaggtagagaagtgagacagatatgtcttttttttttttaatggagcatcggagacctatataataaacttctattgtgatagac
ttagtgactttggcaagtcttataactgactcatatgagcttactgtattcactagactgtatcatatttttcttattaaccagtattaatcAAAAAAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGCaaagtgccaaagcagaataaaaactatatgtattgacattcatacgaaatgtatttatgtatgtcataatataaatccatgcaaaatgacatttt
caccataaaggtcacagtaaaaagaaaaataaaatgttgggccaagcacagtgactcatgcctgtaatgtaagccctttgggaggctgaggttggtggat
tgcttgagcccaggagtttgagaccagcctgtgcagcatagtgaaaccccatctctacaaaactacaaaaaattagcctggcatggtggcatgcacctgt
agtccagcaacccaagagtctgagctccagaggtcaaagctgcagtgagctgtgactgcaccattgcactccagcctgtgtgacaaatgagatcttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 471 166 NA intergenic
1242 chr13 86190964 86190965 RIP_Alu_chr13_086_01 0 - pAlu13-86229585 NA NA SINE Alu Ya5a2 tatctgcaaatagttgtgccctgagcattacacataaaactaatccaaatctaaactcattataatccttgaaaaatatattctactgtatacattccat
attttaccataaacatttcctattgccagtcaccataaaaaggaaccccaaagaaatgtaaaggtgcatcttctatgcactattcacattaaaacagtca
agaaatatttttgattctacctcctaaatattttataaatacattaaatttcttccatacttagtatatttctttagttatggttttcattatttcatat
cagaaaaataaaaattttcattgcttctttttattcagcttccaaactaatacagacacaaatatacatttatacactaaaattAGAAATGTTCAGTTAA
CAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG
AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGTTCAGTTAAaagtaa
cctttatttaaaattctgatagcaattgcttaatggctctgcataacctttgtaccaatctatacttctagtatttcttccaaagtgttatattttttat
tttttgtgctgttgttagctaataatagtaatacatagaaaaagtgttcatataccctccttttaatatttttttattgtcataagtaaatttcccagac
aatgttcaagtcatgatataaaagcaggtatatttgtcttgtttctgaatagagggttatctcttgaattcagtagataggagaaaatttgagatagaat
tttgggtatgtttacacaagcaaattagaggagattcaaaaaagtatttaatcagattaattcattaaaattattaaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1254 chr13 87801284 87801607 RIP_Alu_chr13_087_01 0 - Ya5ac2336|pAlu13-87839827|238759 GTATCACATGAGGTGCCTTGATT GTCCTTTCCCTAATTCTAATGTCTG SINE Alu Ya5 gttattgctttcctgaagcttttccaaaatccatcatttccagacaaaactagttattagcaaaacctgaggtgttaaacatgatattcacaactttaaa
ttaatatagaataaaatactatggatatagttcataagctaagaaattattatatgaaaatatttctgtatgtgtaaagttgaagtgtgtatcacatgag
gtgccttgattaatatgttggtaagatttttaagaaatttgtattgctttttatttaaaataaaattattactgtatttaaaataaaataaaatttcttc
agcattagtagccattagacatcttttagctcaagagtcagactctcattcattcagtacagagtagaattggtaaatgatactctcAGAAAAATACTAG
ATTTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA
AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAAAATACTAGatttagatatcagacattagaattagggaaaggactgttacagtactatggtgaaaaaatgtaa
cagaggagaaaaaatgaaaatcatttctccctttagaatataaaattttaggatgtaatcccttttttagataagaaaaacacaacttagtcatatgttt
tcctatgggaagagacaagctctcacaaagacatagaaaattttctccgccgaaatgaaaaaaaaaggaatatcttgccaattttttctttttctttttt
cttcttgattaagcctttttatatcacaggggagagaaaattgattagaagtatttaaatgtttcatttggatgacattattttttagtttcctacttga
tacaagatttattcaaagattga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 0 585 250 NA intergenic
1265 chr13 89219384 89219521 RIP_Alu_chr13_089_01 0 + 16768 NA NA SINE Alu Y? ctattagttgtaccttaaagtttctgagcctgccttattaaattttcttttacatttcatatgcttttgccaatttgcagctctttctaagagaattcca
caattccatattccacatgactaataagttgtatccattttgttctttgacaaactaactagtttatttatgtgtgagattaaaactacatgaagtttct
ggaattataacggttcccagaattacacattttgtgataaaattagtggttctaaagctatatggatagttaagtaagaattcccttcattttcttgaaa
ataataatagagcccatgattttcccagccaactggccctcgggattttcttttggaaatggacctgtttactgaaaattaattAGAAATGACCCACCTG
CGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC
TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGACCCACCTGactttgactaagaaatttgctgaatttggcatctagaatagtatttt
gtttgtcttaaataatattttacacaaggcgagattagaaatcatacacacacacacacacacacgcacacacacaaaaagaattgatactctttgataa
ctttttgtcatctgctaacaaatgcttgtatccatgacagaatcctgcctgagaattttgttctttgtaatatactacctggagggaacactgtagtgaa
tgcagcctcacatccttcacctacctttattagaaggttacaccacacagcaagaagaatctaatgattttgaattaccgaaattgtctttgctgtttca
taacagcgtataaaattaattgtccaaaaccccactt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1266 chr13 89348562 89348563 RIP_Alu_chr13_089_02 0 + 5444 NA NA SINE Alu Ye5 ttctcatctattgtgttctacctttctttgaaagcctactacttagaacaggctaaaggtggtgcagttctaatgagctagaatttgttaattaagtggg
gagtttttcaacaccaactctccaatatggccattgaaaggatggaagcatctgagctatggagaaaagtcactgcaacatacagactttgcagagcagc
aaaatcaaaagtaatccaagcagcttattcagaatcagaaaagacaggagaattaggcacctcaatgagctgactcagaaacaggcacaaatcataactc
tttttctctaaatattctaggaaaagaagaatccttgaaagtctatgatttcttatacctaagggaatgtgtatcaggagagaggtAACAGGAGACAGAT
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGTCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATA
AATAAATAAACAGGAGACAGATctgagattaaagcagttttccttgaaatccattatcagcagatacgaaaataccaattttaagattgcctgtttcatt
ttggggccagtcctcctctttagtcaaactttgtacccctgggctgtatgttatgacagttgtcacacccaccactgatccaaacaaagaatgtctggaa
gagttcaatttaattctgtaattgcaacagaaagaaacagatgaaaaacatagaaaatgcttggttgccatttgccaatttaggcaactgctctgatata
atatctactgttcaagcaaatactaatcacctacatatctgagtactaacttaaatgtacttttaagtttctgataaaactcttatgagcacatgtcaca
ttcttctg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1269 chr13 89745656 89745657 RIP_Alu_chr13_089_04 0 - pAlu13-89784280 NA NA SINE Alu Yb7 tatacaccaagttttcttgagataagaataaattgaatagaaccatgataacctatcatttatattcctctatttacaacctaaatattctatgctacat
ttggtagttacacattattcccttaccaatactcttcactccactacattttagtagttctccaaaacaaactcaagtgtaataataagtttgttatttg
tactttacagttcaatagctgcagaatcaaataggaatgatttcttgttttcttaatgtagattttaagaatatacataaatatttttgttaaatttaag
aggatcatttatttgaattgcataaagaaaaatacaatttaaaagtaaattttcttgaactaaatgatcagtgttttttcaagcatgTAATGAAACTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGTCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCATAAAAAAAA
AAAAAAAAATAATGAAACTGCAcctctgtccttattttatgattaatacataagttagttttaaatatttaaacaaaatatacacttgcttgtttacgga
ctaaacattcagtagctttttcttaagccgaggatgttttgcaagtaacacagtaaaatgtattaaagaattcaaatttcagattgtggaagaagcttca
tttgaattcaatgaaaaaatttttgaatctgtaaagcagatcattctcttaaattttctttctgacaaaatagaagaaaatcgcttatgttaaagcaaaa
ttgatgctttaaacctagaagttttaaatataaaatagtttcataatttaacatttgtaaatacttaggggtatgctgaaagtaatttagcatgaaaaca
tcaacagaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1271 chr13 89958053 89958290 RIP_Alu_chr13_089_03 0 + pAlu13-89996590 NA NA SINE Alu Yb7 attaaacctaatgcaaccactgaaatcatgtcatagcattataaatcataagcaacttaagagaaaatgaaatcataaaactatgtaagtactctaaaat
aaaaaagaaaggaaaaagagataaataggatatataaaaaagcaaacaggaatataatagagctaaactttattatagcaattatcacataaaatgtaaa
tagtttacacactcaaaagagattttgaaaagatccgactatatgctgtcttttgaataaagaaacaaatcagttaaaagtgaataaatgaaaaatatat
catgctaaccaaaaaaagctgatgagtacattacagtaagacaaagtagattttaaaacaaaaaactccaatattatcaaaatgataaAAGGGTTACTTT
AAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGC
TACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGA
CAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGGGTTACTTTatcataagagcaacacatggttacaatcatgcttacatgtaaacaaatata
tttgcacatttaaaataaatgaaccagccactaataaaactgcaatgagatatagataatgccataatttcagtttgagatttcaaaggagctcacaata
attgattgaacaagtatataaagaccagtaagaatacaccgaccaacttgacgacagtagtatctatagaagcctgcatccaacaaaaatagaaaacaca
tactatttaggtatacatggagtacttttgggcatagaagttaatctgagccataaaacaaatatcaatgaatttaaaaatatcttttctactaataatg
gcatcaataacaacctaccaaatcacaaaatatctag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1279 chr13 91059287 91059288 RIP_Alu_chr13_091_02 0 + pAlu13-91097923 NA NA SINE Alu Yg6 aaaagcagattgtatcatcttaaatacctacagctatctagggctgttcaggggactttgtggggtgagccaagagaaaatgttataattaaatagatat
gaggtaaaagagaaccaatatttgctcatttaaattatatttagttttgtgtaataagatttagaaagttccaaactgggatgatctgagctggtttcaa
tggtatttgctgttaatgattggacatcagttctgtgtatttgctttcccctttgatcatagggaaggtaaatttgtttatttagaatttgtttatttag
aattttgttagactaattgaatcagactattaataaaaagtcaaattcagtgtgacaacattgtaggtgtgtgccatcaaggcataaAATTTAGATTTGA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAATTTAGATTTGAccagcaatctctaatgacacaggagttggtgatagtgtccttgtcagggaaggaaaatcaatctttcaggcatatt
aagtgaggtaaatattttgttgaagaggttctatcactgcaaattccagttaacagcaccagctctctgaaattaacaggccatgtaattctgaatctaa
taagattcgaatgctgtatcatattaggtgccagtagctaaagctctgagagccgggagtggtgggaagatgtaaacatgatcagttagcttctttttga
cagcaccttggaatgaactgacacaggcaacaaatgggatagaactgtgaaatagccaaaaacaatacaagaggctgagataaaaacagttcatttggca
acgtactgatt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1279 chr13 91077265 91077584 RIP_Alu_chr13_091_01 0 - 22344 NA NA SINE Alu Yb8 aaacttcaatgagtccaagtagacaaactttattttatatttcaagtacctgtttcaagattcaacccaattagagatctccccagtgtgtcattttttc
aggccaaggacaagaatcaaataatcctttttattattattcaaacaccatctatagagatttagagtctgtactactgagaaatcttttcctattccta
atagatatgtctggagagtgacaattacaatctaaggtgtaaaagaaaaatttaagcaaattcttcctcaaagaaaaaagctcctcacactgtcttccac
aatggttgaactagtttacagtcccaccaacagtgtaaaagtgataccatttctcacatacatcatggaatactatgcagccatAAAAAATGATGAGTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGCAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATGATGAGTTCatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcagactatcgcaaggaca
aaaaaccaaacaccgcatgttctcactcataggtaggaatttaacaatgagaacacctggacacaggaaggggaacatcacacatgagggcctgttgtgg
ggttgggggaatggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacgtgtcacatgtttacatatgta
acaaacctgcacgtagtgcacatgtaccctagaacttaaagtataataaatatatatataaacaaataaaaaaataaaataaaataagctcctcaatcac
tatgtctaaaaacattatt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1291 chr13 92626419 92626420 RIP_Alu_chr13_092_01 0 - pAlu13-92665044 NA NA SINE Alu Ya5 ttttgcatcctgaaactttactaaatttgtttatcaaatctaggagcatttgggcagagattatggggttttctaggtataaaatcatactatctgcaaa
catatagtttaactttctatcttactattatgatgtcttttatttctttctcttgccttttcctctagctaggacttacagtactatgttgaataggaat
ggtgagagtgggctttcttgtcttgttctggctctcaagggaaatgcttccagctttttcccattctgtatgatgttggctgtgggcttgtcatagatgg
ctcttactattttgagaaatgtttcttcaagacctactttgtagagcctctagctttttaacatgaagctgtgctgaattttatcaaaAACCTTTTCTGC
GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAATGGTGAAACCCC
GTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG
GAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAACCTTTTCT
GCatgtattgagatgatcatggggtttttgtttttagttctgcttatatgatgaatcacatttattgatctgtgtgtgttgaaccaactttgcatccaag
gaataaagcccacttgattatggtgaattaagttttttacatgtggttggatttgggttgctagtattttgttgaggatttttgcatctgtgttcatcaa
ggatattggcctgaagttttattttgtgtgtttgtgtgtctcttccagattttgctatcaggatgatgctgccctcataaaatgagttaaagaggagctc
ttcctcatctatttcttggaatagtttcagtaggaatgatatcagcttttctttatttacctgtagaaattggctgtgaatccatttggt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1302 chr13 94049134 94049442 RIP_Alu_chr13_094_01 0 - Yb8NBC564 TCTGAGACACATGGATTACTTGC TGAGGAACCACCTCCTACCA SINE Alu Yb8 tcacgcccggccatgtactttcattttcaataaatccctgctttcgttctttcgttgcttcattcttttgttgcttcattcttgccttgctttgctgtgc
attttgtccaattctttgttcaaaatgccaagaaactggacaacttgcagtcaagaccctccactggtaacaaaagtaggagctcaaaattatttcatga
ataaatgtatataaattattttcatttaacaacaagcttctataacatataaggaagttctcataacagacctcatcatttagaaaaaaaaaatattgag
gaaccacctcctaccatatacacagcattttcagtatttctggctgaccaggaatatgctggaagtattaatattttcggattttttAAAAAAAAACTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAACTGCaaggattctttattatgcaagtaatccatgtgtctcagaaaaaaattcacagtcaaaagtatataaagtgggctgggcg
cagtggctcacgtctgtaatcccagcactttgggaagtgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaact
catctctactaaaaatacaaaaactagccaggtgtggtagcatgcgcctgtaatcccagctacttggaggctgagatgggagaatcgcttgaacctggga
agcagaggttgcagtgagtcaagattgtggcactgcactccaggctgggcaacagagcgagactgtctcaaaaaaacaaaagtatataaagtaaaaatta
aactcccc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 58 464 143 NA promoter
1313 chr13 95431437 95431741 RIP_Alu_chr13_095_01 0 + pAlu13-95469973 NA NA SINE Alu Yh9 ggtcaggagttcgtgaccagcctggccaacatggcgaaaccctgtctctactaaaaatacaaaaattagccgggtgtggtggcgtgtacctgtaatccca
gctacccaaggaggctgaggcaggagaattgctggaacccgggaggcagaggctgcagtgagccaagatcatgccactgcactccagcctgggtgacaga
gcaagactccatctcaaagattcttcctgtttccttttatatttgtgggcaggatgtttcttttatttatgtatttattttaaactaaatgtttcttatc
tcctctactcgaaggtcatatcctctttatctccttaagtaaagccaggagctctgcagtacccccaagtgagaaaaattatgcttAAGACACTTTTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGACACTTTTGTTttagtttagtcccagacccagaggaaaatccttcaaatttcttaagtaaatccttaaaaagtgtaatttacaccagagcaat
tgacctggtgtaaataaactgcagcatgagaagaagaagaaaaaaagaccattattacttcttttttcggtgaacattttgtttacatgttttgcaggaa
atgtacttttcggtttgtatggatgagatgctgtaacagaaacacatttccagggctttctcgtgtccaatccgtgtgcaatgcaattgcaatgaatagt
ccaagattttcttaccttctcatcacaaccaccctcttccccaaggttggaacttcagtttctttaattacttctcccacatctcatgagctagtgggta
acat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1328 chr13 97492755 97493061 RIP_Alu_chr13_097_01 0 - 238705 NA NA SINE Alu Y ttgcagtgagctgagatcaggtcaatgcactccagcctgggcgacagagtgagactctatttcaaaaatcaaaacaaacaaaagaagatgggcataaaca
ttttgatgagatccaatttaaaaaatgtttcttttatggtctgtgtttttgatgtcatgtcaaagagctctttgcctagccttaagtcctaaacacacct
tcacatgccttcttctaaaagtgttttatgtattccattaacattcatgacttttttttttgagacaaggtgtccttatgttgtctagtaggcaggccta
gaactcctgaactcaagggatcctcctgcctgagcatccccagtagctggtcaaagccaccatgcctgaccatggcattttaaaattaATTTTTGAATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATTTATTTTTGAATCCactgtgaggtttgagtcaaacttcactttgtgcctacagatgttcaattttccagcatcatttgtgagatgactatctttcc
tctattgaattgatttgcacctttcctagaaattcattaggcctattgcactggtctgtttctaggttctccattctgttccattgatttatattctgtc
cctcttctgctgccatgctgtcttttttttttttttttgaaagagagtctcgctctgttgccctggctggagtacagtggctcgccatctcggctcattg
caacctccgtcccccgggttcaagcgattctcctgcctgagcctcctgagtagctgggattacaggcacgtgccaccgtgcctggctaatttttgtattt
ttagta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1329 chr13 97519251 97519557 RIP_Alu_chr13_097_02 0 - Yb8NBC570|pAlu13-97557786 CAGGTGTTGTGGAAGGGAAT ACGAGGTGATGGCAAGAGAG SINE Alu Yb8 ctaaaaatacaaaattagccgcgcttggtgcccgtaatcctagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcggt
gagccgagatcgcgccattgcactccagcctgggcgacagacagagcgagactttgtctcaaaaaataaaaaataaatttaaaaaaaggcttcacaagaa
ttaaggcccttgaagagtgagaaggaggtccgttttcacactgctgataaaaacatatctgagactgggtaatttataaagaaaaagaggtttagtggac
tcacagttccacgtggctggggaagcctcataatcatgacagaaagcgaagacacacctcacgaggtgatggcaagagagactcagAATCAAGCAGAAGG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAATCAAGCAGAAGGggtttctctttataaaagaagatggtctcgcgagacttattcactaccacgagaacagtatgggggaaccgcccccatga
ttcaattatctgccactgattcccttccacaacacctgggaattaccggagctacaattcaagatgagatttctgtggggacacagccaaaccatatcag
aatgagaaagcaattcaaggcagagagtaaaacctgtgcatagctatggaatcctaaatattctgacgtcatcaaggaactgcaggatgccccgcgttcc
tgaagaacagggtgcatggtgggagggcaggtgctggcaagtccgtgtggagtgggcacggcaaacacccagcaggtagcggagtgtggactctgttctc
ttccct UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 478 158 NA intergenic
1336 chr13 98476281 98476352 RIP_Alu_chr13_098_01 0 + pAlu13-98514816 NA NA SINE Alu Yb9 atggaaaatagtctggctgttcttcagatggttaaacccaggttaccgtatgatccagcaattccactcctagatgcccaacgttgaaaatatatgttcc
cacaaaaacttatacatgaatgctcttagcagcactgttcataataaacaaaaattggaaacaacacaaatgtccatcaattgataaatggataaacaac
tacagaatacaatgaaatattatgtaccaacttttaaaaaatgaagtatgatccatgccacagcatgggtgactcttaaaaccatgctaagtgaaagaag
ccccgcataaggatcacatagtgcatgaatccactgctatgaaatgtccagaacaggcaaatatctagagacagaaagcagattAACAGTTCCCTAGGGC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACAGTTCCCTAGGGCtagggggttgggt
ggagcagagttccggggtgatggctaaggggtccagtgttcttttggaaagtaataaagatgttctaaaattgactatggtgatggatgcacaactctga
atatactgaaaaccactgaacattttaaatggatgaatcatttcatgtatgaatcatatcctgataaaggtgtttctttaaaaacaagacagcacatatc
agagggtacatcaatccaaagttgaatttctcttgaaagtaccctaatttcaataccgttatctttccaaaacatatcactaccctaacacagcaaatgc
ccaaaagcactcctggcactgcatatgcagaagagaggacagctaagaatggtaagatgatttcttcatca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1339 chr13 98880628 98880629 RIP_Alu_chr13_098_02 0 - pAlu13-98919250 NA NA SINE Alu Yc1 atggggggtgccaggggctgggggaggggaaatggggagtcagtgtttcgtnnnnnnnnnnnnnnnnnnnnaaaatcaatggctctcacatccgttagga
tggctattgtcaaaacaaaatcacaagtgttggtgaggaggggcagaaatcagaacccctgtgcgctgttcgtgcgaatgtaaaacagtgcggcctctat
ggaaaacactatggtggctcctcagaaaattaagtctagaatcaccttaggacctggcaattccacttctgggtatgtatctaaaagaattgaaagcagg
gacttgaagagagatttacacaatcatgttcacggcagcattattcaccttagctgaaaggtggacgcaacccaagtgttcatcAACAGATGGATGGATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAACAGATGGATGGATAaagaaaacgtgatatatgcttacatcagaatatgattcggccttcaaaaagagggaaatcctgacatattctacaacag
gatgacccttgaggatgttatgccaagtgaaataagccaatcatgaaaggataaacactatatgaatcctcttgtatgaggtccctagagtcatcaaatt
cttagaaagtagaatggggggtgccaggggctgggggaggggaaatggggagtcagtgtttcgtgggtacagagtttctgtttgggaggaagataaagtt
ctggagatggatggtggtgatggttacacaacaatgtgaatgtatttaatgctatgtaatcatgtttaaatggtaaattttacattatatgtattttacc
acaat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1348 chr13 100040078 100040382 RIP_Alu_chr13_100_02 0 - pAlu13-100078613 NA NA SINE Alu Ya3 ggagttcaagaccaccctgggcaacatggtgaaatcctgtctctaccaaaaaatacaagaaactagccgggcgtgatggtgggtgcctgaggtcccagct
actcagaaggctgaggtgggaggatcactcgagcctgggaaacaggggttgcaatgagccaataacatgctactgtactccaacctaggtgacagagtga
gaacccatctcaaaacaaacaaaaaattcgtctagtctgcgtcatctttaattttcctttatcagaagaattatttatctatttgtctcactttcctttg
ctgacatgattttcccccctcaaaaaagagatgaaagtggaatcattctttcgcttcaaaaagttaagaattactgctgtctttaaaAATATTAATATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAATGG
TGAAACCCCGTCTCTACTAAACATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAACCAGATCCCGCCACTGCACTCCAGCCTAGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAATATTAATATGAGgctagacaaggttttttaatacatttcaatttaattatgaagtgtccaagacaagaaaaaactgtgaaaaccaacgacttat
gtacctgatggtttagatttcttttggaattgtacatctgttcaaaatacaattacatctgcattgttggaaacgtttggataaaaaccagtttatataa
aggtttcaatcagtccacatccatgagaaagtagaaagggcaggaaatgattaagggggattattgctaatctgataaacacagatttgtgtctttcgga
gagacagaagtgtcactctctccatagctgtaccattcctaccacctggcccccaagtggcattgctttaacccattgtctctagggaaaatgttctctt
tcgat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1353 chr13 100704957 100705265 RIP_Alu_chr13_100_01 0 + Ya5_545|pAlu13-100743498 AACTGATTTGCCGCTTTGTT CAGGGGTACACTTATTCCCAAG SINE Alu Ya5 aaccccatctctactagaaatacaaaaattagctgggtgtgcctgttatcccagcttcttgggatgctaaggcaagagaaccactggaacttgggaggca
gaggttgcagggagccgagatggtgccactgcactctagcctgagcaacagagtgggactgtctcaaaaaaaaaaaaaaaaaaaaaaggagacaaaaaca
acaacaaaaaaaccccaaaacctagagtggaacaaattcagaatgcttaagtagttcaagagtacactgatggggtctatctggttgtttaagtcaacaa
aatcaccactacctagtttatttatttatttatttttccaggatttcaagttagtttttagctggttaactgatttgccgctttgttaaGAATGAATGAC
ATGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAA
AAAAAAAAGAATGAATGACatgttaaaagctgcattcatgtaatgtaccaatgtgatgaacttgggaataagtgtacccctgtgaaaccattaccatcaa
tgccattgacatatccaccacctctcaaagtttcctcccacaccctttcttattattattgtcaggggacaacaattattggacacataatatatactga
attccaccatccaatcctgtctgtctgttgttgaggttgtttttatttttaatattatataaaaaagaaaaaagacaaggatttaccaactacccctgga
ctctacaatacacttaaatagtaaccagtcaactctacaacattcaattatttgacattttgttggaatttcttaaggtatgaggataaatcatctacca
tacataaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 415 110 NA intron
1368 chr13 102729653 102729959 RIP_Alu_chr13_102_03 0 + pAlu13-102768190|12423 NA NA SINE Alu Ya5 caaggagggaaatttaggtcatcatctgacagaaatatccttttgcaaagaaagttgttttagtggaaatgagactaagttttccaggttgcctgtctgc
actgatgaaattaccttcatcaaaacatgtcttttgggcttatgtcaggcgctcaaagagacttgtttgttgccatggttttgagctgtccccataaggc
tggaacagacactttctaggtattggagtaaggtggctctggggttgagaacagtgacaggtgagctaggagcagcattgtcagaactatgcttcctgta
cccctgctcttctcccctgttcccttcccaagccacgcttcacctaaacaaagcaggtgtgacgttagatggagagaacattactacatatAGAAAACCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAACCTaatttcagtaaaccaggatttcaatcctcattctaccacctcccagtgacgtgactttaagaaatgtacttatgattctgaatat
cagtttactcaagtatattctccaaagtgggaataacctttgtgaatcactggaagatgtgaataaaatcatgtggtaagtactttgcatgatgttatca
tgataagtcctctgttaacattaatttcccttccctttttaggttcatctaagcctttttatcctcaaagaataggtaattaggacatgctatctttgat
gcaaacagtttagagccatgtgtaaactaaacaattaaggtgagcagagaccaggtaagcagacacaatgattaggaaacagtaagttttagccatcagc
caattg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1369 chr13 102807864 102808174 RIP_Alu_chr13_102_01 0 - pAlu13-102846400|79718|Ya5ac2265 GGTGCCGAGCCTTATCATTA TGTTTTCTGTTCCCCCAGAC SINE Alu Ya5 tgcccaagatgcctggtcttaaaaatggccataagattttatctaaatctactgggttgtattaagatagtcagctctccccagaatgaagtttgcagta
ggtatgaacaaatcagttgccagtctattagagcacaggttgtctgatattctacccattctccagattcaggaccaatttgggagcaacctgagtccaa
ggtgcttagtttccagtaccagctcagtcctaagccacatctggttctagattagctaaagaaggtaaagtccatacccagttgttgaggggaacaaact
aaataagaagagtgaatgcacatttatgaaagtgtaaatgaacgattctgttatgaacacaaacatgaccagggtgccgagccttatcattAAGAAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAATAAAT
AAATAAATAAAAGAAACTGaattcatgactcccagtctgggggaacagaaaacattactgagctggagcacattggcccattcagttctgaaatgcatgt
ccaacaggtaggtggagccctgagcaagaattgctactgtgttgaagtcacagagccagagtgcttccatgtagccagagaaaatcttccagagtaagtc
attgctgtggtgagccattgttgggagaggttgtgggtacgtgagacatacaaacatttgtgaatccaccaaaaagaggttaatttttattcctaaaatg
gatagacaggttatgttagaattccttctttaccactgaaggggacaccagatactaagcttgcaacatagtaaaaccctgtctctaaaaaattatttaa
aaattggttg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 60 382 63 NA intergenic
1370 chr13 102942391 102942662 RIP_Alu_chr13_102_02 0 - Ya5ac2300|pAlu13-102980933 AAGCTCCAAAGCAAGCACTA TGTTTCTTAAGGGGGAAGCC SINE Alu Ya5 ggatctatgaaagaaaaacataagcccaggaatgtaattacattggcaaataagagggtttttttcttatttaaatatcttcaacaggtttaatgggtag
gtaataggttgataggtgcagcaaactaccatggcacacatttacctatgtagcaaacctacacatcctgcacatgtactccagaacttaaaataaaata
caattaaattaaattaaaaaataaatatctttaaaagacatataataacaaagtactatggggtttatagtatacctaaaagtaaaatgtgtaacaaaaa
catcacaaagttatgtgaagtggcataatatcctttgaagctagactgtgtactataagctccaaagcaagcactataattacaaaacAAAAAAGGAATG
GCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTA
GTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTG
CACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAATGgaagtggaaatttaaaa
atattttgaaccaaagatgaaatgacaacatattaaaatgtgagcagtacagcttaagcagttattacagaaaaatttatagcactaaacaacaatatta
ggaagaagaaacattgaataatctcggcttcccccttaagaaacaaaaaagaaaggtaaactaaatccaaggtaagcaaaaaactaaaataagtcatagt
aattaataaaatgaaaatacacaaatatatactctgtatattgtacatattatatatacataatatatatttactaggtattttaataaaaaaacacagc
tctattttcaaaatttaagaaatacattttaaaaaatctccagcctaataaatttaaaacaaagattactt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 489 206 NA intergenic
1378 chr13 103959220 103959524 RIP_Alu_chr13_103_01 0 + Ya5-MLS22|239088|Ya5ac2294 CGACTCTGGTGGAGAAAAGC TGTTGCCAGACCTTGTATGC SINE Alu Ya5 ttgcctagcccaatgttcaaaagggtttttttctaggtttccttctaggatttttagtttcaggtcttacatttaagtctctaatccacctttggttaat
tttcatatgtggtgagtaatagaggtttagttatgtacctaagccctggagattatgaacctcacataaatatgagactcaaatgcctaataaaaatagt
aaacacattgactcaggagaaactagaggaaaagaaaatgatttatactcaaaaaccagatttagccatgtaccaagaatatattgtaaaaaacttttca
tttaattaaaattaaaaaataaaattatctagaggaataatttttactgaatttttacccgactctggtggagaaaagcctaaataatttAAAAGATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGATCTTggatgtgtagcaacacaacaaattatgtattcctgtttctagattgtacatcggagaaaataattttgttctatgccttgtatgta
aggcatacaaggtctggcaacaaagcaaaatattcagataagaaggcacatgatatattctgccttttatggtaggttttacttaactttagcaaaactg
gcttcactatttaatctactttctttgttttttaatctgatgccaatttcaatttacagtaaaagggaaaaccttgggcaaattgcctctgttgggcagc
atataggtatcattccataactgattatctttggttatttatctcaactggttagaggaagtttttaataatgtttaaaggggctacagatagataaact
gtaa UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Selective PCR with subtractive hybridization|Trace comparison|Candidate screening NA 60 464 150 NA intergenic
1399 chr13 106722550 106722862 RIP_Alu_chr13_106_01 0 - pAlu13-106761081|Yb8NBC463 GCCAGTGCTTGGGTTTTAGA CTGGCAATGAATTTCCCTTT SINE Alu Yb8 ttattctcatttttatattgtagtttatacacgtatatgtgtatatgactccgactttccttagttttaacaaatgtgttgacattttgaggcaacgcac
gatttacaccctttgttttcttgcctgaaagttttctcaaggcttttgatgattttgagagtctgtgaaatgaatactacctttggatggctgaaaatat
attttgatactcatttatactttctgatgatcctacaaagtcattacatgaactgtatcacacaaaacaggaactattaagcaaactgacttcactacag
ttatgaaatgaacagaattttataaggaatcatataaatgtaagtgaagagatagctccaaaaaatactggcaatgaatttccctttttAAAAAATTCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATTCTAaggtctgcttattttgtcagcaaacatgttaattttatatacgtaccagtgtgtatacatttgtgtgcatatattat
atacatgtacaaatatgatattgagacattcatgtctttgcatgtactttatgcttattttattagccttcaaatgaagtacactttctctctaaaaccc
aagcactggcttaggaagttggagacccgcctgaatgtgagtcctgaggtctcatgattattcttacttataacatatagagagttatgtgctcatatta
attcatttgtcagaaagttcctcgacaaagcatagtttgccatgaagcttaggtttgaaattggagtgtgagatatttgtatatataaatatataaatat
atatatatatat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening|Genome comparison NA 56 543 220 NA intergenic
1404 chr13 107467031 107467032 RIP_Alu_chr13_107_01 0 + pAlu13-107505668 NA NA SINE Alu Ya4 ttccttggtacacattgactagtaacagtgtcctataggaattaacacactttatttcccataattatattttactttatatcttgctatttaattatac
tgcataagtgcttttccgtatgtttgttaaaacttgtggaatagggcattttacacttaaaaaatagccaaacatttgttttgcagctcatacctttcct
tcagcacatttcacattatatgattattgtttcatcaaatcattcatatcttttactatttgagtgcaaaattaactctcattacaaaaagaatagggag
aagaactaccttggatttttatttcagtaacctggctttccttctgagcaggcaaaacataattaaaggtcaaacctggtttAAAGTATGTTCTAATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGAGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGTATGTTCTAATCTGatcgttaggcagtttgtctccagtggatgagcattcttgcactctgattgtttcatgtaggtggtagctggttgcaag
aaaggaggtgggtggctgatatgacgggtgggttcagattttatgacacttcctcatttccaggtagcattcttttcctacatgttgttaactaagtata
atcctcctcctgcctcctgggtgtggcttgtgcaggagtcattcttgacagttatctatgtttggtgccactcgtgagctgcctcctttcaatttggaga
atgctccaggtgtgctctttggcttccctggtgttgcaggaagtcagggaccccgaatggagggaccgggtagagctgtggcagaggaacataaattgtg
aaga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1421 chr13 109610509 109610807 RIP_Alu_chr13_109_01 0 + Yb8NBC437 GGCGGTGATGGTAAAACAAC CTTCCCCAAGGAGCCTTTTA SINE Alu Yb8 atttggccctaagtaggaaagaaatcctatcacatgctataatatagatgaaccctgaggacattatgctgagtgaaacaggccagtgacaaaaggaaaa
atactgtatgattccacttacatgaggtgtctacgggggtcaaattcacagggacagaaagtagaatggggggtcaccagaggctggcaggagggatgtg
gagtcagtgtttaacagggacagagtttgagtttgggaaaataaaaaagttcaggagacggatggcggtgatggtaaaacaacactgcaaatgtacttaa
tgccactacactgtgcactgaaaaattattaagatggtaaatgttatgttatgtccattttaccaaaattaaaaataacttttAAAAAAATTCATAGGGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAATTCATAGGGGcagggatgattcagaaaacaatgtcttaaaaggctccttggggaagctgttactttttaaaaagaaagattgagcaacactgttc
caacgcttgctgaagaatcgagtggcatcaccttgctcacaggaggaaaggcaaccaccacagtgagtcaggcaaaatataaattatctctgcaagcctg
gcattatctcaccatggttttgcaccacaattttaaaagagaatagctgactcttttttctttttgagacaggttctcactctgttgctcaggcaggagt
gcagtggtgtggtctcagttcactacagcctcaacatcccaggcttaagtgatcctcccacctcagcctccctcgtagctgggaccacaggctcacac UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 498 183 NA intron
1423 chr13 109874812 109874813 RIP_Alu_chr13_109_02 0 - Ya5-MLS70 AGTTACTGGATGCATTATATTGAGGA CTCATGATCAGTTACGGTTACTTTCA SINE Alu Ya5 ttactccgggggctcccctttcacccttgtctcctttacgtccctgcagtcccgggaatccttgtaatcctggtggcccattgtacccctgggggcccac
tggcccaggctgaccctgtgggaacaacaaaggttcaatttccacgattaatcacaatacatactcatgatcagttacggttactttcaaaactacattt
ttttttttgtttttaaagagctataatctacagggaacattatatgtaaactatcgtctactgccatgatagctaacaaaagaagtcatagagtttaaga
agagaaaatatggaatgtgagaaaaaaattatcctaaattactaaagtcatgtcattgtgaaatgataatactgggttgggatgAAAGAATTAACTTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAATTAACTTATTtgggttctttttaaggtcatttcagtataaaaaattttccaaatgaatttctacaattttatctctattttcctcaatataat
gcatccagtaactgtggaaatgtgtattgcattcaaatatcaaaaagaccctcagatgtttaagtggttaatctctccttttgttcacatagagggaaaa
aaaagagcttctgaaacatataaaaatgtttgtccacactaaataggatggctgttattaaaaaaagttataagtattggtgaggatgtggagaaatcag
aatctccgtgcgctgctggtgggcatgtgaaatggtgcaggtgctttggaaaacactctggcggctccttaacacattaaaaaaagagaatcactacggg
a Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
1439 chr13 112041799 112041800 RIP_Alu_chr13_112_02 0 + pAlu13-112080437 NA NA SINE Alu Ya4 tattccatctgttatggtagtctgtgatcagtgacctttgatgttactattgtaattgttttaaggtgccacaaacagtgcccatataagacagtgaact
tcacggagaaacattgtatgttctgactattccatcaaccaatcgtctccccacctccctccttctcttcagtcctctctattccctgagacacaacaat
attgaaattaggccagttaagaaccttacaatggcctctaagtgttccagtaaaagaaagagtcgcacatatctcactttaatcaaaagctagaaatgat
tagctgaaggaggaaggcatgtcaattgctgagatgccaaaacctaggcatcttgcaccaaatagccaagttgcaaatgcaaagaaaaaaTTATTGAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATTTATTGAACAGgaattaaaagtgctactccagtgagcacacaaatgatgagaaagtgaagcagccttattgctgatgtgaa
gaaagtatgagtggtctggacaggagatgaaaccagcacaatattcccttaagccacagcctaatccagagcaaccccccaactctcttcagtgaagaga
gttgtggagactgagagaggtgaggaagctgcagaagaaaagttggaagctagcaggagtttagttcatgaggttgaaagaaagaagccgtctccataac
ataaaagtgcaaggtgaagcagcaagtgctgatggagaagctgcagcaagttctccagaagacccagctgaggtcactgatgcaggtggccacaataaca
acagattttcaacgtagaag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1443 chr13 112568968 112568969 RIP_Alu_chr13_112_03 0 - pAlu13-112607592 NA NA SINE Alu Ya5 gcccaactcggaagaaaatctcataaaagatacaaaagaatcaacaggtagctctgtttgatgacgttcatggcctggtggcattcaggaattattcaat
taaaataaatgaagacaaagaataagttctagaaaacttaaagcttttaaaacagtgaaataatatttgaattggttctcaagatagacctggtaaaaac
tgatttaagtgatgacgaaggataacagcagtgtttagtaaagaggaatgaaaacgactaaagcaggtaaataatggtgcacaggacacatagcaggact
tttgtgtttgaacccagcagtctgagggacaaacacacagggagagagaggtcaggctaaacaaggaacgaagccgatttctgtttAGAAGTCACCCAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAAGTCACCCAGAaggggctgctgaagagggactttctccgaggtcagcgctggtgtctgcttgtacggctagttaaatacctgaggcatttaagcaggg
atggtctctgacatctaccgaatgcctggtgtggctctctcaggaagcacagggccccaccgggcctcccacacatgcctgtgctgcctttaatttaaaa
tcgagggaagctcccatgaatccagtcaattcggaaaacatccctggctcaatgggccaccctgacatggcaaccgagggaacacagcaaggatgtgcgt
caggaggcgcacacacccttctaacacagagctagctctggggtgtgtggggcagcagcggctaacagcgtttctaccgacaaagcacacaggaattca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1445 chr13 112838950 112839264 RIP_Alu_chr13_112_01 0 - pAlu13-112877490 NA NA SINE Alu Ya5 caacccttggcaaaccctgtcccaccactaatctattctttatcacaatgataacaacctattgagcatgtcatgtaaatgaaagtgtttattataggac
cttgtgaaactagcttttcattcaatacaaagcctttgaaattcatgcaagttgtatcaatactttcttacttgttgttgctgacaactgttatattgta
tgggtacacccagcaaaagacatttatcttacttccagcttttggcaattaagaatagagttgctggccaggcgtggtgcctcacgcctataatcccagc
actttgggaggctgaggcgggtggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaAAGTACAAGAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGTACAAGAATTagcctgccatggtggcacacacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctg
agaggaggaggttgtagtgagccgagattgtgccattgcaccccagcctgggcaacgggaagactctgtctcaaaaaataaaaattaaaaaaaaaaaaaa
agactagagttgctatagacatttatgtacaggattttatgtggaaataagttttcatttctctagggtaaatgcccagaaatgggattgccgagtcctg
tggtaaccttatataactttataagaaactgtcaaattccttttcaaagtggccgtgccattttgcattcccacgagcagtgtatcaaagttctgctttc
tccgtgtcttaacc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
742 chr14 20605984 20606297 RIP_Alu_chr14_020_01 0 - pAlu14-19526174|55315 NA NA SINE Alu Yc1 ggggaccctcgagtcaccgacactctccaggttctctattacgagggcccgcgagctaggagagtgagattttgctaccccctggtgtccattccgtaaa
tactgcccaggggcgggttacaggggccagtgtttaaaaaaccttattcacctgtctcaaacctagctcatctattctcggtgttgagagtgtctgaacc
tttcctcaccaggccttccattccttaaactgcagcaaattgtttagggaacacttggtagggtccaaggttgtccattggactccaaggctcactactc
ttaggtagtggaatataaattaatctggctatgggggtccacaaactcctggaaaaagggagtggatcatttttttttttcatggagAAAAAGGGGAGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGGGAGCCactgaaagtttttgagctggtggggtaagggagtttggatagagaatcagggatgcagttaccccttctttcca
ggagttttaaaatctgtgctaaattacaatggtttattttaagtaagtaagtgacatgtggttgcagcagttaaataccactttctccaaagaatgcagg
ctcttacctaaaagtgtgtgtgtgtgtgtgtgtgtgtacgtgtgtacacaacagagtatgtgttgatacgtgtgtttttagtgggggaatatgaaagggt
aaagttataagggagaaattagaggctgggaatagaccagacttagaagccttctcattcacaaacagttcttaccatatttcacccatttaagactctt
tggggcttctcaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA promoter
776 chr14 25075652 25075887 RIP_Alu_chr14_025_01 0 - Ya5ac2369 TAAGGGTGAATGGGAACCAG CAATCCAATACCACAGGGCT SINE Alu Ya5 agtgaactagagagcattaaaaattaagaaaattaaagttcttctttgtttcctccttttctggaaaatttaatatgaaagccgttcagttggaccatct
gggatagtaatgagggaagccacgatggcccaaagctatgcattagaggccttggaaataagaaaggggaaggtgggggagagcgatcatcatgggcatc
agagcctgagtggggtgaggagggtgtccaggtgcaggatctggaacatagcaaaatgtcacatactgagcaaggtaagcagtgcattacacacagaggg
attgatcaaaagattgactatgtaagggtgaatgggaaccaggttcctcactaatgaggaaaggagttacaaagaaagaacactAGAAAAAGCCCTGTGG
GGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGTCTGTAGTCCCAGCTA
CTTGTGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG
ACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAGAAAGAAAAAGCCCTGTGGtattggattggatgcatccatgtgaaatcagattttttcttatacagat
aaatagatgtagtaataaatacagattgagtcaattgccaacatgatgtccccatcaccctaggataatttagtgtgcattcctttcctacaaagaagga
tattctcctacctaagccaatccagaaatgcaggtttttccttttttaggtgtctgcctggctgccactgccacctcagcagtacatgtctgtcactgga
gctggttttagggcaggccaggagagagaaaagagggggagaaacaacaacaaagatcttccccattctctcaggctcataggaatccccattcctagtc
ctctggtcagaaagacaggattcccccaaaaattt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 341 90 NA intergenic
777 chr14 25216954 25217297 RIP_Alu_chr14_025_02 0 - Ya5ac2389 TCTTTTCCTCAAAACAAATTCC TGCGTATTAGTGAAATCATGCAA SINE Alu Ya5 tctaacctgggacagatatactcatcaaaaattctggggccacaactcacatcttcacaaccagagataaaaaaatctttactgctgcactaatttctag
ggaagagtttttgtttgtttgctttctattttctcttcttctagaaattagtcccagtcctggaccacttgatatagtaataggaataaggtagattgtg
gaatgtgtcgattgcttacaccaatggagcaggcaatatgttagtaggcttcccaaaatcagatggttgaccaggatacaaattacccaagtattcacct
gagaaagagagaaatgaatgctgataaagcaaaataaatgtcctttgacatatcttttcctcaaaacaaattcctatatcagattaTAAACCTTAAATTC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA
AATAAATTAAAAAAAAAAATAAAAAATAAAAAAAATAAATAAATAAACCTTAAATTCatagacatgatttaatagtaatgtttcaatatgatgacatcta
tttaatactagaagaatttcagtctaattttgcatgatttcactaatacgcattttagttaaaatgatataaccagagtcatggttaaggctcagttgtg
ttcccccaaaatttatatgttgacatccttgctgtgtctttaatataaagacctgaatattgtcagtagtataatgtaattatccaaatcccaccgggaa
aacatttgggaaaaaataattgtttttttccattgatttctcaatatgcatattcctaatctcttacatctatgcattaccactgattttaaaaactacc
atttttatcacaggctgcctccacatcaccatttttcttccat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 500 168 NA intergenic
781 chr14 25771458 25771758 RIP_Alu_chr14_025_03 0 + 14794 NA NA SINE Alu Ya5 ggggctagtccatcccatctaccatgtgaggacacagagagaaggggctgtctaagaaccaggaatccatcttccaccaaacaccaaatttgccagcacc
ttgatcttggaattgccagtctccaggattgtgaaaataaacttttgttgtttataaactacccagtatatgatattttgttagaatagaccaaatggag
taagacaccaaataaaataataaatttgttacaaataatttattttcaaattggtttttgtttatgcaggctaaacagtctaaaataagaaccatatggt
atttgttagtcctgagttgtttgtttttctttttgcctttacaaatttctaaatcttgttgtaagatcaaatgtatttataaataaattGAAAGAAAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GAAAGAAAGAAaagaaaatagaaaaagtaagcaaccatttatagtatatatgttatatataaaataaaattgttataaaattaaatatactctctatttt
ggatttttttcttaatatacgaaaaccattttccttttccatgaaatatttcatcatgtcttttcaatagtttcctagtactatattatctgttaaaaaa
tgaaagcttgacttttttgaaaatttctttatcctttgaaactctgagcttttatctataaaatagaatttgtggggagagagaggcaactaaggctgag
ctatgatggagtgtctatgaaaaagagtatgttcttgtcagtgtaactaattctactgaggactagaggacagtcacaatgtgaaactatgttttacaac
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
816 chr14 30332751 30333065 RIP_Alu_chr14_030_01 0 - pAlu14-29252942 NA NA SINE Alu Ya5 ggacaggctgactctcttgtttggggctaatgaagctggtgactttaagttgaagccagtgctcatttaccattctgagaattctagggaccttaagaat
tgtactaaatctattctgcatatgctttataaatggaacaacaatccctggttgacaacatacttgtttttagcatggtttactgaatattttaagcctg
ctgttaagatctactgctcagaaaaatatttcaaaatatactgctcattgacaatgcacctatcacccaagagttccgatggagatgtacaagaagatta
atgttattttcacgtctgctagcacaatatccgttcttcagccatggatcaaggagtaagttcacctttcaagtcttattgtttAAGAAATACATTTTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAATACATTTTGTaaggctttagatgtcataggtagtggttgttctgatggatctgggcaaagtaaactgaaaaacttctggg
aaagatttgccattgtagatgacattaagaccattaatgattcatgggagaaggttaaaatatcaacatgaacagaagtttggaagaagttggtttcaac
tcttatggatgactctcagggattcaagacttcagtggaggaagtaactgtagatgtggtggaaatagcaagagaattagaattagaagtggagcctgaa
gatggagctgacttgctgcaatctcatgatcaaacttgaagggttaaagagttgctttttatagatgagcaaagacagtggtgtcttgagatggaatcta
ctcctggtaaagat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
839 chr14 33359799 33360125 RIP_Alu_chr14_033_01 0 + pAlu14-32279987 NA NA SINE Alu Yb10 agaagccactcattatcatgagaaatcactgtgaaaagactcagaaatatttaaaatctgtgtattttctgcattctctgtctccaggagcagaacttca
ctggaaccagaaaactgctgcgaggacacagaatcagcaaaaggggagtcagatgaagctcctgttttcacatcaggtgcacaacaggaacactcttgcc
tttgggactggaatttctggaaatgtgttggtgaattctcccactccaagggacagagctcgtatgggattttcaaaacaggggtcttgggtgattctcc
ttttttctatgcttcccacagctcactaagccctctgctttggatgtttcatttctttaaatatgttaatgcaattatacatgcattGAAAATTACAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAAT
GGCGTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATTACAGTCttgcaaggctggacaccagtcttcatctgcatgacaaaactttggtctccacaacctccta
tcttaacccagacattgctttccattgataataactctttcaaccaattggcaatcagaacatttttaaatctacctagaacctagaaccccactcctgc
ctcttcgtgtcccacccttctggaccaaacctgtgtatattttcatggtatttaattgaagcctcatgtctccctgaaatgtataaaatcaagctttgtc
caaaccaccctacgtacatgttctcaggggctcctgagggccgtgtcatgggccatggtcactcatatttggctcaggataaatttcttcaagtatttta
cgtagtttgattcttttcatcaacag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
845 chr14 34197791 34197792 RIP_Alu_chr14_034_02 0 + Ya5-MLS65 AATTAGAACATGTGGCTCCCTTATC TTGGTCTCCTTCAAAGCAATTTAC SINE Alu Ya5 tgcagccctgtcagcatgttgattttagctccttgatttcagtgaaggccctttttcacttctgacctccaaaacaaaacgataataaatgtgtgttttc
ttaaaccattaagtttgtggtaattcagcgcagcagcaataggaaacaaatatacatggcattctcaattctgtgagctattccaggatccctgaagcaa
atcctcctttttacttaagctaatttgggttggattttggtctccttcaaagcaatttacaagatctcttattataaaacagtacttctcactaggacaa
aaatcagaccttcagaaataaaatacatgtgctataccctaaacatgtcatgacaagatttcttctgagtgatgaatggacaggAAAAAGAAATTTGAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTGAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACGGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAGAAATTTGAAGaagtataacaaactagcatttgacaggtaagagtatgtcactgaattaaaatgtagataagggagccacatgttctaatttccctct
gatttcttctttgtctcacgggttatttggcagtgtgtgattggattccagaaagatattccaaatatctttctgttgttgacttctaatttaattttat
tgtgttcacagaagatcctttgtattatttgaaacttttggccaggtgtggtggctcatgcctgtaatcccagcactttgggaagctgaggggggaggat
cacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaaaattagccgggagtggtggtggcac Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
847 chr14 34375054 34375372 RIP_Alu_chr14_034_01 0 + Yc1NBC09 GCCCAGCTGGAAATAGCTT AGAAATTCTGCATGTGTCTCAG SINE Alu Yc1 gtttctctcttgttgccaggctggagtgcaatggcgtgatctcggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccg
agtagctgggattacaagcatgcgccaccacgcccagctaattttgtattttcagtagagacagggtttctccatgttggtcaggctagtcttgaactcc
cgacctcaggtgatctgcccgcctcagcctcccaaagtgttggattacaggcgtgagccactgcgcccagctggaaatagctttttatgaggatagtctg
gaatgtatataccttccgctaaaaagctatttttagtagccatttaaatttatatctcaaaaattcaatggaccaaaagcaaattatAAAACTTTCTATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACTTTCTATAactgagacacatgcagaatttctacagggtatttggggtagaaggtaaatagttaacagcaaagggaaa
gaagatctagaagcctgggaagacctacttgaaataagagaccgaccctctgtttgggtctctaaaaattgaatatgctgaatctatagcatacttcaca
actgctccccattctgcctcattaacctttattttctagtaatacaattgcaagaatatttataaaaaatactatgcttggacaattaagtcaatatttt
ctaacagtgaactaatttgaagtttagagttaaaaaacaaaaaccttaaattaagtttatgtgatatctcattttaagtggaagaaaccagagcatttga
gcgagtcagctattcaca UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 63 490 159 NA intron
847 chr14 34471164 34471474 RIP_Alu_chr14_034_03 0 + pAlu14-33391352 NA NA SINE Alu Y agggttaatcctttcctgttttaatgtgtatgatacgaagtgtatctgcctcaatttttatttatttattttttgagacagagtcttgctctgtcgtcca
ggctggaatgcagtggtgcaatctcggctcactgcaatctccgcccttggttcaagtgattctcctgcctcagcctcctgagtagcagggattacaggtg
tgtgccaccatgccaggctaatttttgtatttttagtagagatagggttttgtcatgttggccaggctcgtctcaaactcctgacctcaggtgatccgcc
caccttggcctcccaaagtgctgggattataggggtgagctaccatgcctggccctgtctcaaattttagtgcagtgcaatctatcactAAGAAATTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCACCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCCCAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAATTTCAaagctgttatttaagatgttaattatataatatacaaatatcacggttgtgtggtttaacctgttaagacatgcttaga
aaagagaacgtgagtatactgactttattacaagcctatattggaagatatatggtaatacataggtatgtataactccctgataacaataggttatgca
ttatttaaaaacataatgtcaaacagcattacagttggtaatttatttaaagactacaagcttgcttgtctgttcactactgcatttctatcctgaacat
ttctggatatattactatatatcaggtttatatacttttactataggtatataaatatttgctgaatgaataaaataggaagataattttaaaaggtaaa
aaatggcatt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
870 chr14 37429394 37429395 RIP_Alu_chr14_037_01 0 + pAlu14-36349682 NA NA SINE Alu Yi6 tcttgtttgggaggagcaggagatgaggtcaggaaggtgggagatcacactgaatataattattcaatgccaggctgaggattgtcaatctatttttctc
cctataataacgttagggtaaacaaaataaaattatttcaagaaacatatacaatgaaataataaaacataaatgaaaactaccagacaaggggaaatac
aaattaaaataagaagacaagaacagatgacattgctaaggaaaaactatttataagcctcctagtggccaaagcaaaaaggaacataagattgataaaa
ttattactgtccatgagaaaaaaactaattctatgagaaaagtgacaccaaatttaaaagaaatttcttatgtgggtttAATAATGTATAGAAAATTCTT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAGAAAAAAAAAAAAGAAATAATGTATAGAAAATTCTTTtaatcatatagatttatttaaatgtccttttataaaataagagagaaaatactgtgtatag
tggtgctttctaagtagaatgtgcatacagtcacctgggatctcattaaaatacaaatcctcttttgattactatagccttatagtatgtatcaagttgg
gtaatgtgatgtctccagctttgttctttttgcttaggattgctttggcaattcaagctcttttttagttccatatgaattttaaagtagtgatacggtt
tggctgtgtacccacccaaatctcatcttgagttgtagctcccataatccgcatgttttgtgggagggacccagtgggtgataattgaatcatgggggca
gtttcccccatactgttc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
875 chr14 38087734 38088034 RIP_Alu_chr14_038_01 0 + Ya5ac2370 ATTGCTCTAGCCACGCACTT AAAGAAACTGACGGGGTCCT SINE Alu Ya5 gtatctaagacatactttatagaggctacaatttgaataacaggaacaaagaagaaataactcctttgtccaccttcaaaacttttgatacactgcaaga
gcctgtaatttgtaaaccatttaatctcacagggggaacctaggattctcagagtccgctccatcagggcaactatttacagcagactttcctcagatat
acttgttcactttgtgctactccctttgatgtaggtataattaagctgattgcagccccagttggccactatgttcaaagaaaaaacccagtagcaattc
aaaatgattgctctagccacgcacttttctctattccttgcgtaccttgaggatggttgtatagccccaaggcacttgctgttAATATTAGGGAAGGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AATATTAGGGAAGGTTTtattatttcgtaaatctccatcagccccttcctctctcttcgtagtggctttttctaggaccccgtcagtttcttttgacagt
catcaagttgcttaggatgcagaaaagcctgcctgccatcattccccacatctgttcttgtaactacattctcttccacatgtgtttcctctctgaggca
gtcgagttgctgaagctcagtgagctgaggtggattctaaattacgtccagacctataagtcaactaaataaaggaaatgtaagggggaagaaagtaaat
cttcaattcttcttagtaatttttaacttcagagaaataaaagaacacattgtgataagtttgacatcactagatgaaaaaaggccataagatatatgtt
UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 487 170 NA intergenic
885 chr14 39382713 39382714 RIP_Alu_chr14_039_02 0 - pAlu14-38302987 NA NA SINE Alu Ya4 ctaaagggcacattgcattaagcacatgatttacagctgtgatggtttagcatttgctctgctacttgagaataatggagagcaggttcttttaactaaa
gatacaatcgatcctgggagagcaaggagcaaggagtcagcaagtctagacacattccagagccatgagccctggattctatacaatccatgaggggttt
tatggcctgggctcagattatggtgtatcagggtattcttccaccctttagcacagagcttggcgctccaaaggccacaaggggttttagaccctggacc
ccagacattttccaggactcttttacattatgtcagacatgcaagccctgcctcagcttctcccaacactcagcttttcccaaaaGAGTTGATAAGAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAGAGTTGCTAAGAATCtcttttctagatcattttcaatgagtttgtattggtagaaaatactagtatctagatttattctgtattccagttg
tccatgaagaagacaaatgacacctggctgtaaaacttaacaagatatgttgtccattaagtgaaaagtgcccagcttgcaggcatgagatacaagaata
aagcttcttcaacaagattacttcagcacagcatgtgtcaaataagctaaaccactctattacctctcagaaattatagctgcattatcaatatccaaag
aacttgtctacaatttacatttccagaactgggcatacaatagagataatttcaaacaaagatgtctttattttccctgggatagacatgaagatgaagt
agaaaagat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
887 chr14 39662195 39662196 RIP_Alu_chr14_039_01 0 + 31370 NA NA SINE Alu Y tgcatatgaaacctcttaaagagccaataagattaaaaatagatcaggattaaatagggtattaagatttctactaccagcataaaagtgtaattcattg
tactgtaggcagtgggaaagaggttttatggttaggctttccttttttgatctacacaagtcacactggacttagtgaagttttcacactacatataaag
cagctgaatttatatcttcagattctaaggttttctacatcctggataatgtttaccttttagtgtaatatacagccaccccacttaagaaactggtctt
attaacctttgaaaatctttaagccttaccctgtgtttaacatattcatgcttcactgagtaatgttctgtgattcattctcatcgAGAAAGAAAGAAAC
GGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTC
TCAAAAAAAAAAAAAAAAAGAAAGAAAGAAACtttaaagctagctcaagttcacatttaccttcttagattatgccatgacagatttcagtgcttctgat
gccatctgtttggtaggaaagacatttcctttgagaggcaggtgaaagggcaacaagaaagtcagctagtagataatctttagtttagggcctgtactct
agtggtaaaaagtcattctagaatttaatgattactttgctttttctgtgcttcctttcatactgaccgagttgagcatatagctgggctaggcctgacc
aaaaaagaaaaaaaaaaaaccactttggcactttgcaagaaagacaagttgtctctgtttaaggctgcttttaccatgggaaacaatcagaataaaagat
atatagtagataagaata Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
902 chr14 41556085 41556386 RIP_Alu_chr14_041_01 0 + 20305 NA NA SINE Alu Ye2 aaaaatttaggctccacactgaacatcctcagggaaagatgaaagaataaaatgccgtagagattgagatgcacagctggataatgtagagatagatcat
ttaagtcaaacatgaggtgaaagctgggaaggcttttgcacctgtgcttgactggatgctgaatttcgaacaagttttctgaagggcagagatttttgtg
gaagcatgagttttccactacccaacatagaaaggataaaagaacttgcagttttaggagactagatttacttttttccccaatattatggcctgttctg
gaagtaagtgacagaaagacaaagatcgaacttatgcttacatgaacagctcagggccaaggaaaatgtagccaaatttagcacacAAAAAGACCTGATC
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATACTGGCTAACACGG
TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAACCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAGACCTGATCttacgcaaatttaagcagaagagaagcaacctgaggaaaaacaacattagttaagcaaaacaaaataaacagtaatattgggtgg
ttagagtgaggtccctgacccacattcgcgtcttcatccataggggagagttagccattgggagttgatttgacatgattgtactccccgcgaagacatt
ggtaatcagaacactgagcttcaaattagggaagagttaggtgtagctctgcagaatcaggaagtaccactggtgtcggctattctccactgttatacac
agaaatagcaagaaccaagacatcccctcttattgttgtaaaaaatgtgaacgtcctctgagtgacagtgccgggaaactggcaaagtctccagaccggt
g UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
928 chr14 44957915 44958217 RIP_Alu_chr14_044_01 0 - Yi6AH110 AATCCTCTTACTTTTGCAAGATGC TTAGTCTCATCTAGGGATGCCAAT SINE Alu Yi6 catacagaaagacataaaaagcacaccagattggctacagcttgagactagcctcacaaatgctttttttcaattaatcaaaattttacagaggatataa
acaggaatctttattattcattcaacaggtttgcacagagacagagaggccagaagtctaactggtaagcaattcttacctttttgccaacatgtcaggt
tttggagttcctcttccctgagtggccctagcaaccactgagaggcaagctgcatcacaatggaaaatcacagaaccacaagcaaaatcctcttactttt
gcaagatgctacccagggggtggcatggggtaaccaaattaacattttccattctggccagagcaaaatatgtgtgctttaaatAAAAATATTGAAATCT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAATATTGAAATCTttttagaagcttctgcatatcaattggcatccctagatgagactaatttgggagccatctttccttttttactttttttttt
ttaatgcacttcaatgcactgttgttcatttggaatgttccactgtaagttacctttagtaatgttttgccatttccgtaagactttgctccctcccagg
cctaacatataagccagaaggaactcagttttccagaaattaagaattctatttttaactaaaatatcggctttgctttcaggttccgttagtgaactta
gccaatgattttttttctacctaagcatgcaagaaaaatgaaacaaaggggtagaacacaaaaatccctgtgaattttcaaaagccaaattttacagccc
ct UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 60 479 161 NA intergenic
931 chr14 45412162 45412476 RIP_Alu_chr14_045_01 0 + pAlu14-44332350 NA NA SINE Alu Yb3a1 tctcttgaagaaactcaagagtttccttattttctgtgctttgaggagggcccaagtcctctaagatgggtccctgctttgtttcaaaatgagtatgaag
aatgcgaggtatgaaaaactcataaggcccagaaaaatatgagaacaaatcctcagtcacccctcccatgctagcaccagtgtccctgggcaattgttta
aaggtattttatttcttccttgtagttttcaggctagctgataaattacctaaaatgcaattataagttgcacaaggtgaccctcactcattatctttat
gttcctgaaatttttgatacaaaaataatgtatagccaatcaatagcttatgatcaacttaagaactgctccttctttttttctttaaaaagCCACTTGT
GGCCAGGCACAGTGGGTCACACCTGTAATCCCAGGACTTTCGGAGGCCAAGGCGGGTGGATCACAAGGTCAGGAGATAGAGATCATCCTGGCTAACACAG
TGAAACCCCCTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGGGGGCATCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCAGGAGGTGGAGCTGGCAGTGAGCCAAGATTGCGCCACTGCACTCTAGCCTGGGCGACAGAGTGAGACTCCTTCTTAAAAAAAACAAAAACAAAA
ACAAAAACAAAAAACCACTTGTaactgctgttaattagaggcctggcaattcaggccaacttaaatctgtgtctccttggttgcagtcctcaaatttggt
ccaaataaactctctatttatgttaattttgcttcagtttcttcctttatgttgacaaagtccaaagactaaatctcagttttatagtcttacaacttca
gaagtctgctgttgtgtcttgttttctaactgctttatatgaattctccagtgcaataatacattttttttttttttttgagatggagtcttgctctgtc
acccaggctggagtgcagtggcgcgatctcggctcactgcaatctctgcctcccgggttcacgtcattctcctgcctcagcctcctgagtagctgggact
acaggtgcctccca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
933 chr14 45647687 45647993 RIP_Alu_chr14_045_02 0 + pAlu14-44567875 NA NA SINE Alu Ya5 atttctgagcctgtggaggtacagggggcattcctgggcctccaagagtgtggagatgcctgggagtggccgcggcttggacaggtgcagccatacccag
gagggtggggctcctggctgctcccagcccctaagagcacagatagcctaggatagcctaaggagtgtgaagctcccaccctgccaactcagaaggggtc
agggcttctgcctgttctactgctcctgcaagctctgtggagcacagagccctggccaagccttccccactgaagctagtgtcatggcaatggccactct
ggatgggccacagctgccattagtattgcagatgattgagataaaaaaatcacctaacaagtggaagaagagcaaaatggctgaatAAAAGCCTCCAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGCCTCCAATTGgttcccccagcaggaacatgaaactgaataactattcacataagaaagcacctttgtaagaaccaaaaatcaggtgagc
aattacggaatctggttttaatatcatgtcaaagaaaaaggcactgaagagggtaagacagtcttgggttgctgacacaactcctaccctatgctttccc
tgtggctgcctggtggagagagaatctgtgtgtactgaagagcacaatgattgtgggaatttgcattgtaactgcatgctgccatgttacagcagaaagc
agcacaaggaataagagggatgattcctctctgttctgcatgctcttattgcttattggtctgtatgatccctccagtcccatagaaggagcatgtagac
cagaggg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
950 chr14 47896572 47896885 RIP_Alu_chr14_047_01 0 + Yb8NBC466|Yb8AC818|14503 TTGAGGCACTAGACTTACAGAATTG CAGGAGCTGCTTTCACCTCT SINE Alu Yb8 agaagtctgagatcagggttcctgtgtagtcaagttctggtgagggacctgttacaggtttgcagacagccacctttttgctgtgttctcacatggtgga
gagtgagctctggtatctctttctcttcctattagggcaagttctgttgagttctattgagtcagggctcaactcttttgacctcatttaaccttactca
tcaccttaaagaccctatctccaacacagtcaaatggagcatgacagcttcaacacacgaaatttagggagacacaattcaatctataagcactgtttcc
ccataatcatgtacatatgaatcttccctgtaccatcaggagctgctttcacctctcccttaattagattcctagattattaaaaatAAAGTACACACCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGTACACACCTtttcaattctgtaagtctagtgcctcaaaaataacaaatgtttgtttaaccaaaaatttctggttggatgtaca
aaaatcatctcagctatcctgtaagaagagaaagttaactgcatgtgaaattaattgtaactgaagaaattgccaatatagaccatagagcaggccatgg
tctacaagagacatggtagttgaaagacctccagtaatctacgtatttcattaaaatatacttatgcccactggcctcaaacatctctgctatttctaaa
aatctcttcaatttgtcagaataaccaatgacaaaataatggagaactctgccataaaagagcaagagaaaaagtcacatagtccaaaatgaataacctt
ttaatttacctta UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 60 427 92 NA intergenic
959 chr14 49028206 49028344 RIP_Alu_chr14_049_01 0 - 12195 NA NA SINE Alu Ya8 ccaaagagcctcttgttttcctggcccctccttaacaatttacccgatatcaatctactgctgataataaatgaaaaaggtaatgaaaaaggggagtttt
ttttttttaaacaaatgtcaaaaaaaccctttaagtatttctgacattaaaaaaaatgttgttggtccttccttatttgcatggagctttatgtggttca
gaaagcccatctgtaatccatttgagtggaagtcccatttgtcactgctgtcaggatggtaaaacacatttgaaacctttttgctttaaagaaaatagaa
ggcttttctgcactttacattgagctgaagactttgccactctcagggaaatgtcaattctgagaaagacttgtgcaaaatgagagtAAAATAATTAGTC
TAGTCCTTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGG
GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAATAATTAGTCttgaaaagtgattttactttttgcttaaacacgttccattttccccaaa
gtccccaggttcctaaaacaacaagaagtcatgagagggtgagggttggggttgtcgtcgcaagcagtcttgacttcatttatccactcaatggagggat
cagcagcatgaacattacaaaatggcagagaatccacacagcacctccatttagcattggggtgtgttttatagccgcttttagaataaacattttgggc
caggcgtggtggcctgtaatccctgggatcacacctgtaatcccagcactgtgggaggccaaattgtgcagatcacctgagctcaggaatttgagaccag
cttggccaacatggtgaaaccccatctctactaaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
960 chr14 49188637 49188777 RIP_Alu_chr14_049_02 0 + pAlu14-48108825 NA NA SINE Alu Yj aggatgatcagaacaggccgggctcataatttagtgtgacttgagcacaggcttgaagcggaagagggacttagtcaagcagatacccagaggaagcgca
ctgcaggcaaagggaacagatggagcccaggccctcagactggagctcgcctggcatccttgaggaacagaagggaggctagtgtggctggagtaaatgg
ggaggagaggaaatcagagaggtaacggagccagataacacagggccttgattaccactgcaaggatacggctgtcactaaatcacgaggggtccctttt
tccaatgagggtccctttttccaggatcgggaaggtggatgggatatgccttatgctttacaggatcactttcacactgcgttAAGAATAGAATACGGAG
AGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAGAATACGGAGgggaaggagtaaaagctggagaccaattaggaggctattgtaa
taatccaggccgagaagatggcagagcagggctcctcaacctccaggccatggactggtaccagtccatggtctgttaggaactggaccacacagcagga
ggtgagcagcaggctgcaagcaagcaaagcttcatctgtatttacagccactccccatcggttgtattacatcctgacctctgcctcctgtcagatcagc
aggggcattagattctcacaggagcacgaatcctgttgtgaactgtacacgtgagtgatctaggctgcacactcgttataagaatctaatgtctgatgat
ctgtcactgtctcccatcatccccagatgggaccgtctgg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
979 chr14 51664431 51664730 RIP_Alu_chr14_051_01 0 + Ya5ac2376 GCTCTTCATGGGTTCCTTCA ACAGAGCCTTCCCTCTGTGA SINE Alu Ya5 aacagccttaggaactacccttggtaaggaatcagaagatcatgggtctacttcagacggactctaccaaatttctctcagcatggccttggacaagttg
cttatttctattcatcttcctcatcagcaaaacagactcttcatgaaagggctcttcatgggttccttcaaggacataggtgtgttaaagcaaaataaat
atagcctgagaaggactccattcttctatatttgagtccttggggatgaactgtaacctagcttaataaacaagattgaaaacctaacttaggagtatgc
atctgtaacaatagctgagtcttggccaatcccagcagccatacttcaactactcacacactgatgagtgttcagactgtgttcAAAAAAGGCAAATGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGGCAAATGCCaacctgcaatcaatccagctgttctgtgcgtcacttccggtttctgtaggtcatttccctttttttgtctataaatcttcttcca
ccacgtggttgtgctggagtctctgtgaatctgctgtgactctgggtgctgccccattcgcaaattgttcattgctcaattaaacttctttaaatttaat
tcagatgaactttttcttttatcaggtgtcacctaacatacaagtttttggactaattctgcaaacatatggtatgaattaaagcagtggttctcaaagt
gtagttcccagaccggtagcatctgttgggaacgtgatagaaatgcacattcccaggccccatccttaacgaactgaatcagaaactctggggcttttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 1173 858 NA intergenic
980 chr14 51826548 51826863 RIP_Alu_chr14_051_02 0 + pAlu14-50746736|79667|Ya5ac2380 GTGATCACGCTGCTTTATGC GTGATACAACTCACTATCTGGC SINE Alu Ya5 tttttataaaataagcagaatatgtttatgctggactgtgtttcagcataggctgtgatacagacctacaattctttggtgatgctaaaggcaactcaag
aaagacaaggaatgatccttcaaagcagctcaaacaggttcaacaagaggcttgagtggaagatacctgccatatgtaaaacggtactgtgggcagagaa
aatgaacagtgtttcaaacccaagccccaggctggaaatcataaggacagaatctctgactgttaaatgtagatttgtgatcacgctgctttatgcatgc
aagactctgtatactgccattcaggatgagtaccatcaggattctatttctttgataaagatgaacgattctccaaaacaacacAAGAGAAGCCAGATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAGAAGCCAGATAGtgagttgtatcactgtagtaggcagcttctaaaagagctaccaatgatcccggtcttcaggtctccagg
tattcatgcccttgggtaattctttccctgcaagcatgatctggacctacagacttgcttctaaggtgtggaatacagcagaaaaacatctggaaagtta
cacctttccaaataagccttggttgcttgctcgctccgatggaaaccagctgctgtgctgtgagctgtattgtggagaggctcatatggcagaaaatgga
gggaggccactggccaacagccagcaaggaatagaagctcttagtcccacaacccaggaggaaccaaatcctccaacaaccacatgaatgttcttggaag
tggatccttccttcc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 60 468 141 NA intergenic
994 chr14 53633816 53634135 RIP_Alu_chr14_053_01 0 + pAlu14-52554004 NA NA SINE Alu Yc2 aatccaaaaatgaaattaaaaaacaattccatttgatagcatcaaaaagaataaaatatttaggaataaatttaacaaaagaagtgtaaaacttatactc
taaaatctacaagtcattgttaaaataaagaagatgtaaataaataaaaacacgctatctttatggataagaagacttagtatttttaagatgccaatac
tctccaaattaatctgtacattcaacacaatcctcatcagaattccaagtggtttctttgtggaaattgaccagctgatactaaaattcacgtggaattg
caagggatccagaatagccaaaacaatcttgaaaaagatgagcaaagttgaaggactcacaattatcaatttcaaaacttacttcAAAACAACAGTAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAACAAACAAACAAAAAAAAAAACAACAGTAATCaggacagtgtggtattggcataaggacagacatagatcaatggaatagattgagagtcctaagaca
aatccatgtgtctatggtcaactaatttttgacaagggcaccaagaccatttcatggagaaagaatagtctttcagcaaatgatgctgggtatcttagta
cattttgggctgctataacacaatgccacagatagagtattttataaagaacagaaattcatttctcacagttctggaggctgagaagttcaagatcaag
ttgccagcaggtttggttgtctgacaagggtccagtctctgcttctaagatgaagccttgaacaatgtgtcctccaacaaggaagaatgctgtgttctca
catagcacaaagtggaagg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1008 chr14 55507678 55507679 RIP_Alu_chr14_055_01 0 - pAlu14-54427953 NA NA SINE Alu Ya5a2 aaaagcattagatttggatacagacagatttgttcagatccccaactctgcccttaactaaccgttttacctcagaaaagtaactaaagccctctgagcc
ccagtttttaaaatcaatgcattcatttaaaaaatacttattggtgaacaaagagacttagttcttgtagctctgcagctcaccctctgggttggagtgg
agggatgagggagttgctcaatctgggtgctggtccagtgagtggtgggcagtcagagggaggtacagaggagagaactgaaagactttgagtaactgga
ggctggaggtgcaatggagaatggtcccaaatgaggctggagaaggaagcagaggttggattatgaaggctttttaagctttgttcAAGAATTTGGACTT
CAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG
AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAATTTGGACTTtatttgaagggaaa
tgaagagcaatcacagggtcttaatcagaagaatgtgacccagtttgcatcctacaaggatctctctggctgctgtgtggggaatggattggatgagaat
gggtgggagggtaagaccaggagcagcaatgccagctagcagaaggtggttgcaatagtgcatgaaagatcatgtggcctggaccagggacaaggcagcc
aggcaccaggaaagtgggtggactccagggatgtttagaggttgggatcaacagggctggatgatgctgatgggcggagtggggagaggcaagaatcatg
agcaggactcaagtttgggcaacagaatggacagtgatgctattaactgagacagacacacaggacacaagg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1013 chr14 56100980 56101319 RIP_Alu_chr14_056_01 0 + pAlu14-55021168|Yb8NBC467 TATTTTCCCTCCTCGGTGCT GATTCCACGGGGAAACGA SINE Alu Yb8 tcttgtcaatagattccacggggaaacgaaaatggagtgaagaaaaagtgctaaggggccggagctggtggctcacgcctgtaatcccagcattttagga
ggctgaggagggtggatcacctgaggtcaggagttcgagacccccctggccaacatggtgaaaccctgcccctactaaaaatacaaaatttagccaggca
tggtagtgggcacctgtaatctcagctactcgggaggctaaggcaggagaatcacttgaacccaggaggcagaggttgcagtaagccaagatggtaccac
tgccctccagtctgggtgacagaagaagactgtctcaaaaaaaaaaaaaaaaaaaaaaaggaaagaaaaaaaaaagaaaagaaaagAAAAGAAAAGAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGG
AGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGAAaagcaccgaggagggaaaataatgaatctaaaattctatacccagct
aaatcattcaaaatcaaaaatcaagataaagaagaaacaagttcagatatacagagattcagaaactactaaaagatatctttcagaaaaaaaggaaaat
gagctcataaggaagtggcagatataaaaaaaagttagtaaatcagaaaattgcctggaaaagcaagcatctgtatttaaatatgaatattatactgtgt
ttaattttgttttccttcatttccattagcactaccctggatgggaccaaagtcagctctcacctagattactgggatggttatttctaatcactttccc
cacctctattgttacccacctcttcttctccactctata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Genome comparison|Candidate screening NA 55 765 411 NA intergenic
1015 chr14 56442892 56443175 RIP_Alu_chr14_056_02 0 + pAlu14-55363036 NA NA SINE Alu Y ccccacgggagaaaagttaatggatgatgaggaaggagagatgttggactactttgagaagcttgattatgaaggagagggacagagcagtggcttaagg
actgcaggatgtgaggacagttttgtttaggtctgagtttggaaataattgaagatagggctatattcagatgacccagaatggaagatggaggttctga
ctgctgactgctggcgtttgtgtgtgtgtgtgttctaaagtagaagatgaagtctgggggcttcaaggataaatgattcagaattgttgttgagagactc
agaagaggtatgtgactgagatggagaaaaaggattataattGAAAGGCTATGTGAGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGA
GGCCGAGGTGGGCAAATCATGAGGTCAGGAGATCAAGAACATCCTGGCTAACACAGTGAAATCCCATCTCTACTAAAGATACAAAAAAAAAAAAAATAGC
CGGTTGTGATGGTGGGCACCTGTAGTCCCAGCTACTTGGAATGCTGAGGCCAGAGAATGATGTGAACCCAGGAGGCGGAGCTTGCAGTGAACCGAGATTG
CGCCACTGTACTCCAGCTGGGGCGACAGAGCGAGACTCTGTCTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAAAAGAAAGGCTATGTGcttg
gaccatgcagacaaaagccacccttgataaaagcaatgggcttttcctttaggggaattcttcattcacgtatgtatttatcattcaacaaatatttatg
aatgcttgccatgtgccaggcaccattataggtctccaccagcagtggtccccaaccttttcgacatcaggggccagtttcacagaagataatttttcca
tggactagatggggggatggtttggggatgattccagcacattacatttattatgtactttatttctgttactattacgttgtaatatataattaaataa
ttatacaactcaccataatgtagaatcagggggagccc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1032 chr14 58615066 58615358 RIP_Alu_chr14_058_01 0 + Ya5NBC333|5330|Ya5ac2388 TCGGTTTGTTCAAGATGCAA CCCAGACTGGTGGAGAAGAG SINE Alu Ya5 tttgagttttctaaaagaactctaaacttagaactctaaatttgtagatttaatataaaccatttgggcttttaaatggcatttgaaggcctccatgctt
taaaaactgtttggaaaagataccttccaagcaatcaattaaaatacttgagaatataaagcttccatttataaaaggagtgaaaacaaatattttttcc
aaacttctgtttgagagaatacgtataaatgttttttatgaaaaactttttaaaatgtaacatttttcagtttaaaaataagttcctaattgattcatct
aagacattattataaattaaactcttaaatttaaaaaaaaaattttataccaacaaatcaaaggcaaatataaattaaactttttAAATAATACTTTTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAATA
CTTTTAGttttagatacttttgtttctcagtgtaaatttataccaaaaaaatttaattcccatgtatttgggaatgatagcatgccaaagtgcattaaga
tatcttacctatcttacttatctaatttggaatataggtcaaggtgcatgtaacagggctccaaaataacagtgttttgaattcgccagaaattatttct
ctcttctccaccagtctgggagtaaatagtgtgatactagcttaggacatctaccccatgaggtcattcagggacccaggctccttctcttattgttgca
ccatctctagtatgctccactgattctcatggtccatagtagctcaccacctcatccacatcatccacagttaaaacaaggtcgaaaaaatg UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening|Trace comparison NA 60 588 281 NA intergenic
1034 chr14 58964123 58964124 RIP_Alu_chr14_058_02 0 + Ya5ac2408 TGCGCTTTAACACCAGTCAG AATTATTTGGGGATGGGCTC SINE Alu Ya5 tattgctgtacgtgtgacctcgggaaagttatttagccatgccaccctcaatccctgcatatgtaaaccagggcttataataataccttctgataggtgg
ttatgaagattaaatgagagatatgcaaaagcccaattccagtttttgatcattcttttcaaagtgtctcacataattctctggctactggtacatgtag
attattaaaaccagggcacaaattgatagtgcactgctttatcacaacactgctgttctgctaaaaccctcagccacatttatctcagaagggccaggac
cagatggacactatcattgacttgagtctataattatttggggatgggctcaagtcttgcatttttgttttttaagatactagGGTCTTCCACTCTCTTT
NNNNNNNNNNGGTCTTCCACTCTCTTTaggaaaaagagcgaatgctttgccagccctattatcctctgactggtgttaaagcgcatttagtgggaatgtc
attaactttttcatgggaaagatgaaattggccagcaccctgtttctcccttccagttttgctgtgctcctggctgtgcctagagagggaaatccaatga
agcgtgaggtcaggcagcccaagctcttccccagggtgcactcagccagcaggcctcggtcctaccttgaggcaaacactccttctaaatgtttatttat
gcttttgaacccaaggtccaatgggaacatgaaacatatgattccaaaagagattaccccccacggatttcttctaccacacacagagaaaaggaaaacc
atgtataagc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 352 127 NA intergenic
1039 chr14 59523924 59523925 RIP_Alu_chr14_059_03 0 - Yb7AD136|pAlu14-58444197 CTTTTGGCAACCAGTTACAT GGAAATGGAAGGGAAATCTA SINE Alu Yb7 gtctctttgtaaaagtattccaaataataaatgaaataatgatagaataagaatatcaccattttgtaatccccaactgcattaagtaataatggctttt
ggcatcacacaagtgagacaataagatatcacgtgtctcctacagtcttgtcaaacattagttttgccagaaaaatggaacctgggtctgatcctatctg
tggatccacttgccaatttgcaggaaatatagaagatgggaggcatatagcgatgtatcttaagtaagcaaatcccaggctgctggaaactctttgggtc
gaatggctcaagtatttctagagataaactatgggaaatggaagggaaatctatcaattaaaagagatttaaaagacagagtacAAAGAAGTTAAGGTTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAGTTAAGGTTGatctctgggtggtgagaatgttttgttgttggcctacattttctgtttttatacaatgcatataaacttc
ctctgtaatgataacaagttgttacaaataatgtaactggttgccaaaagcaacaaaagaaacgcagttacattttttaaaaatggcaaaaccaaactat
tgtgctagggatgtacatttgggtgacagaactatcaggaaaaaatccaggaagacgattactgcagaggttaggataatgatttcttgtggagagagga
aggcatggggcacatagaagaggcttttgccctaggtggcaaaattttctttcttgatctgggtgctgattacaagcattttcaccttacaacaatgtac
taagccatatatat Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 0 0 NA intron
1040 chr14 59645252 59645253 RIP_Alu_chr14_059_01 0 - pAlu14-58565528 NA NA SINE Alu Ya5 catttttgctgtgtcctcagatggcacagagagggacaaatcaagctctctggtacctcttctcataaggggactagtcccatcataccaaggacccacc
ttcatgacctaattacctcccaaaggcctcatctcaaaataccatcacattggggtttaagactgtaatatatgaattctggagagacacaaatattcag
tccataacatgctgaacatttctacctggacactaacctaagaaaagaaagctgcaatctacggagacggagaaagaaaagtcaaacttgaaaaggcaag
taaaaggggttatcaaacaattttgtgaacaattatgtctgttaaaaaaactattttctacttttcttctgtaataagttggtttttAAAAAATCAATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATCAATATtacttctactattgttgctatcataaaattagaaataaattttgtatttgtcttaaattcattcaatctgtatataatatttata
tgtataaattttaatttcttctttccccccacaggaaagttccatctccttacacaggttttagccaggctatcttaaaaactcaaagctccttatttaa
agtgaaacacaaaattgaaaagttccttatctcaaaaagggttttttaaaaaaactctttagtaagttttaactattgctttagtatgttttacagagat
taatcctaaaagaataattatcaaaataacctgtcacccaatggtttgatgatttttaatccatggattcatttttttgtaacactaaaaggaaagctct
ct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1041 chr14 59811153 59811154 RIP_Alu_chr14_059_02 0 + pAlu14-58731441 NA NA SINE Alu Yi6 cccttagattaagtgacttggaggaacttgatttagtaaaatggccagacagccttttggagcatcaacattttttttaagaagtttaactgtaaagaga
agagaggcacatgggtagctcgaggggaataagtcacatgaaaagttatttttaatgggtaacatgggtgacacttgtggctttaaaagtcacactccaa
ctgagaaatgttgataaaaaggagaaaaaggaaaatagtgtaacattcctgaaaaaactgtcatttaagactcctttgaaacatgggcaccaaagctagt
ctagtagaggatttattatcagtgagaggacagagtcctattacagcagaaaagtaggaggagagggttatgaaagAATTCATTGAAATGGTTCACTCAT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GGAAAAAATTCATTGAAATGGTTCACTCATttattgatcttttttttctgtagtatccaatctgccattcattgtctctattgcaattttcagttcagta
aattgcttctcatttccatgaaactattttcagagtacctcttttttaattgacagtctgcaattgttttattcattcaatgtcatttcatatcttggtt
agtttctaattttgagctaatgaatactgagtctccctctttttaacttctgaattaaaaaaaaagtcatcttatttttctctgttcatttttacacttt
atttagcctaagtatctgaaattggctttgctagaaattacaattagttcactgttgttttctttcagtcccagacaaaaaagaaaaattttagatttct
ttcttt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1065 chr14 62957241 62957555 RIP_Alu_chr14_062_01 0 + Ya5NBC208|Ya5ac2368 AATACCTTGTACATCTTCACCCCTA TCTCTCTGCTGCACAGTTTGTT SINE Alu Ya5 caatctgggatatacctatgaaaagcacaaatagttttacaagtttcttagattgcagacaatatgtctgggaccttaaaaaaaaaatcaaacatctaag
atagtaaatcaattaccgtgttttaactaatttacccagtcttagcattggaggcaggaatacatatgcataacacgcctgagtaagagctgagaaaaca
gagcccccaaaagctctctacgtaacaacgggaaatagcacacgtgtgtacttgcagaaactttgagttgtcaaagcaggacagacagacttgcaaattt
gtgtcagaaattctgaagtaggggggaaaaactcttagaatatctctaggccttctctctctgctgcacagtttgtttgctcttcAAAAAGTCAACCTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGTCAACCTGAaccatgaatacatttctacgaaaatgcagcagcttctgcctaggggtgaagatgtacaaggtattattcat
tttcttccaccccttcccccttgctatttgtcgagcaacctaaggatattctgactcaatggaagggtgactttggggttcaacatgtacaaatttcctt
gctctattcttttgagaaattttggccttcagagaaggcagcacaaggaaggaacgagctggaaaattaccagtatgtattatacaagttaatacaatac
agatggctctaatgctggaaacagagatgcagtgatgcccctgatccatcctggcacataagtgtgattggaaaacatggccttctcagtgcaagagaac
agaattggccttta UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening|Selective database search followed by genotyping NA 50 441 115 NA intron
1077 chr14 64596911 64597181 RIP_Alu_chr14_064_01 0 + Ya5ac2366 TTTGGTATGGGTACAATTTTTGC ACCCAGGTCCTCTAGTCGGT SINE Alu Ya5 caggctggtcttgaactcctgacctcgggtgatccatccacctcggcctcccaaaatgctgggattacaggcatgagccaccgcgtccggcccccttttt
cttgattataaatgtaaatacatgtttattgttttaataattgggatacataaaatataaaaaagaaaatgaaaaacaatcatatcactattaatatttt
ggtatgggtacaatttttgctatttatatacatcacaggtacaaatacactttttaaaaagtttgagaccaggtgtggtggctcacacctgtaaccccag
cactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagccggaccaacatggtgaaaccctgtctctactAAAAATACAAAAAT
AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATAC
AAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTG
AGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAATACAAAAATtacccaggcgtggtgg
ctcacacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacacaggaggcagaggttgcagtgagctaagatcgtgtcaatgcact
ccagcctgggcaacagagcaagactctctcaaaaaaaaaaaaaaaaaaaaaaaaacagtttgagatagtattgtacatactgttttctcacataatatgt
tgtaagtatttgcctgtatcgttaaatatttaaatgcgtgtttataatggctgtatattaacctgtgtcccatgtactagatagttttagcaaatacacc
atttttgaacctttgggctttgtgtgtatctctgattccttatactaaattcttagaagtgcctttcatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 1068 802 NA intron
1087 chr14 65880397 65880694 RIP_Alu_chr14_065_01 0 - 9480|Ya5ac2390 CTCAAATGTTTGCAAAACCC TTCCCCTGATTGAATTTTGG SINE Alu Ya5 cgggtcttcggggtttaataacagcagtaacatactataccttttttccaaaatgatgcccaaatgatgtataaactttttgtgatgtaattaccaccca
tcaatcacttcatttctgaaatatggtggcttctgatgagatgagattgctttccacattctcattagtttacgaaggaaagagaaaaaaatcttgcctc
tgttagaaaagcaggtaaggatagaaaggtaatttggttacatattacacaaaaactgggtaagaaaggaaaaataatgtcattatacataggctcaaat
gtttgcaaaacccttttacatatatagttaagtttaatcctacagatctatgttttggtagcagtggatttatgcaaatcattttAAAAAATGTCCCCAA
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATGTCCCCAAacgtaaatctagtggtttatatcaacatcccaaaattcaatcaggggaagtttctatagcctttctatatttaataaggcatttggca
tgtttttcatagattaaaaatgctaataatcaatataccaaaaatagatattcttataatgtttgatgagtcataattattgataggtaaacgtgttgaa
attgattattgcaacattaccctatctgttgctaacttatcctaaccctagatagatagacagacagatagggttattgctctctctctctctctctcta
tatatatgtatgatatatatataagatgtatatatgatatatataagatatatatatatatctaaggctgagaaggagccatgaggaacagtaagtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 468 172 NA intergenic
1099 chr14 67446765 67446909 RIP_Alu_chr14_067_01 0 + 7444 NA NA SINE Alu Y? tcctcccatcttggccttccaaagtgttgggattacaggcatgagccaccacatgtggccaaaaaatactttttataaatacctcagttgcataatgttt
tctccattatcaacttgacaggcctttgtttaaggtttacggttataagtacttatttgtgtaaaatttaagatctatcaatatgtctaatttttcagaa
atttttttcttcaacattttagcctttggcccattttcaaattgtatgtaggccaaggcatacacagtggacattgtgcagctgcgtatacgaatatagc
caacattaagaggtcccttgcaataatgctgtttcagaaaggatgtttactgttcttttgaacatagttttcttgtttctgctttaacttatAAATATTT
CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG
ACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTTaaataaaaataatgtttcactgaagaaattgtaaaagtgaactatatg
ttaaaaataatctaggaaactaaattactgctattccactttgcagtttgatattgctcattttttgactcgtaaagtcagtgtcgatgccttttaactt
tttttttaaaattttactggatttgtattttaccatatttgtgcagtgactttgattaggtaccaattgaattcagattaaaaagcataaacctacatct
gaagatagcctagtataatttatattgtgcatcgttctgattttgaaataataattctcctttacaacgttagggctgaataaaagatagaatccttatg
aaatagtgagcccaatgtcattttttttttttttgagtcagagt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1122 chr14 70507589 70507913 RIP_Alu_chr14_070_01 0 - pAlu14-69427783|Yb8NBC9|239173 GTCCCCACCAATCCCTATCT TGCTCAAAGTCCCACAGCTA SINE Alu Yb8 tcaaacctgacaggcatgctcttgctttagggctttgcccttgctgttccctctgcgtggagggggcccctcccctcagatatcctgagagctcactcct
ccttcttcaggtctttgctctcagagaagcccgccctcaactactctatttaaaattaaaatttccctagtccccaccaatccctatcttctgtctctac
ttactacagtatatgttgatcgctaccagtatgattccatattaatagtagagaagccacatgagggtggaactttttgtctttttgttcactgatttat
ttccagtacttaaaacagtgccaagagtactcgacaatatttgttaaatgttaaacatatggaaaaatgttgcatgataaaagcaagttttAAAACTATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGTCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAACTATAtaaagtagtatagcatagattttaaaaagcataattcaaaactagatttgaattataggactgtcac
tttgtagctgtgggactttgagcaagtttcttataatttctctctaagcaataacatgcttatctgtaaagtgagaataataacagtgccaacttcaaac
gtttatagtgaagattaactgggtaaatgcatataaaatgcttagaagaggacttaaaccaggggttgacaaactaagtcccatgaagccaaatccagcc
ctcaaacttgtttttataaaccaaattttaggatggcacagccatgcccactatttatgtatcgtttatgactcctttcactctacaatggcagagttga
gtagctgagtagcaagagagacca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 55 655 322 NA intron
1126 chr14 70955949 70956266 RIP_Alu_chr14_070_02 0 - Yb8AC870 TAAATCCAGGGAAGAAACGATG GTCTTTGTGTAGGGACTTTCAGG SINE Alu Yb8 ttcatatttctatcctggctaatactaagcaaaatgttctctacataatagatataaaataattatttgcttaattaacttttccactaataaatccagg
gaagaaacgatgtcaacaaacacagaatatctaccttataactacaaaagctttaaggtttttgttttgtttttttgagacagggtcttgctttgtcacc
caggctggagtgcagtggtgtgatcatggcccattgcaccctcaacttcccaagctcaagcaatcctcccacctcagccttccaagtagctgggactaca
ggtgcatgccaccatgtccagctaatttttttttaagagatggggtctcactatgttgcccaggttagttttgaactctttgcctcaAGAGATCCTCCTT
GGCCGGGCGCGGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAGAGATCCTCCTTgagcctttcaaattacaggattacaggtgtgggccatcacccctggcccaaaagctttcatttcaggcca
gaacagccctgaaagtccctacacaaagacagatatttatcaaatgttacctagtcaatttctcaaaacatttacttttcagttgactggaaaaaaacac
tggtcggtagcagacaagggtcagttactgaattaagctatagacttaaaaaaaaaaaaaaccctgaaagaaaacaaagtccgttagctctacagcaacc
attcactatttaacctactgaacgctcatccagagtgccaatcagaccgttttaattaaggaaactattacaggcagaactcaaggctagtcatgtgctg
agacagcaacggttcag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 740 410 NA intergenic
1147 chr14 73736590 73736897 RIP_Alu_chr14_073_01 0 + pAlu14-72656778 NA NA SINE Alu Sc taatctgttacagcttcaagcaagaaagtcagtatagcctgaaagacaagagaaacgggatggtttataggagttcccatttggttgaaagctagaagcc
ctaattgaccttaaagtaacatgctatgggatggtgggattgtcccctctgacagcacatatgaaatagttcatctatataatagaaacgcacacacacg
aaaaagaatcttctgacttaaatacaactttcatggagttcttcaccacttatctgtctctgttaaaatctgaaaatctagcccatggctaaaatctatt
atatgtgttctccatatttcttgtataagccagtccccagcatctgatgttttgagaagtgcatggagtttcctaaactttgcacaaAAGAATATCCTGG
GGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATAGGTCAAAAGATCGAGACCATCCTGGCCAATATGGT
GAAACCCTGTCTCTACTAAAATACAAAAATTAGCTGGGCATGATGGTGCATGCCTATAGTCCCAGCTACTTGGGGGCCTGAGGCACGAGAATCGCTTGAA
TTCGGGAGGTGGAGGTTGCAGTGAGCCGAAATTATGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATATCCtggcaatagtctgatggtgtttggacacaagaaaagttatggttttgagtcgtgagtgtttgctagggcatggcactcttcag
tttaacagctgatccattaaaccttttctgacatttgtgccttgttctcatgctagaattaatgctggatttttctctcatttgaccatcaatgtagttt
tacttattgaaaggaaaaaagacttaacacaagataggaaagatgagtatgagaagtaaaacattctgctggggtgctacatagaaggttaggttgtagg
ggctttgattttaatttaaacttattatcgattgatatttctgtatctcactaaatgcggttgaagagtgtgtgtgtgtgtgtgcgcgcgcgcatgtggc
caaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1179 chr14 77897998 77898337 RIP_Alu_chr14_077_01 0 + pAlu14-76818186|Yb8AC840 GGCTCCCTTTATTTGTCAAGCTA CTGAAAGAAGTTATGAGCAAGCAG SINE Alu Yb8 tctctcctgtagttaatttctctagatctcttgtgctatattgattttgtaaatagctattgtcacatctgccccttctgcctgtgggaactagtgggtc
ttaaaaaattgaattgggtgagagtgtagattaatcaataccaagatttattgactcgggacatttatattaactgttgtgaagtcaagaataatttgaa
ccttttcaatacttcattaagtggcatagtgtattatctatggtgtattttgaaagtatccttcctggatttggtacagctctcacctcgacttcctaaa
acggctccctttatttgtcaagctattaggatttatattataataggaatcacatcaaggtacttttcaaaggctaagtaaaaatcatAAGAAGAAACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAACTAtagtttctgcttgctcataacttctttcagattcctccttttgaaacac
atttttttttttcaactggggttaggttttcagtgagatcaaattcaggcatgggaactagagatacgcatatcttaaaattttgttctttgtggaatat
ttgcctattgcactttaaaaagtcaacaactactttgtttaattaaataattaatgcctctcctttttacaagaaggagttacatcatctttttccaaag
ggcataaattagaacacttcagacacaacctgttcttaacagggatgtttttcatatctattaagaaggaaataattttgagttgtatagtcatggtgag
aaagatatatcaataattattaacttatcctatctcttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Genome comparison|Candidate screening NA 60 479 128 NA intergenic
1183 chr14 78416053 78416357 RIP_Alu_chr14_078_01 0 + Ya5ac2404 GTCAAGGTTCTGGCAGGAAA TATTCACTCCCTTTCCCCCT SINE Alu Ya5 ttttaattgggttatttgtttacttgctatgaagttgtttgaattctttatatattttagatattaaccccttatcatagaatgacgcattttaagacaa
ggaatgaatcttgtgaaagcttaattccctgtcctaattcctcaccctttacacctccttgcactagacacactcatttacaaactctatacttctactg
tattcctatgactggagggtgtttatgagaaaagcaggtgagccttagagtaccagtatatcaatttttttccacagtaggttaagggattcatggaggg
accccccctgccccccaaattgatttgccttttgcattagtcaaggttctggcaggaaaactggtgacactctcaaatgggggtaataatatAAGAATTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAGAATTGacccatttacaatagtataggcagggtaagtctgttgtcagggaagccaataaaggatggagaagcacctttttacccattacctctc
ttaggcttgaagggggaaagggagtgaatatttattggaacaaagagccagagatgtggctgtaactgggagagggcctcccaataggatctgaaaagtt
cagtagtgaaatgcaagcactgcaacccgaggcctggcagggaggagaccaaagaaactgatatcccaatctcacttttcccactccctggctttctgcc
aatgactcccatttgatgcagtccagaaagatgggcttcctagagagcagagtagggtggaaaatggattcagagggccatgaagagtatcagagtatca
agaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 491 179 NA intron
1185 chr14 78723690 78723778 RIP_Alu_chr14_078_02 0 + 2570 NA NA SINE Alu Y tgtaccatgagcggagtcagagcccctcttgaaagcaggttggtaaatttccagaaccacttagcagttttcataggtggcaaggcattgtattgttatt
tttattattgttaggagctaacatttgtttccaggaactgggctaaatggttcaaattcattatctcatttaatctttacaatatttctgtgaggtagaa
agtattgttatctccattttagagatagcagttatagaagaggcatctggagctaaaacagattaaatgaccttttccctcaggttcagagtaagtgtca
tattgcaccccagaataattctgtgctcaccataatgatttacccttctaaaaggtaatataatgcaatttcagaaattaatgaAAAAATGTGTAAGCAT
AGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGTAA
GCATaagaaaaaatagcgaatgtccttttctagcatcacactagattttacgggtgattacaggaagacccttttgagattttcagcaatggacttttct
tggatgagacggaagatgctctcagctggtgtgactaaattgtttgcgacttgaggacatgggtcatgccctctgtgtgtaccactcactatatcctcat
cacagttcctgcataaagcagagattcagaagggtcagtcgagaacatggatgacaacccaacactgtaacccagcagcttgtgtcttggtgtaacattg
gtaggttttgtttgcctttacatttttaccataagaggtcaactagagtttctatcttgttacaagttcattacacaggtatccctta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1196 chr14 80162279 80162590 RIP_Alu_chr14_080_01 0 + A3 CCCCAAAGATAGTCAGGTTCTAA CCTCCTCCATTCTCACTCAATC SINE Alu Yb8 tccttctttcctctttttcttttttcttccttatttcttttttctcccttctttcttttttctctttctttcctttctttctctctttcttctttctttt
tgttactcttgtacagaagaaatttttaccatatcagattagttctctcattcatgccaatatcaagtgagcctgtattactctttaaaaagtcataaaa
tactaaatggtaacactggtatattgaataatcagccccaaagatagtcaggttctaattcctggaatatgtgaatacataactttacaaggcaaaagag
actttgcagattttaaggatcttgagatgaaaaaattagcatgggttattcaggagatccctaaatgtaatcacaattgtccttattAAGAGTGAGACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAGTGAGACAGgggagacttgaccacatagaggaaaatgcaatgtagtgacagaagcagagattggagtgagaatggaggaaggggc
cacaacccaaggaacatagacaaccactagaagctgaaaagggcaggagaaagaattctcccctcagagctttcagaagcaaccaatcctgccaacacct
taactttaggccagtgaagccaatttcagattcctgacttcaagaaaataaacctagaccaagatggtgaaactccgtctctactaaaagtacaaaaatt
agctagatgtggtggcgggcacctataatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaaga
tggtgcaccat UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.PMID: 7714898.
Library screening NA 0 0 0 NA intron
1200 chr14 80666806 80667112 RIP_Alu_chr14_080_02 0 + Yb8NBC148 CCAGGCCTCCATCTTTGATA TCACTTTTGGGCATGTCAAG SINE Alu Yb8 aaaactccgtttaccaggtcaacagtgacttccacaattgctaaatcaagtggccaattagtacttatttcagaggcatttgactcagttgctgactcca
tcctccttggaatgtattcttcttttggcttccaaatcactactctctcttggtttttctccatacctctgattgttccttcctactctgtttttctagc
tcttcttcttcttcttcctgatctcttaatgttggagtgccccaggcctccatctttgatattctttttatctatatcttcattcacttccttggtgatc
ttatccacttgtatggatttacctaatgcctatgatacccaaatagaaatctccagtccagacaattctcccaaattccacgcttatAAAACACTGCTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAA
AAAAAAAAAACACTGCTTGactgccgtcaccatctggatgtctaataggcatctcaaacttgacatgcccaaaagtgaatttctgatcattccctccaaa
cctgcctcacctgcagccttccccatctcaggaaatggcaacttcattctcccagctgcagactagaaatcttggagtcattctcaacccttctctttct
cacataccccatatcccatccatcagaaagtcccaatggctctacttttcaaatatctacaaactccaaccattttcagtatctccactgctaccaccct
agtccaaagcaccatcctttctatttttgatctccctgtttccacgccttactcactttggtaactttcaaagcagcagccagcatgatcctttttaaat
aagtca UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 537 218 NA intron
1211 chr14 82089369 82089635 RIP_Alu_chr14_082_01 0 - 13644|Ya5JW580 GCAACTCAGAGACTTTACTGTGC TCCACTTTCACTCTCTGGACATT SINE Alu Ya5 aaatagatactttaaaaatatttcacagtactgtcccaaactgaacatatgcatactccatgacccaatacttttaattctaggtaaatactcaacaaaa
acatggatgtatgttcaccaaaagtcatttgtaaaaatgccgataccagcaagccttgaaaaaatgcaaacatctgtcaagagtagaatgaataataaat
tgtgatgtattcattaaaccaaatctgttcagcagttaaaacaaataaactgcagctctacctattgtataaaaatagggatgaatctcacgagcatact
atgtccactttcactctctggacatttataataaagtgaaaaaaacacagaagaaatgcaaaatatcctacagtttcacaaagttAAGAAGTTGATTACT
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA
TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAGTTGATTACTttgggacactaatatatta
atttgcacagtaaagtctctgagttgctgtgtagtagttttctaggcctgccatgacaaagcaccacagactgggtggcttgcacaactgaaatctactt
tctcagaatatggaagatagaagtctgagattaagatgtcaacacgattgtttcttctgaggcctctctccttggtttgcatgtgattgtcttcgccctg
tcttcacatgatcttcctcctgtatgtatctgtgtcctaatttcttagaaggacagaagacatgttgtagtagggcccacctcaatagcctcctttttaa
cttcattacctttttagagatcctacagtacagttgctttctgaagtacctgggtttaagtcttca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 424 144 NA intergenic
1236 chr14 85412603 85412909 RIP_Alu_chr14_085_01 0 + Yc1RG279 CTTTGGACCATAATTTGAGCAAC GGGACTGGGATAAGAGAGTGAAT SINE Alu Yc1 attcatcaacatcatgaataaccatagtaaatagacatttagagccatgaatggacttgctcaagagagcaattaaatcagtggcccctgggcttgatgt
tttatttcctttgaaaaatattgttgaatccttattatgtgtgtttactgtaaggaatacaaagataagaaagacaatttcaacctcaaaacaatgcatg
attctgtgagagtgaaaagagagggaacatcttgtgcatgaataataaagagaataagccaaaaagcaggaggggactgggataagagagtgaatgctga
gcctatgagtacacttgttccaatttcatattcaaacctaaagttgtgctcctcctcctaaatcatctcccagtgattttcttgcAAGAGTACTAGTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACAAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTACTAGTTCCcctggaggtagacagaaggactgacgctgtggctcatattaaatcctgtcccagctcctgggtaaaaagagcaatttat
ctgagtttagggtagtgttgctcaaattatggtccaaagtcttctgcctcacagatactcagagtgccttttaaatgcagatcagtttcaaaatgtatct
cagttgaaactgatcaaatgtatctcagttaagatacagatcaaatgcatctatttctaatctgaatctcttgggagtaaaagccagagcttatatttga
aaccatgtcctcaggtgattgttttacccaccaaaatatgcaaatcaatggtgtggggcaagcaagaattacattgccagtgatttaaatgagagtcttg
gttagg UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 53 567 246 NA intergenic
1245 chr14 86625654 86625960 RIP_Alu_chr14_086_01 0 + Ya5ac2410|Ya5_432 CCCCAAACCAATCAAGTAGG GGCTTTTCCACTTCATGACAA SINE Alu Ya5 gttaatgtattatggcaattctaaggtgtaattatcttttaaaaatatatttttggttctgaaagatgcacatacatagtaatacaaagagttattagag
actttttatgttctctgcatcgttctaagtactcttcattagcttgtttagttctcaatacaactctgtgaaatagagactattatttattcatattttt
tggatgacagaatggagagacaggagatttaatatatggccagggtcataaagccagtaagtgatagaaccggcatttgaacccaacccaggtattctgg
ctccagaatccatctttttattctctacatttaatagattagtcatataaatgttgggcttttccacttcatgacaatgagatttAAAAAACTAATGGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACTAATGGTCagccatataactgacatgtcctacttgattggtttggggtgtgaattaaatcacatgtcttttaattaccaactaccat
aactcaacgcccttatcagaccacagaaagacatccttcctttttctctccaagtcaactccattccctaaggatgcatactcatacaaatatcagtctt
gatcagggttcccttttgagctgaaataagggaaggagactcagtgctactaaaatccccaccaggagctggttatttcagaacagaagtcgtagcttat
cctgctaccactgtgaaaaaaactgtgtgtcaaaactgaagaaccgtggccattgacaaggcgtttatcatggtggtaccaagtgagaacctactaggac
caactg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 472 151 NA intergenic
1248 chr14 86927817 86928136 RIP_Alu_chr14_086_02 0 + Ya5ac2409 CTGGATCTTGGTTTCCCCTT GGTTTAGGATTTGCATTGCTG SINE Alu Ya5 aaggatttccgtttaacttcactttcctcagtccatttcatacatcttgaaacttattattcaactattatgttatttcccaatttgtctatttgctaca
tttcaatggccttgtctagatctcatagtccctttcactcattgcttccgttgttatatctacataggatattttgtatagattcataaaaatgttaaaa
tatatgtatactcactcaatacttactcaattagccctaattgccagacacttaatagaatttggtgggatcacttctggctttcataaaaacttgggca
cttttcaactactccctctggatcttggtttcccctttgtaaaagatgaaaaaaatgaaaaggaaaagatatcgcacaatagttatatttatAAAATCGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA
AATAAAAAAAAAAAAAAAAAAAATCGTaaagctgattgtaaaagtgacagaagaaaatatcacagcattgattctacaaagactcctttgattaacagca
atgcaaatcctaaaccagtcttgtaaatgtactgaaaaaaagtcattaaatttcagtaatattcactctctccctggtcttaaacactgttagtagaatt
atagattggttaactcttttagaagctaatttggcagtatatatcaaaattacaactgtgttttgcttatgacctagtaattctactttacaggtaccca
aagatgtatatataaaagtgttctttgtatcatttattgaattagaaaaaggtaatggacaatacatattcactggtaaacaagtgaaaacattttattg
aatatgttggaggtatgaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 499 172 NA intergenic
1273 chr14 90254947 90254948 RIP_Alu_chr14_090_01 0 + pAlu14-89175235|Yb9NBC22 TGCACAACTATACACCAGACACTG TTGTCTCCCATCAGTAGAACCTAAG SINE Alu Yb9 gtgttatttcttgctaaggtcaaggaaattgtttgatgcctggcactcaccattctcctttaacagaatgagatcatatccaggaagacctaggtggtcg
tagtgtatctcccgctttaccacaaagaaacaagaataggagccgtaagttccatgaagccggtctgggctgtcctattcggccttagatccccagcacc
tagcacaacgtgcacaggtgttacatcaactacttttacagacaatatgcaactctcagatagacatctatgagccacagccgtctcagctgaaaatgaa
aagtacatccatttattcattcattcatggatgcacaactatacaccagacactggggcatacaggtacagatctgttcccacgcAAAATTGACCAAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAATTGACCAAAATtcctgcccaagtggaacttaggttctactgatgggagacaactgtaaacaaattaaataagacaaaatacaaat
gggggcaaagggttaaattccttccctcttcttttgagaatttaacctcaggttggccgggcacagtggcttgcgcctgtaatcccagcactttgggagg
tccaggtgggcagatcacttgagcccaggagttcgagaccagcctgggcaatgtggtgaaaccccgtcgctacaaacaaacaaacaaacaaaaaaacaaa
aattagctgggcctggtggcacgcacctgcagtcccagctatttgaggttgacatgggaggattgcttagccctgggaggtcaaggctgcagtgggccgt
gactgcaccac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Genome comparison|Candidate screening NA 55 435 110 NA intron
1302 chr14 94094374 94094375 RIP_Alu_chr14_094_01 0 - pAlu14-93014647|Ya5-MLS68 GTCATAAGCTGAACACCAGGTTTG AGCACAGGCTCCACTTATGCTG SINE Alu Ya5 atttaaggaagcagggataagttgcctgaccaggaaggccagggtggatgtggggaagcagagggcttgactgcctctctgcccctaggaaataccactg
ggccagatggggcagctgctgtgacaccactgatgtccccggcagggagccgctttttccagcatcccagaaactgcctgaactgtgctgtaggcatgaa
tcccactccctgacaccctcctctgctccactgcatcctaaattgcaacccagccctttctcaatggctgtcttggtctcccattccagcacaggctcca
cttatgctgccctcctgctaactgctcccaatccccttcccattccctggattccaaatggagccaggaaattaatctgcccttAAAAAGGCTGTCCTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCTCTCAAAAAAAAAAAAAAAAAAAA
AAAGGCTGTCCTTGttttgaatttgattggcaatgcaataatggtcatcatgaaaaatatgggaaagtaaaaaaaacctggagaagaaaataaaatcatt
tgcaaacctggtgttcagcttatgactagatataattggtttccttccagtcttgtaagaaatgggtatgtgctcatacagaacagcaacaacaaagctc
ttccagtcttggtttggatggaggtaggaagactatagatgctacagtccaaagagagctccatgcaaaaattccagagtaggtggtcaagaacaggtct
cctgattcttaaatgctttactcatgtgaaagaggactgaaaggtgttgagaggtggagactgagaaggaattacaaagaggaaggagagaagtgctt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Genome comparison|Selective PCR with subtractive hybridization NA 58 0 224 NA promoter
1347 chr14 99914766 99915083 RIP_Alu_chr14_099_01 0 + Ya5ac2360|pAlu14-98834954 TAGACGGACACCTCAGGACC CAGCCCTTCCCTCTTTTCTC SINE Alu Ya5 ctcctgcctcagcctcccgagtagctgggattacaggcgtgtgccaccacgcccggctaatttttgtattttagtagagacagggtttcaccatgttggc
caggctggtctcgaactcgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccactatgccctgcccagaaagatt
ttttttaacaagtagaaattcattgcagtgtgaatctgtgtgttgggagtgaaatgggtggatttggatcatgccctcagaattgctccctgcacacttg
ggtagacggacacctcaggaccttagccttgtgctgtgggcctgtctgtccagctggctgctacagagatgggatacctgggggAAGAATGTTCCAGGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATGTTCCAGGCAgagagaaaagagggaagggctggagcacagggaaagggtgcaggggaaagtggcaggcctttcccac
catggatcctggacgtcttttgatttcagtattttcagacctaccctcgttcatgatgatgagcatatgttctcacttgttgctaataagcagtgcggca
ggttttctttatacatttatcttcatggatttatacatctagcaaacatatgctagtatttgtgtaggataaagttctacagtggggttgctggggtgaa
aatgatgtgtttaaacttgtaacacatatgaccaaaatggaccttccaaaggcatttttaaagtcctgtctctttctctgtaggcattgtctcttcaggt
cttctttttttttcttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 453 126 NA intron
1349 chr14 100235666 100235976 RIP_Alu_chr14_100_01 0 + Yb8NBC291 AGAAGCAGAGAGTGGGCTTG TGGCCATACCATTGAGGTTT SINE Alu Yb8 tctggttggccgttagtcagaagtgggacaaaaataggaagctgtcagttaggagtcaagtcctggccatttggggccaattgtcacagaagccacggtt
tagcttcctgcattgtcactagagatggctatcgggcctcctgcaagcctggctcactgcaggctggcttcctccactgtttatgggggatgtggggtca
gtttcctggcaggttgttgcaggtgtgggtcagcgttctgttttcagaacagacccctgtgggaggggcactgagcttcctggtggccagtgggaagagg
gggtcatggcagagtgagatagaagcagagagtgggcttggggtctgtctgggagcaggcaagagcactgttgggtaagaactacttGAAAAGGGACAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTACCAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAAAAGGGACAGCaaacctcaatggtatggccactgtccctttggatatttagtcccttgcaggtgtcctttgacacacagagacgagac
gcaggttgtgtggagacagaggcaggggttggaaggaggctgccacaagccaacgaatacctggaggaccagaagctgcaagaggcctgagaggaccctc
ccctagagcctctggagagagcacggccctgcccacacctgagctgtggacttgtggcctccggaacaatgaaagaataaatttctgttgtttttagcca
ccaagatgtggaaatttgtaatggcagctgacagaagtttgcccaaggtgacaccattggtggatggaaggactaggattggagcccaggcaaggttctg
gtagggagtg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 423 100 NA intergenic
1393 chr14 106025446 106025757 RIP_Alu_chr14_106_01 0 + Yb8NBC100 CGCAGGTGCAATAATATGGA AATTCCCTCCAGGTTGCTGT SINE Alu Yb8 gttacatgagtaatttctttggtgatgatttatgagattttggcgcacccatcaccccaacagtatacactgtacccaatttgtagtcttttatccctca
gcccccctcatctattccaagtccccaaagtctattgtatcattcttatgcctttgcatcctcatagcttatttcccacgtatgagtgagaacatataat
gtttagtttcccacttctgagctacttcacttagaataatggtctccaattccctccaggttgctgtgactgtcattattttgttcctttttatggctta
atattccatggtaaatatatacatatatacacatatacacgtatatatgtacatatataaaaaatatgtatatatagaaaatatAAAATTATATATATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTTCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCCCAAAAAAAAA
AAAAAAAAAAAAAAATTATATATATATataatggtgtgcgtgtgtgtgtgtgtatcacaatttctttatccacccattgactgatgggcatttgggcccg
ttccatattattgcacctgcgaattgtgctcctgtgaacattcatgtgcatgtgcaagtatcttttttgtatggtgacttcctctgggtagatcccagta
atgggactcctggatgaaatatttgttctcctttttttctttaaggaatctccacactgttttccatggtgtttgtactagattacattcccgccagtgt
tcccttttcactgcatcatcaccaacatctatttttttattttttgattatgactattcttgcaggagtaatgtggtattgacttgcatctccattgtgg
ttttgatttgc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 574 247 NA promoter
745 chr15 20978287 20978604 RIP_Alu_chr15_020_01 0 + pAlu15-20845151 NA NA SINE Alu Yc1 tttctgttccacgcatgttgcccacattcactgcgtaaaaggcaaagggaactgtgagtacccacaaagaacctgatattgacggcacatacatttcttc
attaggaagaataaatttagactgtaacaatttaaaaaaccagaaaatacaactgtacattttagttcttattaaaatccaagaggtttaacttatttgc
tccttgtttaggtaattagtgtctaaaacatttcaaagataacatatatagtggctacgatttctagtactttttaaaaattcaagcccagtctcttcta
attaaatgtataaatgatttatctctgtctttcttaaaaagaaccaagagccccaattaaaaagtaaaacttaaatttcctcttaaaaAATTGTTACGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTGTTACGTCaaaattatctaataaaccatagttcagaaaataatttctgaattaagaaaatatgaagaataaaaccaaca
gtttatgtgctgaatttcacatttttattttttattatttttaaaattttgttttaagttctagggtacatgtgcaggagtgttacgtagggaaacgtgt
gccatggtggtttggtccacctatcaactcatcacctcagtgttaagcccagcacgcattagctatttttcctgatgctcctcccccacccgccctgaca
ggccccagtatgtgttgtttcccttcctgtgtccatgtgttctcactgaacctcacatttttaaatacagcatatgccaggtgtcatttcagtacccata
attatacatagtatatg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
755 chr15 22390425 22390733 RIP_Alu_chr15_022_01 0 - pAlu15-22257287 NA NA SINE Alu Yb7 ggccacacagcagttcagttttcttccagacagcccttcccattacaggcccagtggcctaggaagacagaaggacttctggggacaggctggctgggcc
actgtcctgtaccacgtcagggtgctaattccagctgcattggctcaaatgcccaaggtgatctggctctgaaaggtataaggcccagaccttagaggtg
atcatgtggtgataattatataggcttacagaaatgaagaactgtggagtcttggcagcctccacaaatttcaaaggatttcttcaaaagcctggtagtc
tagagacttgtgataagggcagatctactgaagagagccctctatagagggataccaaacacaaatgtggaactggaactgctgcaAAGAGTTCACCAGG
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAGTTCACCAGGGgcaatgccaagcgaagccgcggaagtgaggtccctgcagagagtcctcatatgagtaatgcctagtgaagcagagga
agtggtaccactgccagaaccccagaagtgtcgagtctgcatgcaatgcctgcctgggaaaaacctgaggtagctgactgcaaccagtacagcacccatg
gggactctaccaagcaaagtcatagaataacactgcctgatgttttgtgagtccaaccctcaccccagtgtgttcagaagtcagatacagagaataaaat
atattccaggtttaacatataatgttgaccctgctggattttgaacttgcttgggacctgttacattttaaattttgtctatttctctcttttggaacat
gtacattat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
771 chr15 24423616 24423617 RIP_Alu_chr15_024_01 0 - pAlu15-24290570 NA NA SINE Alu Yc1 cacaacatcctcaccaggagtagattccatctcaagaaaccactctttgctcatccataggaagcaactcctcattcattcaagtttaatcatgagattc
cagaaattcagggaaatcttcaagtttcacttctagttctgttgctattcccaccacatctgcaatgacttgaacccctcaaagtcatccatgagggctg
gaatccacatcttccaaactcctcttggtgttgatattttgacctcctcctataaatcatgaatgttcttactgacatctagaatgacatctagtccttt
ccagaatgttttcagtttactttgcccagatccgtaaaaacaatcactgtctatggcagctacagccttgtgaaatgtatttcttaaatAATAAAACTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA
ATAAATAAATAAATAAATAAATAAAACTTGaaagtcagtttctccttgatctatgggctgtagaatggatgttgtgttagcagacatgaaaacaacattc
atctctttgtacatatccattagagctcttgagtgaccaggtacattgaaaatgagcagtaacattttgaaaggaatgttttttctgagcagaaggtctc
aactgtgggttaaaaatattcagttttgtaaacgtgttgacacccaggttttattgttggattttttgagcataggcggagtagattagcagaattctta
agggccctgggattttcaaaatggtgggtgagcattggcttcaacttaaagtcagcagctgcaattagcccctagcaagagagtcagcctgtcatttgaa
gctccgaagccagacaatg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
783 chr15 25989729 25989730 RIP_Alu_chr15_025_01 0 + pAlu15-73350451 NA NA SINE Alu Y gcgcctctgcccggccgcccctactgggaagtgaggagcccctctgcccggccaccaccctgtctgggaggtgtacccaacagctcattgagaatgggcc
atgatgacaatggcagttttgtggaatagaaaagggggaaaggtggggaaaagattgagaaatcggatggctgctgtgtctgtgtagaaagaagtagaca
tgggagacttttcattttgttctgtactaagaaaaattcttctgccttgggatcctgttgatctatgaccttacccccaatcctgtgctctctgaaacat
gtgctgtgtccactcagggttaaatggattaagggcggtgcaagatgtgctttgttaaacagatgcttgaaggcagcatgctccttAAGAGTCATCACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATGACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAGATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTCATCACCAatccctaatctcaagtaatcagggacacaaacactgcggaaggccgcagggtcctctgcctaggaaaaccagagaccttt
gttcacttgtttatctgctgaccttccctccactattgtcccatgaccctgccaaatccccctctgtgagaaacacccaagaattatcaataaaaaaata
aattaaaaaaaaaaaaagaaaaacacctaggaatacagctaaccaaggagttgaaagatttctataagcactacaaaacattgctgaaagaaatcagagg
tgacgcaaataaatagaaaaacatttcatgctcatggactggaataatcaatatcataaaaatgtccatactgcccaaagcaatgtacagattcaatgct
attcct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
833 chr15 32529048 32529311 RIP_Alu_chr15_032_02 0 + Yi6AH65 CAATGCATGTTTAACCTGTG TCTACCATTCACAGCAAGTG SINE Alu Yi6 cagcttttatattgcagtttttgtagttatgttttttattctgttcccaggtatcatagaaatggagttcctagttctagagtatccttttctataaata
gagtaaaatgcagtttatttaataagagatgttggcactttgggcagaaagggagtggtaggcacgtggtacttctctttcatctggacatattccttaa
ttttaccttctttttttcctttctgtgccatgactcctgatcaatcaaatagacaactgaaattattcacagatctgaaatgttttattatttctgttac
cagatttgtagctcttcaatgcatgtttaacctgtgcacatagtctaattttcactgctggtgttgacagaaaaaaatatttcAAAAATGGAAGCTGAGG
GAGGCCGAGGCGGGCGAATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGG
GCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATTGCGC
CACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATGGAAGCTGAGGattgtaacataatgtaggta
tataatggcaatggcactatttctgcttttcctgtgctttgggtctacctgaagagtagtgtgcacttgctgtgaatggtagagcccacctacattaggc
tgatgatttattgttgaagtcaaaaaaactagtgaaattttactgagtagactcttgatcagcagggtagcagatgtctcccagaatattttgcttctca
aatttacagggcttctacctttcatagaaaaccatcctcacctctgactcatgtgacttatcttcgggtactgccttctcttggcagtctttgggactac
ctcaaagcagaattcatcctaccctgctcagtgttccctcgactcttcttccattatatggta UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 55 467 187 NA intergenic
833 chr15 32534280 32534594 RIP_Alu_chr15_032_01 0 + Yb8AC1691 CCTCAGTTGACGGGGACTAA AAAATCTGCTTGAGGCTGGA SINE Alu Yb8 gctttttcttcccttattcttttcactaagacctcagcctaatgttgaatagaaatggtgagaaaagacatccttaccttgttctcaaccttaggggtac
tcatcagtctttcacaatttagtattgtatttactgtaggttttgtcaacttgaaagtgttccttatctttctgatttgctaagatctttataaccataa
ctaacaaatgttgaattttatcaagtgcatttctgcatgtattgagatcctccaggtgctgggatgtcagtgctcctgttgcagggccaggcaacaagat
ttgtatgtgttttcacacaaaaagctgaatctaagctgcctacataggcccaggaataaatgcagcaccctcagttgacggggactaaAAAATTCCTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGCTCAGGAGATCGAGACCATCCTGGCTAACAAAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTCCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAATTCCTCCTctccagttggagacgtgacaaggaatctcggttctgctctgattctgcacaccgagcacataatccagcctcaa
gcagattttgaactctaatctgaaatacaatcataataatagagttcctgatttcagacattaacatcgaagttgtttttgagttcattatagaatcaaa
ggctaaaatattctgaagagacatttctgccatacaggccacatgctatctttaattgagaataatggaagctaactctcctaaactcttcttactgtat
tgaaatttaagtagactatatgatagagcatatattttttcattcattcaacaaatatttattgaatgtgtctgttaggggtccaggcatttttcaggct
ctgatatgatgaaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 441 115 NA intergenic
835 chr15 32796325 32796644 RIP_Alu_chr15_032_03 0 - pAlu15-32588079 NA NA SINE Alu Ya4b tttcagccttcctcatctcctttctgggcctccttgtctctcattactcacttttcctcccaggtcatgctatccacggccccatttcaaatacccagag
ctctcttatggaactggggctgaaagcaagctggagaagtcatgaccagtaagatcttaggggtcagttgtagaggggaggtgccctttgaaaggttata
tatgttaaaagagaagcctaaaaaggtggaacttagaggaactatatttttaaggctggaattgcaggtgtcttggcaggatggggatggaggaagaggg
atatgattgttttggaaggagaggtatcttctttccagcgccctcaaaaacacactctgtgtgtcatcttctattcttctccttAGAAAGCCACTGCTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAGCCACTGCTTGGgtcattcaaatgaaaggcactttgagtgttttaaaaaactaggtttcattttatattgcttgat
tctttctcagaacttgtgcctaggcttgaaaacatgtttatcggtaaacattagacatacttttagcaacaagcagtctggtaaacctttccagggtttc
tggcagatctgctcagggcagcccatttctgctcttttttttttttttttctttttttaactctttcttaaaacaattgtcctccaggaaacctacctgg
tcctgccaatcacattactgcatctcctgggcaatctggatcaaatagttaaacactccacgttaaagggaaaatgcacgcaagtacactcagcacaatg
acctgcacatgagaacttct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
843 chr15 33883613 33883614 RIP_Alu_chr15_033_01 0 - pAlu15-33675447 NA NA SINE Alu Ya5 ctaagagttttagttattgtagcattataagtttcaatatctaggaaagcacaaatctcctgatgacttttctacttttgaatttccctgacttatttat
gtatatttattcttcaaaaatgtcttttacatcagcttgtctagttgccaagaaaccatttggatgccattaaatgtatcgattattttagtaacaattg
atacctgcagtactgagtctatgtaatattgaaaaattcctttctagttatagcatcttagcatttccacttagtaacatgtcgtttcctttatatcaat
cttacatatttattgttttatttactgctaggtatcttaccattttgttgcctttttaaattgaaaagttttgaaatgttcattaaaAATACTGAAACTG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAATA
CTGAAACTGacatataaatacagaaatcacattttgagacagaaaagagattacaaataaacaacacttaatcacacaaacaaaaatcagacttctcatt
tgcaacgtctgaagttacaaaatgctagaagtcaaaaagagattactgatggaaaaaaatagtcatatatcaggaaggaaaatcattttagactaaaaaa
aaaccagagaggaatcacagagtcactctgtgtcaaaaataaataaataaataaggactaaccgaatataaatgagccaaaaatcagacttcataatgat
gaacgatgaagaggagaagggagcatgacatacatgtcaaatgatagatagatagacatagacactgaaagataacagaaatatgttatatgaatg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
867 chr15 37054308 37054650 RIP_Alu_chr15_037_01 0 - Ya5ac2434 GTGCCCCTAGGATGAAAACA TCTGTAGGCTGAAAAACATTGC SINE Alu Ya5 tcttagattcctctgcctcttgagtcactagagctatttgactaaggggtgggcaaaataaataccagtctatcatttggcatagaatctttgggggaac
atagttccgtgatgtgtaataaggtttgtgtgggataggtgagtagagttgctccttaatttaccatggcagagagagggaatcaaggacagagaggtgg
tggctggtataagagacctggaagaaagagtccctccttgaaggtgggcatggcgatgaaactgcccatagccaagtgtgtatttcgccactaagtaagg
ctaatggccaatttgggatgaggagataaaaatgatctataaagtgcccctaggatgaaaacatatggcctatttccaagcttaaaaaAATAAATTTTTC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATAATAAATTTTTCttataggcccatataaatgatttagcaatgtttttcagcctacaga
tataaaatcattttaataatcacaatcagcctcatttttatcccatggattgggataatatagaatagtgcattcccaagtagcaaggataagtattgtt
ttgtcaaactgtcttagttgtgcatctgtgtgtgtgtgtgacacatggacgtgtgcacagagacacagagagtcggacaataatataaaatgcatttctt
actcaagttactctcagaaatgtttgaaagccacgcctctatggaaatcttcagttattttttgttttgttagccatggcatttgtaaacatttctgaaa
attttcctggcttacgtgtaaataccctatttgtttctaaag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 457 105 NA intergenic
869 chr15 37307405 37307734 RIP_Alu_chr15_037_02 0 + 14146|pAlu15-37099151 NA NA SINE Alu Yb8 ataagagttttaagaatactgtgccagatagtaggggcagagaccaaatatatatttcttattatatcacaatatcacagatactaattatatgtagaaa
acttcatattaactccagaagttagaaacgtaacaacagtaagatctcaagaaaaatgaaagagacaataaagacaaaaccagaaattaaggaatgagaa
aataggaacaaggagagtggaaaaataaattcaggacatgaataataaatacgagtttgctcaagaaaaaaatcaaataattacacaaaagtaaaattgt
gaaagacagcataatcaaagacacagaggatatataaggaattactctactcacataaattgaagatacgggtgaaataatttttaaaaTTTAATTTATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAATTTATCaagaaagactatagaagatgtagaaaacctgaatataccacaattctccgttgataaatt
tcaggaagagaacagtggagaaggtggtaagaaaaatataattataagctattagttaatcagacaaaagaaaggcaattagaaactctaggaggaagaa
aaaaagaagctgcacttcaaggttacacaagtaaaatgaacaaaaagagaatttttaaaagttgaggcttgtaacattctcatttgtgtggcataggttt
acaacatggtattacattcccaaatctgcaggtttaattagctcattttgaacaatagtttgaaattaaaacattacaacttctatttattggctttcaa
ttttcaagatccatgtaagggaaagcaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
870 chr15 37478897 37478898 RIP_Alu_chr15_037_03 0 + pAlu15-37270743 NA NA SINE Alu Yc1 aagctgtaccttgtgctagatagggaatcatacccttcccaaatttgcctgggaaaaagcagagactccaagcaaggcgtgaggtcccaggctgctgagc
taagcctactattctcatgatcagggcagctcaggtttctctgcagtggggaatagcaaactctctgaaatatctaatatcaaaaccgtatgcctttaag
gtgaatagtcatggacacattctcctttgggagaaaaaagaaaaaagttctactaaaactaaagtcccagctgatttccgacacactcagcaatgaacaa
attgttaccaggccagccttccaggctagaggttctgacttcactccctcaggaccctcctcccaagtggaaactaacttattttTAAATGTCTGTGTTC
GGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGT
GGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACT
GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAAAAATAAAAATAAAAAAAATAAAAAAAAAAAAAAAATAAATGTCT
GTGTTCcctgtcaatgcaggcagacattttaaggagactttagacactatgcattgttacatgaataaccacatctgcatgcaaagcagtaagagatact
aactccaatagaccaaatgtgtgcttttccccattgctttcaactccaagaatctgaacaaacagaaaaggtcattctgatcttttttcttcaaagatta
acaataggaaaacaggaatagtatattttcttatgataaaagcagaagcttgttggcaacttcttttgaattcttactaccaaccacagtactggtgtta
aattaaaaaattactcatgacacttgtgtcaaagaacacaatttcaacaaattgagttttaaagatctaattggcttttactagtgattca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
888 chr15 39805040 39805359 RIP_Alu_chr15_039_01 0 + 2365|pAlu15-39596787 NA NA SINE Alu Ya5 tatgggaatgggcagtttacttaaagaataaaaccagtagtgctgggcgtagtagctcatgcctgtaatcccagtgactcaggaggctgaggccgcagga
ttgcatgaggccaggagttcaaaacaggcctgggtaacatagtgagacctggtctctaaaaagaaaattttttttctttatattacctttaattaactct
taacaactaaacctttttttaaagacctaaaatttatttttaaagacctatgcaggcatggtggcatgtacctgtagacctagctacttgggagcctgag
gcaggaagatcactttagccaggaggctacagtgagccatgattgtgccactacttgggcaacagagtgagacttgtactcttaaaaAAATAAATAAGTA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAATAAATAAATAAATAAATAAATAAGTAaacccaggagcctcttaacctagatcttctttttaatttagttaagtaatcaatgcatattttccttt
gtgcacattttttgggggattatttattaacaagtaaaaatgcatatattggtctataacatgacattttgatgtaaattgtagaatggcatacagaact
tcttgatagtatgattttacctcagttgggtttcattgcgtctatattgatataagtgtttttactcctgtactgagttcaggctgtcttttgattacaa
tttgttattagaatgcagtagtgacagcttggtctctggagccagatagacagggtttgattctggttctgcctcttactggttggacatccctgcctct
cactggttggacatccctg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
901 chr15 41447733 41448045 RIP_Alu_chr15_041_01 0 + Ya5NBC241|238740 GGTTCCAATAGAGAGCAACAGAA ACCTTAAGCTTTCCCCCAGA SINE Alu Ya5 gctattgtcttggatgataagatcagaattcaaaacaacctcaacaaattttaagtgaaatggtaacagaaaaaagcatacaacatggagatcaatagac
tacaaagaagaaaaacaagttctacaaaaatcaagtacaagaataatcaactaggtataaaggcattggggaaagctatcagagtcctggaagttaccag
gtgaacaaaaaaatataacaggttgggctatactgatacaagacattgcaagattctgaagtaaaattcttacttagcttctaacagactttcaggaaaa
taataaacataatttagttccccacaattaacatgatatttggagaacttaaaggttccaatagagagcaacagaaacttaggtttAAAGAATGGATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAATGGATCTTctgggggaaagcttaaggtaacaaatatagtttaatttgaagatggaaaacaaccaaaaggaagatgtgccttc
aagtatagaaaagaatttttatctagaaaataatgacctatactatcatcattaccaagaggaaataaaataattccaagttccgataaaaactagggag
ccattctcttgtggacttatcaagaggtaatatgaataccagaggctaaactacatgtcaacaaccacatattctgcaatttccacttactcctgaaatc
cctttcccactcactattcccaaccctacttcccaacttggaatggcagtctatcttcccatatgaatctactcctcaccgctcctttgaaaaggtttga
gcttctcctttg UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate sequencing|Candidate screening|Selective database search followed by genotyping |Trace comparison NA 55 392 66 NA intron
907 chr15 42289306 42289307 RIP_Alu_chr15_042_01 0 - pAlu15-42081141 NA NA SINE Alu Yb7 aaacttgttccctagaattcaaggaagagccaggcgtatttagaataacataaaaacttaattcgaaaactcacattttgtgattaccagattagggaaa
tggaatggtgtttggaaggagaattgcactagttatagaggaaaatgaccttctgtgagagttggatgccctgtggttgctcttagattaatttgcctcc
ttacttgtcactgatcacacctacttcttgttgcagaaaaactgttcctttccatagctatagtcttaacctgttgtctaaataatgtagctaaatcagc
tgagcacatgggaatcagagactaaaagaagcacattaggcattcaataaatatttgctgaatgaatgaaatgctcagtaagcattaaAAGATGATGATA
CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA
TTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGATGATAatgacaat
ggttaggatgaagaagaaaaggaaaggggacagaggaaggcatgaatagctgtaactctaaggcaattggctcaccaattacactgctgaagcgataaca
taacaatcacagttttcaggtactcggatgctggttctccagtttgtgtatcatctcagatttttggtttagattttcccttaaactgactcccttttag
tcctccatttaatgtctattaatccacagagaaaatgaaggaacaagagattaatagtagctaaaactttccaatgttttctttgtgcaaaggcttatct
cattttactctcacagtctctcatagagagggactattattatacctgttttacaaataaggaaactgagccttcgcagc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
919 chr15 43836224 43836521 RIP_Alu_chr15_043_02 0 - pAlu15-43627967 NA NA SINE Alu Ya1 agaatggaaccaagttagaaaacactcttcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaacatagag
aacaccacaaagatactcctcgagaagagcaaccccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccaga
gagaaaggtcgggttacccacaaagggaagcccagcagactaacagcagatctctcgggagaaaccctacaagccagaagagagtgggggccaatattca
acattcttaaagaaaagaatcttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttAAAGACAAACAAAT
ACCGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCACAAGGTCAGGAGATCGAGACCATCATGGCTAACA
CAGTGAAACCCCATCTCTACTAAAAATATAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATGG
CGTGAACCCGGGAGGCGTAGCTTGCAGTGAGCCAAGATCCCACCACTGCACTCTAGCCGGGGTGACAGAACAAGACTCTGTCTCAAAAAAAAAAAAAAAA
GACAAGCAAATgctgagagatgttgtcaccaccaggcctgccttacaagagctctcaaagaaagcactaaacatggaaaggaacaaccggtaccagccat
tgcaaaaacatgccaaattgtaaagaccattgatgctatgaagaaaccacatcaattaataggcaaaataaccagctaacatcataatgacaggatcaaa
ttcaaacgtaacaatattaaccttaaatgtaaatgagctaaatgccccaattaagacacggactggcaaactggataaagagttaagatccatcagtgcg
ctgtattcaggagacccacctcacatgcagagacacacataggttcaaaacaaagggagggaggaagatctaccaagcaaatggaaagcaaaaaaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
919 chr15 43855272 43855607 RIP_Alu_chr15_043_01 0 - pAlu15-43647033|238357 NA NA SINE Alu Yb8 tcagattttcacagcaagcttgaaagcattttgaaggttatagtgcatccttaataagtagggagggacattctagaaatatgaaaaaaagacatgcttt
aaaaacaaggactgagcttccagtaatggccaaataaagattctaccagaataaacacccttacagacagctactgtaaaatatggacacattataagaa
gcagctacatggaggcacaagagggtgatggaaggcaggtagagtctagggaggagtccatgcaccagggaagacattacatggagtaggtactccatgc
tgctgcttctagcctgggggtaggttcagttagcttgcatggaacagcaggtacagtgaaaaataaacacattttttctggccttAGAAATCTGAGTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATCTGAGTACTgagtccagggcaaccgcagtcactgaagaaaagggaaatttgggaggaaa
aacagccaggagggggatacccaaattctgcctgcccacatctctggctggctcctgaatcacacatgcatggagcagactcaaagcacctcagctagag
gtaaagaacctaaagagagtttggaactggttaaaaaccaaaaatagtttggagctcatatttaaccaggttaattgtgtgctaaaaggaaagaaacatg
actcatcaaaagaaattaacaaaatccagtatctacaacatgaaatttattgtgtacattacacaatcagaaagtactcaaaatataacaaatcaggaaa
agtgggagccctaacatgacagtcccagaggagct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
964 chr15 49685008 49685332 RIP_Alu_chr15_049_01 0 - 238258 NA NA SINE Alu Yb9 aagaacaaaactcccatctcacatccacacccccacacacacacatacaaaatctctataagtgtgttggtttaattctaggtctctaatgttatgtgga
ttaatcttcaagatttcagtttaaagtgttgggtagtttattggagtcccatcttttgtcagatggagcactttcatttttgttcctctagatccaagag
accatcaaaatgcagctcagttttaccctcactcttttagattagcaaatgctgttaggacaaattggcattcagtgctgagcacagccttatgttctcc
ttttctcttagattttggcccactaattcctcacagtattttttatttttttagctctttgagtgtttttacatctatgttcattAAGAATATTAATCTG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAATATTAATCTGtatgggctgggccgggtagctcacacctataatcccagcagtttggaaggccaaagcaggc
agatcacttgaagtcaggagttcgagaccagcctggccaacacggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcacacgc
ctgtagtcccagccacttgggaggttgaggcactagaatcacttgaacccaagaggtagaggtggcagtgagctgagatgatgctactgcactctagcct
gagtgacagagtgagacgctgtttaaaaaaaatacatatatttatatgtttttttcccccgttgtactgtttttgtcgagttttggtatcatgctaagat
gttttttgtatatttcatgaagct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
968 chr15 50312484 50312798 RIP_Alu_chr15_050_01 0 + Ya5-MLS11 AACAGGACTTACAATGAGAGTATAGCTC AGACTTTGTGTTTGCGACTCTTG SINE Alu Ya5 gctttaaggcaaactagattccatacattctttgccgttcttccttttgtacatcatcaaagagctgcttggtgaggttgtccattttttctgtaaaaag
agaatgctttttgagatatgtctgccaaatcaatgccttgattgtttcatgttatgtttaagaaagtgagaatgtcaggacaatcatgtgatgtttatta
ttaacaggacttacaatgagagtatagctcattttttataaacaagaaataaagatgagggggtttcaaaataataattctcacaaatttgtcagattgg
aattatcaataaatagtttcatttatagtacttttgttggtctgttatttattaaagtagatattggctttgagacaatgaatattattAAAAATAAATA
GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AATTAAAAAAAAAAAAAAATAAATAaataaatagaaaccctttgggaagaaaatgatccatttgtgacaaggtttctcggtcttggcactattgctactt
tgggctggataattctttgctgtggagaggggctgtcccacgcattgcaggattctgagcagcaaccctggcttctaccctctagaagccagtagcacct
ctgctccagttgtgacaacccaaattgtttccagacattggcaaatgtctggggggtgaggtggcagcaaagctgagaaccactcatctgtgataaccaa
gaaaataatcaagtgtctgtctctatctgggaaagaggaagtacaaaaaaggcagctgttaacactgaaatacaagagtcgcaaacacaaagtctgcagg
ccgaagggcaggac UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
981 chr15 51969632 51969936 RIP_Alu_chr15_051_01 0 - pAlu15-51761375 NA NA SINE Alu Ya1 aaaaacccatcaaaaaatcaatgaatccaggagctggtttttttaaaaggtcaaaaaatagataggccactagccagactaacaaagaagaaaagagaga
agaatcaaacagacacaataaaaaatgataaaagggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctacgc
aaataaactagaaaatctagaagaaatggataaattcctggacacatacactctcccaagtctaaaccaggaagaagtcaaatccctgaatagaccaata
acaagttctgaaatcgaggcagtaattagtagtctaccaacccaaaaaagtccaggaccagatggattcacagccaaattctaccagaggtacAAAGAGG
AACTGGTAGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCT
AACACAGTGAAATCCCACCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGATGGCAGGTGCATGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGA
ATGGTGTGAACCCAGAAGGCGGAGCTTGCAGTGAGCCAAGATCATACCACTGCACTCAAGCCTGGGTGACGCAGTGAGAATCCGTCTCAAAAAGAAAAAA
AAAAAAAGAGGcgctggtaccattccttctgaaactattccaaacactagaaaaagagagaatcctccctaactcattttatgaagtcagcatcatcctg
ataccaaaacctggcagagacacaacaaaaaaagaaaatttcagatcaatatccctgatgaacatcgatgtaaaaatcctcaataaaatactggcaaatc
gaatctatcagcacattaaaaagcttatccaccacgatcaagttggcttcatccctgggacacaaggctggttcaacatatgcaaatcaataaacataca
ccatcatataaacagaaccaatgacaaaaaccacgtgattatctcaatagatgcagaaaaggcctttgacaaaattcaacacccttcatgctaaaaactc
tcaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
998 chr15 54151129 54151434 RIP_Alu_chr15_054_01 0 - Ya5ac2456 TGTTTTTCCTTGCCACACTG ACAGCCAGTCTCTTCGTGGT SINE Alu Ya5 ctttaccccacattatatacataatagtctcagtctattcttattttcaaggtagtattaagtgtccatatttatcaagccacattcaaggaaatcatgt
cttaactattttggatgttgcctctccttcaacttgtacatgaaactccagcagatttaatattggcatgcatcatctagtcaaacctctcacatgttct
tcaaatcaatcaaatttgggattctcaacattttctgtgtcaataaaaggaatggaattagtagattcgatgaataactgtttttccttgccacactgga
cttccagacgccatttggattgggtttagaagatggggaagtttagaagatgtttcttggcctgagtctcttaagaggagagatgtagAAGAGAGAGTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAGAGAGTAAgaccacgaagagactggctgttgactgcagggcaccaacagccgccttggtggtggcagtagctggatttggggcagtcgaag
tactctgggaggagttacttgaaattgttacaacagttgtttgattggaataaatctgcgtgggtaggagcagtgccagcagcagcagccccagcccaag
cctggccaccactgctctgcccacgtcccctccgtcggtgtgcagcgtgtctggctggatgctgggtgcttggagaactgctcgctccaggagggcgcgg
gcaaggacgataacaactctttatcagattttcttttgcaaatattttctcccattttgtggcttaccttttcgttctcttgacaatctttttcagataa
cagaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 459 142 NA intron
1017 chr15 56700157 56700458 RIP_Alu_chr15_056_01 0 - Yb8AC1703|pAlu15-56491897 TGGTGAATGTTAACAAAAGGACA TGCCAAGTTAGAAAAGTAAATGGA SINE Alu Yb8 tttgcttttatctgttgtttgttttctttttctgaagtagtgttggttactgctctgttattggcagattgaactacttttttttttttttttttttttt
tttttgagacagggtctcgctctgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacttccacctcccgggctcaattgatcctccca
cctcagccccctgagtagctgggactataggcatgtgctaccacacccagctaatttttgtatttttttttagagacagagttacgccatttgcccaggc
ttgtttggactacttttaatagtaatttgtgtggtgaatgttaacaaaaggacatactcaaaggacatactaaaaagaatcctAAAAAATACATATTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAATACATATTCTTtagttacttattgtgaaaatgtaactatcttccatattttaaaaatcttaactttaaatatttagttaatgtggaatccatt
tacttttctaacttggcaagttataactatttcacttgtcaaatttactttggtagcagtgtaagcaattgtttgcacaatactttttttttttttgaga
tggagtctcagaaaaacctgtcacccaggctggagtgcagtggcatgatttcagctcactgcaacctctgcctcccaggttcaagcaattatcctgcctc
agcctcctgaatagctgggactacaggtgtgtgcctccatgcctggctagttttttgtatttttagtagagttggggtttcactatgttggccaagttgg
t UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 487 169 NA intron
1023 chr15 57500190 57500509 RIP_Alu_chr15_057_01 0 - pAlu15-57291945 NA NA SINE Alu Ye5 tgcccattttcctccagaaactaaggtcctccccaggttgtcctgcctttaaagcagagccatcatggacttaaggacctttctgacctacagtgatggg
gtccacatctactcccacacaagaatctttgttcaagctgtcagggatctgcctttccactgagctccaattctacctagaacattgcccgtcgaagtgt
gatctatgcacaagaacacgagcccctctactgttaggaatgcagagttcaagggtcccaacctgggtctacaggatcagaatctgcattttaacaagac
ctcctgctgattcgtatgcacatttaagtctgagaagtactggcctagagaacgtgaccccaccagaacacagtagagcacgttcttcAAGAGCCTTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAGCCTTCCTtggcttcgtcactggatgagtgatactgggggtaggaaccctgtcattaaaatcattgggattatacaa
taaatcttataaagcactgggaagaaatgtgataaaaatgaagaaacgaaaggaaaaattctctctaggctgacatttggtatgcaacaacatgcaactg
gtatttggtataaaatgtgtttgtttttccgttagactcagctgtcctaatttgaaagagcctccaaaaatatcagttgctatttagcttcccttagtta
agggttgtttaattttgttagacaatgaagctaattctcatcactgcaacaggaagaacaatgacatgaacccacaaaagatgtccccgcctacatatgg
ttacagtggcataagctgg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1030 chr15 58444535 58444536 RIP_Alu_chr15_058_01 0 - pAlu15-58236395 NA NA SINE Alu Ya5 actgtttctttcattaaacaaagttattaatcagtcaggagagagacttttcacattctgaatttacaaactgtgctttcttaagttaaatggcatgtta
ggagtatttctgatatgaaattggaaacttgcagacaccagaaggcattgcttatctttgtaaatacacatgttccaattaaaataggtactaaaatatt
ttggtggcacctcaaaactcccaatttagatttaatttagattaaaacacttactctttttaataaagttataaaattaattattaaaattgcctattga
agattaaaggcagtggaacgtttattttccttacaaaacaattttgtcttcaataagtgtgattgtgttaatcaattatgcTATTAAAAATACAACTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATTCCACTGCCATATTAAAgtcatgacagtttttataattatagaaattatacctagctgcttatatagccataatcctgcaataagtataaata
attatctctattaattcagtttgcagttactctctattaaatcccgagttaaatggcaatttggggaccttcatttaaaatcctactaaatctctgttgt
tccatctgactgccaaagccccacatatgcacctcctactgttgattccagaaaccaatttatgaataaaatagtttttaaaccacaagtatttaaaagg
tccatttaagcttgaggtttgaggctctcaagaaaaaaggaaagagagtgtacacattgggtagaggatgctgacgaaagagatagaacaaatcttggtg
tctgg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1040 chr15 59752052 59752166 RIP_Alu_chr15_059_01 0 + Yb8AC734 CAAATGTAATTCCAGTGGGTTG GGCTCACAAAGCATGATGAATA SINE Alu Yb8 aactccacctcacccctttcaactaacttttacaaataaaacagcgctgtcatacctggttaactgtttatattctcatatcatatcacaggtaagataa
attctgaatgaattagttgactaaaaaaaaaaacagaaaaattaaaagaataaaagtgaatatttatgagaatccttaagatgatatgaggtactatgct
ataaaatgaagaatgtgttacaaagtaaaagatcaacaaatacaactacctgaagacctaaagtgttatatagctaaagcatagtgtagaataaagcaaa
taacaggctcacaaagcatgatgaataaagcattggatgaatagtataattatataaagaactcacaaaattattttaaagcattaatAATATCCCAATA
GAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATATCCCAATAaatatgtagataaagggcatgaaaggatagttcatgaaagagagtatactacagtattagtaaatatttataaa
aatattcaattcacttaaagaaatagaaattgaaattattcacctgattttgataaaaaaactgataatacccattattgatacagcttcaggaaaattg
atattcttaatattgctagtggccataaaattattacaatatatttgtaaagcaatttagcactcttaatcaaaagctatcaaaatatttttaattcagt
aatgacacttctgggaatctagcctaagaaaataatctgatgcctggaaaaatactgatgcatgaagatgtccaattcagtattataactgcaaagacat
gaaactatacacaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 653 527 NA intergenic
1061 chr15 62420246 62420556 RIP_Alu_chr15_062_01 0 - 10196 NA NA SINE Alu Yb8 ccaggagttcaagatcagcttgggcaacatagcaagactctgtctctataaaaaataaaaaaaaattagctgggtgtcatggcacgagctggtagtctca
gctactcaagagattgaggcaagaggattgcttgagcccaggagtttgaggctgcagtgagatctgatcatgccactacactccagcctgagtgacaggg
caagatgtctttgaaaccaaccaaccaaccaacagaagaaataaatgacagtttaataaatatttcaggccgggcactgtggctcacgcctgtattccca
gcactttgggaggccaaggcgggtggatcatgaggtcaggagattgagaccatcctggccaatgtagtgaaaccccggctctactAAAAAGATAAAAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATTGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGATAAAAATTagctggacgtggtggtgtttttgagacagtgcctcactctattgcccaggttggagtgccgtggtgtgatcatgg
ctcactgcagtaccaactacccaggctttaagtgatcctcccacctcagcctcctaagtagctgagaccacaggcacacaccaccatgcctggctaattt
ttaaaaaactatctgtagagacaggattttgccatattgcccagtctggtcttgagctcctgggctcaagtgatcctctggcctcggccccccaaagtgc
tgggattacaggcatgagccaacatacatgaccttaaagtggtttcacagaagttctacctagcaacttcattagccctttgctgcaaggtaattaggct
gcccagaata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1076 chr15 64420878 64421187 RIP_Alu_chr15_064_01 0 + pAlu15-64212624 NA NA SINE Alu Ya5 taaaatttctaacatgtccttgatatattaatggtagcatataaaatttggcataaaatttaccatttcctagggtctgactattactcagcagctttgc
ctgccttctttccaaggccagttgtttatttctctcaattctttgttgttgctcttctgttaggcttctacttaactcagaagcaaacatctcactttca
gataagtttgtcagaaagggatctaattcagtagaagtgacatcatgttcattattctccgcaacttcatctgcaatagaaaagaaatagtacatctgtg
gtgttagactagttagagaagggcttctcattgaaaaagaatttaaagtggcaaggtgacagacctgaaaaaacaatttgtgaagtatAAGAATGTTGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATGTTGTGaatacatgcttgattcaattaaataagaaatatttataaatcagtttaaagaggaatgctaagtcaaataaaaatacaa
tttaaaatatgcatgaaggccgggcgcggtggctcacgcctgtaatcccaacactttgggaagccgaggcgggtggatcatgaggtcaggagttcaagac
cagtctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtggcgcatgcctataatcccagctactcaggaggctga
ggcaggagaattgcttgaaccgggacccgggaggcggaggcagcagtgagcaagattgcgccactgcactccagcctgggctacagagcaagactgtctc
aaaaaaaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1083 chr15 65321533 65321853 RIP_Alu_chr15_065_01 0 + Yb8AC1707 TCATTAACCAGCAAGCGAAA TATTTGACAGAGCAGCACCC SINE Alu Yb8 agtaaatattcatttccttcttcccatctcactttttttcacatttgtgacagcactcctgactagaggtaggttacagatgcactgaggagttagtaag
atacattacaatcaggaaataaccatctcctttaagctgctctagccttgcccttccaccccagaccaccccctaaaataaagttgaaatttttcttttc
cactgctaaggcatatgctgagacagaagagaaggcaattaggaaaattataggaggcagcagagtctgacgtcagctgaaaggaaaagtagctattatg
aaagaaaagaactgagcaaaatatgacttaggaaaaattcaaaacctagagttttcattaaccagcaagcgaaaagacagacttttAAAAATCATATCGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATCATATCGGattcatactgttgcaagcaattacaatttcttacccacaacttcatgagaatgtcatacaaggtgg
gtgctgctctgtcaaatattttgcagtagttgtgaaaaggttagtccctaaatactgaaagtagattatactgctccagtggaaagggactttgtagcat
ggtagtatttaaaggttaaaactgtgcaacattagagttgactttacagacaaatgtcaggaaactcatatctgagattccctgtgtaatcataccccag
tcttctggtgcaagtttatgcagtatttgttgcagtttatatgacaggtcgatcactggagtagtatggacttgctgaggtaagagtcactggagtagca
tagacttgctgagggaagag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 56 465 131 NA intron
1095 chr15 66976379 66976380 RIP_Alu_chr15_066_01 0 - Ya5ac2465 TGATGGAGTTTAAAAAGTGTCAGC AGCTGCCCTAAGTCACCAGA SINE Alu Ya5 aaaacctcctgaacaacatgttctcattaactgttatcatcctcatgacagctttcttttactagagacttgtgctgtgcttactgaatcctcacctctc
ccctgtcaggcgggtattcttattgtacaggtaaatgaggaaagagccagactctgctccctagaaatagccacaaactcagccaatgtgtaaccagcac
cctgtcaggtcagagtgctttgtccacagaagtgctcagggccaagtggaagcagacagagcttctcagctgccctaagtcaccagatacttccattgct
tgcaactcctgatattttagacattatagaaatgataaaatagggttacaaaaatcattatgtatttgagatgcttacatttaataAGCTGACACTTTTT
NNNNNNNNNNAGCTGACACTTTTTaaactccatcaaaatatataattcatcatcattatggaattcacaggatatttacaggatttataaaaaataaagt
gagatcagtgattcatcactacttttataaatcctgtaaatatcctgtgaataccataatgatggtattctacctaccagcagtgccttccactaatggg
atccaacgctgaagctgtaagttgcacatctctttcttctgtccttgttggtttatctctgtgatcacagatagaacctctttgggatggatgtaaggtc
caaattctaaatttaagggcctctgtgaatttgaagcccaggacacaataggccctgaatggaaggaaatattgaaggccacccttttaagcccatcagt
aagctcataa Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 463 145 NA intergenic
1105 chr15 68195692 68195693 RIP_Alu_chr15_068_01 0 + Ya5-MLS21 TGGAGAGTTTCAGGACAGAGCAAC CTCCCATAACACCTATGCATTTCTC SINE Alu Ya5 atgattccagctagatgacattctgggaaaggcaaaactatggacacaggaaaaggatcagaggctgtcaagggttaaagggaagggagggatgaatagg
tggaccactggagagtttcaggacagagcaactactttgtgtgacactttatacatttgtcaaaatccaaagaatgtacaatatcaagagtgaaccctaa
tgtaaactgtggacttcacctaatcatgtatcactattggttcatcaattatagtaaatgtactatgctaatgcaagatgttagtaacgggggaaactgg
gggtgaagtgaaagggtgttggggaattctactttctgcttgatttttctgtaaacctaaaactgattttttttaaagtcctttAAAAAAAAAGAGCGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAGCGTCatgaagtgtaatcacggagaaatgcataggtgttatgggagcaatctggggtagggggtggggagggcttgggagcatggg
ggtcactaatgaagtcaagacccttgtatgtaaagttagacagacaaagtttcaagttccacctctgccacttatccaccatgtagccttagccaagtta
cttaacacctcttaaacctcagcttactcctctgtaaaatggggctaatgacgcctgccaccaaattattatgtgatttaaataaaatgcaaataaagta
cttggcactgccagtgatgagagtcagtgcttggcgaaagagagctccttttcatgccatggtgggtgaggaggctggctcaggtggagagcaggaggag
aaa Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
1162 chr15 75697927 75698291 RIP_Alu_chr15_075_01 0 - pAlu15-75486694 NA NA SINE Alu Ya5 ctcactcatgcgcatgtttcctttcaaagaacattcacgggggtctgttctgtgtcacacttcactctgagctacagacatactctctgcccctgggtac
ctcactctctagcaggtgagacacacacacccatgactgaaccaggattacattacaggagagatgccaaatgctgaggctttggagcatatttccctct
ttgctcaaggtcactaggaagctctcacctttcgtcattaggcaggacttggtggcattctttcctgactggcttcccttttttagcttttatcttctta
tcatcttgtagcataatttttctgtcagttggttcaaatcactatgggaatgaggtgtgctatataccagtttcataaaatcactactatAAGAATAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAACAGgtgttggggacaagaggtgatatct
gactgagtaggtcaaggatggcctcctggaggaggtggcctttggggtggaaggttgcaaaggctgctggggcaggagtctgggacagttctccagaaca
agatggcttagaggtaggagtgtgcaggacaaagtggggaggcccaggtggctttgctcagggactggtgggaaaagaggtgggtgggcaggttgaggcc
cggtggtgcaagcttcctgtgtgccagattcgtgtctgtataagaggggcttaccagcacctcggggtggcccgtgtcctcactagcccccctcattccc
cagccttctctccagcagctccccccacccgccagcctggccctgagctggatgctaaaagtcct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1170 chr15 76723726 76723727 RIP_Alu_chr15_076_01 0 + pAlu15-76512598 NA NA SINE Alu Ya5 acgatgtcaggagatcgagaccatcctggctaacacggtgaaacctcgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaattagctgggcatggtg
gcgggtacctgtagttccagctacttgggaggctgaggcaggagaatggtgtgaacccaggaggcagagcttgcagtgagcggagattgcaccactgcac
tccagcctgggtgacagagcgagactctgtctcaaaaaaaaaaaagattctattcacaatagtaacaaaaaccttagaatatatctagcaaaatatacgt
aaggcctttcatgaagagtgttgctatggtctgaatctgtcttccaaaacacatttgttaaaatttaattgccaagataatattAAGAGGTAGGGCCTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAGGTAGGGCCTTTaaggagtgattaagtcataatggcaagtcctcatagatgacattagtgtcttataaaagggcttgtgtggggggtttatc
tgttccttctgctgcatgagaacatagcatttgtcccctccagaggagccagcattcaaggcaccatcttggaagcagataccaggccctcactagacac
tgtacctgctggtgccttgatcttggacttcccaacctccagaactgagaaaataaacttctgttgtttgtaaattacccagtctctggtattttgttat
agcactacaaaaggcctaagacaaatacaaaaatactcaggaagagctgactaaattgaaatatagaccatatatattatgaatgggaggactcaatact
ataa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA promoter
1189 chr15 79179641 79179642 RIP_Alu_chr15_079_01 0 + 280 CACCTTCTCTGCCTGTCTGCATC GACACTCTAAGGTATCTGTAAGGTC SINE Alu Ya5 tagacctaaaggtaggtaaatcttcctctcctactatcttcctcctcacgtatatttccaaaggttttttttccctatatttatacaagtaattagcttc
cgtccatttgtttcatcacctataaaataggaatgatctttgcctcatagatgcatgagtattaaagtacataagataatacatgtacggcatttaaagc
agtttgcaaacactcaataagtgttataagaggagaaaatttccacttaaaacttcttccaccttctctgcctgtctgcatcccaggtttttggtatagt
ctgggacttttgacaaagtttaatgctcgttaccatactgatgtattttttttctccaagaattatttaacatctgcattattttgaaGAAATAAGTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAATAAGTATTtcttagttctaagtttaaattatttcagtgctgattatctgtcctactgtaatacagtcttctattatagagttctttattttga
cgtacagatcaactgcatagtatttttatggaaaggtacggcagaggcatattgagaccttacagataccttagagtgtctttctattgctttaaataat
gaacaatggatgacttcttggggtttgaaatcttgctttgcaaactttccccctcagaattttatgtagctgctggagtacactgaggctagctccattt
ttcttccattgcctacaattttctacatgcctagataataataggcatcttcctttatccttgaaataaaaaaattatctactttttatctcttaagaat
tct Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intron
1193 chr15 79822720 79822721 RIP_Alu_chr15_079_02 0 - pAlu15-79611584 NA NA SINE Alu Ya5 ccaatttcgaaaacgttaaaacatgagaaaatgggcctcttaagatgaaaaagttataagacgttaaggaggaaatcaaatacacattaataagtgatta
tgaaaatgagactattacatatgaaaacctatgggaagagtaccaaatttccacgagaaaaaacaaaaccctaaatgttctggttttttactaagacaaa
aaaaaataagccctctaggaaagtgaaagaacaagaaaacagacatgaggaaagacaataataatgaatggagacaaaattagaaataaacaaatctgga
aaaggataacacatgtcctaggaagagattatataaaacagaattaactcctccagaatattaaaaaatatggacatctgcccagttagaaaaTAAGCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAGAAGGAAAGAAGTTAAGCTTaactttgaagccaatttctatcaaagagtacaaccagaggaaacctatggctaaggagattcataacattc
gtacatatatatatatatatatatttttttttcacgttctgaattcaatatcactttattggtaaaagaatattgtgcctgaacaggaattaacctacca
atggaagttagattattaggaatctattaataaatatataagaatagataacataagaaaaacaataatagataatgtaagaagaatgtcattgcaagac
attttcaaaatgtatttaacatccatggatgcacctagaggacattatgctaagtgaaataagtcaatcacaaaaagacaaatactgtatgattccactt
atatgaggtatttagagcagtg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1201 chr15 80745748 80746034 RIP_Alu_chr15_080_01 0 - pAlu15-80763068|pAlu15-80533022 NA NA SINE Alu Sg tgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccatgcccagctaatttttctgtttttagtagaaacggg
gtttcaccatgttggccaggctggtcttgaactcctgaactcaagtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgc
accaggccatgaaacactttcttccacccacggctttctcttctctccccatttacagcaataagacagcctaacctgggaaagagagagagagggaagc
tacttccaaatggatgcctgtccccatcagtaataaccaagtctattcaagtgctagatgttaactttaaaagaaggaaacatcaaAAGTCCAAGTTTCA
GCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTAGGAGGCTGAGGTGGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGTCAATATGGT
GAAACCCCGTCTCTACTAAAAATAAAAAATTAGTCAGGCATGGTGGCGTGTGCCTGTAGTCCCAGCTACTCGGGAGAGGCAGAAGATTCGCTTCAACCGG
GGAAGCAGAGGTTGCAGTGAGCCAAGATCGTGCTACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGTCCAAGTtcgc
ctagctttgtcaggaatgtttttaccctcagtctgtaagtgtgaccaaatatattttttaaaggtttaccctcaatctgttaagttcaaaggtttactat
aatctcttcataagaaaactattggaaagatggaataaaatacacagaaatgtccttaacaggtaaatatttatttttctttcttattattatactttaa
gttctggggtatatgtgcagaacgtgcaggtttgttgcataggtacacacgtgccatggtggtttgctgcacccatcaactcgtcatctacactaggtat
ttctcctaatgctatccctcccctagccccccaacccccaacaggccccagtgtgtgatgttcccccctccctgtgtccgtg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1262 chr15 88760819 88761113 RIP_Alu_chr15_088_01 0 - pAlu15-88546943 NA NA SINE Alu Yb3a1 aggacttcatgtctgaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaacgaaagagcttctgcacagcaaaagaaac
taccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatatacttatctgacaaagggctaatatccagaatctacaaagaactcaaa
caaatttaaaagaaacaaacaaccccatcacaaagtaggggaaggatatgaacagacactttgcaaaagaagacatttatgcagccaacagacacatgaa
aaaatggtcatcactggccatcagagaaatgcaaatcaaaaccacaacgagataccatctcacaccagttagaatagtgatcattAAAAAGTTAAGAAAC
AGGCTGGGCACAGCGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GAGAACTCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACACGGGAGGTGAAGCCTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
TCAGGAAACAaacaggtgctggagaggatgtggagaaataggaacacttttacactgctggagggactgtaaactgcttcaaccattggggaagacagtg
tggcagttcctcaaggatctagaactagaaataccatttgacccagccatcccattactgggtatgtacccaaaggattataaatcatgctgctataaag
acacatgcgcacgtatgtttactgcagcaccattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagaatggattaagaaaatgtg
gcacatatacaccatggaatactatgaagccataaaaaaggatgagttcatgtcctttgtagggacatgggaacatcacacactggggcctgttg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1265 chr15 89203116 89203420 RIP_Alu_chr15_089_01 0 + pAlu15-88989245 NA NA SINE Alu Yc1 gagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcttggtggcacttgcctgtaatcccagctact
caggaggctgaggcaggagaatcgcttgaacccatgaggcagagctgcagtgggctgagatcgtgccactgcactccagcctgggtgacagagtaagact
ctgtctcaaaaaaaccaaaaaacaaattatccaggcttggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggaggatcgcttgaacct
gggaggtggaggttgcagtcagctgagatcgtgccactgcactccagcctgggcaacagagtgagactccaaaaaaagaaagatAGAAATGTCTTTCATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGATTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGAAATGTCTTTCATAatgtaagaaactagattttttttttttgtaatagggaagggttgaattctagtagaagctgaaacccagataaaaagatt
gcgaatacccaaatccaatcatagggagccaagtgaaggccatcctgggagccgcatgatggcagcacacagctggagctctaacagttcctggcaccta
gagccaaacggacaggggaactgggttttcacaatcaattgtattgatctaggaaaactgaaaccaaattactatgtggggcaagaggcttaccggaaag
tgctgggctatctggtcctggtggggaggaggaagggtgcttgtgttctcaggcctggatctgaggaagtgggtgcagagatgcaatggcaccatccctg
gctg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1281 chr15 91316802 91317104 RIP_Alu_chr15_091_01 0 + pAlu15-91102932|Ya5ac2458 TCCCCAACCTTCCTACACTG GGTAGCCTAAAGGCATGCAA SINE Alu Ya5 ctttaagatgatttttaaaatatggatttgtagagattagggaagattaaaatttgtgtttcaacataattattggaatgtcttttaaatcttcagtccc
tcataaggagcagtgggaagttgattttattagacaaactgttgacaagacttcgagaaagggggaatcgagtgcttatcttctctcagatggtgagaat
gttggatatcctggctgaatacctaactattaaacactatcctttccaggtaaggtgatttcagtaattgctgtggggggaatcaatctctctctccgcc
tcccctccccaaccttcctacactgggttgtatgctttgcttgttaaagtaggaagtaagagttttcttgtttcaaagaagttaaggttAAGATTCCAGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGATTCCAGGagggtcttaatttttacttgcatgcctttaggctaccatatgaaagtggtcatgaggagacgattctttttttgaaggtgggtgggg
aggattagagaaagtcaaacggggcaagataaaaaaaggatgtcagatggcatcttattgcatgtgtatggtgaaagtagagaggaagtaagtgtgagct
caattccaggagcccaaatcctagaaggagagggcagtatcagacattccccccaaaagttgaccctggctgtgaggctgggaacatagcagaacactgc
tacttaaaaccttgctactccctgaagtaagtgatgatggcttcccctattttctgtggagttccttaactggagttactgtcttcacacagttatctcc
ta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 445 132 NA intron
1337 chr15 98628513 98628514 RIP_Alu_chr15_098_01 0 - pAlu15-98403706 NA NA SINE Alu Yc1 gtggaagcaacccaaagtgtccacagatggatgagtaggtaaataaatatagcgtataggtataatggaatattattcagccttaaaaaggaaaacaatt
ctgacacatgctgtaacatagatgagccgtgaagacattatgctacgtgaaataagccagtcaccaaagaacaaatactgtgattccacttacgtagggt
agtgaattcacagagacggaaagtcgaatagcgctggccagatggctgagagggaggagggaatgaagagttgtctaatgggtacagagtttcagcttta
caagatgaagaaagttttggggataggtagtagtgatagtgtataacagtgtgaatatatttaatgccacttaattgtaagcttaaaAATGTTTAAAATG
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAATG
TTTAAAATGGgtaaaattttatgttatgcatattttaccacaatttttaaaaacatcctacatatcacctgccttttcagtatccataagctcatcaagg
taggactatgtctacaccatcaacattttgtcagtgcctggtacgcatgcaggagatgatccagaaatatttgtgtagtcagtgaatgcataaatgaatg
actgatgccatataccagcatcctttgcgaaggattcagtgctgaagtcacagaaacaaacactggctttacttttttaattcctaggcaaatttgcttc
tggagagccttttgtattctaagcacatcccacggatatggtgtattaaactctgtttgaaagtgtttatgcataaatataataatacacttacact Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1337 chr15 98630340 98630341 RIP_Alu_chr15_098_02 0 + pAlu15-98405546 NA NA SINE Alu Ya5 tagaatggatttctctatctctgcaaaaaagtcattgggattttgatagaaattgcattgaatctgtaaactgctttggataacattgatatcttaacaa
taagccttccactccatgaacatgatggctttccatttatgtcttctttaatttccttcattgatgttttacagctttccatgtaaaactctatccctta
tttggttaattcctaagtattttattctttttgatgctgctgaagacagaactgttttcttaattgtcttttcagattattgttagcatatagaaatgca
actgatttttgtggttggtttagtacgtggctactttgcaaagaatttattagcattctctctgtctctctctctgtgtgtgtAAGATTTAGGGTTTTCT
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTATAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAGATTCAGGGTTTTCTacatgtaataaatatgtcatctgtgaacagagatcattttactacttcttttcttatttggaggccttcaatttctttttct
tgcctaactgctctagctagaacttccagtgttatgttgaacagaagtagcaaaagcaggcactcttgccttgttccagattttaaagaaaaagctttca
gtctttcaccacggagtgtattattagctgtgagtttttcatatatgacctttataatgttgaggtagtttccttctattcctagtctattgagtgcttt
tatcatgaaaggctgctcaattttatcaaattcttttcctgtataaattgggatgatcattttctcttttcattttgttaatcaagtatatcactttttt
t Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1342 chr15 99270604 99270899 RIP_Alu_chr15_099_01 0 + 5167 NA NA SINE Alu Yc2 ctagtttgtcatttgggagtttttaatggagtctctgctctacaaaaatagaatttagcattctgtttatggcttttatgttttgtgttttatttaggaa
agattataaaataattcacttattttcatgggttctggaactatttgttttaggaaatgacctaaaaatctcaatggcacctaccattcattttctgcct
aacacatagtaggggctctacatgattatctgtaattgttataattacaaggaggtgatggttttcctatttgatagttgatgaagttgaggctcaggga
aggcaaagaacttacctaagcaacatagttctaagccagtggttctccaacttgagtatgcatcagaatcacttggaggacttgttAAAATACAGATGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGCAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAT
ACAGATGTCtgggccccaccatagagtttctgattcagtaagtttattagtcttttattgctcctgcaagaagttaccataacatcagtggcttaaataa
cataaatctattatcttatagttctgtaggataaaaatctgacacaggtctccctgagctaaaatcaagggcttcattcctttttggaggttctcaggag
agaatctacttccttgccttttccatcctctagaggctgctcgcattcctaggctggtggccccatcctccatcttcaaagccagcactgctgctctctg
aacctgtttctataatctcattttgctctgcctctcttcttctgccagttttggggacccttgtgattacactgggtctgcctggatgatccagg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1349 chr15 100150065 100150368 RIP_Alu_chr15_100_01 0 + pAlu15-99925171 NA NA SINE Alu Ya4 acactgaagcttcctaacaaacagaaagaaatcttacactcttgcttgttagtatttaatacatgcattatgtgctttttaattttttggtcctactaag
gagtagctgatagcgctgttttgaaggcatatctactgtgcctctgactagcaataggaaaccggttaagttattcaacctctctacatttcagtttcag
gaaatgaagtggacaaagaagatcatcattaggcaatatgtacctccaatattctgtattatgtggagatatcaagtccgtatgtgattacacaaatcat
agtccaaaagagttcagaatgagacatatagaattgaaagtcctatttatacagatactggttaaagcccagggattagatgggtttAAAATGCTTTACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATGCTTTACCtctatatagaaaggagtacaggaccaggaaagggcccaggggcataccatgattgagccgaggagacagtaagagagtttcagt
gacaaaggagatgcaaggagacgatggggtttctgaaaccaggagaagaaagccttcatcatagaagcaagtgataaacttcactgaacacttctaagac
atttcggacaagaatagaagagcgacctttggatttcactgcacgtagcttaacaaacgttcataaaggcagtgaaaacggaagctcggttagggtggtc
ttaggagagaatccaggtgatgacgtagagaatgcgactatagatggctctctctagaagttttacttttaagggtagcagagaactagagtagagctgc
aga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
591 chr16 816642 816958 RIP_Alu_chr16_000_01 0 - Yc1RG123 CACACACACACACAAAATTAGCC GTGAGTCTTGAAACGGCTTTTAC SINE Alu Yc1 gaggtgcttcagaaaacagacgcgaagccaggtctgaggcctggaagcgacggggtcaggcaggtggggagagcaccaggtctgaggcctggaagcgacc
tcaggaagtcacccggaaggcaggtggggagaagtcttcacacctggcctgagagccacatcctcagtgtttatgagcagaggtggagccagggccaggt
ctcccaaaaccacctcacacacgtgcacaggtacacgtgctaccacgcacagacacacgtggacacgcacagacacacagagacacgtgtgcgcaccctc
cgctccccgaaggcacagccgctcctcagagaacctccctcctcggcctggtgagtcttgaaacggcttttacattttttagtttAAAACTCACATTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
CAAAACAAAAAAAAAAAAAACTCACATTTCCccgaccctcttattctttttgtgagacggagtctcgctctgtcgcccaggctggagtgtagtggttgat
tttggctccctacaacctctgcttcccgggttaagcaattctcctgcctcagcctcccaagcagctgggactacaggtgccaccaccacgcccggctaat
tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttactagagatggggtttccccacgttggccagggtggcctcaaactcctgacctca
ggtgatctacctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgctcccgggccgacatctgtttttaaaattcaccatccacaggca
cagtggcgaccacagc UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 563 234 NA intergenic
600 chr16 2042235 2042236 RIP_Alu_chr16_002_01 0 + Yb8NBC230 CAAAATGGCCGTGTTCTTTT GTGTCCACGGATCTTTGCAG SINE Alu Yb8 gtggatggatcacctgaggtgaggagttcgagacccgcctggccaatgtggcaaaaccctgtttctactaaagatacaaaaattagctgggcatggtgtc
gggcacctgtaatcccagctacttgggaggctgagggaggagaatcgcttaaactcaggaggcagaggttgtggtgagctgagattgtgccattgcactg
cagcctgggcaacagagcaagactgtctcagaaaacaaaaaaaagaacaagcgtcctgcatcctgttctgaaagttgtttgtgtgggtacggggcagcct
gtgagtggataaataggcctccgaggctgggatggtcccgggccctgtgtccacggatctttgcagctcaggttgcaacggtAAGAGTATTGTCAATGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAGTATTGTCAATGAGacaaaggaggtgagagtgccagtggttgggatgttggtcagatgacatctaaaagaacacggccat
tttgttattatttggttagagacaaggtctcactctgtcacccaggccggggtgcagtgtcacaatcatggctcactacagcctcaacctgccaggctca
cgtgatcctcctactttagcctctcaagtagctgggactacaggcatgcagcaccacgcctggctaagttttgtattttttgtcgtgacagggtctcact
gtgttgcccaggctagtctgaaactcctgggctgacgtgaccctctcccctctgccacccgaagtgctgagattacaggtgtgagccaccgcacttggcc
ggaacacggccatttt Other - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 62 458 124 NA intron
675 chr16 11909837 11910148 RIP_Alu_chr16_011_01 0 + pAlu16-11968670 NA NA SINE Alu Ya5 aaaaatacaaaaattagctggggatggtggtgcacacgtgtaatcccagctacctgggaggctgaggcaggagaatcgcttgaaccaggaaggcagaggt
tgcagtgagccaagatcgtgccagtgcactccagcctgggcgacatagagagattcatctcaaaaacaaaaaagaaacaaaaaaccatttaaataacatt
taaaatacacaaaccaaaaccatttcagataccctcaaaaaagtacaaaaataacagaaacagccgggtgcggtggctcacacctgtaatcccagcactt
tgggaggccgaggtgggtggctcacttgaggtcagtagccaccaagaccatcctggccaacatggtgaaaccctgtctctactaaaAATACAAAAATTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGCGGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATACAAAAATTAGccaggcatggcggtgcgcacctgtcatcccagctactcaggagactgaggcaggagaatcgcttgaacccgggag
gtggaggttgcagtgagccgagatcacgccattgcactgcagccggggcaacaaagggagactccatgtcaaaaataaaaaaataaccgaaacatttttc
tgctaccaaaattaaccacctaaaggcaatggacaagtagtatggtaacatactggagttctacagaaatattcaaccaggaaattacccagtgacattc
tgcagaatgcgctttttttttttcaagtgaagcgacatacaattacctagtgggaatgtggtttggaagtgagtgtcaccactgttaggtcaggtgctcg
ggaaagcctta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
702 chr16 15400475 15400476 RIP_Alu_chr16_015_02 0 - Ya8-MLS32 TACAGACGATTCTTACATGACCCAG CTTGGGGAACCAGAGTCGTAAC SINE Alu Ya8 cccaggaggtcgaggctgcaatgagctgtgatcacatcactgcacttcagcctggggaatagagtgagaccctgtctcagaaaaagaaaaggaaaaaagt
aacaataaattcaggtagcaaggcaaagctctcctattttaggaaggttgtaaaactgagagtactttaaaaattctttccaatccctgattaggaggga
gggaatataagagctttattagttaattacagacgattcttacatgacccagcaaaatattggtaatactgtgttccacttacccagcattaattaaatg
ctatgtagtttacgtgcctcatttcatgtgcccctccttacaattcgctaaggtgggtagagttacaaaggaggaaaagagcttAGAGAGGTTAATAGCG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAGAGGTTAATAGCGgacagagttcaacccaggtgtctgattcccaagccagagttgttaatctgttacgactctggttccc
caaggtagccccagcacaaagatcaattgattcctgcaatttccatgtaaagccttacgcaaacctccactctatccccttccacttcccctttcattga
aatgtgaggtaagggaaactgaaccagaaaaactgaaaaccggccaggtgaggtggctcacacctgtaatcccagcactttgggagaccgaggtgggcaa
gtcacttgaggtcaggagttcgagaccagcctggccaacttggcgaaaccccgtctctactaaaaacacaaaaattagccaggcgtggtggcgggcacct
gtaatcccagctactca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
705 chr16 15822992 15823311 RIP_Alu_chr16_015_01 0 + Yb8AC1737 GTGCTTAGTGGGACCTCAGC CCTGCCATTACCTCCAAAGA SINE Alu Yb8 atactatctacagtgaaactttggtctctgttttaagtgatctttttctggaacgaattatcttcagatagtaaaaatttccttcatttcatgccattta
gttcagttagtgtaatgaaaggtcacgtaacaaaatgttaatggtgatgagttttggatgatagaatcataggtgccagcaagttctcttttacttaaat
atatgtttaagtttttctagaatgaatatacaatattaaagactttttcaagttacaaataaattttttcagagcactgtagaaatgcttacccatctgt
cgctccccctccttctcctttgctaacagaattttctttctttttggtatttagattaaaatgtgcttagtgggacctcagctccagaaaagaaCCAGGA
ATTGCTGGGTATGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAGACAGATACCTGACTCCAGGAgccatcactttacaacctgagattacagctccaagattgcctttgcaaggctccacctgctggtctttggaggta
atggcaggccctgcctagaagggccaagattctggtcctacctgtggagtctggctcactgtcagaaagttggggcacttatacctgagtccctctatct
tgggggcggggtcgtggcatctctcaggcacacctggattccggcctcaagaacttccagaattgggctcctctcaactcccaactcagatccctgggtt
cccacctgttggtgccctttcagagggggtgtgagttttcgagtttcttgtactcttcgcctgacctggtacacttgtttgcattaactgcctagtccct
ctgtttgacttgggggtgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 446 136 NA intron
710 chr16 16481311 16481598 RIP_Alu_chr16_016_01 0 - Ya5ac2480 AACCACACCAACCAAATGTGT GCATGTGAATTGACTGCTGAA SINE Alu Ya5 gtcccagctacttggcaggctgagatgggatgatcccttgaatctaggagttaaaggctgcagtgagctacgacttaccactgcactccagcccgggtaa
cagaacaagaggctgtctcaaaataataataataataataataataattattattattattattattattattattataatttcatttaaaagaaaaaga
aaacaagaacccagctttacaactacaaggtaagtcaccagcaactgccatgaggacccattgtctaaaccttttaatgtaaaataaaactacattagaa
accacaccaaccaaatgtgtagcttcttcagcctttccttatttttctaaggttgtacaaaactattgtatttacaaaaatggcacAAAAGTGAATTCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCGGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGTGAAT
TCAGcagtcaattcacatgcatacttccctcacatcttcaacaacaaaaggtattctaactctaactctacagagcttggcagttttcaggagtactggg
gacggattttgcaggatatatctctgtattagtccattttcatgctgctgataaagacatacctgagactgggcaatttacaaaagaacaggtttattgg
acttacagttccacgtggctgtggaggcctcacaaacatggtggaaggcaaggaggagcaagtcacatctgatgtggatggcagcaggcaaaaagagctt
gtgcagggaaattcccatttttaaaaaccatcagatctcataagactaattcactatcacgagaacagcacgggaaaaacctgtccccat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 421 131 NA intergenic
731 chr16 19137938 19138265 RIP_Alu_chr16_019_02 0 + Yb9NBC30|Yb8NBC243 GAACCCCATCCATTCTCTTACA GTGGCAAAATATTGGCGACT SINE Alu Yb8 gtgaagactgccaggattgggcagagcccctgggatcaaccactgggcagcttgccttggttcctgtaggcgtctctagaatccattcattctgcccaca
ctggccttctctttgttcctttgaacacactgactgagtgatgccgggtttattcctccctccctccatcccagaccttgcacatgttgttccctctgcc
ccatgagtccctatccctctttcctccctcattcctcttcaaacctcgcctctcagagaaaccctaccccatccaccgactgaaagggcagctcccacgc
gaaccccatccattctcttacactgcctaatttgtcttgttttcctttttcatatttattttatgtttttaatgggaatatttcccacatAAAATAATAA
AACAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAA
CAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAtaataataataataaaacaaacacccatgtgtccatctcccagatgtcgtaagtcgccaatat
tttgccacatttgcttacttcaaatcactccctttcaatcaactgcattgaggcggaacttactgtttgttgatttttggcaaatgcacacgtaactgct
accacaatcaagatatagcatattgctatcacccaagaaatgttcttcctttctctcactctgctatatttttcttcctaatacttagcattacctgaaa
tcatctcatttatgtattttttaaaatctgtgtgctatccatcccccccacaggagtgtatgttccataaagtcagggacggttctcactggtgtatcct
tagtcctggtacatagtaaactgtttt UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 60 508 156 NA intron
733 chr16 19413836 19414136 RIP_Alu_chr16_019_01 0 - Ya5-MLS63|Ya5_4532 ATGAAAAGGGCCCTGAAATC TTGCAGATGCCTAGGGAAATA SINE Alu Ya5 ttgcatgccaccgtgcctaattattaaaattttttaagggatggggtctcgctatgttggtcttaaactcctggcctcaagcagtcctcccctcccacct
cagcctcctgagtagctgcgattataaacgcacaaaaaataattgtaacaaaatgtttcattacctactgttttaagtatttaaaaacatagaaacaacc
caaatatccaaatatgtacagaattaaacatcgttcaagatatagtatttagtggtgggctgcgggggagggaagttatgatactatttgtataatatag
cctcacttttgtaataaacaagtaaattaaagtgttggtagatacaggtatgtttgcagatgcctagggaaatagatttgcAAGAATAGACACTGAAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAATAGACACTGAAGTAttcatagtgagatgagatttcagggcccttttcatctcagtgggatctacttctgtattatcggggttgtgaaaaacaagc
gtgcaagttccatgagggcgggggctttgttttgttcaccgtaaccccagcacctagaaaaagtacaggcatgaaaagtgctgaaaaaatgaatattact
tttttttgagacagagtgccactctgtcacctaggctggagtgcagtggcatgattttggctcaccgcaacctccacctcctgggttcaagcaattcttc
tgcctcagcctcccaagtagctggggctacaggtgcgtgccaccacacccagctaacttttgtatttttagtagagacagggtttcaccatattggccag
UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Selective PCR with subtractive hybridization|Candidate screening NA 55 401 80 NA intron
742 chr16 20686058 20686362 RIP_Alu_chr16_020_01 0 + 20638 NA NA SINE Alu Y aaaaatgtttttagtgggcagaatagtgtgtattctgtgctacctgttgtgtaaaattggtggagaaataagaatctatactcataatttgcttgaatgc
acataaagaaaccctgaaaagataagtagaaataataatagtggtttcctgggagtgagagcaaagtgggcagctttgagactagaggtgggaggcagat
atttttttttccctctgtaccttttacagtttttttgagccatttgaagatattatgcgaaaaaaaattaaaaacagagagagacaagtagtgttgatta
cttaacttctttcagttgaaggaaacctgatgctaattctgttaagaggagagcagccaaaagcataggttgtgacttgccagcAAAAAACAGGGACCGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACAGGGACCGGtagttccctctgtacccaatccccaatgccaaacagaatgacattgttagacttaaggtcttaacctgcagggcaactgg
gattcagagtgattttagttctgttcttaagagcagccttttctcctaaagcctgccaagaaatttttgttaattcttcccaggaacataacagacaagg
cccctgctctggtagaacttacatcacagtgcaaagatcagcaaactgtagcccatgggtcaaatccagccctctgcctgtttttgtatagcctttgaac
caagaatggtttttaaattttttaatggttgaaaaaataactaaaagaggaacactaattcatgacacatgaaaattaaatgaaattctagtgtcagtac
cata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
758 chr16 22753518 22753519 RIP_Alu_chr16_022_01 0 + pAlu16-22773455 NA NA SINE Alu Ya5 tagacaaatcatgtgtatacttaatataccattttatactgctattcatatcagtacatatagtagatataatatgctttatattccattttataacttg
caattttatttaacaatgtgatgcagatatctctccatgccaataagtatatctacagaatcattttaaatgctcagaattattttaaatagcatctagt
tggatagatatactattatttatacaatcattaaccaaatcgcctactgatagacatttagattgctcccactttttgctctttaacaatgaaaggacag
cagcaagtatcgtacccaatgattttcctcagaataaatttatttcagaggaattttggggtttgtgggtaaccatgctttAAAAAGTATCCATTTTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGTGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
GTATCCATTTTTTGatacaaattaccaagttttccccacccctatggcaatagagctgaagcatttatacttccctagcacagtctgaaaggactttttt
ccacatccttgtcaacattgactattagcaacctatttatttgctctttgtcaatctaatgcatgaaaactatctccttttaatttgaattttggggtat
ttaaaaatatttattagccatttgcattcattttctgaaatttttggttaattttttccctgttggagatatttctttccatttttaaaagaggatgttt
aatgattaatgctgcttatactggattgactttatcttttagtgttttattacttcagatgtttctagtgagctgaatttggcttggttctacat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
763 chr16 23436054 23436350 RIP_Alu_chr16_023_01 0 - 31594 NA NA SINE Alu Ya5 aaaataaataagtaaataaataaataaataggccaggcgcggtggctcatgcctgtaatcccagcattttgggaggccgaggcaggcagatcacgaggtt
aggaaatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaaacacaaaaaattagctaggtgtggtggcatgcacctcaggggttctga
gggatgagtaggagtttcccaggtagatgggtgttggaaggctattccaaggagagggatgaaaaataaagcttcacaaagttgttcaggactggaccaa
gagtaggagtcaggggagaggtagaagtggctgctgagaaaccaggcagatgtgagatccaaataataaaacccagattcaatAGAAAAAAATTAGCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
AAAAATTAGCTGGgcatggtggcatgtgcctatagtcccacctactagggaggctgaggcaggaggatcacttgagcccaggaagtcaaggctgcagtga
gctgtgattgcaccactgcactccagcctaggcaagagagcaataaatcttaaataagatttattatcgtacttagcaggaagttcattggtaaggtggg
ctgcagggttggttaattacacgtgtggtgacatcagtgaggacccagggtccttctctctctccaccctcctggccacagcatctgcagcagccacagt
tggctgcctgcagcagtcaggcctctgcacttcctccttcatgtcagctggggagagggtggctttctatggctgtctcccaacagcaaggaaact UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
779 chr16 25531064 25531362 RIP_Alu_chr16_025_01 0 - Ya5_531 GCAAACACAGTGCCACAAGT TGGGGATGTGACCCAAGTAT SINE Alu Ya5 ttgatatccaaatatatcaagatttctcaaaaatcaatatgataaaacactaaaatttaatagaaaattgaacaaacaatataaagagacaatgcacaaa
atgaagaaatacaaattaaaagatgtggaaccttaatagtaatcccccaaaatgcaaaataaaacagtgatgtttcatggagtttattattccaatacaa
tagcaatgtttaggcaatacagttgagcatccctaatctgaaaatccaaaatctaaatgttccaaaatctgaaaatttatgagggcaaacacagtgccac
aagtggaaaataccacacctgacctcaagtgatgggtcacagtcaaaatgcagtcaaaatttgatttcattcacaaatttgttagaaaaaaTGTTGTGTA
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAGCCCGGGAGGCGGAGCTT
GCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATG
TTGTGTAaaactaccttcaggctatgcatataagacatatatgaaacataaatgaatttcatgtttatacttgggtcacatccccaagatatctcattat
gtatttgcaaatattctaaaatgtgaaatttgaaatccaaaacacttctagtctgaagcatttcagataatggatactcaacctgtattaagtgcctgtt
gatgagccttttcataagctgttggtagatcaaactggtaatttttccagagggcaattcaatagtaccttcatttaaaaaaaaaggaaaagaaaagagg
gacaggtgcggtggctcacacccataatcccagcactttgggagggtgaggagggcagatcacttgaggtcaggagtttgagaccagccgggccaaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 502 195 NA intergenic
785 chr16 26290911 26291233 RIP_Alu_chr16_026_01 0 + Ya5_464 TTGGTCAATATCGCTCATGG TGGGAGTTAGGAAAAACTTGG SINE Alu Ya5 ggaggggagggaggaaggagacaaaagacaggaagtggggagagagagaggagaggagaggaaagaggggaaaagatgaggaaaggagagagagagaaaa
aataaatagctttttttgtttgtataatctgacatcttgtagacagttttttagagagatcaattctgtccctttgagttttattttaaaaattagagaa
ataggctatttggctagtctgcaagacttgtcatagcctctgggtttactgggcgattggcaggccatagtgtaaataatgacttagaactactggttca
acttctcttcaaaaataaggaactaggatccaaggtgaggcccagtgacatacagtgacttggtcaatatcgctcatgggaaggcagtcAAAGCTGTAGG
TAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGCTGTAGGtaggaccaagtttttcctaactcccagttctcttcatcacatgatagaatcaggagagagctcttct
cctctgtcacccatcagtcacctctgaccttgctatttattcccaagagtcagagaggcagagtgtaccctctgccttcggagatatcaaagtcatcaaa
cctggacaagtgaaagctttggctgaccaggggcaggggaggttgggtgtatctggctgcttacaattcagaagttgacatcagctcagctgcttgcatg
ctgtgctaaatctcaacgtgtatagactgaaaatcacccagttactttgcgaaaacagcagtttaataagattaggaggagttgagaacacttgttacgt
tcaaggcaataaaatgaaaagc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 57 400 67 NA intergenic
787 chr16 26515538 26515866 RIP_Alu_chr16_026_02 0 - pAlu16-26535378|Yb8NBC13 TCTGGGTTTCTCTGGTGGAC CTGGCAAATGCTACCCAAGT SINE Alu Yb8 gaggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtgggtcacaggtcaggagttggagaccagcctgatcaacatg
gtgaaacccagtctctactaaaaatacaaaaattagccaggcgtggttgcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgctt
gaacctgggaggtggaggttgcagtgagccgagatagcaccattgcactccagcctgggtgacagagtgagatcccatctcaaaataaaaaaaaaaaaag
caagtggcgaaacctggcaaatgctacccaagtgatgaatgccaacctcactgaggaagcctggtggctctcatgcagccttggatAAGATGTGAAGAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGTGAAGAGGaagatgcttcagttttgtggtgttcttcccccaaacccaaactccagtctactcatga
gaagtccaccagagaaacccagagtggaggacattctacaaaatacctggccagtatccccactaggacttccagggtcatgaaaaccaaggaaagactg
agaaatggacacatcagaggagactggggagatgctacaactaaatgcaatgtgataccttggatcagatggtggaacagaaagaggacatacatggaaa
gacagatgaaattgtaattaagtccagaatttagttaataataatgtaagaatgttggtttttcagttgtgacaaatttactcaggttatgtgagatgtt
aacaagaggagaaaatggctgggcaaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening|Genome comparison NA 60 510 168 NA intergenic
809 chr16 29472850 29473149 RIP_Alu_chr16_029_01 0 + Yb8NBC430 TGGATCTTCCATTGTCCACTT TCAGAAACCTTCGCTCACG SINE Alu Yb8 atgacacttgaaacaagctgaaatgtgcaaatgagccacgctagtcattcacttaaatccaaaaaaatgggaaacaaaaccatttctcatttatgacaat
tctccaaattaaccctatatttccttttttaaaaaaataaccagaaaaacaataaaatgtgacaaataacttggatcttccattgtccacttcagggtat
tgccactgcaatatattcttaccatatactttcctaccagtacaaactacaaataacttgggtaagtcctgtctgtacttactctacccacctactagta
atttcctctgaaaatatatatttagctaacaagtcacgttcatttacaataaaacatttctctgaattagttttcttgcattattAAAGAAATGGTATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAGAAATGGTATTGatagatggtcactgggggaccactgctcctccccgacagtatttaaataactggtataggctgcaagacttaccagatacctgctg
cgtgagcgaaggtttctgagtatgatctctatgccatccaactaatatatcaactgtatccttgatggaaacaaagagagagggggccaatcattttaag
atattactgccattcacctgtggaccatttcacagcaaaagatcctaaaaggagcatctatgttctacctacttgacattctagaaacttagaaagggga
gaggggcaggaaaataaaagaactacatttctgacaacaatgaaatagtttattttcttcaaatattttaaggtacgaacgtcagaaagaaaaatgcgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 648 334 NA intron
814 chr16 30119158 30119479 RIP_Alu_chr16_030_01 0 + pAlu16-29470755 NA NA SINE Alu Sx gtttccacatgtgaggggcatgaggggggctcaaggaggggagcatcggggagaggagcgcactgggtggaggctgggggtcccagcaggaaatggtgag
acaaagggcgctggctggcagggagacagcacaggcaggccctagagcttcctcagcacagctggactctcctggagaccttcacacaccctgatatctg
ggccccgcgctacgagggtgctttcactggtctgcactatgccccaggccctgggattttgaacagctctgcaggtgactgaaaggtgcggccaggctgg
ggaacgacctggtttcagccccagccccgccactgactgactttgtgagtgcgggcaagtcactcagcctccctaggcctcagtgacttccctgaaagcA
AAAACTCTGCAAAGGGGCAGCTGGGTGCTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTAGACAAATCACTTGAGGCCAGGAGTTCTAGA
CCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAGAAAAAAAAAAATTAGCTGAGCATGGTTGTACATGCTTGTAATCCCAGCTACTTGGGATGC
CGAGGCGGGAGGATTGCTTGAACCCAAGAGGTGGAGTTTGCAGTGAGCTGAGATTGTGCCACACTGCACTCCAGCTTGGGTGAGAGTGAGACTCCATCTC
AAAAAAAAAAAAAAAAAGAGAGgaatcccactttcttgctgttgtgatggtggtaagggaacgggcctggctctggcccctgatgcaggaacatggagct
gatccaggacacctcccgcccgccactggagtacgtgaagggggtcccgctcatcaagtactttgcagaggcactggggcccctgcagagcttccaagcc
cgacctgatgacctgctcatcaacacctaccccaagtctggtaagtgaggagggccacccaccctctcccaggcggcagtccccaccttggtcagcaagg
tcgtgccctcagcctgctcacctcctatctccctccctctccaggcaccacctgggtgagccagatactggacatgatctaccagggcggcgacctagag
aagtgtaaccgggctcccatc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
828 chr16 31892765 31893090 RIP_Alu_chr16_031_02 0 + pAlu16-31982109 NA NA SINE Alu Yb7 gatcaggactgaacacacaggaatcaccatggagtttgtgctgagctgggttttccttgctgctattttaaaagttgatttatggagagctagagagatt
gagtgtgagtggacatgagtgagagaaacagtggatatgtgtggcagtttctgaccttagtgtctctgtgtttgcaggtgtccagtgtgaggtgcagctg
gtggagtctgcgggaggccttggtacagcctcggggggtcccttagactctcctgtgcagcctctgaattcactttcagtaacgcctggatgagctgggt
ccgccaggctccagggaaggggctggagtgggttggccgtattaaaagcaaagctaatggtgggacaacagactacgctgcacctgtgaaaGGCAGATTC
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGGGAGATTCaccatctcaagagatgattcaaaaaacacgctgtatctgcaaatgaacagcctgaaaaccgaggacacggc
cgtgtattactgtaccacagacacagtgaggggaggtcagtgtgagcccagacacaaacctccctgcaggggcgcgcggggcaaccagggggcgctcggg
acccactgaggacgggacaggtcccaggagcaggtgccgggagaggtttcctttctcctcagctggaaaagtcacgtttatcttcgcaggactctggagt
cttctaggctgtgatattttgttacttatatttattatgaactttatcattaatatttaaattttagtaattattaacattctacatattattatatttt
taagtatatactttcaagaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
828 chr16 31968315 31968629 RIP_Alu_chr16_031_01 0 - Yb8NBC10|pAlu16-33001116 CACGACAACACGTTTACCTCA TTTCCTTTCAGGAACGTGGA SINE Alu Yb8 ggaatagtcacgtaggccttaatctggcttagtgaaataatagagcaaagggagcaatcagatatgcatttgacttacatgagcagagaaatgactctgt
ctgtctttggcccacaaggattttacttgtggtcaaattttgaaggaggtctgtagcttttaaaaaccgtagtagctatcattttagtgaaataatggag
gtggatttaccccaaacagttttcagcttgacttcccttgggcttagtgatttggtggtcccaaaggtttattttcctttcaggaacgtggaaatcttga
aagaaatgagttcttgtagagagaaatgaagccatagtgttagctaaactgaggccgaggctgccacatgaaatatagcctattACAAGACAAAGCTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAAAA
AATAAATAAATAAAACAAGACAAAGCTACAaacgtgttggattgcttaaattccagtgtggtaaacgtgttgtcgtgtaaaattctcaggaaccacatac
tgaagggcactgataaagtgaattaaatatggcctgagaaggactccgtaattctgtgtttgagtccttctggacaaactgtaacctacctgaataggtg
gacaagattgaaaagccaacttcagagcatgagcctgtaacaatagcggagtcttggccaattccagcagccatacctcaaccactcatacactcttgag
tgtgcacattttgtttaaataagacaaaaacaacctgtaaccaatccagctgtttctgtacctcacttctgatttctgtacatcatttttctaatctata
aaccttcttccacc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 505 165 NA intron
834 chr16 32708825 32709133 RIP_Alu_chr16_032_02 0 - pAlu16-32798404 NA NA SINE Alu Yc2 aagccactgacttgtagacattaatgagtgcactctacactatgtaaattatatctcaataaatcctttcaaaaatacacagaagagtaaggggttttgg
aatgctgcagctgggaggcagtttgaaatactgaataggcctcatcgagaatgtgaagtttcagtaaagacttgaggaagttgaatgagctgatcaatgg
atatatggagggctatctttccaagccaagaaattaactagagtcttgaccataaggcagcagcatgttggcatgtccagaggacagtgaggtggccagg
accactggtaagatcaagggtgaagatataaaagaattttggcagttaacatgtggcagatgatgatgggcttgcagatcattgtAAGAAATGTTGTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTTTCAAAAAAAAAAAAAACAAAA
CAAAAAAAAAGAAATGTTGTTTTtagtgtacatgaaatggggagacaaatcattatcccattatcaatattttaataaattggatccatgaaccaaatcc
aatgagatcaaatcaattaataataatatgcaaatttgtattaaaattaaaagaattacttgcacatttgagaacaggagagacatgatttttatcagca
ataataaacattattaattttaattgtgatcagctaattgagattaattgcaatacatcatgctttataatgtgactgccaaaaggaaaatatgattgta
atcttatactacatctatcaatgtcttttatacataagagtatagagtaagcccgtagttttcaaagccaacctatgaagcagtgacatcttatgcaagt
ttgctgct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
836 chr16 32960441 32960738 RIP_Alu_chr16_032_01 0 + Ya5ac2487 TTTCAAATGCCTAGTGCAATTACT TGCACACACGCTCACTGATA SINE Alu Ya5 atactgcaggcaataagaacacagtggtaagagtttatgtatgtaaacatacttaaacatagaaaagtatgtaaaaatatgtattctcatgggaccaatt
ttgtatatgtaatccatctctgacagaaatattatgcatgacttgactctatgaaaaaataatacatttttaaaaatggacacatgtatcaaacatatta
ttataaaaataaaaatatttattcagtgtaagaatttgtaatgatcacagcttatatttaagtacagtttcaaatgcctagtgcaattactatttatttc
tttgtgtattttaaacatgtatataataaatatttttcaggttcaacaatatatatcaatcctacaggctcttataaatattagttAAAATCAATTGGTA
GGCAGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACGTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAAACCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAAAA
TCAATTGGTAaattcatgtatatatatgcatacctgtatcagtgagcgtgtgtgcatgtatgtttgtgtaaatgtaattgtatgtgtgtgtaaatgtaat
tggatgcatccttatatttacccttacctacaagatttccaagattcatttatgatctttagattatgggcatttaaagatttaccaaatacaactgtaa
tagtggaaaatatcaagatgttattaaattcaacttgtgcacataattgtttctataaatttatgtttcttgcaaaactggcagtaatgctcatgcacaa
aataattttctaaataaaaaataaaaacgttttctcagtcattaattcttaaaattatttctccccaataattaatgtgaattaattcttaattct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 490 179 NA intergenic
838 chr16 33243047 33243048 RIP_Alu_chr16_033_01 0 + pAlu16-33330708|pAlu16-32335202 NA NA SINE Alu Ya5 tcgctggcttttgaatgccaacaatcatattctttataaggcacagggaagatttttctaaagaacaagtatgtgaacctgaaaagtaatcaccacttgg
tagtgacaatatggatagggtgaagggcgtcaccaagaagcaatgaaaagatacatttgcagttaaatttgaaaaccatgatgtttaatacatatagtaa
taaagaatactttctcctgtttcaaaattattttagaatttaagatagaagctaaaatacctagggataatgatatgactattgaaaattaaaaattaaa
ggacattttgagtattagaagttaagaatgagaacttattacccaatgaacaggggataattcattatgctccatatccattgaattAAAAGACAGGCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATAGAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGACAGGCCCattacctggataatttgaaagtttaattttatttaaaagtcttgtttcattcatcaagctaaaggattagctcccagaaatattctag
gattgcatatccccaactctgtaggaagtatagaaagaatgttataagggccaccacctaaacattattatgtaaataatttagtaccattccatttgcc
tttgtagatttaaaaatgtaaatggctttctcatattaggaaacatcatttttcaaaacccagataaacatagtatattgcaagagaataattattttct
ttattaaaaaagaaatactggatgctaagtccaaaagacataaattattttatactaataactaccaacattttattcattaaaatataaaggtcaaag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
845 chr16 34193929 34194231 RIP_Alu_chr16_034_01 0 + pAlu16-35376640 NA NA SINE Alu Yc2 agcaggtggctacagtgatacaggtttgtgtagcatttctcctaagttctcaaaactttgaaacttctctgccttctttttacaattgtttaaaataaat
tgtgtggttttctaaacattccagtctagacaagacatgccttcagaggatgttttatctttacaagtctctctcgttaatcttgacatgaaatgttacc
ctgatcgtgtggactatattgataaagttctagaaacagcagcggagatattcaataagctcaaccttgaacagtaagttacattttttgtaaaaatctt
cataaagacatttttgtcttagatttgcttttctttctcaattgttttttgaactgctggcatttgtcttgttttaatcatgcattaagaTTGTCATGCT
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCAGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGT
GAAACCCCGTCTTTACTAAAAATACAAAAAAATTAGCCGGGCGTGGGCGCGGGCGCCTGTAGTCCCGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCTGGGAGGCGGAGCTTGCGGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGTGATAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
GGTTGCCATGCTtagcactactaggggcagaaagtggtgaccaattacttgtttttttatattaatgaaattgtggtacctatggaccataggcagtctt
cagggaccagtgcctccaatttggatccctctctgtgtgtcaggggcgtccaatcttttggcttccctgggctgcactgaaagaagcattttcttgggcc
gcacataaaatacactaacactaacaatagctgatgagcttaaaaaaatcgcaaaagctcataatgttttaagaaaattacaaatttgtgttgggccgca
ttcaaagctatcctgggctgcatgcggcctgtgggctgcggtttggacaagcttgctataagtgaatgagtttgttcttaaactggtaaggaaactttgt
ca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
928 chr16 45084505 45084506 RIP_Alu_chr16_045_01 0 + pAlu16-56162982 NA NA SINE Alu Yb7 aaaccgctcaactacatggaaactgaacaacctgctcctgaatgactactgggtacataacaaaatgaaggcagaaataaagatgttctttgaaaccaac
gagaacaaagacccaacataccagaatctctgggacacatttaaggcagtgtgtagagggaaatttatagcactaaatgctcacaagagaaagcaggaaa
aatctaaaactgacaccctgacatcagaattaaaagaactagagaagcaagagcaaacacattcaaaagctaacagaaggcaagaaataactaagatcag
agcagaactgaaggagatagagacacaaaaaacccttcaaaaaaatcagtgaagccaggagctggttttttcaaaagatcaacaaAATTGATAGACTGCT
GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAATTGATAGACTGCTagcaagactaataaagaagaaaagagagaagaatcaaacagatgcagtaaaaaatgataaaggggatatcaccaccgatccc
acagaaatacaaactaccatcagagaatattataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctcgacacatacaccc
tcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggctctgaaattgaggcaataattaatagcttaccaaccaaaaaaagtcc
aagaccagacggattcacagccgaattctaccagaggtacaaggaggagctggtaccattccttctgaaactattccaatcaatagaaaaagagggaatc
ctc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
948 chr16 47593589 47593708 RIP_Alu_chr16_047_01 0 + pAlu16-48773173|15362 NA NA SINE Alu Ya5/8 agtgcctgccctcatggagctcccagtctaggccagtaatgttcaatagaatgttctgtggtgatagaaatacttatctgtgatgtccaatatggtagcc
attagccacatgtggctactgaacacttgaattgtggtagtgacaggaagtgtattttcattttaaatagtcacacatgactaatggttactctattgga
tggtagaggtctagaggagaaacatgaaaatgtttagcacagagcctggcatacagtcagtattcaataagtgcatctttcctttccctccctccactat
gtggcacctggtaccatgtttgttaactcctctgctgctgttacatgttcttaaggatgagtaaggtcatctcaaacagactctAGAAAGATAGGCCTCA
CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAGATAGGCCTCAgtgtggattatttatatgtgtcttccaggattttgcacacagtaagtgctctttaaatgcctatt
aaagagacaatatggtgtaagaaagggaacatgctttggcactaagaagaaataaatttatatcttggctccatcactcagccgctgcacaacctgaaca
agttactcaagctgtctgggtctcagctttctctctgttcaatggggtgatgatgggctactctgtgggggtagttgtgaaaacagatgaactcatgcat
gaaaagaacccagcatggatccttacacaaagctgctctccaaacaggagaaagccaaccagaagacaaatgatgatgcttctttggatgttcccagctt
cacagatgtgggccctgta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
970 chr16 50561907 50562238 RIP_Alu_chr16_050_01 0 - Yb8JW813 AGAGATTTCCAGTCTAGGCTTCG GATGGTAAACAGCGTCTTTAAGC SINE Alu Yb8 cttctctcctctccttcacctctgcaatcccatgtgtctttaaagtgagagtcattggccattctttggttactccctaaaataatatcaaaatacaccc
gctctcatcaaaatccaatgagacggcatatgcagcatttgcttaatgcacattaaatgctcgataagttcaatttccttttattccctctaacgggaag
agagtgtctccctctatttctttccttatcggcctggtcagtgggcagccgactttcaaaatctgtttatttgcttagtaaaagtttgaggtaagcaagg
tttgcctgagctattgcatttccctgaaagtctattgagtgtagagatttccagtctaggcttcggatgcagagaggcttgggtttaaaagcCAGCTCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCAGCTCAGtcaggagctgcagaagcttaaagacgctgtttaccatcctttgtgaaacgggaatgatgat
gatgacccatcactcactggagggaatgaatgcaaagtgcctagcacatgtatgcatccaatacatgccacttcccttcccctattaaatatatatttat
tcctttgacttacccctgtgcttttcagcatgtccatttcccatggccttggctactgtgggggaagagggcactcacagggtgttttgccttccatcaa
aaccaacctcccctgctctctttttctaagtatcctgccttctcttctacttgggatgagttaatcagatgaactaaacagagtcagggcgcgctagcca
acaaggttccagaaggtggttaatgtgaaca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 435 98 NA intergenic
1018 chr16 56848420 56848721 RIP_Alu_chr16_056_01 0 - Ya5NBC57 GACGTAAAGAGATGTTGTTAAGTGAAAAAT ACTGTAGGAGGTAAATGGAAAGTCAACAGA SINE Alu Ya5 attagtggggaaataaataggcactcttattatatttctgttattaaaaaaaaaaaaagactttatatttccaagcctgagtattggggggaaaaatgga
aaaaaaaataaagaagatattataaagtcaggtatggtgcctgtagtcccagctgctcaggaggctgaggcaagaggattgttggaggccagaagttcga
ggctgtagtgtgctatgattgcgaccgcgaatagccactgcactccagcctgagcaacgcagtgaggccccatctcttaaaaataaaaaaaaagatgtta
taaaatgaaaatatgtattgacgtaaagagatgttgttaagtgaaaaatacagtttacaaaataacatgatactatttttggaAGAAATTCATATATGCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAAATTCATATATGCAtagaaaattatctaaactgtaggaggtaaatggaaagtcaacagaaattacctctgagtggtaaattgtgaatgttttcaaa
tgttcttttagcttaactgtatttttcaacattctacaacatagattgccttgaaataagaacacacacacacacatattactataaaaaataaaatgga
atggtatctctagccagactgcaaatcatcctagttcagactttttttctgaacaccaagaggcaaaagcattttcactggccggcctcaggctccagcc
ccatcatctccacatggtagaacatcaacccacctgaaatgctactttcaacacattgctctcctactcaagtatcctcagtggggtccagctttctaag
a UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 444 126 NA intron
1047 chr16 60604377 60604695 RIP_Alu_chr16_060_01 0 + Yb8NBC499|238240 GGGGAAATCTCCACATCAAA ACCCCCACAAATGCATACAC SINE Alu Yb9 gttaagataattgaaaaatatattattttttctcattttattaagttttacattttaataaaagcatattaagaaaataaaatgcagaaaattatttttt
aaaactcataatccaaccacatatattggcggaaaaaagattgaatatattgatatatttccttacaggttctcctgtattgctttgcggtatagttact
aatctgaatcaatgtcagaaattaactcctcaattttttttaaggtgggttacctggatatcacatactcattagatataatcatgcatttgggattttt
ttatgattctgtgttgttttcaactggggaaatctccacatcaaaacagtgaatagtggttatagacgtgatttgcattctctttAAATTAACTACTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATTAACTACTTAAatcaagagcattggcaatgtgtatgcatttgtgggggtgaaggtaattgaaaaaatagcggtagaat
gactgaaagtattgaatatgggtgtatgggtgagcaggataatgggcactaatggctcattatttttgtaaatttgaatacatacatctatattcatggt
ttgaagatagatacaaaaatgtttaaatgtattttttcatgttcacacacatattttaacagatatatgccaggcactctgactgtatcacacatatatt
ttaataattattttctatacacattttatatcttgcctttgatatttattaagttgcaaccacactcttatgttataaatcttaattttttaatgacttt
atgctattctgtcacgtg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 58 446 113 NA intron
1073 chr16 64039689 64039690 RIP_Alu_chr16_064_01 0 + 9449 NA NA SINE Alu Yc1 ggataacccaagtcctcaaggctctctcttctctaggaaattaggaaggacatacacatgcatgtagtaaaggcagagcatcccagcatagagtccagag
gagctccgaggagaatggaagcttgtaggggcataggggagctgcttcatattttcaagactctcactgcaatagggaacttaggtaaccaggcttgttc
tcccacaccaaagagaagactggaaactcatggaagtggtgacattcccctaaggcacacattccaggctgagcatttaaatcagttgatacttcttctg
tatcttatttaagactttagtacatgagctcttaggagaccaaaagttattttcagtatcagaaactggtgagtttctaacaaAAAAAAATTGTTTTCTG
GGCCGGGCGCGGTGGCTCACGCCTTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATTGTTTTCTGaaaatagggcttacttctggaaggcaggataatgcacagaacacaccacccctttctccaagatgcccaccatcttaattcaaaa
aactgaatttgtcaccttgcatggaaaaaggaactttgcatatgcaattaagggccttgacatgaataaattatcctgttggacccaatctggttacatg
ggttcttaaaagtggaagatgtttcctggttgtggtcagaaggaaatgtgaccatggaagaagggtcagagggatgcaatgttgctgactttgaagatcg
gaaaaaaaatgaactgtgagccaaaaaatgttagcagcccctagaaacaggaaaaaacaaggacatagattctccccaaatgcctccagaaggaatgc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1073 chr16 64077513 64077821 RIP_Alu_chr16_064_02 0 - Yb9NBC7 CAGTAAATGATGGGAACAACCTTC CTAAATGTCAAGCTATGCCACAGA SINE Alu Yb9 gttttagacatgctaaaacatgttatatcaaaacatcacagcaaccctatagaagaagatgacatgatggctactatctgatgaaagaaagaaggtccag
gcattgctctacagcaaatcaacagtaaatagatccaaaagaggcaaccgtggaatgcactttaatctaagtcaatgcagcacctctcgtctttatgctt
caggtttctgcatacagattactcggagcctgccaaagagtttcatcagtctctcctgtgctttgggtttctaatatgctctaagtcaacactaggattg
tgttgatctgtgttagaagctaagagcttgagcaagctggagtccccattgcagtaaatgatgggaacaaccttcgaacttgccattAATAAACTGAACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAATAAAAAATAAACTGAACTgttcatgtttctgtggcatagcttgacatttaggccgagagtttgtaatgccaataaacagctcaggatgtgatgtgat
atgtgtgtgtgtgtgtgtgtttggctgtcacacaattaaaagcttaactgagaaggctaaagctttcattaaaagccatcgactttcatttatttagtgt
tttggggacctggagagagtacaaatcaagaataggcctccaggggacatctttttagacatgagccaatgatgctagtctaactattggagtacaggca
gccttatttttaggttaagaaaaaaaaaaaaacgaatgaacaaatgtggtcatttgaagaaatcagacatgtgattatttttccttcactacaaaagtat
ctgagaga UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 58 403 83 NA intron
1083 chr16 65380706 65381028 RIP_Alu_chr16_065_01 0 + Yc1NBC35|5511 CCCATTCTCCATGCCGTGAT TGCAAGGCATTGGGGATACA SINE Alu Yc1 caaacatcatgttctcacttatttgtgggatctagaaatcaaaacaattgaactcatggagatagatgattaccagaggctgggaagggtagtggaaagt
ggtgggtatggtaccaaaaaaaaaaaaaaaaaaaaagaaagaatgactaagacttactatttgatagcataacaaaataaccataatcaataataattta
attgtacactttaaaataactaaagagtataattggattgtttgtgtaacataatgaataaatccttcagtggatggaaaccccattctccatgccgtga
ttatgcactgcatgtctgtatcaaaacatctcatgtaccctataaatatatacacctattatatagccacaaaaattaaaaataaattAAAAAAAAATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCagggactatatcttacttatccctgtatccccaatgccttgcacaaagattggttcctaaaaggtg
attttttttttttttttttgagacagggtcttactctgtggtctgtcacccaggttagagtgcagtggcataatctcggcccactgccacctccacctcc
caggctcaagcaatctcccacctcggcctcccaagtagctgggaccacaggtgcacactaccatgcctggctgattatttgtatttttggtagagatggg
gtatcaccatgttgtccaggctggtctcaaactcctgaggtcaagtgatccacctgcctcagcctcccaaagtgctgggattataggcgtgagccaccac
gcctggctgatgaagaaatatt UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening|Trace comparison NA 60 481 162 NA intron
1087 chr16 65811177 65811482 RIP_Alu_chr16_065_02 0 - 18088 NA NA SINE Alu Sp caggagagcatttaaaggattgaatgaggccgggcgtggtggctcacgcctatagtcccagctactcaggagtctgagacaggagaatcacttgaaccag
agaggtggaggttgcagtgattcgagatctagccgctgtactccagcctgggcgacaaagcgagactcagtctcaaaaaaaaatacataaataaaggatt
gaatggatgattaacaatgtcagatcccacaaaaagcccagcaaaatgaagaacaaatattgtccatgagatatgttatccaaggaggccaccaatggct
tcagtgatatttggcatctggaaaaataagccaggtggattgaggagtgaatgagagaagtaggaagtgtagagcgtgacctcgctggcAAGAAATTTCT
TGGCCGGGCGTAGTGGCTCACACCTGTAATCCCAGCGCTTTGGGAGGCCGAGGTGGGCGGATCATCTAAGGTTGGGAGTTTGAGACCAGCCTGACCAGCA
TGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCCAACTACTCGGGAGGCTGAGGCAGGAGAATCGC
TAGAACCCAGGAGGCGGAGGTTGCAGTGAGCCCAGATCGTGCCATTGCACTCCAGCCTGGGCTGGAGCAAAACTCCATCTCAAAAAAAAAAAAAAACAAA
AAAAAAAGAAATTTCTctacagaaagaaggaaataaatagggcaagtcaggcacagtggctcatgcctgtaatcctagaactttgggaggccgagacgag
tggatcacctgaggtcaggagtttgagaccagcctggccaacacggcgaaaccccctctactaaaatacaaaaattagccaggcatggtggtgggttcct
ataatcccagctactctggaggctgaggcaggagaatcacttgaacccaggggtggaggttgcagtgaaccgagattgctctacttcactccagcctggg
caacagagagagactccgtctcaaaaaaaaaaaaaaaagagagagagagagagaaagaaatagggcagaaatgagaagttgagatgggtttgacaaagac
aaagg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1116 chr16 69617818 69617819 RIP_Alu_chr16_069_02 0 + Yc1NBC23 TGCTCAGGTTAGGGATGTTAATGC TTCTGAGCTGCTGGGGGACT SINE Alu Yc1 ctcagcctcccaagtagctgcgattacaggcatgtgccaccacgcctggctaattttgtatttttagtagacacggggtttctccatgttggtcaggctg
gtctcgaactcccgaccacaggtgacccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggccaaatttttgcctttt
atacttaaacatttaaaaatcatgcattaggaattaatatttctttggactcaaaaagcctagatttttataaagcagaaaggatcaaaagtgaatttac
agcatgaataggttatatagaagagtgctcaggttagggatgttaatgcattccagtctcttctcaattatgtagcatgatttagAAGAACATTCGGGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAACATTCGGGGAtgcttttagtaaagcttaagctgagtttagtcccccagcagctcagaattaatgccttcaaaaatatggacaactctt
gataaccacattataaatatgctcttccaacagctgtcagtgtcttgagataagggcctgtgttctattcatctttacatcctcagtgcctagcacagta
tttgtcacatggtatacacacaataaaagttggctgatcacctgaataacagagagaaggaacacattaccttttccacaatgagagataaccccccctt
ttgttgaactgaggatgcgttttacctgaaaatgctctatgaagaaataatctaatgaaataaagtggaatctgtgaccttagagaagctaagcaaggga
ctagctt Other - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 445 120 NA intergenic
1116 chr16 69721878 69722191 RIP_Alu_chr16_069_01 0 - 13768 NA NA SINE Alu Yb8 gcaccctgaacacatatgttatttaaaaagagttatttgacaatactgacaggagttggaactgggacaggaattcagtgatcctaggctcccactcagc
acttatgttgctaaataatttgtctctcacccctggtaataccagtacaatgatgggaatatggtcgtatgtcctgggaggagataaaattcagtctgca
aagttcaggagaaatgtgaacatagctctggtgggggcaatgagtggattggggaaagctgctgttctctcttatcacgatggatattaaaagctagaaa
aagagagaaaaggaggtgccttaaggcatagcttgagcattttgtaagctgacagcttggcgattgcctatggttgacagggggagAAAACCGGTATATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAACCGGTATATAtggagttgccagctttgtcccaggaactgcactagagccttgattacatttaaccctcaacacatctttctga
tggagcagctcctgtggtctctagaaggagaaggcactgaggcttagaggaatcagggaactgccaaagtcacagagctagtaaacagatcacagaatta
gtatgcaaacctagtccctgccggccccaggttctatgctccaggtaactaacagctaagaaagaattaaagctaagcaaatttaaaaggaacaaaattg
tccttgccatgtgaggggcagaatagatgttaaatatttaaaaagcagcctggaaaacaggattacctgaaagaaaatatttgtccagatatacataagg
gctcaggagtaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1129 chr16 71310799 71311098 RIP_Alu_chr16_071_01 0 - 12465|Ya5ac2525 CTGAGAGCTCCACGAGGGTA TCCATGGAAGAAGCAACACA SINE Alu Ya5 ctccagttccttgtctctacactagccatgctggcttcctttctctgtcattcccagtctttcttgtcccagggctttacacatatcggtacctttccct
ggaaggctcctccctccctgctttacttttccttcaaatatcacctcatttatcacttcattaagaaagccttttctgactagatcaaattttcctgtta
caaactcatgttcctttctctcatagaacttattacagtggcaggtttacatttattgtgtcatttttaaattcatgacagactcttcaaatccactgag
agctccacgagggtagggaccatgtctgtttttgattaccactgtattctcaaaaggtagcagaatgaatggaaaaagtaggagtttaacaaacATCTAT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
TCTATgactgaattatgaatgaatgaatgctggggaatggcagccaatggtataataagttaaaagatgtatgttgtgttgcttcttccatggatatcaa
acacccaaattccaaaggttatacacagtgaacaaaaatgaatgacagggattgtaaaaatgtgggaggtataaagtacttcttttaggttgataaaaaa
atactgcccccccaaagaaaaattgttatttgaaaatgatagaattatgagtgttatttgtattatttttgctcagctaaattttctaatattttccata
atagtgtattaatattgtaagcatgttattttttactgcaacataaaatcattctggcttcagtgcagcagaaaaccaaagtacctaggaggggcagca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 499 194 NA intergenic
1131 chr16 71632811 71632812 RIP_Alu_chr16_071_02 0 + pAlu16-72810817 NA NA SINE Alu Ya5 ggccacctttccaaagagtgggcttttttgattcacctttgcttctcccattcactgttgagtccccatttgaaggggattcacaagcagtgctctggtc
ctcagccagaccctgccctgttttattctgtaattatttcctaccttcaaacaaacaatgaggaagaccacacctccctccagttacacatctgggagtc
cgcaccaggatttcctctgtcacccaatttttccactgtctggacaatttttatagtttcaccagcaagggcaaaatatattgacagtcctttcccacaa
ggtgtaaaagttctctgctttccccaaatatacctctggatttcctatctgttgaaggaaaaaccagcttcgactgcctccgttAAAAAAGGGTGTGCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AGGGTGTGCAGGGCggctgaggtgaccctactaccgtcatttctgccattctttacttgaacaacattttttaagtgggcaaaatactatcttatgaaaa
acaaaccaacaggggcccaggtaacacacattcatatagtcagttacacagactgaaagtcttcatcaatgcccatctcaattacgttatcaaataacat
aaggggacactattcaagattccatcagaacagagatggcatttaaaagcagtcgcttgagtagtgacaccaacctcctgccgcacacactgaaatccat
gagcctcttctaaagtgtccaaaagttgacctgacactttaacgctgatgcagatactccacaaaaaaaagcggagctgttaaaagggaagcagaaac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1186 chr16 78774940 78774941 RIP_Alu_chr16_078_01 0 + Ya5-MLS16 TTTCAATTTCCAGCATTATTTCC CAGCAATTCCATATTCCGCTAT SINE Alu Ya5 aacagcatggggattcttcacacattacatactactaatccaaattaaatacagaactaccacatgatccagcaattccatattccgctatgggtataca
tccaaaagaaacgaaatcaatatctcaaagagatgtctatactcccatattcgtagcagcattattcacaatagtcatgatatacaattaacataaatat
ccatcaactgatgaatgaagaaaatgtggtatatatgtacaatggaatagtgtccagccttaaaaaaaaaaagaaaatcctgtaatttgcaacaacatga
atgaacctggaggatattatgcttagtgaaatacaccaggcacaaaagacaaatgctgcgtgatctcacttataggtggtatcttAAGAAGTCAAATTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAGAAGTCAAATTCAcagaagcagagaacaacagaatgatggttgcctgggactgggggcaaaaggggggaggatgaggagaagttggttaaa
gtctacaagatatcagctcaacagtaggaataagcactgaacatctattgtacaacatgactactatagttaataataacataccgtatacttaaaatca
ctaagaaagtcaatcttaaatattctcactaccaaaaataataaggatgtgagctgatggacatgtgaagtagcttgatttaatcagtttgcaatccata
catatatccaaacattactataaatatacactattttatttgtcaattagaccttaataaagctgggggaaataatgctggaaattgaaattttaaaatt
taatttc Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
1198 chr16 80403154 80403459 RIP_Alu_chr16_080_02 0 - pAlu16-81584455 NA NA SINE Alu Yb3a2 ggcatgggcaaagacttcatgactaaaacaccaaaagcaatggcaaaattaacaaatgggatctaattcagctaaagagcttctgcacagcaaaagaaac
tatcatcagagtgagcaggcaacatacagaatggaagaaaaattttgcaatctatccatctgacaaatggctaatatccagaatctacaaagaacttaaa
caaatttacaagaaaaaacaaccccatcaaaaagtggacaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaagaaacgtaggaaa
aaagctcatcatcactggtcattagagaaatgcaaatcaaaactacaatgagataccatctcatgccagttagaatgacgatcattAAAAAGTCAGTAAA
TAAACAACAGGCCGGGTGCGGTGGCTCACGCCTGTAATCTCAGCACTGTGGGAGGCTGAGGCGTGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGG
CTAACACGGTGAAACTTCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCAGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGA
GAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATAGCGCCACTGCAGTCCAGCCTGGGCAAAAGAGCAAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAGTCAGcaacagatgctggagaggatgtagagaaataggaatgcttttacactgttggtaggagtgtaaatcagttcaaccattgtg
gaagacagcgttgcaattcctcgaggatctagcaccagaaataccatttgatccagcaatcctattactgggtataaaccgaaaggattgtaaatcattc
tactataaagacacatgcacacatatgtttattgcggcactattcacaagagcaaagacatggaaccaatccaaatgcccatcgatgatagactggataa
agaaaatgtggcacatatacaccatggaatactatgcaaccataaaaaaggatgagctcatgtcctttgcagggacatggatgaagctggaaaccatcat
tctca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1200 chr16 80721973 80722174 RIP_Alu_chr16_080_01 0 + Yc1RG203|pAlu16-81903593 CACGTGTGTATATATATGTGTGCGTA TGGACACTCTATTCTGCTCCATT SINE Alu Yc1 ggtggggggtgtttgggtcatggaggtggattctctcacgaatagcttggtgctgtccttgtgataatgagaagttatcactctgtgtatatatgtgtat
atatacacatgcgtgtgtatatatgtgtatatatacacatgcgtgtgtatatatacacacatgtatatatatgtatatatgtgtatatatacacacgtgt
ggatatacacgtgtgtatatatatgtgtgcgtatatacacatacacacacacatatatgaaattgtaaattacctagagcactcaaaacaattttgaaaa
gaaaggacaaagttggataaatacactactgtagttcaagacttaatataaagctgcagtcatcaagataggtaaatattagtgtaagAATGGACACATG
TCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGA
GCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAACAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGACA
CATGgataaatggagcagaatagagtgtccagaaataaatccacagcagcgtaatcagtaccaaggataatctgtagggaaaagtgtggtgttttaacca
gtagcaccagagcaactgaacatttgtatgaaaacaaaacaaaacaaaaccaaaccaggaatctcagccctttacttacaccataaacataaataaactc
taaataaagtatagacataaatgtaaaagttaaacctatacactttttagaagaaaactgtcataaccttgaggtgggcaaagataagaaacaaaatata
catcataaaaaatcctgacaaatcaggcttcatcaaattaaaactttctgcctttggagagatagcactgcaattacaaaaaggcaagctat UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Candidate screening|Genome comparison NA 59 524 220 NA intergenic
1203 chr16 81040035 81040348 RIP_Alu_chr16_081_02 0 - Yg6AH55 ATGGCAAGGAATGATATGAG CCTGGAATGTTCTTTCCTTA SINE Alu Yg6 tctataaactctctattggactgtgagtcccacattagatcagcaacatatgagcagcatggttccacccctacctgttcatttcaatcattcattcctt
ccttcattcatttgtttattcaatagatattcactggtcggctcctatatgcaggcattgttctaagtactagacatacagcaggaaaccaaccaaccaa
acaaacaaaacctgtcctaacagagctcacattctctctggaggagatagatagtacacaaatacttgtcatatgtcagatggcaaggaatgatatgagg
aaaggcagggaagatagacagatttctaggaataagtaaggcatggagcatgcaattattaaaatgtggcactggaagtcctcattAAGAAGAGTTAGGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAGAAAAAAAAAA
AAAAAAAAAAAAAAAGAAGAGTTAGGGaggtgtgcaagctatgagattatctaaggaaagaacattccaggcaaaggcagcagtaagcacggctggagca
gggtggacatggggagagaagcaggagttgaggtcagggagttcatggtaagctgaactcatggcctatgcctgtgtctatacaatacctgatacatgga
tgaaagaaagtaaaaacataccattgatggaatgttctcatccctctggttcacgtaaacagatagaaagacaaggcatggtttagcagaagatattacc
aatacgatatacctaacaacttgtattcggaatatattaaaagctctagaaattcaataagaaaagggcaggcagcctaataaagaaatggcaatagact
tgaacaaacactt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 60 492 165 NA intergenic
1206 chr16 81469594 81469595 RIP_Alu_chr16_081_03 0 + PV92 AACTGGGAAAATTTGAAGAAAAGT TGAGTTCTCAACTCCTGTGTGTTAG SINE Alu Ya5 ggctgtggaatcagcctcagaagccagattgtctgagccccaaggaaacgtcaaacccctctccctctccagtagcattccccagtctgtgtcacttaga
cgaaaaggatctcagggtgggtggcaatgctccttcactgaaatctgcagttatctctacccaaggcttacagtaaattttttgcaaattagaaagccct
ttgctctctcagtaaaccctggctttcaagatttttgttttagtaaagtctttagactaaatgttgaatctttcactctctttgctcctaatcatctcta
agacagcaaatgcctctagcaaaaaagaggagacgtcaactgggaaaatttgaagagaaagtcacacagatacatttcagtaaggttgtctctgttactt
nnnnnNNNNNNNNNNnnnnngaggcttacaagaaggaaagaattccctctctaaacacactctaaacacacaggagttgagaacggggagatttattcca
gaaccccttctgtgcgttggggcttctggtagcttgcctttcttggtaacgattttctcagagactgggtagattcgagtggagcctggggcatggttgt
tggtccaatggcgggggttggggagacacaagcagttggcagggaacttacaaatctccaggaggttattgagaataaaaattcagatattgccatcttt
tccatttcaaagcaccaagagtctgtcatcagcaattgtgcctttctaggtgtcacctgaatatctaacattgaggcattgaaagatagatcaggactga
ttttactgagcattttcaaa Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.PMID: 8576959.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Library Screen|Candidate screening precise insertion position unknown TSD unavailable 55 437 122 NA intron
1207 chr16 81561490 81561771 RIP_Alu_chr16_081_01 0 - Yb8NBC146 CTCTTCTCTCCAGGAAACGTC GGAGCTCTGCCTTACACTCAA SINE Alu Yb8 aattaggccagtatgccccagaatggtaaaaggaaaggatataggtggagcacctacagtgtctgctatggattttgcaacctagtctatgtgaaacctt
ttaaacatttatttgtacattcaacaaatattttaaatgtgcctgcactctgagtaagtactgaagcactgggcattggaaggtaaaaaagtgctcttgc
aataattttaataaaatttcaaaggtaaaacaagtcattatagtcattatagttaatactaatgaatgctctaatagggaaataatagaggggactttgg
taaatacagcactggaacttaatctattatgcagatcaaggagctctgccttacactcaaacaggtaaggtttaagctgagcccttAAGAATATGCACTG
GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAG
ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATATGCACTGttcac
aatagcaaagacttgaaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatataccagggaatactatgcagccataaaa
aaggatgagttcctgtcttttgcaggatcacggatgtagctggaaaccaacattctcagcaaactaacacaagaacagaaaaccaaataccacatgttct
cattcctgagtgggaggtgaacgataagaacacaaggaaacagggagggaaacaccacactgtcgatgggtaggggtctaggggagggatagcattagga
gaaatacctaatgtagatgacggattgacagatgcagcaaaccaccatagcacgtgtatacctacgtaagaaacctacaag UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 887 592 NA intron
1212 chr16 82223875 82223876 RIP_Alu_chr16_082_01 0 + pAlu16-83405281 NA NA SINE Alu Yb7 tcagtgtcctcacttacagaatagggattttggtaatgaaggccaccagctccgtgcatgacaaggtgctgaatgctttctgtttattatcacgccgaat
ccttatgatttctttgtgaggtgcattctactagaccctccagttctcagataaggaagctgaaggttagagagctaaggtaatgcacccaggttacagc
aggttatcctcaagttccccacggagtagtgacattttgtcaccattgatgctatattactgataatgatcaatagataggttactggaaaggggtccag
atccagatcccaagagagtgttcttggatctcatgcaagaaagaattcagggcgagtccatagagtaaagtgaaagcaagtttattAAGAAAGTAAAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
TAAATAAAAAAAAAAAAAAAAGAAAGTAAAGGAataaaagaatggctgctctataggcagagcaacagcatgagctgctagttggccatttttatggtta
tctcttgattatatgctaaacaaaaggtggattattcttgggttttccgggaaaggggtgggcagttcccagaactgagagtttctcccccttttagacc
atataggtaacttcctgatgttaccatggcatttgtaaactgtcatggcactggtgggagtgtcttttgacatgctaatgtattataattagcatataat
gagcagtgaaaatgaccagaggtcactcttgttgccgtcttggttttggtaggttttggccagcttctttactgcaacctgttttatcagcaaggtcttc
ctgatctaaatcttgtgct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1236 chr16 85371727 85371728 RIP_Alu_chr16_085_01 0 + 12621 NA NA SINE Alu Yg6 cgttactatcccatttcacagatgagaaaactaaggcccagggaggtaaataacttgctcagggtcttcaagtaggaagcagcagagccgagattccagc
cccaagctggcactcttcagcactgcacagtccgccctctctgcactctggccagcgtcagcatcacctccagggacagtgcatgcaccaggaaggacac
agctttggaaccatctgcgtgaaaatgcgaatgtttaggtttgcattgcaaaccccactgcaaatcagctgtgactttggacaaagcccatcatttctct
aaagccccaacttctacggattgcatccgccttcccttcttcccgacccccacccccagtaattcctgctccaccttcaaacccccGAAAGGGAGTTTGA
GGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG
GTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTG
CACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCNNAAAAAAAAAAAAAAAAAAAAAAAGGAAAGGGAGTTTGAaaaggctgggctcacgtctgtaat
cccagcactttcagaggccaaggagggtggatcacttgaggtcaggagttcaagaccagcctagccaatatggggacaccccatctctactaaaaataca
aaaattagctgtatatggtgacgtgtgcctgtaattccagttactctggaggctgaggcaagagaatttcttgaacccgggaagcggaggttgcagtgag
ctgagattgctccattgcactccagcctaggcatcacagtgagactccgtctctaaacaaataaataaatacaaacaactccctttcaagattagctctc
tgcatttctggtcatcagttattcctactctaataggtgttctggttatctcttggtgtata Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
593 chr17 1177187 1177188 RIP_Alu_chr17_001_01 0 - pAlu17-1180422 NA NA SINE Alu Y cactgtgtgtcaaccatgcagcctttctggagaggaactgggcagaataagctggacatgggcgtgtctttgggcggtgccttcacttctagggatgcag
gttaagctggacatgggcgtgtctttgggcggtggcttcacttctagggatgcaggtattcgctggacagatgtttgttaagctccctggtgccaggccc
agggagttggtcgtgggtgagaccccagagaccccagagcacattcagcagggacaaggcaattgtcatgcaattatctatgcaggaacagggtgagaag
cACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCCAGAAAGAAAAAACAAAAACAGCCACTAATGTCATTCATGAAGGCTCTGCCTGCC
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCTGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGATGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGA
CGGAGCTTGCAGTGAGCAGAGATCGTACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCCAGAAAGAAAAAACAAAAACAGCCACTAAT
GTCATTCATGAAGGCTCTGCCTGCCcatatgaatttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggtacgatctctgc
tcactgcaagctccgtctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccatcacgacgcccggctaattttt
tgtatttttagtagagacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccgccctcctcggcctcccaaagtgctgggat
tacaggcgtgagccaccgcgcccagc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
626 chr17 5405475 5405786 RIP_Alu_chr17_005_01 0 - pAlu17-5409430 NA NA SINE Alu Yb7 caggtgtggcccatctggctaccacaggcagaggtggttggagtcacccaccctgccatctgggtgtttccctgggcagtaacaggaggctgcacccctc
agccggattcagacagaattaggaccactgcgctggaagctctagcagacatggcctgcatggctaggagaggcggtggtgggtggagtcacccaccctg
ccttcagagtgtttctcggggaaccgggagtttgcctctgctggctgagttcagacagaagcagactgctagcagacattgcccgcctggctaccagtgg
cagggatgggcagagtcaccccctctgctgtccaagtggggaacctgaacaaaataatatcccaaagaacagtttcatggcaagtatAAAAACCACATGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAACCACATGGcatgctttttgatctatcaagagcaaaggtaggaaaacttgtttgagtaaaagacaagatagtaggctgggtgcag
tggcccatgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgtgaggtcaggagtttgagaccagcatggccaacatggtgaaacccca
tctctacaaaaatacaaaaattagctggcgtgatggcgggtacttataatcccagctactctgggggctgaggcaggagaatcgcttgaccctgggaggc
ggaggttgcggtgagccgagatcgtgccactgcactccagcctgggtgacaagagagaaactctgcctcaaaaaaataaataaaataaaatgaaattcac
ctaaggagaga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
633 chr17 6363099 6363414 RIP_Alu_chr17_006_01 0 + Yb7AD84 ATCCAGCCTTGTTTACAAAT GAGTAAATGCTGGCAAAAAT SINE Alu Yb7 tagaactgattaataaaagtaagagctatttctttgaaaagaccatcgaaataggtaagcctttggcaaaacttactaagaatgagagagaaagagaaag
atggagggatggggaaaaacacaaatgaacaatgaggggaatgagaaagaagtcataactttcggaagttaattgttttcaacttgatgaagggcatttc
tggaatcctagggcgagggccatgtttgttggtaaaacattggaacgtttccatcacagcactacagtcaggatccaaccagaaagcccgctaccgcttg
tcactctgcattgacctggagatcccatgcaatgcagtttaaaaggaaaaataagaaaggagagtaaatgctggcaaaaatataactgttaagatttgta
GGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCGTCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAttagctgagcgtggtggcgggcagctgtagtcccagctactgggggactgaggcaggagaatgacgtgaacctgggaggcggggc
ttgcagtgagccgagatagcgccactgcactccagcctgggcgacagagtgagactccgtctcagaaaaaaaaaaaaaagatttgtaaacaaggctggat
gcagtggctcacacctgtaatcctagcactttgggaggccaagtcgggcagatcacttgaggtcaggagttcgacaccagcctggccaacatggtgaaac
cccatctctactaaaaatataaaaagtagccaggcatggtggcgggcgcctgtaatcctggctattcgggaggctgaggtaggagaatcacttgaaccca
ggaggcagaggttgc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 0 0 NA intron
79 chr17 6815460 6815758 RIP_Alu_chr17_006_02 0 + pAlu17-6819420 NA NA SINE Alu Ye5 aaaacaatgggagagacagacaacattataccttcaggaagaaataatttgagtgacagcagatttctcatcagcaatcacagaggccacaaggaagtag
aacagccttttttaaatacagtcacacatcacttaaccacagggatacattctgagatgtacatcactctgagaaatgcatcactagccaatttcagtgt
tgtgcatacatcatggagtgcacttaaacctagacggtataacccactacacacctagactatatagtatagtccattgctcaaacaacctgcacaacac
gttactatactgaatattgtaggcaactgcaacacaattgtaagtatttgtgtatctcaacacagaaaatgtacagtaaaagtatggtattaaagaTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTCGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCGGAGCCTGCAGTGAGCCGGGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGGTT
CAaaatggcatacctgtacagggcactgaccatgaatggaacttgcagaactggaagttgctgcagatgggtcagtgagtgagtggtgagggaacgtgaa
gacccagggcattgctggacactcctgtagactttataaacattgtacatctcccctacactaaatttatctttaaaaacttcttttggccaggcacggt
ggctcacaccgtaatcccagcactttgggagcccaaggcgggcagatcatgaggtcaggagctcgagaccaacctgactaacatgctgaaaccccgtctc
tactaaaaatacaaaatgtagccaggcgtggtggtgcccgcctgtaatcccagctactcagaggctgaggcaggagaatcacttgaacccgggaggcg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
662 chr17 10144159 10144496 RIP_Alu_chr17_010_01 0 + pAlu17-10146390 NA NA SINE Alu Yb7 ttatttcacttagcataatgtcccccaagttcacctatgttgtcacaaattgcaggatttccttcttttttatggcccaatagtattcccaatagtatat
gaatatatatattcaaatttgcatatatatgtacatttgcatatatatgcacattgtggtgatatatacatatatacgagatatatacatatatatacgt
atatatggatatatacgtgtatatatatacatatatacgagatatatacgtgtatatatatatacatatatatgtatatacacattttctttatccattt
atccattgatggacatttagtttgtttccacattgtggctattgtgaagagtgatgcaataaacatggaagtgtagatatctcttcAAGATCCTGATTCA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTCCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATCCTGATTCAatttcctttggatatatgcccagtagtgggatggctggatcatatggta
gttccatttttaagtttttgaaaaactgctattaggttgtaccaatttgcattcccaccagcagtgcacaagagttcccttttctccacgtcctcaccaa
cacttttgtctttctgataatagctattctgagagatgtagagtgatatagggtctttatttttaaatgtttgtggaagctagtgatttacctggccatg
ggttggatttccatgttttctacttggagcaaagatcctccactttcacattccttattttatatttacgatagagcagcaagaatctaaatatcagctt
catagaagaggaatggaccatgataataaacacagca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
677 chr17 12137317 12137621 RIP_Alu_chr17_012_01 0 + pAlu17-12139548|Ya5NBC160|3797 CTCAGCTGTGCCTGATACTCTATAA GCCTACTGGATAAGTCACACATTTT SINE Alu Ya5 tttcactgtgttaggcaggttggtctcaatctcctgacctcatgatccacccgcctcggcctctgaaagtgctgggattacaggcgtgagccactgtgcc
tggccctccaattttattaataaattatcacccaggcagcgtcttaggcaattttctggttgtccatgagacactctttaagctcagaattttaggccat
aaaatatagttcaaacgatgctataaagagttaagagagtttccaaagaatgttgggtagaccttgagaaactatttagctcaggcgtgcaatgtttgtg
tgacttctcttgctcagctgtgcctgatactctataaatatgccttatttatcttcttcatattttcattatttaatgttcttctttAAACATACTTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAACAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCGGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAA
AAAAAAACATACTTTTGgggctcctatattgcccagttacagctctttttaagtttttatgttccaatataacttaaaatgatttcagggcctttggtaa
tcaatagtgttatcaaattggggggataatatatcaaaaatgtgtgacttatccagtaggccaagtattgaagcatgggcttccatgggacagcagttat
tagcccatcaggagggaaaagccattgtaactttccttatgcttagggaatcctgagtctcatcttcccttatgcctgtcctactagaattctatggttt
atatcataatcttcctcaagaagattgggtctttttgctcaaatttctaaaatttgaaaacttaacatccataggactgttttttaaacgtgaggatttt
gatt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 55 551 234 NA intergenic
685 chr17 13161223 13161529 RIP_Alu_chr17_013_01 0 - Ya5_454 AAGCCTAGGACACACGCATAA TGCTTGGCACTTAGTGTTAGGA SINE Alu Ya5 aaacaacttctgcttgcaaaaatggacccactgtccacattttttgaaagcagcacaggtaaagaacaaagccttaagctttcactccatcgagtcaaag
ttcctagcagtctaagtgcagatgcattataatttgtgggttttgttgtttgtttctagaggatccctccagaaaatcttctttatcttcttcatgacta
aacttccacagggcctgtcttgtgtctcataagcagcttccatctttctccataaacacctcttgtattttcaaacataatggcgcatctcccacgaaaa
actgaaagacaaatagggatatgtaagaagaaatgcttggcacttagtgttaggattttcaacactaagttgttcatgtAAAGATTCTGTCTTTACCCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAAAAAAGATTCTGTCTTTACCCTTtcattatgcgtgtgtcctaggcttttcaagtgaacatcagcatacaagttatttgcttagaacagagctgtaa
gagtaaaatgcatgaacacagtcgaagcatctggttgggaccatggccacctgtcagcattggatgctccctttggtgtgtttcagtgaaaatgaataaa
ccgcatttccttttaagccactgcattgagttgggtctactttttatagcagtctagtcttaccctagcaaatacattctctcagctcaatgtatattca
tgtgttgcttaacaacaaggatatgttctgagaaatgtatcctgaggcaatttcttcattgtgcatagcctactggtactaggctgtgcacaatggtcta
acctat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 59 418 91 NA intergenic
689 chr17 13645285 13645574 RIP_Alu_chr17_013_02 0 - 79694 CTGCTCTCAACCATTTTTATCCTCTAC CATGAACTTGAGTGTTGATTCAGGC SINE Alu Y agagctgacttgaacccaaattttctggtgtacattatgaactgaattctgattcagttcaacatgcattgaccccactgtatactaagctctagaaata
aaatatgagtaagtttcagatctttaaatgcagcctatgagaaaaaacaggtactttctataataaattgaaccatatgaccaattgctgtttttgtggg
ccaaaaatgtcgaatattggttatttcatttgatttaatcaaataatatgtaagtactatgatagcggtatattgataagttactttgttgttttcctta
tatctggaatttctgctgctctcaaccatttttatcctctactttctgaagcagttggccttgacagaggtggctaaatgtctaAAGAATACATATATGC
AAGAATACATATATGCTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTG
CAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATACATA
TATGCacgctggatgactgacgaccctagcaatccacacagacttctttcttgcctgaatcaacactcaagttcatgtctaatacagcatttcttcttgg
cctgtaaatacagggaatcaatggctaatgagcaacttcatacaggatctctgaggttgtacataataagttggactaccccagacctaaggtacatggt
atttcgagacgtcaaggactgcagagttctgatggcttaaagagttaggaaaaaccactgatttgccagccaagaggtcatctgtgacctcaagatctgc
agcaatggtgtaagactgataactggcagcaaaataaaacagcagtacatgaaaaagggtggctgtgtaccaagcattgtgtcaaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
694 chr17 14358667 14358668 RIP_Alu_chr17_014_01 0 - Yb7AD3 AAGAAAAACAACCACCTTTG TGTATTCAAGGGCAAGAAAT SINE Alu Yb7 aaactcccatcaatcactgtgaaacacagtccagaatgaagaaacaacttaaaaacaggtgtgaacctagcaaccatctcaaggctgaagcacaggcaat
tttgcaacacctccctatccccaatccagaatgtctttttaatccggtttacaggctggaattctactaaagacgaactcacagtcaaaaattacaaaac
acggaagaaacactccgtcctaaaacttagtcagtagatgagaaaccaaaccataatacacccaaggaagtagaataaatctaaacagaaaattaaatca
atatcttaacgtttgttaaaagaaagataaaatgaagaagtggactttgtattcaagggcaagaaattatcatttgaaaaatagttttAAAAGAAACAAG
TATTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAGtagaaatcttgc
aggtaaaaaaatagtaaatataatttaaagctcaattgagttttatctaatataatataatgtccatgaaggcaaaggtggttgtttttctttttgtctg
ctttgtttattgtttaaaccctaacacttagaacagtacctgatacataatttgcaatcaatatatgtatttttaatggataaataaattagtgggttaa
atggtagattggcagagaaaaattagtgagttagaaaatagaactaaataaaccacacagaaaacataccaagagacaaaaacattaaagaaagaaagaa
agttaagaggcctggacaagagaaagcaatactgtatcacaacattcatctaataaggattccagaataacaaagt Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 0 0 NA intergenic
695 chr17 14468379 14468380 RIP_Alu_chr17_014_04 0 + pAlu17-14470710 NA NA SINE Alu Ya5 gtgatcgtgggtgtgagtgagctgagaaagctcagtttcctttgctcgtcatggcctcttcttttgagcctctcacagcacaacatgataacaacatgac
aggaatatgagataaggagtttgtggaacaaagacacaagctacaagtcacattggattttcaggctaagaacctttattatgcagacaacaaatattcc
ataatgtggcctatactacgtaagtacaaatacaggtgaagcatctttgtatggtacacacttcaatttgatcactctgtctaccctgtgtacaaatgga
atgcactggacttttatttgtcttactgatattggcccattattattcagtctcctgttgtagcaattgtcactatcttcctcttAAAGCTTCCATTTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGCTTCCATTTGCttgtgctgaccgtttcctatcttctctccaattgctaaagctcttatattctttgttgagcaggtgatcaacttaggtgacaaa
ttcacacttctcaccagctcccttaaaactactgacagcaactgatgtctatggagtgacttactgtatctgtcaagagctctgctaggcacttaacata
cattatgtcatttaatcaaaacaatgccttactttaactattattattgttcctgttgcatagacaaaagcccgagactcagtaatactctgtgacttgc
ccaaggtcacagagctaggcagggatggacctgggttcaatgacaggctgtatgacttcaagtcttatactttttgatttgagacactgccttagaacac
t Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
697 chr17 14688275 14688578 RIP_Alu_chr17_014_02 0 - Ya5NBC120 GGACCACATGACTGAGTGTAAAGT GAGGTGGCCTCTTAACCATAATTC SINE Alu Ya5 accatcctgcagtcttggctgagcaccaatttgccagctatgagagtgggccatcttcacagtggatcatctgacccccagtcaagctgctccagcttat
gctgcatgtagactggactagcagtcttcacatagtccttcccaaattgcagtgtcgtgagcaaaataaataattgttgtcttagcctgaagatctgcga
tggtttgctactcagcaatacaaaactgatggaccacatgactgagtgtaaagtatatatttgagcaatgaaaataagatgggtgagtggtattgggccc
aattatggataacccttatgagggaatcagatgtgttctacttggcaatattaattataagagatataccagatggaggaggttAGAAATGACATTAAGA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAATGACATTAAGAgaccagaattatggttaagaggccacctcattaactccagcatgagttgataaagtctagcattaggtctatcatggtaga
aaaaagcagataaggcagttgagacattaaaaattaccaatagtacacattttctgaataaaaatgagctatgaggttgggattaacactgctgagtctt
tcagcttttttttttgagatggagtctcattctgttgccaggctggagtgcagtggcacgatctcggcttactgcaacctccacctcctgggttcaagcg
attctcgtgcctcagcctcccaagtaattgggactacaggtgcatgccaccacgcccagctagcttttttgtatttttagtagagataaagtttcaccat
gtt UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 55 518 199 NA intergenic
698 chr17 14903685 14903992 RIP_Alu_chr17_014_03 0 + Yb8NBC24 AACACTCCACCCAATAACTG CATCTCTTCTTTACCTGTTTCC SINE Alu Yb8 ttagcatacattcaatgacagctttaaaatgcatttgaaaactttaataactgaaaagaaaataaattcataatttctgttggagatttaacattcttca
tttaatagccaggtaagaacaaatagatcaaaaatcagtaaggatataggatacttgaataaaaagattaaccggtgaatcagatagaattggcatttgt
agaacactccacccaataactgcagaatacatatttgtttcaagtacacatgaaatattcactaagataagccattttttggccataaaatgaatctcaa
cagaattaaaagtatttaaataatatagtatattctctgatcacgacaaaattaacttagatattaataactgaaaacgtatctAGAAAATCCACAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGA
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AATAAAAAGAAAATCCACAAATAttcagaaattatacaacacacatataaataatccacctattttaaaagatattaaaaataaaattagaaaaattatt
gaactgaatgaaaataaaaacatagcatatcaaaatttgtaggaaacaggtaaagaagagatgagagggaaacttatgtctttaattgtgtatgttagta
aaatagaaacctctaaaatcaatatcctaaacctctcctttaaaagccacaaaagataaatttaaatttagtaggaagaagaaaataataaagatgaggg
tagatatcagtataatacaaaattttatgaagaggaaatcaaaattggttttttgaagaaatcaatggaattgataaatttctatcaggattaataaaga
aacaaag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 56 661 338 NA intergenic
703 chr17 15471489 15471789 RIP_Alu_chr17_015_01 0 + Yc1RG93 GGGATTCAAGTGTGGGTAGAAT AAAGGAAGGCAATATGATGTGG SINE Alu Yc1 tgcattttattgccttttatacaatgtccatgatctaataaggaaggtggccgggtgcggtggctcacgcctgtaatcccaggactttgggaggccgagg
cgggtggatcacgaggtcaggagatcgagatcattctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccaggcttggtgacgg
gtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactcca
gcctgcgcaacagagcgagactccgtctcaaaaaaaaaaaaaataaaataaaataaaataaaggaaggcaatatgatgtggtggttAAAAGTCCAGTGTC
GGCCGGGGGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGTCCAGTGTCattctacccacacttgaatcccagctctgcccctcactcaccatgtgaccagagtgaccttgaacaaattagctaactgccccgga
ccgcagtttctccatctgcaaaataaggatgatataagcatctacccaatgggtgttctgtgaggactgagttaatgtgcaggaagcataagaacggtat
ctggcacataggaaatacgcaagttagcaatttattatgataactctgcaatcttttcagccactctttaaggttcctggtcatccattctgggcacagt
gtgacatttacctgaacagagaggagaatggcactagaagatgagggagatttggtgcctaaaaattactacaaacaggcagggcgcagtggctcacgca
UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 377 63 NA intergenic
703 chr17 15573201 15573501 RIP_Alu_chr17_015_03 0 + pAlu17-15575433 NA NA SINE Alu Y gcatatcagttacctcagatacttatcttttttttttgtggtgagaacatttaaaatctgctgtctcaaaaatttcaagtattaccacattgttattaac
tgtagtcaacatgttgtacaatagagctcttgagcttttcctcctagctgacatttttagtgacatgcgttgcatttgaacatatgcagttaccatgacc
aagctattttatttgtagggctgtacttaactaaaatatctatacatgtgtaccaaaagaaattaacaagaatgttcatagtggctttattgctagtagt
cccaaaatggaaacaaaccaatgtccatcaacagtagaattgatagatgtgccatattcatgcagagcaccaccgagcagggaaaagaAATGAACTGCTT
GGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGATGGATCACTAGGTCAGGAGATTGAGACCATCCTGGCTAACACA
GTGAAACCTCATCTCTGCTACAAATACAAAAAAATTACCTGGGCATGGTGGCAAGCGCCTGTAAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
TGTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCATCACTGCACTCCAGCCTGGCCGACAGAGCGAAACTCCATCTCAAAAAAAAAAAAAAAA
AATGAACTGCTTcatgaaaccacttgaaggagtgtcacaaatgtaatgctgggccaaagaagccacacacaaaaccattcctactgaatggccctccatg
cttccatttatgaaacagacaacactaattggggctgctaaaaaccaggtgactctttgctttgacaagacaggtgggcagtggttagggagcagacctt
caggagagggatttccagattgttatttttatttcattttcttggactgtgtggtagctccaagcatgtgtcctctttgtgataaatcactgagtagtag
aataataggattcctgtgtatattatactttaataaacatatttgaattcctttttccattaggacaaataatataaatcataataaatctttgcaattt
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA promoter
705 chr17 15804311 15804616 RIP_Alu_chr17_015_02 0 + pAlu17-15806542 NA NA SINE Alu Yc1 gttgttcttttttaaaaaatccaggttctattaaaaggtcatgcttgcatttaatatgttcctttaatctgaaagagttcctcagtcttttgtttgtttt
agtctttcaagacattaacattttcctccgggcacggtggctcacacctgtaatgggagcctgagcaggaggatcatttgaggccagaagttcaagacca
gcctgggcaacacagcgaggccccatctctatgaaaattaagaaaattagtcaaatgtggtggcgcatgcctatagtcctagctattcaggaggctgagg
tgggaggattgcttgagcccaggagttcaaggttacagtgagctattagattggtgcaaaagtaattgtggttttggccattaaaaaAAGGCACAAATTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGGCACAAATTGGgccgggcgcggtggctcatgcctgtaatctcagcactttgggaggcgaaggcaggcagatcatgaggtcaggagatcgaga
ccatcctggctaacacggtgaaaccccgtctctactaaaaacacacacaaaaaaattagccgggcatggtggtgggtgcctgtagtcccagctactcggg
aggctgaggcaggagaatggcgtgagtccaggagacagaggttgcagtgagccgagatcatgccactgcactccagcctgggcgacagagcaagactccg
tctcaaaaaaaaaagtctgggcgcagtagctcacgactataatcccagcactttgggaggccgaggcgggcgattcacgagttcaggagattgagaccat
cctggc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
729 chr17 18961713 18962005 RIP_Alu_chr17_018_01 0 - pAlu17-18902845 NA NA SINE Alu Ya1 agaaaccccatctctactaaaaatacaaaattagccaggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttga
acccgggaggtggaggttgcggtgagctgagatcatgccattacactccagcctgagcaagaagagtgaaactccgtctcaaaaaataaaaatatatatt
tgtggttaggcatggtgactcaggcttacacctgtaatcctagaactttgggaggccgaggtaggaggattgcttgaggccaggagttcaagactagcct
gggcaacatagcaagatcccatctctacagaaaagtaaatttttaaaaattatgacattttgagctgcatgatgaaaaaaatttAAAAAGAAAGAAAGAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGTGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACGCG
GTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCATGCTGGTGGGTGCCTGCAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCG
TGAACCATTCTCCATTCTCGGAGCTTGCAGTGAGCCGAGATTGTGCCATTGTACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCACAAAAAAAAAAAAA
AGAAAGAAAGAAagaaagaaagaaagaaagaaaattggccacgtgtgttagtgcacacctgtagtcccaactagacaggatgctgaggcgggaggatctc
ctgagcccaggagttcaaggctgcagtgagctgtgatcgtgccactgctctccagcctaagatacgggaaaaaccaaagcgtttttcttttctttttttt
ctgctgtcattgtatgaaatagtccataggtttccattatatccagttatagagggtgttactgagttacggattttctgcctgctggatctgtccgttt
ctgatagagggacattgaagtcgccaactataatagtttctccttgcggtgctgtcgctttttccctcacatattttgatgttctcttgttaggat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
733 chr17 19484020 19484317 RIP_Alu_chr17_019_01 0 + Yb8AC1747 TACACGTATGTGAGGTGCCC AGAGGGGACATCCTTGCTTT SINE Alu Yb8 taagccatgtttgtgccactgcactccagccagggtaacagagcaagaccctgttttcccctaaaaagaaaacattgtgctaaggaaaataagccatatg
caggcctattatacaaggacacttgtacaagtacgcaaagacacatcttgtatgattacacgtatgtgaggtgcccagaatagtcaaaatcataaagtat
agaggttattaggggattgaaagagagcaagaggggaattattgtttatgggtacaatttctgtttgggatgatgaaaatgatctaaaagtgaatgatat
tgatggttgcagaacattgtgaatgtacttaatgtcactgaattgtgcaccttaatggttaaaatagtaagttttatttattttatttcAATAATAAAAA
TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA
AAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC
TTGCAGTGAGCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATAAT
AATAAAAAtgcctcacttggatcacaaacatctacaaaattctacagataacatattagtcaaaagaagctgcatgccttcctgctaatattaggaacaa
agcaaggatgtcccctctcaccactcattttcaacatcgtaactgaagttttagctaatgtaataagacaaataaaggaaatgtatacatattaggaaga
aagaaattaagctgcctttgttcacagataacatggttatcaaggtagaacatcccaaataatcaacaaaaaagatttctggaactaataagtgattata
gcatggtatcaggatgaaagttattatacaaagtcaattattttactatacaatagcaatgaacactttggatttgaaattaaaattaaaaacacca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 662 358 NA intergenic
788 chr17 26687733 26687735 RIP_Alu_chr17_026_01 0 + NF1 CAGATCTGCTTGATGTTGTACTAAG TGACAGCAGCTGACTTGACTTTGC SINE Alu Ya5 tctcttaatctctgaaggagtcaaatgaatatactcatcctttcctggatattttataataaattgtatttactgacaggcctgtaaataaaatctagta
tttttgaggcctcaggtaaaatagaattttcatattgattaggctgttccaatgaatattttttaattaaaaattaaattggtagagtgattaaaaacat
gttattttccttcttcaactagattacagatctgcttgatgttgtactagacagtttcatcaaaaccagtgcaacaggtggcttgggatcaataaaagct
gaggtgatggcagatactgctgtagctttggcttctggaaatgtgaaattggtttcaagcaaggtaatcacttttcttttgccttctgtactatagcata
tctgttttatcatcaggaggttttttgttttgtaattacttttaaattaaactgaacttttttgtgctaaaactttgagtnnnnnGGCCGGGCGCGGTGG
CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT
ACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG
GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAnnnnncccatgtttttttttttaaaaaaaaaaaatcctgcttctttacaggttattggaaggatgtgcaaaataattgacaagacatgcttat
ctccaactcctactttagaacaacatcttatgtgggatgatattgctattttagcacgctacatgctgatgctgtccttcaacaattcccttgatgtggc
agctcatcttccctacctcttccacgttgttactttcttagtagccacaggtccgctctcccttagagcttccacacatggactggtcattaatatcatt
cactctctgtgtacttgttcacagcttcattttagtggtaagttctaggaaaggaatttgtgtttaccagttcctttctccattttacttcacctgatca
atatagattatcttatttatgtttgtgctctaacaccaagttgctaatttaagcctccagtaatgacatgaaatattaccaaaaagaaaata UCSC - Wallace MR, Andersen LB, Saulino AM, Gregory PE, Glover TW, Collins FS.A de novo Alu insertion results in neurofibromatosis type 1.Nature. 1991 Oct 31;353(6347):864-6.PMID: 1719426.
PCR precise insertion position unknown TSD unavailable 65 800 480 Neurofibromatosis exon
793 chr17 27362134 27362427 RIP_Alu_chr17_027_02 0 - pAlu17-30187803 NA NA SINE Alu Sg gtgaaaccccatctctactaaaaatccaaaattagctgggcgtggtggtgggtgcctgtaatcccagctactcgggaggctgaggcacgagaatcatttc
aacccaggaggtggaggctgcagtgagccaagatcgtgccactgcactccattctgggcaacggagctagattctgtcttaaaaaaagaaaaatgcataa
aggagcacaatggtttagcctggaatcccagcactttgggaggccaaggcaggaagattgcttgagccctaaagttcaagaccagcctgggcaatatagt
gagacctcatctctatttgaaaagaaagaaagaaaaatcaaagaaaatgaggtatatatgcacgataggatattattcagccattaaaAAAGTGAAATCC
GGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACGAGGTCAGGGGTTCGAGAACTGACTGGCTAACATA
GTGAAACCCCGTCTCTTCTAAAAATACAAAAATCAGCGGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTT
GAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTAGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAGTGA
AATCCttcatctataaagctagaggtttggaaaataaaacctatttgcagcaacatggatagaactggaggacattatgttaagtgaaataggccaagga
cagaaagacaagtatcgcatattctcattcatatgtgagagattaagaagttgatttcatggagataggcagtagaatgatggttactgggggctgggaa
gcaggtagggatgaagacaagttgattgatgggcataaaagcacagtcagatagaaggaataagttttagtttttgtttgcacagtagggtaactagagt
caacaataacttagtgtatattttaaaatagctagaacatttgttatcttcccaatacaaaaaaaaggataaacatctgagatgatggatacc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
794 chr17 27460864 27461168 RIP_Alu_chr17_027_01 0 + 9918 NA NA SINE Alu Ye5 aaaatacaaaaattagctgggcatggtggtgcatgcctgtagtcccagttacttgggaagctgagatgggtggattgcttgagcccacgagattgagaat
gtagtgatccgtgatcatgccactgcataccagcagcatgggcaacagagttagatcctgtctcaaaaaaaaaaaaagttacactgcagaaattagaaaa
cacaacaataaaataaaaaacaaaacaactagccggttgttatagatatttgggtttagtaatgaatttcctgtgacagatagcatcatacgtagaatcc
aaacgtgctatcatctcaaactttgatgtaagtgaaggacctatggtaaactgaaagatacataacaatttgaaaaaatgttttatAAAATGCGAGGGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAATGCGAGGGAAaagtagtttgaaacaaataatttggtttatatgtgatttttagatagttatgtataactatgttaataatattgtatatagt
atatctattcatctgtatcttcaatgtttatatactgaagttggtaaaaactttttttacaacaaaattagtcacttttatttaaaagaaacattacaaa
taagtgtgcaaaattaaacatcatgattaaatacacataaaaggaacatgcatactttacatcaaaatccacatacagagttagttgattacatgacagt
aacagtaaaggaactgaaggaactggcaaaaccgagaactcgctgctatgcagattttatatgtttgcaatctgaaatcaaaaccataaaatagggtttc
ttta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
797 chr17 27917972 27917973 RIP_Alu_chr17_027_03 0 - pAlu17-30742559 NA NA SINE Alu Yg6 atagccatgaacaggataaacaaggttcctgtcctcaggatgcttagacaaatgctctaattcagctcttcttttttcatttcctgctcaatttattgac
ttctgccaccccttcatttgttgccctttcccagcatcctctaccttcagccagaaacccctgttttctcagtagctttgtcctgttaatatcccagaag
cctacagccgcatcatctgctcctttttgatttcctccattctgtgaacatggatggagcacgggctgccctcagtcccagctctgccgctccccacctt
ggatgcagaggctcccattcctctgttggaaagatcacacagatgtgtctcagaggcttggtacacagtgcctgcctgatttggttaaaAAGAAGCTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGACATGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAGAAGCTTAAaagagaaagaccaaagagggaagcttttacaagttgctttttaaagctttggaagtttgtgtttgaggcttcaaacagataactaatt
aagttttagcactccctgtgattcggacaacaaccgtaactactgtcatgttactactattaattgattctatttggttccaatgacacgagtcaaaaaa
tgttttcccaactgtggttggactcagttgactttccaatcatatcactcccctccttcagtggctactcaagatcaggtctgaggtcactcccacagcc
tacacgatgtggccccacctcctcactctgcattttcctgcacttacctgcaggctcacctgcaggccacaccagctttccttggcttcctcaaggaaag
c Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
841 chr17 33650509 33650827 RIP_Alu_chr17_033_01 0 + pAlu17-36307221 NA NA SINE Alu Y ggtcggatcccttgagcccaggagttcaagaccagcctgggcaatataggaagaccccccccatatctataaaaaaatacaaatacgaatattagccagg
catggtggtacacgcctgtaatatcagctacttgggagggtgaggtgggaggatggcttgagaccaggagacagaggttgtggtagttgagatcatgcca
ctgccccccagcctgggtgacagagcgagactctctcaaaaaaaaaaaaagtaaaaagcaatccagctccaatactgatgtacttgtaagagtttatgcc
aaacttggtatctatttaaaaatcagctcatacgggaataagatttccagtcaaaatggactactttcatactaaaattataaggtcTAAAACAGTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCGGGAGCCTGTAGTCCCAGCTACTCCGGAGGGTGACGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGGCTGGGGGACAGAGCGAGACCCCGTCTCAAAAAAAAATAAAAAATA
AAATAAAATAAAATAAAATAAAACAGTTCTCattttatagacactaatcgagttccacattctataccatgtttctttttagcatgttcttcccctgtaa
ctaactccattatttagcttctaatcttcatattgtctcataaagcaaatgtttttctctgaattaggagtatgacttatctcaattttaaactatagta
caaaaagaaaaaaaaactttaagaaaaacataaaaacgaagcctctttgaggagcctttcatgttcaaagtacttaatttttcaaataactcatcagctt
tattatgcgtattatattcattttatacttatgaaaatatgatttccctagtaccacaaaataagttaatcttggaagtggaattttaattgtgacattt
gcccgggtgtggtggctc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
878 chr17 38499347 38499348 RIP_Alu_chr17_038_01 0 - BRCA1|c.1739_1740insAlu TTGTGAATTTTCTGAGACGG GAATGCTATGCTTAGATTAGGGGTT SINE Alu Sq agagttcactccaaatcagtagagagtaatattgaagacaaaatatttgggaaaacctatcggaagaaggcaagcctccccaacttaagccatgtaactg
aaaatctaattataggagcatttgttactgagccacagataatacaagagcgtcccctcacaaataaattaaagcgtaaaaggagacctacatcaggcct
tcatcctgaggattttatcaagaaagcagatttggcagttcaaaagactcctgaaatgataaatcagggaactaaccaaacggagcagaatggtcaagtg
atgaatattactaatagtggtcatgagaataaaacaaaaggtgattctattcagaatgagaaaaatcctaacccaatagaatcactcgaaaAAGAATCTG
tgccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctaaggtcgagagatcgagaccaccctggccaacat
ggtgaaaccccgtctctaccaaaaatgcaaaaaaaaattagccaggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaat
cgcttgaacccgggaggcggaggttgcggtgagccaagatcacgccactgcactccagcctgggcaaaaagagtgaaactctgtctcaNNNNNNNNNNAA
GAATCTGctttcaaaacgaaagctgaacctataagcagcagtataagcaatatggaactcgaattaaatatccacaattcaaaagcacctaaaaagaata
ggctgaggaggaagtcttctaccaggcatattcatgcgcttgaactagtagtcagtagaaatctaagcccacctaattgtactgaattgcaaattgatag
ttgttctagcagtgaagagataaagaaaaaaaagtacaaccaaatgccagtcaggcacagcagaaacctacaactcatggaaggtaaagaacctgcaact
ggagccaagaagagtaacaagccaaatgaacagacaagtaaaagacatgacagcgatactttcccagagctgaagttaacaaatgcacctggttcttt Other - Teugels E, De Brakeleer S, Goelen G, Lissens W, Sermijn E, De Greve J. De novo Alu element insertions targeted to a sequence common to the BRCA1 and BRCA2 genes. Hum Mutat. 2005 Aug 8;26(3):284 [Epub ahead of print]PMID: 16088935.
Mutation Screening NA 60 0 0 breast/ovarian cancer exon
892 chr17 40280045 40280339 RIP_Alu_chr17_040_01 0 + Yb8AC1758 CCAGGAGAGGAGGGCTAACT AAACAAGGGTTCTGCCAATG SINE Alu Yb8 tccagcctgagtgacaaagtgagaccctgcctaaaaaaaaaaaaaaagaagaaaaagaaaagagagtttgccgtatggttaggcttagaaggtatcccat
tggacagggcacggtggctcatacctgtaatccctgcactttgggaagccgaggtgggcggatcaagaggtcaggagttcaagaccagcctggctatcag
ggtaagaccccgtctctactaaaaaaatacaaaaaattagctgggcatggtacacacctgtaatcccagctacttgggaggctgaggcagaattgcttca
accaggacctgggaggcggaggttgcagtgagccgagatggcaccactgcactccagcctgggctacagagcgaaactccgtctcaaaaaaacaaaaAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGAAGgca
tcccattggcagaacccttgtttccagcccagggatgaaggtagccagttggtaattgtgaagaacctgcctggaaagagatggacctggaaaaacagga
gcagctcaggaaccagaatgtgttccttagtactcatgtgcaaaatatatgctaaattacatgcaaatcaatgtccaatcattataatctctggcaattt
ggtaactaatgctgttacactatctggtctaggacatttctggctccctggggccagatcctgctctgtagctcccacaggagaaaccatcacagaccaa
aggccagcgggggccccagcactcaaggactgtttctcccaccaccatctgtggacttttccagctgtttttcttggcccaaggatcacaccca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 999 706 NA promoter
897 chr17 40921806 40922113 RIP_Alu_chr17_040_02 0 + pAlu17-43576949 NA NA SINE Alu Sp gaggattctaacaaggaccaaactctgaatgaatgaaaacaggaccgttgcctgacccattcaccattgtatttctagtacctggaacagtgtttgtcac
acactggtgctcaaaaaataagctgttgaatgaattgattaataaaataaaaacaaggcacggggtaagtacctccacttcacacactgtgggaagttgg
ggtatacaactcttaagtgctggggcaactgtggagctcctgtcattaagccaagctgccaataaggctgaaaacaacttaaatatactgcatattaatg
ggaggacattgaaggtaaacagcattcacttttcaaaggaatacgactataagtggcaagcagagacagtgttctttggggctctttaaaaCTGCAATCA
GCCAGGTGCGGCGGCTCACGCCCGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCGGGAGTTGGAGACCAGCCTGATCAACACA
GAGAAACCCCCATCTCTACTAAAAATACAAAACTAGCCGGGCATGGTGGTGTATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTT
GAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCATGCCACTGCACTCCAGGCTGGGGAACAAGAGTAAACTCCGTCGAAAAAAAGAAAGAAAGAAAG
AAAAAAGCTGCAATCAaatggcccacccatctgatgccgggtcctcaggattcagagaaaatgtgtaccaaaaagcccccaggaaactataaatgctgag
catgggacttgggtgcctctggaatgtccttctgcctcagctactctgagataacatggttccctgtgttcatggaacccagatggccaaaagtcaatga
tccagcacttaaaagaaaagaaagcgattcaagagcctctgtacccacctaggcctcagcctccccaggacctactcacctatactcttcacaacaggta
acgttgcctctggcacccatcatatcccctgaattcagcatcaggactgatctgccatcagctctggcagggagaggcccttacaagtgccaagaaaagg
aacacga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
897 chr17 41005379 41005683 RIP_Alu_chr17_041_01 0 - pAlu17-43660519 NA NA SINE Alu Sx ttgagtttggaccatagagaagtcattcttgtgtggacctcagtttactcacctgtacagtataggatggactagatgatctaatggtcaggggattggc
aaacttgttcttagggcaccaattagtaaatattttaggttttgcaggccacctggctatgtcacagctgctcagctcggcccttgtaggatgaaagcag
ccatagacaataagtaaacaaatgagtgtggctgtgttccagtaaaactttatttccaaaaacaggctgtggccggccatagtttgttcaccccattttt
gagctcttgacattctttagtctgtgatttcgataattagtttaggaaaaaagctttgactttcataaataatgcttctggaaatctagtAAAACCTTTA
AATTTTGGCCAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATTGCCTGAGCTCGAGAGTTCGAGACCAGCCTGGC
CAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTAGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG
AATCGCTTAAACTCAGGAGGCGGAGGTTGCAGTGAGCCGATATCGTGCCACTGCACTTCAGCCTGGGTGACAGAGTGAGACTTCATCTCAAAAAAAAAAA
AAAAAAAACCTTTAcattttatttttgctttttccctttatcaggaaagtaatgtagaaaatttagaaaacccagaacattaatattttggttcctctca
ttagttaaccatctttgggtggacatgtgtacatacatacatacctttttttttttcttttgagcaaaaaagtacatactttttctttttttctcttctg
ccacccaggctggagtgcagtggcgcgatctcggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggga
ctacaggtgctcgctgccacacccagctaattttttgtattttttaatagagatggagtttcaccgtgttgcccaggctggtgtcgaactcctgagctca
ggtg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
912 chr17 42890377 42890672 RIP_Alu_chr17_042_01 0 + pAlu17-45877357 NA NA SINE Alu Y cgtgatcttggctcactgcaaactccgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagcagggattacaggcatgcgccaccacacc
cggctaattttgtatttttagtaggggtggggtttctccacgttggtcaggctggtctcgaactcctgacctcaggtgatccgcccacctcagcctcgca
aagtgctgggattacaggcgtgagccaccgcgcccggcctgaagggtacttttgacaaactcagaggccccacagtacagggatgtacattcacaaacaa
ccaagagaaaaagagaacaagtaaacccctctcctcctttcagatgcaacactgaatggcaaaccaggggtgagaatacactaaAAGTACATAGACCCTC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCTGACTCTACTAAGAACACCAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAGTA
CATAGACCCTCaaagagaggacaccagggctctgaccatctcaaactctgaaatttgatgaaggtaatccgaaattacaacccccaaggcacgaagcaga
tgcaaatatacatcctctctaaaagaaaatagtatcattttggctacaaattatttctacctttttttttttttttttttttttgagacaaagccttggt
ctatggcccaggctggactgcactggcgtgatctcggctcactgcaacttcctccttccagttcaagcaattctcctgcctcagcctcccaagtagctgg
gattacaggtgcccaccaccacacctggctaatttttgtatttttagtagatatgaggtttcactgtgtagaccaggctggtctcgaactcctga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
920 chr17 43972220 43972221 RIP_Alu_chr17_043_01 0 + 12784 NA NA SINE Alu Sq acagaccactcacaattggtcctgacccaagaggaaccctgccccaatcaggatggaataagtgagtgcggccacttggagctgccctctaatctgccac
caccactggggtctgctgccctatctgggaaccaccccctcttccccttactcctccatggccaactgggaaaactcaagctaaaaaggatgacccaaga
gatgaaagaaggaaaagaagttaattcggaacacagggatcctgaattgcaatcctttatgaatcccaaattgccaggcattcccttgaatctgaattgg
gtagggaaattgaagatgggagtcacttccttctgcaaattcattgcctctttgtgctgccgtggtatcatcagagacggtgagtttcataaatttggaa
CGGATCACTTGAGGTCAGGAGTTCGAGGCCAGCCTGGCCAACATGGTGAAACCTCATCTTTACTAAAAATATAAAAATTAGCCAGGCGTGGTGGCAGGTA
CCTGAGGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCACTTGAACCCAGAAGGTGGAGGTTGagaagacagccagcaacgcttttgtgtttcctgt
aaaaagagtttcaactcctctccaataatcagccaaagacaacacctggactaagacctctcacccctaggatatccaaagtacctgaatctaaacaggt
acattgagcctttggttggctcaccactactttggcaggaaggaatcaggactgatgcaggcccaggcaggaacaaagattccctgccatttgagctact
ggtttgggttgggagaattggaaggcaggggccaggtaaagtgagtcaaaaattctgaagcatggaggaaggcagaaagcaaggtggcactgtgatctag
cagtacttctcaaacttttaagtgtacataaatcacttggggagctgctaaactgcaaattctgat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
925 chr17 44583452 44583771 RIP_Alu_chr17_044_01 0 + pAlu17-47570433 NA NA SINE Alu Ya5 gatgtgctttgttaaacagatgcttgacggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggacacaaacactgcggaagg
ccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatccgctgaccttccctccactattgtcctgtgaacctgccaaatccccct
ctgcgagaaacacccaagaatgatcaattaaaaaaataataataaaaaataaaaattttgcctttttcatattaccgtaagtattcactatgatgatcta
atcttttttttcaaggtaattaaatgatctcctgcttaaactgggtcccgaaggctaacatttcaaccattgtaccgtagttcctcaaaAAGCTAATCTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGCTAATCTTgctggatggtgctatgtgcttgcttttgactaaagattgttattggccgggtgtggtggctaacatttgt
aatcccagcactttgggaggccaaggcatgcggatcataagatcaagagatcaagaccatcctggccaacatggtgaaaccccgtctctactaaaaatac
aaaaattagccgggcatggtggtgtgtgcttgtagtcccagctactaaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtga
gctgagatcgcaccactgaactccagcctggcaacctagcgagactctgtcacaaaaaaaaaaaaaaaatcgttatcaacaaccaaaaaaaccataaaaa
tagttactctgtttcctct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1028 chr17 58095055 58095351 RIP_Alu_chr17_058_02 0 - Ya5NBC157 CATACGTTAAATCACTCGGTACTCA TCAGAAAAGTATACAGGTGATGTGC SINE Alu Ya5 agcgctgggcagggaggctggtattgcaagccggggtgactctgacctgcccgccctgggcctccaggcagccctgcagtccatggctgaagatgaggaa
gacgttgggttctggaagggaaggcaagacacgaaggcatcacaggggctctcctggttggcccttgatgaccggtgtggctgacaggcacctaccatgt
gcccagtgcaggatggtgagccgtcactcatacgttaaatcactcggtactcactaccaaccctctgaggtggaaatgagtggcagtgctaagcccttgt
gcccagatgaggcagaggcctgcaggactacctctgttctagcccctgctcaccaggagggaggactcagtcctctgtaccaccctcAAAAGCAAACCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GCAAACCCAactccacccggcacatcacctgtatacttttctgaagattttatgaggaggagtggaggcatttacaccacacaccacgttgcaacctcaa
tctcaatctctattacatggcgtggtttttctgccaaaattctcctttgatccggaggcattgtgtctcacccttccccctgccccttgcactggttcca
tcctttccttcttctaggatcttcccagaccactcatcccacccctgaactatttcacgccttaatttttacgcagcaatttaattctttggcttcctca
acctttcctctttccacctatctcctcgctgagcaggcaccctctgtagaagtcactgggggaaatccaacctgccccccaccacagcacacccac UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening NA 60 516 207 NA intron
1034 chr17 58919632 58919633 RIP_Alu_chr17_058_01 0 - Ya5NBC102|Ya5ACE TCCCATTTCTCTAGACCTGCTG CCCATAACAGGTCTTCATATTTCC SINE Alu Ya5 acacagccaggctctcccaacaccacattacctgcctcctccagggatctaccttttcctaggcttggggtttcacagcacctctttgaggaaaatgaag
ggacccaagtgccagtgatgttggcagcagggactcaccattgagccgggcagcctggttgatgagttccacgtatttcgggtaaaactggaggatggct
ctccccgccttgtctcgccagccctcccatgcccataacaggtcttcatatttccgggatgtggccatcacattcgtcagatctggtaggggtttgaatg
ccttgagctccagcccttagctcacctctgcttgtaaggggagctcagagaatttcagagctggaataaaattggcgaaaccacatAAAAGTGACTGTAT
CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC
TAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG
CTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGTGACTGTATaggcagcaggt
ctagagaaatgggagaaaggatgggagtggtctccagcagtggcttacagagtccccggcctggggcacatgctgcagacacctgcagggcctcagcagt
cctgtgaggggcgtgcttgagtctctctcctctcctttttttttttttttctttctgagacagggtctcactctgttgcccaggctggagtgcagtggcg
ccatctcggctcactgcagccttgacctcccaggctcaagcaatccttccatctcagcctccctagcagctaggactacaggcatgcaccaccacatcca
actaattttttgtattttatttgtagagacggggtcttgctgtattgccctggctgggctcaagcgattctcatg Other - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.PMID: 8576959.
Candidate sequencing|Candidate screening NA 55 483 194 Hypertension intron
1043 chr17 60094398 60094709 RIP_Alu_chr17_060_01 0 - pAlu17-63081380 NA NA SINE Alu Sg1 tcggatcactgcaaccttgacctctgtggactcaggtgatccttctatctcagctttccgagtagctgggtctataggtgcatgccaccactcctggcta
attttttgtagatagggggttttgccatgttgctcaggctggtttcaaactcctgggctcaagtgattcctctgcctcggcctcccaaagtgctaggatt
acaggcatgagtcaccatgcccagcccttgaatggttttaaagtgttattcttatctgaatatttgttttaaacaacaggatttaaactcacaggaaagc
ctaaatataaacctctgcacgttaaccctatatacatttttctatgctgtcacttacatatttgaatgtactgctttaaacttccaaacAAGCAGCCTCT
GGCTGGGCGCAGTGACTCACTCCTGTAATCCTAGCACTTTGGGAGGCCAAGGCGGATGGATCACAAGGTCTGGAGTTCAAGACCAGCCTGGCCGAGATGG
TGAAACCTGATCTCTACTAAAAATACAAAAATTATTTGGGCACGGTGGTGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGGAATTGCTTGA
ACCCGGAAGGTGGAGCTTACAGTGAGCCAAGATTTCGCCACTGCGCTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTGAAAAAAAAAAAAAGAGAGAGG
AAAAAAAAAAGAAGCAGCtcccccaggtctcccatcacgttctgaaatcctaacttctattacctaatacaaggctacaaattatgttagtcgggtggtt
gggaacaaagcgtgtgccataaaaataaggtaaatgtgaatgtgtacatcagtttgctaagttttttgccactgtctggcctcttaaattgtggtagcag
ctattgttcacattgatatattacattgatattgatattgttcacgtcatatatatttgtagtacaaggaagcatttctaaaggaccttgttcattgctt
tgcacaaaatagccacttaatatttgttgaatgaattgctggcactatctctggtgttttaatttttatttatttatgtatttatttttgatatggagtc
tcactct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1060 chr17 62361016 62361318 RIP_Alu_chr17_062_01 0 + Ya5_421 GAGGCTGTGACTGCAAAGTG TTCGGTGTTCCAAAAACAGAC SINE Alu Ya5 ttgaaaattggcagatttgtctcttcagtacctgctatagagctgaggcaggaagggcctgacatcccgtttacattgacaacaacaaatggtgtcagca
ccatgctgaccactgacactgatgacattccttatctcagcaatcttaggaggcaggtcctggatcagttcccatatttggatgaggaaatgggagccca
gagaggtgaaagaccttgcccagggtcacacagctcatgggtagcacagctgggattcaaactcaggaggctgtgactgcaaagtggatgttcccgctgc
agcaacaggcagccttcccaaggatcacttctcaattgtaggatgagtgggcaaaagagccagtgatcctgcacttctgggcaggtAAGAAATGACATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAATGACATCTgtgcaagattagtcatggcaagtctgtttttggaacaccgaagtctgttctcatgctgctaataaaaacataccccagactggg
taattataaagaaaaagaggtttaatgaactcacagttccacatggctgaggaggcctcacaatcatggtggaaggtgaaggaggagcaaaggcacatct
tacatggtggcaggcagagagagggagcatgtgcaggggaactcccctttataaaaccatcagaactcgtgagacttattcactatcatgaaaacagcat
gggaaaaatccacccccatgattcaattaccccccaccaggtccctcccatgacacgtgggagttattacaattcaaggcgagatttgggtaggaataca
gc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 493 177 NA intergenic
1065 chr17 62951327 62951646 RIP_Alu_chr17_062_02 0 - pAlu17-65938308 NA NA SINE Alu Yb7 aatggttggcaaagcatgcaggctgatgcctgctttgtaaataaagttttattggaacacagcgatgctcattcattctatggctgctttcatttacaat
ggcagagttgaatactttgagagactgtgtaacccccaaggctgaaaatatttattatctggccctttatagaaataagtttgcagaccgttgttctatt
ccacggctgggtccagtctgggccaccctcagctgttcatctagatctgttctgcccaggaccaaagctatttgctatgtgtggccactgagcctttgaa
gtgtggcccatggaatagagggattgaattttaaattttctttcattttaattcatttaaatttaagactggtgcttgattcagttattAGAAAACCTTC
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAACCTTCatatatgtttgaaacactttgggtatgtgaatctactttttcaactgggaattttatgaaatctaaataa
agatcaagtactgccaatgaaaatttagcgtctgacttgggagtgctgtttaagtctaaaatgcacactagatttggaagacttactacaaaaaaaagca
aaatagttcattaataatttttatgttgattgaaatgatatttttgtatactgggttaactaaaatatatttttaaaattaacttcacttgccttttttt
ttccttttctttcttatttttttagagacagggtctcgctctgtcatccaggctggagtgcagaggtatgaccgtagctcattgcagccttgacccccag
tgctcaagcgatccttcca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1068 chr17 63425566 63425876 RIP_Alu_chr17_063_03 0 + pAlu17-66412496 NA NA SINE Alu Sq agacaagaccagataaacactagtaaattcatgcccttggggccctgtttatagatgtcctcagatccccttctttcacgtgctctttctttaagtcaag
tggaataaaattcactaggcttaagatttctcagttacaaccacatctctaacataccttcttaccattacattcaaatcacccagaacctattgggggt
gttcccgaaactcttctgttgcaggaatgttgtgaatgccctgaaacccacaccctgaaatgtagaggcagggagcaggctggatggctcccaggggctc
ccagaggctcctggggtggcaccagctggaagaacctgccagagtccagtcctgggtcttgggcagtgtctggcttgagccttagaaatCACACTAATGG
GCCAGGCGCGGTGGCTCACGCCTGTAATCTCAGCCCTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATG
GTGAAACCCTGTCTCTACTAAAAATACAAAAATAGCCAGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGTAGGCTGAGGCAGGAGAATCGCTTG
AACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCACCATCGCACTCCAGCCTAGGGGACAAGAGCGAGACTTCGTCTCAAAAAAGAAGAAGAAGAAA
AAAAAGAAACCACACTAATGGtggaaggtacaaagagttcaaagagactgatctatgtagccagaatgccagtttattaatttacaatgagaaatcaaat
cagaaatgcaaactcatgtcagcctgggtagcattctctttctataaacaagccacagaggaagccaagttatcctcagggtgcttggtaatataaacca
gagcctggggagtttgtcacctgattggaatgtttaacagtattggtttctgacagcctaagtgtttgtctctgcaataggtgtgtatacctgtcaggag
gaagaacccaagagaccaactggcattcccttccttgataatttctggtattttgagtgtgtgtttctgcttagcagatatttattgagcatctactctg
tgttgtataa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1068 chr17 63434827 63435133 RIP_Alu_chr17_063_01 0 + pAlu17-66421768 NA NA SINE Alu Y agctcactgcatcctccacctcccagtttcaagtgattctcctgcctcagcctcctgagtaactgggattataagcgcatgccaccacacctggctaatt
ttttgtatttttagtaaagacagggttttaccatgttggccaggctggtcttgaactcctgacctcaggtgatccaccggcctcgggctcctaaagtgct
gggattacaggcgtgatccaccatacctggcctagtattaaatctttataacaacataattacaagcttgagacttctattaccctgttttacagatgag
taactggggcacagtaaggttgagtaatttggccaaggttatacagctagtaattacatgataccaaaactgatagcttctgccagtgctcttAATATAA
GGTTGAAAGAGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTG
GCTAACACGATGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCTTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGG
AGAATGACGTGAACCCGGGAGGCAGGGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCTTGTCTCAGAAAAAA
AAAAAAAATAATAAataataataataagaaggttgaaggaaaaaagaaaagagccaattaacataaaacatagctgttagaagcctccttctacaaatgg
ccatgaagtctaagtcgataattatatctgctttcttttttttttttttccttttttgagacagagtcttgctctgtcgctcaggctggggtgcagtggc
gtgatctcggctcactgcaacctccacctcccaggtttgagcgattctgctgcctcagcctccagagtaactgggactataagcatgcaccaccatgcct
ggctaatttttgtatttttagtagagacagggtttcaccatgttagtcaggctggtctcgaactcctaacctcaggtgatccactcgcctcaccctccca
aagtgct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1070 chr17 63599912 63600215 RIP_Alu_chr17_063_05 0 + pAlu17-63105691 NA NA SINE Alu Y tgagccaagttccactttcagaaatgctatgggcaaagcttcatgatgtttatgaattcatacataaagactataaatttcagccaggggcaatggctca
tgctgataacagctactcgggaggctgaggaaggacaatcgtttgaggctaggaattagagaccagcctgggtaacacagctagattccccgctgtcttc
ccctctaaaaataaatacataaataaattagtgtggtggcatgcacctgtaatcctagctactaggaagcctgaggcagggaggatggtttgaacccagg
agatcgaggctgcagtgagctatgattatgcaattgcaccccagccttggcaatagagaaagaccccactctctatttttttaaaaaaaggCTGTAAATT
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACAAGGTCAGGAGTTCAAGACCATCCTGGCTAACATGG
TGAAACCCTGTCTCTATTAAAAATACAAAAAATTAGCCAGGTGTGGAGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGA
GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGAGGGCGCCTGTGTACTCCAGCCTGGGCAAGAGTGAGTGAGACTCCATCTTAAAAAAAAAAAAAAAAA
AAAAACTGTAAATTtctgaatgagttcttaagatgaaatacatcttacttgtgcccacttccttttcttagaaattaactccaaaggccagtcacggtgg
ctcatgcctgtaatcctagcactttaggaggccaaggtgggtggatcacctgaggtcaagagagtgagaccagcctggccaacatagtgaaaccccatct
ctactaaaaatacaaaaattagcctggcgtggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaagca
gatcttacagtgagccgagatcatgccactgcactccagcctgggcaaccgagcaagaccccatctcaagaaaaaaaaaaaaaagaaagaaattaactcc
aaaat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA promoter
1070 chr17 63606370 63606623 RIP_Alu_chr17_063_04 0 + pAlu17-63077263 NA NA SINE Alu Y ggggtttcaccatgttggccaggctggtctcaaactcctgacctcaaatgatccgcccgcctcggcctcccaaagtgttgggtttacaggcgtaagccag
cgtgcccagcctatctgtggtatttttagtgtgatgtctagaacttcatatacttttttggattactttaattgtagggctgtatccaaactgatcaaat
gctctcggaggtaactatttggagaagtgacttcactgattgattaaaataaatgactggcatggaataagnnnnnnnnnnnnnnnnnnnnactggcatg
gaataaggattaaaatatattaatctgaaacatttaaaattgcattaatgttataacagcctaaagcaaaactaatgaatcacataaaaAATCCCCCACG
TGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGCCGGGCGGATCATGAGGTCAGGAGATTGGGACCATCCTGGCTAACACG
ATGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGCCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTG
TGAACCCGGCAGGTGGAGCTTGTAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACGGAACGAGACTCCGTCTCAAAAAAAAATCCCCCACG
ctgttgtccttactagtttactttgtgctagacacttttgcatgtatatgcatacaacttttattctgtttttaaactttgcattacatatacattcttc
catattatatgatcttcattaaaatagttaaatggctgcataaaaaaccatgtggttcctggaccattatgctgttccctcattccccttttgtttttaa
tggaatagagcaaagaacatcttctgtattattgtcaagaatagtgagaggtgacagcgtgctggcagtcctcacagccctcgcttgctctcggcgcctc
ctctccctgggctcccactttggcggcacttgaggagcccttcagcccaccactgcactgtgggagcccctttctgggctggccaaggc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1071 chr17 63718956 63719255 RIP_Alu_chr17_063_02 0 + pAlu17-66671776 NA NA SINE Alu Yi6 gcctgtggtcctagttacttgtgagactgaggtaggaggatcacctgagcccaaggaggttgaggctgcactgagctgtgtttacaccattgcactccag
cctgaaagacagagtgagaccctgtctcaaaaaaaaagggggggggggaggtggttagagtgtaaattttatgttatgcatactttaccacaattttcaa
aaattatttgaaagaagccacacacaaaaatcttgtttagtgaaatcacgtattgtatgatttcgtttatatggaatgtcccaaatgggcaaattcacag
gaagtaagtaaatacttgccaggaaatgggaggggaaatggttgagtagggccagtgattctggggcttctttctggggtgatgAAAATGTTCTGGAATT
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGATGCGGTAGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTTTCTACTAAAAATGCAAAAAAATTAGCTGGGCGTGGTGGCGGGCATCTGTAGTCCCAGCAACTCGGGAGGCTGAGGCAGGAGAATGGTG
TGAACCTGGGAGGTGGAGATTGCAGTGAGCCAAGATTACACCACTGCACTCCAGCCTGGGCAACAAAGCAAGATTCCGTCTTAAAAAAAAAAAAAAGAAA
AAATGTTTTGGAATTaaatagtggtgatggttttacaaccttgtgaatactatactaaaacccactaaattgtgcacttatttaaaagggtgaatttatg
gtgtataaattaattatatctcaataaaaataaaaagtggtatgaagaattgggaaaacatatgtatatgtatatatatgtatatatgtatatgtatata
tatgtatatgtatatatgtgtatatgtatatatgtatatgtatatatgtgtatatgtatatatgtatatgtatatatgtgtatatgtatatatgtatgtg
tatgtatatgtatatatgtacatgtatatatatgtatatgtatatatgtgtgtgtatgtatatatatatgccttgagtcttttttaatcagttcccttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1073 chr17 64060401 64060716 RIP_Alu_chr17_064_02 0 - Yb8NBC227 AAGAAAAGGGAAGCCTGGAG CAGTCATCACCAGCCATGAG SINE Alu Yb8 actgctcttaagaaatgcctgagactggataatttataaaggaaagaggtttaattgactcacagttctgcaggcttaacaggaagcatggctaggaggc
ctccggaaacttacaatcatggcagaagggggaggggaagcaaggcacatctcacatggtggcaggagagagaggatgcaaagggggaagagccccttat
aaaaccatgagatctcgtgagaactcactatcacaagaacggcacaggggaagctgccccatgatccaaccacctctcacagcatccctccctcagcaat
ttgagatgagatttgagacaaggggattacaatttgagatgagatttgggtggggacacaaagcctaaccatatcactaaggtttGAAAATAAAGGTTTA
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAGGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGGAAAATAAAGGTTTAcagggctccaggcttcccttttcttcagttaagcacctgccttgaccattttatagaacacaaggtgagt
gaggtattgtcctgaccctccagaaccagggagagggtaagagaagtgaggtgcccaggatgcaaaatttaaggaagtagcactccctgcacctaagaag
cactcacttgccaagccctggtcccagcccaggtgtacagtcttaagtagaaagaggcataaacaaactagtctaatataacagaaggcataattagaat
ctacaaagatgtagttgaaacacaaagaggaaagggttcattcttcttaggaaaacattcttcagggttttcagtaaatgtcttcattgtattttttgct
cttttcccataccag UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 881 546 NA intron
1077 chr17 64599261 64599557 RIP_Alu_chr17_064_01 0 - pAlu17-67552076|Ya5_435 CTGGCGACTAAGGTGAAAGC AAAAGGTAATCCCTCTATCCTCTTG SINE Alu Ya5 ataagatctgggaaagaaagggtagtgctcaatacatacttggctgatcaattgattcttaaaacaaacaaacaaaattatccttattccttcccatttg
ccagtaaaaaaaattgtaaaataaaataagtccatcacaataaaaatacacaatctcagaaaagtcatttgtttggaatggggaagaaatggagcaggaa
ggacaatgagaaagctccacagtagtctggttgagagacagtatggattgtttggtttttttttataatagccatgtaactttcaacatatacaggtttt
tattcattagcaatattgttaccttagccataaaaaggtaatccctctatcctcttgtcttggattaaatttaataatacacgtcAAGAAGTCTATTTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGA
AGTCTATTTGGtcattttagctttcaccttagtcgccagtctttattaagaattttctattggggatcataatgtattcttgttaacaaaagcttcttcc
ctattgtctctaaaaggagaaactatcattgtcaaatgggtatatctgcatatgggaacattatgatatacatcatgagaacacctgcatcttaaatgtt
ttacaaaatatcaatgggttgagtatgtctgatacaatatatttgaacttgccttgtaggcctccaccatcatgttttccatcactttaatcaatcattt
tgacctaagtatattgattaccaccatggtattggttccttcatataccttgcttggatttaaaacttttttggaagtggtaagaaatgttaccaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 407 96 NA intron
1078 chr17 64717905 64718224 RIP_Alu_chr17_064_03 0 - Yb8NBC48 AGGGAACAGGTGATGTTTGG GAGGATGCAAAAGCATGTGA SINE Alu Yb8 tgagtgggtaaaggaaatatggcatatatatatatatatatgtggcataaatatgtggcatatatatatatgtatatatatgccattgtatatatataca
tatatataatgaaatactactcatccataagaaggaatgaaataatggcatttgcagcaacctggatggagtcagagaccattattctaagtgaagttaa
ctcaggaatggaaaacgaaacatcatatgctcttgcttataagtgggagctaagctatgaggatgcaaaagcatgtgaataatgaactttggggacttgg
agggaaggatgaggggttgaaggataaaagactacacattggatgcagtgtatactgctcaggtgatgtgtacaccaaaatctcagAAATAACCACTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATAACCACTAAAtaatttacccatgtaaccaaacatcacctgttccctcaaaactattgaaataataataataataata
ataataaagtaatagcataagctctacagatggcttttaaatgactataaaatttgtagatagtgtgtgcacatataatcctaaaacctaatgtacagtc
atgtgctgcataacaatgtttttgtcaatgatggactacagacaccacagtggtcacagaagatcataatcccatatttttactgtaccttttctatgtt
tagatatgataagatagagataccattgtcttacaatttcctacagtatagagtacagtaacatgctgtacaggtttgtagtctaggagccatgggctac
cacatagcctaggtgcgta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 58 511 178 NA intron
1086 chr17 65671534 65671852 RIP_Alu_chr17_065_01 0 + Ya5ac2571 CCACAAATTCTTAAAGCCCA GCCACAAGCTACGAGGAAAA SINE Alu Ya5 acagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcagagtgttccatggaagtcag
tgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaatgactataaatcatgctgctataa
agacacatgcacacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactagattaagaaaatg
tggcacatatacaccatggaaaacccacaaattcttaaagcccacatctgaaaatctagacattcaagtatgtacattttctttcAAGAGTATCATTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAGTATCATTACAgtgttgttgacgttactgaaaatatgttttgcattttcctcgtagcttgtggcatattccataaata
tctacaatagtgattagttttggctgtctgaagtttgtgttgtttgttttaattttttgttttgtttttataagttctggaaaaagtcaagttgcatgac
tctcatgatcttccaaagatgtattactaaagcaaagagacattcttacaggtgttttaaacatgagattcagtttgctaatggtggcacctctcactgg
aaagcatttcttactgtgctgtagagggtgactatggatgctggtggcagtctcactttccctagtggctactgaacgtgtttgtgtctcctttagaacc
aatagtttctaatgaata UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 462 136 NA intergenic
1098 chr17 67363749 67364061 RIP_Alu_chr17_067_01 0 + 52865 NA NA SINE Alu Yb8 tctttaaggtcccctggctgaactttaccatggcccagcactgaaagagctttaccttctggaaacttccatgaaaataagccacttccctcattagcat
aattttctaaatatgacaaagcatctcattgaaaacaaaataaaacaaaagacaaagagtattcatctttttcaagtacaattgccgcttctgagtggct
tagtagaagtgttaaaatagcttccatttaatagtttataataacaatagagactaaaatttattcacgtcccatgtttaaggaaatggtaaatattatt
tattcattaactcaatcacctcaaaaaccaccctaaactgaggccatgagaagttggctaacttgttcatgtttaccccactgttAAGAGTCAGAATGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAGTCAGAATGTGaacccagataacctgaatccactacctacaatttaaaatcactctgctatatgaacattgtcactccatatgt
gcaaacatttcaaaagggaaatattcttatcacttgtaggtggggaatttggagcatgaagatattaactaactcatgcaagttcagagagctcttaaat
tagtgaagctgcaagtccatgccagatctgtcagactcaatagcctgaatacagctactaaaaccctacagaggctttgcaagagccactactgcaaggc
cttgggtgatggttagctaaaaataagtggtagtggttatcaattctagtatcatttatgttcttctcttagtcctctttaggagaatttatgagtccta
taataacattgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1120 chr17 70131813 70131814 RIP_Alu_chr17_070_01 0 + 238963 NA NA SINE Alu Yg6 atatgtaacggagcctgggtcatccactttctacttgtccaagtttcctttgtgttctcactcatctatttcctcttttgccttttaaagaatgcttcct
aattttaagccttacttagcagaagagaaagggtggcaagagacgtttctgagaatggaccaagcacaaacaggaaaatctgttggccttcatttaatgt
gaacgtaatgtttgagtcaccccctgagatttcatgactcggaatttcatgaaagtcagtcccagtttacgaaacctctccaacagagaaaactctgttc
cctgcctctttcactcttcttcctatctgggattacttcatcgatctaaggagcttcccttctctatggctgcctacttttgaatcataAAAACACCCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA
CACCCTCtgtggtgatcactccccatgtctttctcaaccgttatctccatgcggatgacttcacacctcttcctctaacccaatatcccaatatctctcc
tgggctccagatcctactttctaacttcctatagggaagctccacctggttatacactgttaacctagttcagtatatgggtcatggtcaacagcataga
ttctgaagtcacacaaactcaaatctcatctccatcatttattaatcatctgaccttgggcatgttgccaaatcactctcctcctcagtctcctcatctg
taaaatagagtactcatgacaattctttctcaaagggttgccacaggaaataaatgagttaatgtaagtaaagtgcttgatacagtgcctggaaca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA promoter
1123 chr17 70551894 70552194 RIP_Alu_chr17_070_02 0 - 238400 NA NA SINE Alu Yb8 acaggctgtcctgagaaagaaaggaaggacaggacaggtgtttgacaactttcttgaagatcctgagaaagactgcttccgcctcccttgcattccactc
caagcttatagagatttttgactttgcagtcttttaatatctgaccctgatcttacttaaagaggactattttcctatattctgactttttttttaagtg
gctgtagtcgttttctgtatttttctcacattttcacatgtgttgaatacctcttaaaatgcaggccgggcgcggtggctcatgcctgtaattccagcac
tttgcaaggctgaggtgggtggatcacctgaggtctggagtttcagcccatcctggccaacgtggagaaaccctgtctctactAAAAATACAAAAATTAG
GGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAATACAAAAATTAGctgggtgtggtggtgggtgcctgtaatcccagctactccggaggctgaggcaggagaatcgcttgagcctgggaggtggaggt
tgcagtgagccaagatgatgccactgcactccagcccgggggacagagtgaaactccatctcaaaaaaaaaaaaaaaaaaagtgcacaacgtgtgctggt
gctgctagggtataatccgatgtgaataagaaggtgcaggtgtattaccaatctagttggaaggggatagcccttttaagtttgtaaaactctggagcaa
gttgctgtgcacaatttcatgtgacacttttagcagccctctggggcaagcaggactgataatgcccattgtacacataagtaaattttagcctagagag
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1130 chr17 71558419 71558420 RIP_Alu_chr17_071_01 0 - Ya5ac2577 GCTTTTTCAGCATGTTTGCTT AACCACACACTCACTCACGC SINE Alu Ya5 acgtctgtggcgaaaagaacttagtgtgatatttaggagaactgtctttttggtgggtattgattagtcttttttattatttccttgtacctaaaagaaa
caatctttgagttgggtcacatttgtaaaaggtaattgtgttggcatacagtagagcttgacaagtttgttctggaaggaaaagataaggaaagttctgg
tgtgctgtgcttcagtgtagagtgtcccaagtccagtctgtaaggcccctcaaggggtgccaggtcctgagcagagggtgaagcgctgcagggaagtagc
aggaagctgtgctgggaagagacgtaaagcctttgctaagtctcagatcagttatgcagacagctttttcagcatgtttgcttttAAAAATAGAACTCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAATAGAACTCCCctttccatatgaataatgaatgactaaggctatgagaaaccattatatggtagagaacagtaacaattaaaatgatatctggt
gtggcgtgcgtgagtgagtgtgtggttgggggactccatgtgcgattttgctcccctcccattaggtgactatggtttgctcaaaggaaagtctcttact
ttgatctgcccttgtttaggctgaaagcgaagaaactaaggagcgcctgtttgaatcaatgctcagcgagtgtcgggacgccatccaggtggttcgggag
gagctcaagccagatcaggtaggaccctcagccgagccctggttcttgctctgggcgggtccaggtcagcctgtgtccccttctcaggtggaccccagtg
ct Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 465 148 NA intron
1138 chr17 72499125 72499434 RIP_Alu_chr17_072_01 0 - 2265 NA NA SINE Alu Ye5 gggcctgaacccttgcttggtcatatgtgcaaaatgtcttgtgcagcaaaggtgcaacgaatgggggcgaaaacaagaagcaatgccttgagcagaagca
gctctgatggccagggcgtgaactagggctccagggccacgctgtctccacatttccaatcctcataggacctgctcctggctaagggcaagaacagact
tgggagaaggcagggagctgccccatgatgggtcccttcctggccaccccagagccgagccggagagttagaccaaccagctgtgtatagccagccctgc
ctgccttctccctgcccacctccactgacgcagggctgtggttacagaatgcaaaaagcccttgtattcctctgttctcacattgctattAAAAAACGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAACAAAAAAA
AAAAAAAAAAAAAAACGCCttgagactgggtaattcataaagaaaggaggtttaattggctcacggttctgcaggctgtacatgaagcatggcgctggcc
tctgctcggcttctggagaggcctcaggaaacaatcatggtggaaggcgaaggaggagtcgacgcctcacatagggaaagcaggagctgggccaggaagg
tgctacacacttttattattatttatttatttattttgagatagagtcttgctctgtcgcccaggctggagtgcaatggctcgatctctgctcactgcaa
cctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgtgtgccaccaagcctggctaattttttatattttt
agtagagac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1145 chr17 73499893 73500192 RIP_Alu_chr17_073_01 0 + 238600 NA NA SINE Alu Yg6 cagtgaagaatatatgctctttagggatacagcgtggtatggatgcagcgtatgcttgaaactcagtccgacctcagttgaatgacgacagctctgtggc
tctctcacttactgtctgtgtctgtacgcagaggtcctctgagcttcatcctctgatcctctccttgaagatgcaggtgatacctgtctcaacaagatcg
atttgaggagcgaatgaagtcatctatttgaaagaccttccgagcccagtgctgagtaaatgacagctcttgctaccattagtttttccaaagactgtca
cttcacactgtctgctgccctagtatctttgcagttggaactcggtatttatggaggattgtttgattttctaagttttatcttAAGATTAAGCAAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AGATTAAGCAAAACCactgggaacgttcacacttggactgtgttgccttggccccccagataattgctgactttttgcaaattccttgagttttcccgtc
atgctttttggctgtcaagaggctgcagaagatgatttaataaagcctaccctggcacacacatgctagcgcaaaaaagaagctgtctagtgcatgacta
cgtcgcctgtgtgaggtacccactaaaataacttacttttagacctgaatgctagggaaactttttcttcccttgtagaacaggtgggtgttcttatggt
tcatgagaatccgtaaaggacagagagaggaattgaatcaaatagtaaaataacgtggcaaattttaggttacctctgagtacgtgttaatccattagt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1181 chr17 78182447 78182749 RIP_Alu_chr17_078_01 0 - Ya5ac2539 AGTTGACAGGTTTTGCCACC CAAGACAGGTAACGCAGCAA SINE Alu Ya5 ctcagctcctgagtggctgggactacaggtgcctgccaccacgccggctaatttttgtatttgtagtaaagacagcgtttcaccatgttggcccagatgg
tctcagtctcttgacctcatcatctgcccgcctcagcctcccaagcattaaagcttttagtatgctgtcttggagttgacaggttttgccacctcttgaa
atgtgaattcaagtatttcatacattttgctgagttagcttcctagggtgttgtgtgctcagcctttatgaaacagtgaacatgatgacagtaaactgag
agaatttggaaacctagcactcactatttttttagccagtcacctttctcatttctgacgatagttagatataaattgctgattAAAAATGAGTCCTGTA
GGCCGGGCACAGTGGCTCATGTCTGTAGTCCCAGCATTTTGGGAGGCCGAGGCAGACTGATCGCCTGAGTTCAGGAGTTTGAGATCAGCCTGGCCAGCAT
AGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCTTGTAATCCCAACTACCTGGGGAGGCTGAGGCAGGAGAGTGGC
TTGAACCCAGGAGGTGGAGGTTGCAGTAAGCCGAGATCGCGCGACTGCACTCTAGCCTGGGTGACAGAGCAAGACTCCTTCTCAAAAAAAAAAAAAAAAA
AAAAAAATGAGTCCTGTAttcccagctacttgggaagctgaggcaggaggatcatgtgagcccaggagttcaaggctgcagtgagctgtgattgtacctg
tgaatagctactgcattccagcctgggcaacacagtgagatcttgtctcttacaaaaaatagaaaattgctgcgttacctgtcttgactttctcttttct
tttttattgtaaaatatacatattaacttgtaacattggtctttttaaaactatcatttcagaatttctagaaggaggagttggccatgttgaaatgtta
tttcgctgcaactatttagctttagttggtggtggaaaaaagccgaaataccctcccaacaaaggtactgtaattgtgtattgaagaatcatgcctcacg
tg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 1018 713 NA intron
591 chr18 827118 827419 RIP_Alu_chr18_000_01 0 - 19444 NA NA SINE Alu Yb8 ccattttacaaatgagaatcagaagaacagagatcaaaggactgagaatgtgagcctaggtcatctggctgtaaaacctatgttcttggtcaccagtgcc
atgtggcctctggtgactgtgcctgaagtgccacttagaaaatagaagctctctagttctagatccctgaggaatcgccacactgacttccacaatggtt
gaactagtttacagtcccaccaacagtgtaaaagtgttccagccatcccattactgggtatatacccaaaggactataaatcatgctgttataaagacac
atgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattAAGAAAATGTGGCAC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAGAAAATGTGGCACatatacaccgtggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacgtggatgaaattggaaaccatc
attctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaataatgagatcacatggacacaggaagggga
atatcacactctggggactgtggtggggtcgggggaggggggagggatagcattgggagatatacctaatgctagatgacacgttagtgggtgcagcgca
ccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttagagtacaataaaaaaaaaaaagaaaatagaagctc
t UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
594 chr18 1225790 1225791 RIP_Alu_chr18_001_01 0 + pAlu18-1225790 NA NA SINE Alu Yc2 ttttgttcattcttattcttctgcttctttgtactaaattagtgttttctagattatatatgttacaaacctaatgatatattgttataattattacttt
gtacaactttatgtcctttaaagaagctgagaaaagaaagaagagcaattaaatatttatgccttgttatattaacctttttagttctcttcatttgttc
cagtgaattccaggtactattggtatcatttaattattccaatactgttttgctctaattcaccttatttgtgatattttctaatatatcacatttctat
gtgttacaggcccaataatacagttatatacatattattcatatgattgcttttaagtcagttaagaaatttgcaaatatagtttttaaaAATAATTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGAAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATAATTACAtaaacaagtacttttactggcactctattttatcatgtggacttgaactatggtctgagttcactttcatttagaa
ctttaatgtttgttacaaggaatatctgcttacaacaaattctgtccatttttgtttatttgaagatgcttttatttcactgtcattttttaaagttagt
tttcttggatatatgattatttctcgacagggtttttttttcctttcaatttattactttactttgaatttgactttccactgcctctgtcctccattgt
ttctaatgagaagtcagctgcaaatatttcaaagcaaatattaaatattaatattaaatattacagtttacttgaagtgatgggttgtttttctcttgct
gttctcagaatttt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
656 chr18 9375404 9375715 RIP_Alu_chr18_009_01 0 + pAlu18-9375306|7480 NA NA SINE Alu Yb8 gggggttatggtgagagtatgagtgacctttccggctaaaccccaaagaggctccagttgcagctttatggagtgtgggtgtgagaaatgaatttgaaaa
tagcgagattatttgaagatctgtctgtagaacagctgtatgatttgataaccaattccctcctccattcgtcagaaaaagttccaagtaattaagaagt
ttctctaggaaaaagaaattggagaatttctttctagagaaattgaagggaactagctgaaaagaagtagggccactgatgtgttattggtacccaggca
aggcctcctcattcaggcattgtagggagggaaggtgtctccagcctaatgactagatgcgaaagaaaaatagaataagtgtagcttAAAAGAAAGAACG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAAGAACGaagtaaaaagcagaccaaggaggaaatatttaggacataaaagaaatcttttaaaaactgattgttatcttttaga
aaaagttaacaaagtatcatgtctgtattatgaaaaacaatcagaataagaaagcttttgcaaatttaaaattcaaatggggccgggcatggtggctcac
acctgtaatcccagcactttgggaggccaaggcggatggatcacctgaggtcaggagttcgagaccagcctggccaatatggcgaaaccccaactctact
aaaaatacaaaaattagctaggcgtggtggcgcatgcctgtagtcccagatactcaggagactaagacaggagaatcgcttgatcccgggaggcggaggt
tgcagtgagcc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
676 chr18 11961929 11962237 RIP_Alu_chr18_011_01 0 + 15175|Ya5ac2613 TGGGGTTGGCATTTTTCTTA CTCTGCTGCAGCGTGTCTA SINE Alu Ya5 ggacaaagaatccagttttaaaatacgagcgggcagagccggggactgtggtgcattcctgtgatcccaaatactgtggaggctgaggtaagaggatcct
ttgagcctagcagttcaagaccagcctgggaaacatatggcgactctgtctccaaaaacccaaaatcaaccaaaacaaaacaaacaaaacaaaacaggca
ggcaggagaatttgtcagtatatttccacctccatttatattcaatcccaggaaccttcctcatgcaggcagtgagatttgaggcgtaaattaccctgaa
agtgggagtggggttggcatttttcttaagaactgggaacaaagcatttctccttgggttaatgctgacaaacgaaataatgcaattGAAAAAGAAATAA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAAAGAAATAAtacggatacggcagggggtatatgtactttccccttaattttgccgcgaacttaaaagtatagaaaaaaaatagacacg
ctgcagcacagcctgtgtctctcctccgccccgtagacggaagtgcagaggggctggagggacgaggctagagcgcggcaaagcaggcgggagaactaga
tcccagtccaggtgaacatccaggcccacgcgcactcccctcctgcagaggcaaaggtgagggtgagggttgtgccagaaggtgacttttcctggaaacg
tttagggcccgggccgcattcctgcgggtcttgggtacaggcaagctcctggtttccttcctcaggacacctgcatcgggggagtggcgcggcagccgaa
gagagaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 496 182 NA intergenic
682 chr18 12841196 12841511 RIP_Alu_chr18_012_01 0 + pAlu18-12841099|3347|Yb7AD188 TTTTGGGGAGAAATTGACAAA TGTGCATTTTCTAATTGCTGGA SINE Alu Yb8 ggcacaatcttggctcaccgcaacctctgcctcccggattcaagcaattctcctgcctcagcctcctgagtagctgagattacaggcatgcaccactatg
cctggctaatctttgtatttttagtagagacgaggtttctccatgttggtcaggctggtctcaaactcccgacctcaggtgatccacccacctaggcctc
ccaaagtgctgggattacaggcgtgagccacagcgcccagccaggcattcttaaattttaagatttacttgacagcctagtcaatggtccattttttaca
aatagaccatgtcagtcctagaaaaatgtgcattttctaattgctggatatagggttctatgtatttttcttcttatattaaggttAATAATATTATATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAAAAAAGAATAATATTATATAaatctatttctttacaaatatcttgtcttattaagaagcccatgaacatggatttgtcaatttctccccaa
aattctattcatttttgcttaatacatcttggggctactttattagctgcatacaaatctcagagctgatactgacatctgcattcaaagtagttatgcc
atttgctaagatcatgcagggagcgtgccgaaagcatagaagttttcccttccttcttccccctctagtaactcatttaaaaagtatgtttatttgagaa
tctttttgttttgtagagcaacaaaccatggactatgtaacctgacactaccagaatcatgagtctctgtgttaatttcctttaaaatctgactgtttca
catggatgaaccttg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Trace comparison|Genome comparison|Candidate screening NA 60 0 0 NA intron
694 chr18 14364633 14364940 RIP_Alu_chr18_014_01 0 - pAlu18-14364531 NA NA SINE Alu Ya5 tgaattactgtttcaggtgttcatctgctacaacaaacatttatcaaacacctagtaggtataagagatcatttaaacccaccccaaaggatacaaagtt
gaggaaagcactctttgcctttgcagaaatcacaatctattatcaaagcatatgatagaaatttcaatatctaaaacacaaaatctaaagtgttaagtgc
catgagaatgatataagagtttaagaagggagagatacaacaaagtttgggcaagccagtatgtttcttgaaggaatagcacttaatttgtgatgtgaag
ataaaatctcagtaaagaaaaatggggaagaagatggtaagcctggcagaaggaatattattagcaagtgcaggaaaatgtactctaatcAAAAAGAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATCCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCTGGGCGACAGAGCGAGACTCCGTCCCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAGCAagtagcctaatgtgactggatttcaatttacctttacatttttctatcatgttatttcatgcccataaattatggcaatagtc
taaatgaacttgaatatcagaccaaattgccttgtcttatgtagtaacccactcaagtttctaagcagaaaataacctgacccccattctctgagatttg
agaaaaaaattgtgtatccttcactaaagtttggaatgcattttggaaggaaagaggaaagcagaatgaatatgtcctgaccacgtgtattactcatttg
ctctgaaagccataccctgcccctttttctgctcagctctgaatgttagtctcacaattaggtttagctaagtgaaggcagaggagcaggcatccaaagg
gtggaag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
746 chr18 21146492 21146802 RIP_Alu_chr18_021_01 0 + pAlu18-22780386 NA NA SINE Alu Yb7 ttacagagaaatgtttcttatattaccctttcaagatccaaactttttaattttaataagttaattaatgtaatagatcatcacttatactgggaaaaca
tattcatcagtacagacagtcctttcataaatcccaattacaatacccacaagcattcaaagagctttgagaaaataacagatctaaaaataattatttt
atatccatgttttgatagcgaattttacaaatatatcaagaagagaatggcagaccaggtactaatattcaaaaacttctgctgcagcaaaatcaatgtg
gaaataacaaagcttgtatactaggtaatgattgaactgaccttacctccaaaaccggaaaaggaagcatactcagcctatggttcAGAAGTTGGAACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAGAAGTTGGAACCAactatagatgatcactttgtctttggtaactgcatggaagaacttggtgggagccctgacagttgaacaaagtgac
acactcagccccaccactttctctaaaactgagaggagcaaagatttggtgagccgtttttcacctcatgaaataagtgatagtcaagaacagtggtctc
tgaaatacagggtacattatcgtgcaggagagaggatactctgaatagtcagaaaccaatcagaacggacaccaatcagaaatagccatccaggtactaa
ccagaccttcctgagagcaaggagataaacagtactccagtcagctgggtgggctggcttctccagccccttttatcccatctcatactaatgcagtcta
cagtgtccag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
768 chr18 24081890 24082207 RIP_Alu_chr18_024_02 0 - Yb7AD39|Yb8NBC80|pAlu18-25715783 ATTTCACAGTGCCCTGTCCT TCCAGGCAGATGAATTGACA SINE Alu Yb8 ttttcaaagaaaaaaattattttgagacaggatctcactctgtcacccaggctggagtacagtggcaatcatagctcactgaatcttcgaccttcctgac
ttaagcaatcctcctacctcagaccccaaggagctaggactgcaggtttgtgtcaccacatctgagtaatttttattgtttatatttttagaggcgaggg
tctcactatgttgcccagactggcctccaactcctggtttcaagcaatcctgcctccttggcctcccaaagtgccgagatttacaggcatgagccacaga
gccaagcctttcaaaattttttatctgatttcacagtgccctgtcctgataatctagtaatcctcagcatgaactcttggctgtAGAAAAACTTCATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGCAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAAACTTCATCTTtttttttttttttctctgctaccacacacctgtcaattcatctgcctggaatgatctctctggaatt
tttctctaccttacatcatttttctattttaaagctcatcattctcactctgtttatttcaacctacacaggttcttttcttacatgtactcctataata
gtccacaacttctcgtgtatgtacattctctactgtattgttttccaacttttattgttacctatattattaaatcttcagtcagacgagatgttgcttt
aagtgaaaagaactcttacatttttttgtaaacgttccacaacaccccattaatgctaaacatatagatatctcattttgaatattgcattaatgaggaa
gtcatgcctagtttatt UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Candidate screening|Genome comparison NA 60 0 0 NA intergenic
769 chr18 24125817 24125818 RIP_Alu_chr18_024_01 0 + 2606 NA NA SINE Alu Ya5 gcaaagtcagcaacaatcaggagaaatgctctttctttaactgtaaggagtacataagcttgaaattactgggacctgtcaaatggagaaagtccgtctg
taaagtaaaacaatacaatcaaagaagagctaggagacaaaggaatagctgatcactgataaaatagttaaatcctcaatttagccatagttgttctatc
atttaatttgtaaatcaataaatgcatgttattttgtttaaaatagtgggaattcttttgttatgtaaaaattagagaactaaaatagaaaagaaacaca
aatttaaaaagaaaaataataaggacacttgcaagagaaataaaaaataaagtcatttctctttgtgtgtaggttgataaaaataacagAATCACATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAT
CACATTTTtaatcttcaaattttctgttcagctaaatatagttaagaatacaataattataactgcagccaacatacaaatctgttttttgagaaagaag
acaagacttatattaagtaattgaagagtgttctggaaatatcctcaatgttctcaaatttttaacagcaagggcctaagacatgaggaagaccatgtgc
aagattgggactgcaactcctggcagataagtctttccctgctaatattcttatgctatagtagaagtcctggaagacacaactcatttctcattttctc
tttatgtaacttttgactttttttagtctttaacatcagcattaattatgttctagtataaattattgactccaaactggggcaaggaggattaaag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
772 chr18 24617756 24618064 RIP_Alu_chr18_024_03 0 + pAlu18-26251650 NA NA SINE Alu Ya5 tggttcctgcttttaaaatagagggctaattttagatcataaaagtacacccctgaaaacaagatatgattttttaaatgtggcagaaatatagatataa
aactttgatgttcagtattttagactttcaaggatctcaacatttgggcaaaagatgcagaggtataaattttaaaaaatttttactttcccaaatagtt
cttaaatgtctgcttgagatgaagcatatttcagggtgtacattcagtagcttattgaaccttttaaaatttaggcatattgagtttttacaaaatttct
cagtatattaggaaatactcctctaaaggttgggaaagtagtttttagaagtagatgcaatgacgggagaagttaacagtccttcaaAAGAAAAGGCATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAAA
AAAAAAAAAAGAAAAGGCATTtaaaactgaaagataaacatagaaaagtactatgaagacagattttctgtcaggtgcagtggctcacacctgtaatccc
agcactttgggaggctgaggcgggtggatcacctcagatcaggagctcgagaccaacctgaccaacatagcaaaactccatctctactaaaaatacaaaa
ttagctgagcgtagtggtgcatgaccataatctcagctactcaggaggctgcggcaggagaatcaattaaacccaggaggtggaggtttcagtgagctga
gatcgcaccactgcattccagcctgggtaacaagagcaaaacacagtctcaaaaaaagacagattttctttctttttaaatactatatattattccattt
tgtatgta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
782 chr18 25883688 25884004 RIP_Alu_chr18_025_01 0 + 238589|Ya5ac2585 TCTTGCAACCTACATACGCC TGTGCTCACTCTCCTGACCA SINE Alu Ya5 gtagcttaattgtagccagtatagagattgaaaaattgtctagtaatagataacaaatacatagtaattattattcatcaggcactcttttaattgcttt
acacatatcacttttttcaatctttgccaactgatgaaaaaggtgttattattattcacattttattggtgataaaactcacaaagttagtgtgacttac
ctaagcgtcacacagatagtttattaaataatgaacatttgagaaccggcagtccatactcttaacactctgtcactacaccctctaagaaaagtagtct
tggtcaccatatacactcttgcaacctacatacgcctatgttatgccagattggagacaattttgttcagtatatgaaaataagaatatcAAAAGTGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGTGAGAaaactatgccaatattacaccaacagagccataaacttgggggcaagatcagaaaacatggtcaggagagtgag
cacaggcgttgtgtggcaaaagaagtcagccctacctgagcccacaccaggatatcccctactattcaaatcctcacaggagtccggttttgcctttatg
acactgtgcttgattgtaattgttcgtaaaaatatgtgcataataatgtctaatcatttgctaaattgtattttcaggtagaatactatgcctgacacat
tagaagtattcaataagtactttcaaaggattccaagttgaatactcaggaaaagggaaactaaacagaaaaaaaaaattataagcaattcctaaaactt
tgcaaaagacaaatta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 488 161 NA intergenic
812 chr18 29787207 29787208 RIP_Alu_chr18_029_01 0 + 3640 NA NA SINE Alu Y accgggaggtggaggttgcggtgagctgaggtcatgccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaacaaaatgttctaac
atgacagagtttcacattatcaaagccaaaattgaggaagactactctaggagcaaaggcagatttatcataaagtcaataaaagtgaggcataggatgc
ctcaattggatgagcctcttaagtgctggagttcctggatgttgtaagcattctaggtaggaagggaaagccactttaaaatctggaagcatttatatgt
aagtgtgtctgaaaattgtctaacgagatgttagaagaaaagcgttttaatcttcaagatttcagtggtttctaaatttctttAAAAATATCCTACACAA
ACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA
GCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGAT
CGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATATCCTACACAAcattttttctacctaa
ttttttgctcataattgtgtattacttttcttttcaaaaagatctcaagtcatataatcttcaggttttacaaaccctatttctgcctctgcctaggcat
aatgtgtgtgaagagggtaagaggaaagtagggagttgagttaggattatgcaagagtacaggtatgaggtatgaaagactagaactaaaataagaacac
ataaaattggaaactgtaagatttatttgggaaacagaataaaggaggaataagcagaattcattaagtggtaggatacaagacacaaaaatagtcaaat
ctcattctacatttttgagcaatggtaaaaatgacaatatggtgctattaacagcaggcaagtcaag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
813 chr18 30000717 30001040 RIP_Alu_chr18_030_01 0 + pAlu18-31634611 NA NA SINE Alu Yb7 atgccactttaaacaatggatcttgtatctggaactgaagtaagtaaacagactttgtctagaagagggaaaaggagaactgaaaggtatttgtttttta
cagaaagtagataatgtgaaaatttgtctatctccattttcccaaagtcccattatcaaagatctatcatttgaactggagccaatggtaaatgtccata
aatgcaatcatgtcactaacacaatagaaaaatattaactaaagctcataaatttataacaatcatgctgtaactttaacaaatatggaataatttacat
acagttgaccttttgggtctgcaagttctgcatctgccaattcaaccaaccatggatgaataatatttgggaaaaaataaaaatatAATAGTAAAAAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATAGTAAAAAAAAatatatagtataacaactatttacaaagtctttatatcatattaggtattataagtaacctag
ggatgatttaaagtatacaaagggatgtgcataggttatatgcaaatactagaccattttctatcagggaattgagcatcacaggaagttcctggaccca
atccctaatggataccaagggaataccgtataacgttcagttcacctttaaaataagtcatctttgatttcttacacctcctacatatccagttactaag
tgttaattgttaaacacttctctaatctgtcgatacttgcttgtatctctggcttggattacttattcaatttactacttcttctacctgtttcatattt
tggccccttcattcttctcttag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
820 chr18 30915970 30916272 RIP_Alu_chr18_030_02 0 + pAlu18-32549864 NA NA SINE Alu Ya4 ggactggggagagtggccataagtatggagttctcacctgcaagtcttggggagagggtgaaatggctgaaatctggggaagaatcctggagcttctagt
ctctagtgccagggatagtgacctcagcctcaaaatgagcaacttgagaaaggggcgcattgtgtagacgtggaccgtgggtttgcgctggtccactcat
accagtatattttaccttatactaaaagcctctctgtgggctgccatacatagagttcatgtagtggcctggcctgtataactgttgatagtatgatgtg
ggtaatggttcagtagaaattctctgagaaaatggggaaagggatcagctttaggtttcttacttgcaatttaatttgacctaaaAATACATACGTTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATACATACGTTCTGaaaattagaacttaaaaatggcattctctaaagacgtttgtgcccagaaatcagcattggtttgcctaccaaattagttaagc
ttcttcttttcctggcatttaaagccttgagcaatctagctgcattccacctttccaacatttatccccacagcctccctacccataacctgtatttcct
caaacgcacgtttcacttatatgccctgattccttgtctttgcttggagtatctcctttgaaattcatatcaaatgccactttgccctattcttcctgat
cacattcaacaaaatgtgagctctctctctcttttcaatgatcagacctttacaaagccttacgctcattgagtacttgttttaagtcttcagcattcgg
ag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
850 chr18 34766544 34766545 RIP_Alu_chr18_034_01 0 + pAlu18-36400538 NA NA SINE Alu Ya5 tttgagccctgtaatctttttacaaagatcgacccatgtgattcttatgagtgccccagatgagagccaaggccctaaaggaaaagatggctaacatgac
tggattctccaaaaaagtatattgtcattgacattattcatcacatggctacacaaaagtcaatgtcaaaattatttttagaattcggggctagaatata
aaataatatgtacagtttagctattacctatctactagacataattaaacattatacacttgaaaaatatataccaatacttttttaaaatgtgcttctt
tggtgttcagattataagtgattttcaatttattttaacaattataagtgattgttcaactatttacctcagtttcaagaaatctcAAAAGCAAATTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGCAAATTTGAaactcaagtcatggcaactagatagacaagttttaattcatattttgtcttccccttatcattgaagcagatttttaaaaat
tatacattattatttcaagtatacattttagtataaatttctttactgccatagtgtaaaacataaaagaaaagaacagaagagaaggtgtaggggcaat
gaataaagggaaaaaattatgtctcaaaaaggggaggatgaaaacaaggggaaagaaaggaaatgagacggcaagaaggaaagcatagcaggctcattca
agaggaactcctctgaacctgctgctatcatacattcagaaacacctgtgtttggaaatgaccaagtcattttcagcccaagtgaggggtgcttcaagaa
tgag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
854 chr18 35315644 35315961 RIP_Alu_chr18_035_01 0 + pAlu18-36949538 NA NA SINE Alu Yb7 catataatataaactggatagataatgtagttttttttttcttaacttcctggattattaatttaaatgtgtcattttgagcagattgcgagctactaca
ataaagtttgagagcaaggctgagtaatcatattgcacaggggtctaatggtaaacagggacattgagaaggaacatggaggagcaggggccaggtttta
atggagccacttcctcagcgtgtgctactcgacctagtttctgcttcatacagtccagcttatgcaactaggtaaaaagcaggctgtggatgaaaaccag
ataatgtttctcggttgagatttccacagcaaataaattatgaaattaaaaaagataaatgctcacatatggattgtgcaactcataAAGAATCAGATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATCAGATTCatagactgttaggtttttatgcacaactatttacattcaattattcagtcaatgccatggagacagggtt
acaagattgaaagatgaatattttctgttacccgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaacataacaagaaact
gctacctggatatcaagaagcaatcatcttgcagttaatatgaaagataaaaacaaaacaaaacatatcttcatcacagctatccaagcagaacatcaat
gactaaacaaatggcaagcccaaattaaatcaaaaggcaataacaagaaaaagagtgtgggagccatagatcattgcacagggaggtcagtgagctctca
aagcctgaggagatgac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
870 chr18 37441995 37442319 RIP_Alu_chr18_037_01 0 + Yb8AC1789 GGGTATGGGGCACATAAAGA GCTGAGAAGAAAAGCAAAGAAAA SINE Alu Yb8 attattttgtatttctctcttatttttaacctcccctatattttgttgagcaaattagggtccatcagcctggaattttcatacattcccacatccaaat
ctttcaaccttcctacataaatattcttctcgccatttttttcctctaactcaggtgattaagtttctctcctctaccaaggggactcgtcatatgtgct
ctgcatcacaaatcccctcaccttctcaagggctttgctttctcaattgccccctttctctcctacatcaacttctctcttttcaccaaattgttcatat
tttccctgccttcttcaccacctctgggtgtgtgtgtgggggtggggtgggggtatggggcacataaagataatccttcgtacattTAAAAATAAAATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
ATAAATAAATAAATAAAATAAAAATAAAAATAAAATTAaaattaaataaaatctgcctcccataactttagagtttcctacaaactacagtacattttct
ttgcttttcttctcagctaaacctgtgaaaagaattgtctgacatgctgtctctacttcttttttatgatttttagagacagggcttcactctgtcaccc
aggctggagtgtggtggcacaatcattgatcatagccactgcagcctcgaactcatgggctcaagtaaccctcccagcccagtctcccaagtagctggaa
ctacaggcatgcaccaccatgcctggctaattttttcccttttttttttttttttttttttttttccataaagacagggtctccatatgttgcccaaggt
ggacttgaactctgggactcaact UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 467 135 NA intergenic
887 chr18 39707440 39707753 RIP_Alu_chr18_039_01 0 + 3902|pAlu18-41341334 NA NA SINE Alu Ya5 gcacaccagcatggcacatgtatacatatgtaactaacctgcacattatgcacatgtaccctaaaacttaaagtataataataataaaataaaataaaat
aaaagttagcattaaaaaaagcaaaaacaaaaacaacaaaaaaagaaaagttagcataaaaaaaaaacaaaaacaaacaaaaaaaagaatacctacattg
ataatatgcaagcggttattgaaacacaattgtattgatgacggtcttataaaagatcagaagaatatataaaactataattactaaaactaattggtct
ggcacatataaattaaaaaaatttttagtttagaaagcatagtaataattttgtatattataaacttacattagctaattaaattAAAAAATGATGGATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATGATGGATCggccgggcacagtagctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcag
gagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctac
tcaggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatcacgccactgcactccaaaaaaaaaaaaaaaagatgg
atcattaaaaaataaatattggtaaatattgggtcaattgttatcatttaaagttaaaaaatatctttaaagccaaatcaaaaaaacctagaaaacatta
tattatctcaatc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
909 chr18 42592431 42592753 RIP_Alu_chr18_042_01 0 - 31575|Yb8AC1796 GCACGTTTTTATGTGCCAGA CCCCTGTGCTATCCATGAAG SINE Alu Yb8 tacctcataatttggcccagtgcaaagagaaatgcaaacccccttgttcaaaagtttgaagacagcaagagtggagcaatcagtcaaaatcaatggtggt
ggtggggacaaatgaacaagtcccactcccaagaagccagcctgcctgtgtgtgtgggagaaagaacctcatctcagaatcccaagacttgttgctaggt
gagttactttgggcatctgttgctttagtcctttcagctgtaaaatgggttagccaggggctaggaggtgaaaattcattaatatatgcaagtgaagcac
gtttttatgtgccagacagcaaacaaatacaggaattattataataatgggccctctaaatgttggagtttttctttaattggttAAAAAGCCTACCTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGCCTACCTGTgaccttgcagagaaatacagaaactcttcatggatagcacaggggccacttctgccttatgaa
ttaacacaaatcccgaattcttggtggaacccttatcatgagattttactgtgcattatttgatctttccagttcaaagaagaaactactaaatgccaag
gtcgagagtattggagtctgggcacttcccccatcaaagttcttgtgctgaggtttgagtttcggtcaggttcgctgttgaatccctggcctgactctag
aacatcccggagtgcctgctggaacctgggaaggggcaccctagaatcttccaaccggcctcagtggcgagcgccgcgggcacacgactcccagcgcttg
gagcctctgcggtgttaggatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Trace comparison|Candidate screening NA 60 485 152 NA promoter
915 chr18 43353906 43354204 RIP_Alu_chr18_043_01 0 + 14275 NA NA SINE Alu Yg6 tcccttaccagaggcaattgccatctgaatttgccctgcccttattaaattataatttttattttgagaaattataaaaattcagaaagtaccaagaatt
cctaacaaacacctgtgtacagttgtatagcattgatcattgttaacaagttgtcctgtttgtttctcattaaataaagtaatgagggcattacagataa
agctagagctgtcttttaattgctggccagctcactccactcccaggtgctcagctgtatttctgcagcaaggtattagtgtatcctcaaatgacaacta
taaggtcagccacttagctgacaccaggccccagagggtatagcagagattctcatgagcacatacctccaagaaaaagcagatatAAAAAGTAGCTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAGTAGCTGCAatctagcatggcccaattactttatggaatcattgaccttagttgtggaaaggccattagaaatcagttacaatggaggccagagagg
ctgagtgactgatatgaagtcaccagccaggtatgtcagagcctggactgcacctgggtctcccatcaagcactgaattcaaggtgagctcagttgccag
ccgtgtgaatcatctgaatcatgatacgcttcacgctagactttccaggataagtgagtggaactggggattgagcttcctaggagtggaaggtaaagca
gaaagccctttcaggttgttaagaaacatttttcaaatatctgggtccacttcccttgacaggaagtccctactgcttgacatcacacgtctttcttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
922 chr18 44250158 44250458 RIP_Alu_chr18_044_01 0 + pAlu18-45884052|79823|Ya5ac2608 TCGTCTCTACCTCCAAGGAAA TTTTGGCTGAAGTCCACAGA SINE Alu Ya5 gaaagaaagagagaaagacaagaaaagaaaagaaaaggaaagaaaggaaggaaagaaagagatgtattattccaatcaatattcctgggggagagttacc
accacaaaaagataatacttaggcaaattaaccctaaattggaagtatcacaacatattttgatccaagaaccccagatgtactatgttaaatactcctt
ctttcctgctgtgtctcgtttgtatgctggaccagatagagaacaggaatgtgtaacactattttcattccattccaacaacaaaaaatatcaagcattt
cctactgctctgacactaaataattacaaaagacacaaccatgtacagagatgtcgtctctacctccaaggaaaacacaatctAGAAAATAGGTATCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAAATAGGTATCATGggtctaaaaggaaaccaaaactgaaatgaaccaatctttaaaaataaagcaacataagagccttatctaccaaaatctgtgga
cttcagccaaaacggaatttaaagataaattcatagccttaaaatctatatattagggccttagaaagaaaatcaactaagaatccaactcaagggcaat
gtggtcatggtggcagtaggtttcccaatctccctataacctctcctgacaaccaagtagagcagataggatgcagccccccaaaaacccaccacctcag
ccaacaacaacaaaaatcccacctctaacctctaacctcttcaaccaaattaggtgacaggagacctatcaaacctgaggacatggacaaatacgccaaa
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 60 459 142 NA intergenic
930 chr18 45273866 45274171 RIP_Alu_chr18_045_01 0 + pAlu18-46907760 NA NA SINE Alu Ya4b atttcatggcaccacccttctaggcagctcaaactctaggagagtagactccaggctaggctcacttgcttccttgacctcagtgtaggagacctcagcc
ctaagtctctcccctcgactccacttccattgctgatgctggattccatggtgtttcctcggtaattccctcccctcacatgagctttcaactgcatgct
aactcccagattaataccccagcgccacatctgtctcctgagctagaccctgatagcaaactactccctggacatcctttctgggaggtccctgaagacc
tgaggttatttgaaacctaacatgcccttaaacagaactctttgtcttctcctccgggttcctcttttatgttgcatggtgacAAGAGTAACAGACAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAGTAACAGACAATGattctataagcttactagattctaggcagtattttcagtgtttttacatgcatttcctcaagtaatccttaggacaac
tatttgtaaatgatgaagttgatctggctgctacaatgtgaagaagaaaaaaaaggaactccccggcaaatccaaggtccggcagctgggagtggcagcc
ctgggatccaaggcagccttctgtaaccaagctctgcatccctaggcgaccctgcctttctcccttccttgtttggcgacttccccatacacctaggatc
ttaaaccagaaagatgagagactcccctcttcttgtctttgcacatacaattatttaacaaaatctggattattcttttaagtggtcttcttgccctaat
tattt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA promoter
960 chr18 49179990 49180298 RIP_Alu_chr18_049_01 0 + Ya5NBC244|Ya5ac2596 TGCAAGTAACAAATGCCCAA ACAAGCACTGCCCTCTGATT SINE Alu Ya5 ggtttatcccttcaaggtgctaccatagtaattatttgactccaccttttttatttccttgtatgtagattcagtgtcacaaaagagagaatattattgg
catcttttgagacaggtgatcacacagctaaggagaagatgggataagaccatggaattcccaactgatattgctaccaagctttcatgatatagaggag
agcttgttttccaaagagaaaaaacaagtcctcctttaaaaggaagaggagaggatgggatgctggacagtgcaagtaacaaatgcccaatacaattcct
atggctgaaatcttctgaaacttaaatgttaccttccattcatgtacttaataaagaaatggaagtataggaaaaaatgagagccAAAGAAATCAGAGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAATCAGAGGGcagtgcttgtctagtggaccaagatattaattaagggtttttaataatgttaatttataattgtcatgccttgagat
acgaacttggtaaggagaatatagtctatgtctttgagcgaattgtggtccaataaaaaagaaaaagcatttttttaaattcctgaagtaatatcagaaa
tataatcataaaattgtggacaagttaaaatcagagcaaacaaagtacagattctgtctggaaaaataagaggaagtttcacaaaataaatgaggtttga
gctatggcttagttgaattatcacatactaattccagggacttccaaagaatggaaaactcatgtgcaaaaatacccaagcaggtgtcagaaagatgatg
tgttaaag UCSC - Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Selective database search followed by genotyping |Candidate screening NA 60 453 130 NA intron
988 chr18 52857191 52857192 RIP_Alu_chr18_052_01 0 + pAlu18-54491185 NA NA SINE Alu Yb7 atccatagtgtacacacgcccgcagcccctccttctgatggtttaacttggagcaatcctcaatggttgtgcatagccagatacacgcactgtgcacaca
ggcactgggttctgggtcacctccctggcatcccaggcctctgtctgcttccttcagtgcttccttcttcagccgtccctccctggatcccagccacctg
agctccatccatccctgatttcattccttttttttcctcttccagctctagtccacagccttcctccccaggacatgtgattcaagcctgaagcatacaa
tgggagcacaaaggaggaggggacagagaaaagaaatgagcatcagccttgggaatgtctcctctgactgtagagtcaggagacattAAGATGAACATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGATGAACATTCactggaacatatacattctggtagattccgatgagaattaagcccattcattcatctggtaaatatctagtgaacatctac
catgcatcaggcagagaactaggtgctgggattgtagtggggaaggcaacagttgtgacacctgcccttatgggctcacagtctagtgggctggggtggg
gactaagccagccacaaattgtaacatgagcagtgatggaaacaagggcagctgagacccaatagcccagggaaggagtgggcaaggtcaacccggggtc
tctgaaggaagataaggagctggatgttggtggagcagttggaagcgggaagagcttctagagaagaaaatagcacgtgtgaggtccctgaggcagaagg
gagagt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
993 chr18 53496937 53497152 RIP_Alu_chr18_053_03 0 + pAlu18-55130833 NA NA SINE Alu Ya3 cagggcacggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacaaggtcaggagtttgagaccggcctggccaacatagtg
aaaccccgtctctactaaaaatgtaaaaaattagccacgtgtggtggtatgcacctgtaatcccagctacttgggaggctgaggcaggagaatcgcataa
acccgggaggcagaggttgcagtgaaccgagatcacaccattgcactccagcccaggcgatagttcgagattctatctcaaaaaaaaaaaaaGAAGAGAA
AAGAAAAGAGTGTGGTGTTGATGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAATTGACCCGACTTCGATTCCCAGCCAATGCAGCAGGCTGACCTTT
TGTCCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAGCCAGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGC
TGAGGCAGGAGAATCGCATAAACCCGGGAGGCAGAGGTTGCAGTGAACCGAGATCACACCATTGCACTCCAGCCCAGGCGATAGTTCGAGATTCTATCTC
AAAAAAAAAAAAAAAGAAGAGAAAAGAAAAGAGTGTGGTGTTGATGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAATTGACCCGACTTCAATTCCCA
GCCAACGCAGCAGGCTGACCTTTcgtcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaaaattagccaggcatggtggcgggtgcct
gtagtcccagctacttgggaggctgaggcaggagaatgcatgaacccgggaggcagagcttgcagtgagccgagatcgcgccactgctctccagcctggg
caacagagcaagactctgtctcaaaaaaaaaaaagaataaaaaagaaaagaaaaactaactattaagttctgtgttcactacctggatgatgggatcaat
tgtaccccaaacttc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
995 chr18 53822134 53822426 RIP_Alu_chr18_053_01 0 - Ya5ac2617 TGACAAGCACAGGACTGACC ATTGGCTGATTCCAAAGCAC SINE Alu Ya5 caatagacttatatttaacatactttgcttctgcccttttctttcatttgatgtttgtgggaaatatttgtggtgagctagaattaaaagtctatacttt
ttcattggagcacttggtcagagcagagtgctcataagatttagatcaaatgtgtttgatccctaccagcccagaacctggaacaggctactatcccagg
agagctaatcatggccacataggatagtggacaagagtcagggggacctcaggagccaggagactccagacagtcagcttaaatgtcttgctttagaact
ttcatgtggcagcaaccttttattcaatgtctattcatttgtccctgattagtgacaagcacaggactgacccattgtagctgtttAATAATAATGTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAATAA
TGTTTGtgcatttaaagacgctgtgctttggaatcagccaattttgcagggcggaggaagaaaggaaactggtttgccatctggcatttacaaaatggga
aacaaatgcattgactttttcttcctctcaaaacttcacaaaaatggcaataaagagactgttttctgaagacataaacccataaggatgaagagcattg
aagagaagataacagataacaatagaagataaaaatttccaaattttgaaaattggagaaatgcttataaagcggcttagcagagccaaaaaaactgaat
tcactcttgaacctgggaggtggaggttgcagtgagccaagatcgtgccactgccctccagcctgggcaacagagaaagactgtctcaaaac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 390 84 NA intergenic
996 chr18 53952590 53952901 RIP_Alu_chr18_053_02 0 - pAlu18-55586484|14586 NA NA SINE Alu Ya4 aaaaaagaaaatgtgaaacccttgatttgaggcactaaagggtatagtccaattatagaaactctaatgtcactctaaggaaaatctaatgtccttctag
aatgttccttcgctttccattgaccttaaacctgaaaggttttacttaaatccctcctactccatcaccctttccctcactacttcacactgtactaaag
gtcttcctttgtgaatatccactgtaatcacagtcagtagctcccaggttcctccccttcattcgcctcaggttccctgaatatcaaaaaaaaaaaaaaa
aatgaaaattgcttgaagacaaaagaaaaaagattaaaagaaaaaatagaaggggaaaaaagaaaagaaattctgattttcacttAAGAAATGGAATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAATGGAATTGCtttaactgatttgggtgacaaccgacagccaaattaagaatattaggccaggtgcggtagctcatgcctgtaat
gccagcactttgggagcccgaggcggatggatcacctgaggccaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaataca
aaaaatagctgggcattgtggcacgcgcctgtagtcccagctactcaagaggctgaggcaggagaatcacttaaacccaggagatggaggttgcggtgag
ccaggatcatgcctctgcactccagcctgggccagtgaacaagactccatctcaaaaaataaaaataaaaaataaaaataaagaatattaagctcacttc
ctttcatacct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1007 chr18 55409174 55409496 RIP_Alu_chr18_055_01 0 + Yi6AH29|19421|pAlu18-57043068 AGTTGCATCTGGAACTTGAT CTTCAAAGGATCTGAGGTGT SINE Alu Yi6 taaaacaccaaaaaagaaaagccacaggaggaatatcccagacagatattaaaacatacaaccgcatcttaagttaaaacagggttgtatcgcacatgag
taagaggacagagaccaatggattagagcagaaaattcagaattagacctgactactttggaaattttgtatatgaaacatggtaactcaaatcactggg
gcaaaaatgggttttaataagttgtattaggacaactaaatagtccattagtaaaaagataaaattagatacagacttcactccatacataagaataacc
ttcaaaggatctgaggtgtaagtgtgaaaatttaaactacaaaagtgctagaaggaaacagggactcctctgtaacctgggcatAAAAAGCTGCTAAGTA
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGGGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGCTGCTAAGTAtgatcaagttccagatgcaactgttaaaaagaataaacttggctacataaaattacttttgc
atagtgaaaaatgccataagcaaagtcaaagaacaaaagaaaaactgggagaaaatatttgcatcatgtatcacaaattaaaggctgatatccctaatat
gtattaataattacatatatcacatatacatcgtataaactcaacaactggagggactccaaaagcccaagagaaaaatggacaaaattcatgaacacac
agttcataagataaaaatgatcttaagtgtgttaagagatttccaagtctacccataagaagactggcaaaaatgaaagagctcgaaaacactctgttgc
tgaggctgtagagaaacaggca UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison|Candidate screening NA 60 461 123 NA intron
1010 chr18 55819849 55820148 RIP_Alu_chr18_055_02 0 - pAlu18-57453741 NA NA SINE Alu Y gagactgagggccaatattcaacacttaaagaaaagaattttcaacccagaattgcatatccagccaaactaagcttcataagcaaaggagaaataaaat
tctttccagacaagcaaatgtggaggaattttgttaccacaaggcctgcctttcaagagctcctgaaagaagcactgaatagggaaaggaaaaaccagta
tcagccactgcaaaaacacagcaaaatataaagaccaatgacactatgaagaaactgcatcaactagtgtgcaaaataaccagcagcatcgtgatgacag
gaccaaattcacacataacaatactaaccttaaatgtaaatgggctaaatgccccaattaaaagacacagactggcaaattggattAAGAGTCAAGACCC
GGCCGGGCATGATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCTAGATGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATGGTGGTGGCCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGTGGAGCTTGCAGTGAGCCAAGATGGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AGAGTCAAGACCCatcaatgtgctgtattcaggagacccatctcacatgcaaagacacacataggctcaaaataaagggatggaggacaatttaccaagc
aaatggaaagcaaaaaaaaagtaggggttgcaatcctagtctctgacaagacagactttacaccaacaaagaccaaaaaagacaaagaagggcattacat
aatggtaaagggaacaattaaacaagaagagctaactattctaaatatatctgcacccaacacgggagcacccagattcataaaacaagttcttagagac
ctacaaagagacttagactcccacacaatagtgggaaactttaacacctgactgtcaatattagacacatcatccagacaggaaattaacaatgatatt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1026 chr18 57879649 57879740 RIP_Alu_chr18_057_01 0 + 31724 NA NA SINE Alu Y ggttctcaagagaaacactgaactcacaccagtagtttcagctgaatacactgactgtagtgtatgcttcctgagtctcaatttcagtttggtaaaatct
gctctgaagatgcatttgaaacacagagtactatgcctataaacagatatactatctaatgccctaataatacaatctttattatttaagaaactatact
tattaacctgcaactattaataacaggtgacaaatctctcaaaagtgttctgaaaatccatggcaatcaccacaacactataaacattacagatacatgc
cagactacattcacggggcagtcagctcccactcctctctcaaattctgggacagattcccgccatttcaggaataaatgcAAAAAAAAAAAGCAATAAA
GGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCATTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA
AAGCAATAAAaatagtgaggacaaaagggcaacattccattcccgtgaataaaaagcatggaatggctgaaatcgctaattatactattaacacaaagga
gtttaggaataaaattcgtcatgaaggggaaccagtgcaggagcacaattccaataaccccggcacctgtgaagggagctctgccggtcagtttataata
tcagcgacatgacaagaaacaccacagcttttcaaatgtaccttcacacaagaataattggaaactcaaaacttaaatgcaacattctcacaaacagaaa
gcagaaaaagtacaataatgaagttttgacatgtgaaccctatcgtatggtgctttagttttgaatcttgacgtacatttccccctacttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1045 chr18 60324776 60324777 RIP_Alu_chr18_060_02 0 - pAlu18-61958756 NA NA SINE Alu Yh9 attttgctaagtgaaataaaccagacacagaaggacaaatcctacataataccaattatatggtaaatatagtcaaactcataaaattatggaggcgatg
gataggcttatggcgtaaattgaagtaaggacttcacaaccgtatttttctccaaacttaccaaattatatagatataacatatacaagtttttgtatct
caaaaaattatataaaaattttaaatttgataaatcattttaagattagaagcaatatctgtcaaaaagattatgtattaatatcttcatggtcatcatt
ttgtagttgtacgattttgagtgatttttgtctgcaatgctctgcttctgaattataaagacatctatttattatatgaagattaaAAGCAATTCCTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGTGG
TGAAACCCCGCCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAGCAATTCCTTTTGgtaaaaatttttaaaaagtgcatagttaaattatactgaaacaaacatattagaagtaataaaaatggaaaaatgtata
gacttgaatttgcacaaaataaaaaatgataaggcaaatataaaaatggaaaaaattgtaagtacagtggaaataatgtctttaaaatgcagaaatgcag
aaacccaatatacatatgaaaaattctccattgccactaaaatgaaagaaatgcaattcagaccatgtcatttctctccttgaaatctgcgtcgttcttt
tttttcaataaaaattgaagtccttatgtattagtccattcttgcactgctatgaagatatgcctgagactgagtactttccgaagaaatgaggtgtagt
tggctca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1046 chr18 60536760 60537061 RIP_Alu_chr18_060_01 0 - pAlu18-62170652 NA NA SINE Alu Ya5 aagttaaatagccaaaaatgtgtctcaaagattaatgctcttgaaatgtaatgcagaaaaatttggacaataatggaggaaaaccttctttataaaacag
gctaaacttaaaacaaaatcagtctcacaaagttagcactaagcattaaaatcactgaggaaaacctttttgctttttttcttctccttagacagtgtca
gcagtcgcaaatcaggttagggtttagatcactgtgtgttctaaattatatttatgcccttgtaaagctgtgcaacatgttgccttgcgtaagaaatctt
taaaccacatgttctggcaagtaactgctgatatttacttccaaaattcgatctggttgctttagatacttcagcaatgacctttaaAATAATCAATTTT
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATAATCAATTTTaagactatctttcagatgcattcttgtattgtaagtcatcactggcttataccttattatgataatttcaaaacaattaccttatt
tcttccaatgtcttttgatacctaagatttctagacttaattttagaacataaatcttcataaagtacaatatattctattaaaaaaaaattccccatca
ttggaaccagcataccaaagttgcatcaagatataaagttgaatgatgtaggtaattataaagattattttcatctgaagtatccacataattgaagcaa
atgtgatttctgcatgtgggaattatctcaattttccacttcagttggttagtgtaaaaataaagaattttaactttttacatcctcaagcaattaatac
t UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1055 chr18 61684233 61684562 RIP_Alu_chr18_061_01 0 + pAlu18-63318127 NA NA SINE Alu Ya5 accattttagctcagaaatgtggtctctttgtgtcttatttcccaagtttttaaaagcagataatcaggaatttttatactgttttagttttgtcgccac
tattatagactctggattttcacacagtaagtgctgaagccaatgagattaagtattcacagggggtgcatgtggggcccacagcctggcatgaaaattg
atttctagtacacaaataattcattctttatgacacctcagaaagtggtgtgaatctcgtttctaggcattaggtatcaggatttgtaactcaaaccttt
taagacttctgaacaaatattactggcaaaaagcaaggtgaggaggtggagatggggaataagaacttgaaaatcaagttcaattAAGAATGAAACTATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAACAA
AAAAAAAAAAAAACAAAAAAAAAAAAAAAAAGAATGAAACTATAGgaagtacctggactttagactcttaaaaaaaaaaaaaggtacttgactacatgtt
aagtttgtgttccagtgatgtgactaattaaagctacatgtaacatgacggatggggatgcactgacattaccagaagtttaatgctggaaggcatccca
cgtatcaatgctaacccaaaccttacagagggaaaacttgaggtgtagggtaagttcgagggtttgtaggagtacatataacaagttagaggatatgacg
gggtaagattctaggtctccttattctcaatcactgatttttatttaaactgcacaagaagtacatcgtgaaaatataaatatgtttacgcctatatatt
gctgaaataattcatgttatccgaagttgt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1067 chr18 63289850 63289851 RIP_Alu_chr18_063_01 0 - pAlu18-64923829 NA NA SINE Alu Ya5 acacggtattaaaatttaggaatgtctgactcctaaggcccacagttgggcctatttgtagtgtgacttgggacaagtcacttaaccattctgagccata
gtttcctcatctgtaaaatggcaatactaatatctaccttgcatttttattctaaatatggctgatacaaagaacacattaaatagtgcttttccatgtg
ttggaaaaattatttacaatttatttcaatgaagttcactaataaattatttctttttcaatatatatattcacttttatatatagtttaataaggcaat
agctattaatatacacattgaaataatttcaccaatactagtttttttacaatgacaggttttcttacaatgacagattttcttAAAATGACAGGATTCC
GGCCGGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATGACAGGATTCCtatacatatatttggagaaattattgagcaaggccaatctaaattacttagaaagttaaaaaataaaatatg
taaattaagcttaataatattactctgaaatacagaatacttaaaactttgaaaaatttagtgtttattctatgaccaagtcactttctcacatccaatg
aacctattctctctctctcttccataaaaatttctctggtactttcattagtccttttcggaacttttaaaaatttagtgtagctagtattctagttctc
aatcaaatgcatgttacacatcaagctaccataatgtactggtttttttttttttattgtgttttgtttgtctaaggcaggtcttcaaaagcatgataat
tttcatcaagga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1078 chr18 64723474 64723475 RIP_Alu_chr18_064_01 0 + 9510 NA NA SINE Alu Yb8 atccttttactttcatattctcttatactattcactgctatgttttgctaaaatcatgaattttaaatctcagtccctactaaatatagtgtttggcaca
tcctcataactgtgtgttaaatgcataagtttaagtattgatgcttctgttattactatttgaatttaattatgtttcctgatttgttttcaactcttat
acttttattctatcagtaaggcaaatataaggttattggaagtttatattattctttaaaatctccttcatgtgtatcaaacaggtgatatgttaaccca
tatccaattaaaacaaagatgcaaaatttgacaatttaaatcacttatatttaataaaataccatagcaaaaattatgacatttacgaatgtATAATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGACCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA
TAAATAAAAATAAAAATAAAAAAAAATAATTTCtattttttaatgtttgatgtaactagcatactactaataatccactatattattacaaaataatgag
ataaataattatttaccttcctatttaaaaggacataaaacactattgttacaaagattatttaaaattaaaactaaaatgcaagtttgagttaaaatca
taagattagtgtaaactcagattaatagatctgagccattcactattcttttttcttctctttttcattaaagtgaaatttcataacataaaattaacca
ttttaaagtgaacatttagtggtatttagtagattcacaatgttatgggaccgccctgtctagccctgtctatttaattccaaagcactttcatcaccct
ataaggaaacaaagcaagcgtgatg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1096 chr18 66997720 66998038 RIP_Alu_chr18_066_01 0 + 22399|pAlu18-68631614 NA NA SINE Alu Ya5 ccctatcactctaccctacagagatttgtaaagagctaagaaagtaccaattatattatttgagtacttgctggagaggcaagtttctctggacttccca
gatatgtaagccagtaaatttaaactttttgcttatgtttatttgaattagatgtctattacttgaaagactgatacagaaattggtaccaggatatagt
atattgcaagtaataagcagaaaaatattgacttccctgaggtaaagtaaagcttcttcattcccagcaaggatgctgtcaatccttgctatgggcacta
aaggagtgaattaagctattccctactgtattttagaactcagattatgagtggactggaggatagagctttagctccagaagtAGAAAAATAGCAAGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAAAATAGCAAGGTgttgtagtgtgttaactaaatcctgagtcattccttacactgcaaggaagcaaaacagcttccatt
caagcttgactctttgagagagctaagtgcacagcacacgattttcttaaaagagggtacatcttcctatgaccagcaattcatgagctttgagattcag
actacgatgcatattgtgagatcacaataattgaattctctgtcccacattgaagctaaatttagtaatttaaaggaagtgcaaagcaaaagatgagaca
ttgttaagaaagaatcccaagaaataaacatgcagcctcagacttttcccaaacccctcctattttgtattctctacctgatatggtaatgaactatcac
attttaaagcatcatgca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1104 chr18 68047754 68048055 RIP_Alu_chr18_068_01 0 - Ya5ac2584 TTCCAGAGATGACATGGACA AAAAAGAAGCCTGGAGAGGG SINE Alu Ya5 gaagtaataaaagtattcatttgaaaactgcctttatgagtaaatgttacatttaatgattgtatttaaatgagtgtgttgaagtaaaacagttcttgtg
acgaatacattcagggtgttaagacaaaataaggttccattatttagggtctaagtgagaaggaatagagtccctaagaaaagtctccatggagtttctt
catgaagtcctttgggcaatgacatcttagtaacctggttacaggaatgcttaaagcaatccctaatgctataataatgacagtgggttttctttccaga
gatgacatggacatcactcttagctttaggacacaatttatctttcccttccagtagtaggttgttaccagatttgaaataaaatAAAGAGTCAATTAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAGTCAATTAGTacagttagtcctggattttctcaataactatacatacttggaaaatttattcaccctctccaggcttctttttttctccttgcc
tgtgtaaaatggaataatctctaaaaagatttgtaggtctaagattctaagttacaaaaatgttcacgatgctattctaaatcacaagtgcaacatcagt
acaggtccttcgagaagcatacaccaagatggaattaaacttgcaagaaatatattggggtattgccctaggaaatgaaacaaggagggaagtagagtag
gctacattagctgtcagaccacgatgctggtcagacttctatgcaggaaagtgggattgtaggttgtaggatagttctaataaaatattggcaaggctat
g UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 496 180 NA intergenic
1105 chr18 68277656 68277990 RIP_Alu_chr18_068_02 0 + Yb8AC704 AAACAGTGCCAGGATATGAACAC CACTCTTCGATCAGTTATCATTGC SINE Alu Yb8 gggcaagcatgtcaagacataattgagattttatttaaaaaatatattttttttcctagaaaactcatgtacatgcaaaatcttgcatcctaacttaaag
gtttacaaagtccctaaactccatatgtagagacttacggaatcataaaaaccatgataagatacctttggtctccttgtgtgaggcattatttaaaaga
acctccagaacctacacacacacacacacacacacacacatgcacaaacacacattctatgtgtacatatacatagtatatgcattcaaaaatatatatg
tgatatgtgcaaaattgcatacacacatatgcactcttcgatcagttatcattgctaaagattagtcagtgactaccatcagctcAAGAATTTCCTTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGTCCAGCCTGGGCGACAGAGC
GAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAATTTCCTTTTCactattctattagtgcgtaacaaacagtagatagcttactttatgtgttca
tatcctggcactgtttttgacattctacatagatgaagagtaaacctataatacatctgcatgttgcgtattgttttcccctgtaaacatatagaaaact
caggaacaaagattttcagtgatgtttcctgtccaaggtcacctggttagaatatgacagttgagttcatagcatagactcactgtgacccagtgtcttt
tcttctccatcacactagtatttttagttagagaaaactaatggaatgaacttttctattgcttcagttctccgcagatcctatgaagtaggtttgggat
agggagcaggtatctataggattttctacctacc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 485 136 NA intergenic
1114 chr18 69424393 69424697 RIP_Alu_chr18_069_01 0 - pAlu18-71058285 NA NA SINE Alu Yc1 aaaatttagaaggcagtgtagagtattcttatatgtcccccacacagatgcccctgttgttacatcttacatctttacagtatcttcattacaagtaatc
gatcaatattgatgcattagtataactgaagttcaaagttgagttcctcagttttacctggtgtcttttttctgttccaggattccatccaggataacac
attatatttaggcatcctctctccttagtcttttcttggttgtgagggtttcccagattttctttgcttttgatgaccttgacagtttagaggaatatca
ggtatattgtaggaagcccttctactagaattaatctgacatttatctcatgattagattgagattgtatattttttgggataAAGATTATAATGTGTCA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGATTATAATGTGTCAttttcgtcacatccaatcaaagataggcactaccattgtgatttttgactgttggtgctgaccttgaacactgctggga
tggtgttgtcaagtttctccacaggttctccacaagttactcttttgttgccctttcagtcgctatgagcaacacccacttaaggagcaatgacttatgt
tctccttctttatggggaagtatctctctgaattatttggaattcttctgcatgattgatttgtctcttctcccttatgtttttcagtcaacagtgcgtg
ctatggatatttattttgtattttgtgttatgtttcaatactattttattctaaacacatatttttggttgtcatttaaaagtttatttttacacaattg
cact UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1121 chr18 70303422 70303748 RIP_Alu_chr18_070_01 0 - 13456|pAlu18-71937323 NA NA SINE Alu Yb8 ttcaagtaggcagttaagaagatgcaaacaagcatacagaattaagcccttaaagtcttgtaaatcactactttgaaggaactccaattattcccatgac
taccctccacccaaaacagcagcagcagcagcaaaacctagtctaaacattttctatgagtacttcttgctctctggttcagaacaattatataatacct
taactctaagtatgttaaagaaagttaatttaatgaattcaaaaaattggctgcaatctcctccaattcagtgaaatctttctgcactatgccacagatt
ttcacattcaaaaagctcaaaagagcttcaaaacataaggcatcgctttttccactagtacttacaggctttttacaaaggtcaatAAAAACATCATGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCATGGAatgagagtaaatctcaatgtggctgtggttagtggttagatctgtcgttctggttttttg
tcctgtgctgtcatgtctgcgccttccggacagtatgttctctgttttactgccgttatttttagccatacatatattttttttactagagatagagttt
ggctgccatgtgtctgaataggagtcttgtgatcagcttaacactgcgtttttcttttttaacgtttgtcttttagagatgcattactgttgatgtgtta
gtgtggcacatagattttcaaaatatgacattttgaaagactgttctgaaatatcactgtacgtcatgccagcacaaagcaccagccaacaccgaacttt
gacctcaaatactgaactagccacat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1132 chr18 71699009 71699319 RIP_Alu_chr18_071_01 0 + pAlu18-73332903|Yb8AC1776|238778 GCACCACTCTGTGTAGGCAA GGCATACATTTTGCCCTTCT SINE Alu Yb8 tggcacaagtcagcttctgggtaaggcatgcacattttatggcaccttatatagaccagtgaaataaatacacgagatgcaaagctcaaagtgatatatt
ccagatctgacatcttaccatggctttgagcttcaggcactgacaaatattccacacgtaccaactctcccagaggaggaaatataatgatgtttatgtt
atgcaatatgtaaaatatttatacgttgacttcaacacaaactgactatcatttaaatcaggaggtgccgctcacaataaaggcaagtgacattatctgc
accactctgtgtaggcaaaggggaactcagtacagcaaatgatccatttatgtacagaataagattccaccaatgtcagtgttttAAAGAATAACAGTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAATAACAGTTAtgggaaaggtttttaatgtgcttgcttcttctagaattgttaaattaccaagaagggcaaaatgtatgccttcct
gactattgcccttatctttagaatgggaaagtcttttcttctgacaaaccattttttcatgaataacctcttcaatagcatttagttatcattattaata
aattgttacagtaataaattatattttaaacattttattaaatgcagttctcatgtacttaaaataaattgcaaagccggcttttttcatggtatttaat
atatatagtatgacacaatgtgcttttaatatatttaatgttatatactttaaaatctaagtgtgttgtacttttatggaacttactttatattcctttc
tatatggaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 60 497 172 NA intergenic
1134 chr18 72082927 72082928 RIP_Alu_chr18_072_01 0 - pAlu18-73716907 NA NA SINE Alu Yi6 tgtaccttgttagtatggtggattactatcttagtacatttgggctgctataacaaaataccataaatgtgtcccttataaacaacagaaatttatttgt
cacagttctgaaggctgggaagtccaaaatcaaggcactggcagaattagtgactggtgagggcccactttctggttcatagaaagcatcttctcactgt
gtcctcacatggtagaagggatgagggagttctctggaatctctagtatcattcacaagggctgtaccctcatgacctaataactttcaaaggcccatct
ccaaataccatcactttgagggctctgctttcatgacttaataacttctaaaggcacacctccaaataccatcactttgagtgttAAGATTTAGCTTATG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGATTTAGCTTATGatttttgagggagatataaacattcagtctataacaattatattgattgattttcaaatattaaactagaataa
acttctggaactaaactcctggaactcctggaataaacttctcatgatcattacacacagacatattttagattttttttttttactgaatgctatttga
taatattttcttaaagatctttacatttatattcatgagtgctattggtctatagttttctttttttgcactgtctctgattttagtatcaaggcactac
tgacttcacaaaatgaagtgggaagggtttctttctcttctatcttctggaagaaattgtgtactattggtgttaattttttaaatgattggtagatttt
gctagtaaaat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1150 chr18 74098284 74098604 RIP_Alu_chr18_074_01 0 + pAlu18-75732179 NA NA SINE Alu Yc2 ctgtcaattcagatcgcagtcaacccattcaaaatacatgcaataagcaagttctcagttgaaattgacaatttctagtgcctattttgctaaattgtga
tcttcgttccagagcataacagttatctgttatggagtgtggcggtctcattaatttatgcttagaactgctcctgacagtggattgtctttggcttcca
agaacctttcattgactgttttaagctttaaacaaaaatactaccaaggtaatgtgtgtcatctactctgtactctccattgaccctgtttcttatactt
tctagagggaatgaaccaaagcatatttacaaaagggtctctatcaaggccggggtggggggggacaagagagaaagaatagcttagaAATTAAGTCCCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAAATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAATTAAGTCCCTtcaaattaatttgtgcagacactttggctttggatcagattatcaaagtgtttagcacttacggctca
gcttccaaaatgtgcatgcccaatttaattaggggtaattttcattcattacgcactaaaggctggttaggctggtggtggctcaaaactctattctaac
agtgatattatatgaaaagcccataatgtcacaatgagttcactcaaagaagagctgccacctaggtaagtgaggagacagtagcagcccctccctggcc
gacccatccctgggctgaagaatgtaaaccatcgggattggatctgacatagcaagtcaaggcctctgcgtccccagcatccctggcgtgcgcgtctctg
tcgattagagaccaaatctg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
591 chr19 788877 789175 RIP_Alu_chr19_000_01 0 - Yc1RG94 GAGCTGACTCATGGCTGAAAC CATGACCGACCTGATGTGTATT SINE Alu Yc1 atattatttacattatataatatataatattttaaaatatacatatatattttttgagacagggtctggctgtgtcacccaggctggagtgcagtggtgt
aatcatggctcactgcagcctcgacctcctgggctcaagcaattctcctgcctcaaccccccaagtagctgggaccacaggcatgctccaccatgtccag
ctaaagtttttctttctttttttttttttttttggttggctgtttaattttttgtagaaatggggtcttgctatgttgccctggctggtcttgaactgcc
agccttcagggacgctcctgccttgacctccccaaatgctgggatcacaggcatgagccaccatgaccgacctgatgtgtattaaagaACTAGAGCTGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAA
AGAACTAGAGCTGTGctgtggccgggcgcggtggctgttgcctgtaatcccagcactttgggaggctgaggcagatggatcacaaggtcaggagttcaag
accagcctgggcaacatggtgaaaccccgactctactaaaaatacaaaaattagctgggtgtggtggcagatgcctgtaatcccagctacttgggaggct
gagggaggagaattacttgaacccgggaggtggagggggcagtgagctgagatcgcgtcactgcactccagcctgggcaacagagcgagacaccgtctca
aaataaaagggttattctcattcaacaaaagtgctgttggtttcagccatgagtcagctcatgctgaggcaagctgtttggcttgcagtcctcagtttcc
cca UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 0 0 0 NA promoter
615 chr19 3945560 3945871 RIP_Alu_chr19_003_01 0 + Ya5-MLS30 GCACGATTGTCCCAACGAATCT GGACCTGCCACGATGTCTTGTATAG SINE Alu Ya5 gacaggctttcatcatgttggccaggctagttttgaactcctagcctcgagtgatccacccgccttggcctcccaaagtgctgagattacaggcgtgagc
cacagtgcccagcccagattggcttttgccccccactcagcagaatgcccttgagaccctcttgtcctttctaaattaatggcaatataataatatttca
caattcctgagggcttactgtgtaccagacactgagctaaatgctttatggccctacaatcaccctgtaaaatagatacaatttgtggtgcccagcctgc
acgattgtcccaacgaatctgccctcctgacatccgggtatgacctgctcacattgaacagggctgagctttataggatgttttGAAAATGGGAGCGTGC
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAATGGGAGCGTGCtgtttcaggttaggctatacaagacatcgtggcaggtcccagtagctcacatcgtaatcccagccttttggaa
aaggggaggattgctcgaggctagcagttcaagaccagatttggcaacatagggagaccccgtatctaccaaaaaatcttttttttttttttttgagaca
gtgtctcactctgcagccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcttgcctcagcctccc
gagtagctgggactactggtgaccagaaccatgcccagctatttttttttgtatttttagtagagatggggtttcgccatgttggccaggatggtctcga
tgtcttgacct UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
631 chr19 6103305 6103560 RIP_Alu_chr19_006_01 0 - Yb8NBC598 TGGGTCCTATCATCCCCTATC CCAGAAGGCATCTCATGGTT SINE Alu Yb8 tttaagcatagttgtaaccatacagtgtataaagattttgatacctgctttgtcacctctgacatcaaaaatgcttaaaatgtgctcttcagagccatca
tttcaaaatattaccgagaatcccatccagaaggcatctcatggtttaatccacagctgtgggacacttaggttgtccccgactttttgccatcactaat
aacacttccaagaagtatctttgtgcataagccaaaatatattcatgttttggttttgtttctttaagtaaaactcccaaaggtagaattacaagctcaa
gaagaaatcagtattttatttttacttttgtttttttcacgattacagcctgggcaacatagcaagaaaccatctctacaaaaAAAAAAAAAAAAAAATT
GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGCCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGC
CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATTagctgggtgtggtggtgtgtgctcatag
tcccagttaccctggaggccgagttgggaggatcgcatgagcccaagacttcaaggctgcccactggctgtgtgagcctcagtttcctcatctgtagata
ggggatgataggacccacttcacattgctgtcgtgaggttttacaggatcatacacgtggagcacaatgcttctgcacataatcagaaacctctaaatgc
tatctacaattattattttgtctgcaaaaagttcttcagctgaagaaaatcgagaggtctgagactgctagtctaatgggtgttattgcgtatgacctgt
gatcagaatgatttgttcgtgcatctatcctgcctgctaactagggcgttcatcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 60 691 398 NA intron
649 chr19 8420425 8420718 RIP_Alu_chr19_008_01 0 - pAlu19-8409311 NA NA SINE Alu Ya5 tctcctgagggacaaggacccctctgcccgtgtgagaaccatcccttatataaagtgattcttcacagaaatccctcaagtcctgcgctgctctaatgca
tgtaaggtgtggagagcactattcacagcaccattccagctccaaggccaccactgaactacccacatgactcaagctctttctgtctctagcgctttac
cagcaaaaccagcgcaacctgtatgcatggtagctcagagggacactgtgacaatcaacaaagaatggcaaaacaaaaagcagctcatctagggaagcag
tactgcatgtggctaagagctggggtcaccatgtcgtcactaggcctcggtcctatggaggctactacctacacgcttacagctttAAAAGAGACTCTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGCGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAG
ACTCTTAGgcacacagtgaggcaatgatgtatttttctaccaataattttattgagaagggtagagagggggactgattcactcctagccttctactgtt
caggctttaaaactagcaaaccagagccaaggctgagaaaacctaggcatcataatcattacagactagcaaagggacaatttagctttcaaccctatga
ctgcaaaatatggtaatggggaagtccattggagaaccccccctcccaaaaaaacaagcaagctaatctttgcaggctagtatctctttccctaaccaga
ataaaatcaaagagctgagtgaaagcaaaggcctggcagcatgcattcaaataatccaaaaccctgtcttctaatcttgagctcacaatctgac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
686 chr19 13340570 13340870 RIP_Alu_chr19_013_01 0 + Yc1RG130 AGTAAGAGAGGGAAGCTGTCAGG CTATTGCAGTCCCCATTTACAGA SINE Alu Yc1 tgggcttgctctgtcacccaggctggaatacagtggcatgatcacggctcactgcagccttgacctcctgggcacaagcgagcctcctgcctcagcctcc
cgagtaggtgggactacaggcacacttcaccatacctggttccactaccatttttttcttgaggctattaactcaggtctgaacgatgacaacatcctat
gtttgtaaccactatggtatctactaggaaagtctatgatcaaaatgaaggttcaaacatatagcctgaggctttgcttcttgattgcaggaacttccca
tggctcttgatgggtggagaccacagtaagagagggaagctgtcaggatagctcgaggggccatgccactccaagggcttAAAAATGTAATGTGGGTGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCTCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATGTAATGTGGGTGCTaacagatgcagtgtggtgcagtggttaaggtgctggatactcttggtgtctggccaagatcccattttctttctggtgta
cccgccctccagctgctatggatgttggttgctaatgcctcccagctgcctctcttcttagtagaattgcccttggtgatcaaaagctatctcacctggg
agctactgcgtctctacctcccatccacagtgactgactatagaagtacaaaaggccggcatccttgccatgcattggaggacaactctggtgtcacaca
cactccagctgaaattgcgtccctgctctatccattccccagccccaccctgctgatctcctgctgtctctcccaagagccgtcccccaataaagcaggt
UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 59 887 568 NA intron
736 chr19 19828362 19828664 RIP_Alu_chr19_019_01 0 - pAlu19-19812470 NA NA SINE Alu Y caaaataatctggctcagatggagatctgtttttctctccaatgctttgggtgtctgtttcaaaagccctattcatatccgatggtgtctacatgaggtg
gactttcatagcgagaacttttagagctatttctatctggacttatgctggaaattcagcagtattttttccatgtccctactataggtagaaactgagg
ctgaaacactaatcacattctcatgattgtgaaggtgtaattctacccaggaggcctgcaggctctcctcctgcagctcaggcctcactctctgatgtga
cactagagtgctgctgtggcaaatggggttcatataaaatgtgagctgtgctccaggctgtgcctcagtggcagatgttataggtcaagAGAGGACACTA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAATATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCCAGGCATGGTGGCAGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCATGAACCCAGGAGGCGGAGCTTGGAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGGAAGACTCCGTCTCAAAAAAAAAAAAAA
AAAGAGGCCACTAGgtaaccaggagaaagcaagcaggagtgctgtaacccaatgccagggagtacagagccactgctctaaaatgtaaatagccaaaaag
atagaaccctattcaaccatttttgtagcacaatgaaagcctaccttcagaaggcacctggattaaagctactaaactacttcctgttatgaagatgtga
aaagtttgtcattgaatataagcaattagcatacacagatggcctcttcaatctgttcataggatgaactatgtatgacatggcgctggaaattcttcta
tttgtgaactaattatggtgaccatctttctgtctttgcgatcccttaagcagactgatgatgatgcatgtcacaattaagttcaattgtgtaataaaac
cat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
737 chr19 20037729 20038026 RIP_Alu_chr19_020_01 0 - Ya5_416 TGCATTCATCCAGCACTGTT GCATAAGGCCCAGTCAAGAG SINE Alu Ya5 caagctttatcctacataaatggaaatgcagatataataagcaaatgagataagcaaatcaatgaaataagcagattgatacaataagcaaattgcaatg
gaaagaggagaagggaaaagagatatatatattatgctcgccagactatggaggattcaccaccagagtgggaagcaacagtctgggctccagaatcaga
cactcatctatgcacagatgaggagaggtctcatgaagcttgggcacactctgggaccctagctctttggtaatgagttgtttggcataaggcccagtca
agagagtcgttcatgattgggctcaagcaacacaaaaaagtcaacttgcttttgcaattctctattgtttttcaacaactaatatatAGGAATAGATTGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGAGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGG
AATAGATTGAaatagagatatctccaaaacagtgctggatgaatgcatcaaggggctcacacaacctgttccaggacttggtgaccattggttgtgtcca
ttttcaattgagttcaaatttaatatttaacttttcctccacaaattttcctgtcttgatgaattggctctgtctaggcaaagggcaaggtgaacccctt
gggcagttacactactctgccttctgggttcaagtgattctcctgcctcagcctccatagtagctgggactacaggtatgcaccaccacacccagctaat
ttttttgtatttttagtagaaatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccacctcggcctcctaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 463 153 NA intergenic
741 chr19 20537827 20537828 RIP_Alu_chr19_020_02 0 - pAlu19-20522022 NA NA SINE Alu Y ggttgcagtgagccaagatcatgccattgaactccagcctgggccacagggtgattccgtctcaaaaaaaaaaaaaaaaagtaagcacttccttcttatg
taaacactgtgtttgagtaatttccctggatttttctaacacttagtttcaaaaaccaagtaaataactctgacatggaaatcaaagcttgaacctagtg
actccaagctaaggctgatattaagcctgcaacaggatgttactaaagactcagtttttttctggggagcctcccctgcacatgtcccagcctgctcacc
ccagccatagaaggaggctttatcctgagagaagctacagagccctggaaagctggggccccacaggcagatgcagctgaggttAAGATGAAAGGAAACT
GCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAAGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAGATGAAAGGAAACTtagagggtcttattgatgatgaagttgttatgttttgtggcactttctacactttgtaaaataaaaaatattaatttatgtta
aaaaaatgaattccaaaaaaaattgcaacagcagaaaataccaactaatttaagatctttatggcttgcaaagatgtaagcagaaaagggctttcttttt
agggaggagcaaacaagattagaaaggaggtgggaggtgaatggcaaacggagagtgaaaaagtcatattttagatcagaggatgtcttaccctgaaatc
agcatgttcttaggagggacataaaatagggttgtatgctgactcagactgagggtagctcaaagttcaggagcctgagggagggagataagcttaagaa
g Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
757 chr19 22559997 22560310 RIP_Alu_chr19_022_01 0 - Yb8Sb23467|Yb8AC1805|Sb19.3 TCTAGGCCCAGATTTATGGTAACTG AAGCACAATTGGTTATTTTCTGAC SINE Alu Yb8 tcaatctaaccgaactaatatttagtgagaggttaatataaactaggcattggtgtatagatttgacaagatgaaaatttcaccctcaagtagatcccat
agttatcagaagacaaaaacataaaaataactgtaatattgagtggtatattccaatctagttttaaacattgtattggtgctaaggaagttagaaaaac
aaaccagacacaaaatctgcccacaagtgcttgtaatttacttgaagaacttaattctaacatagtttcatcaggtaattcaggtaaatattcactctag
gcccagatttatggtaactgataattattgataatttctttagatttgttgatattctacttgatgaaacatccaaattttactttatgtAAATGTGGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTAGGCGACAGAGCGAGACTCCGTCTCAAAAAA
AAAAAAAAAAAAAAAATGTGGCCaaaagtgtcagaaaataaccaattgtgctttttataaaacaacaatgaacaacgcttgactaaagccaccacacaga
gcgactatcattatgggtaggttgtctttgaattttaaggtattaatcacagaagaggaaactcagtcctgagaattgcctattgggtggttaatcattt
ctgttagttacattttgactaatcatccatccatccatccatccatccatccatccatccatccatccatccatccatttatccatccatccagccagcc
agccagccagctaatatcccatcccactccacaggaatatggtgggcatctcaatattagctgtaagctgaagctggctcatataggcttctgagggacg
attgttaaatttc UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, Carrano AV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specific Alu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.PMID: 9719639.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
Candidate screening|Library screening NA 60 494 171 NA intron
757 chr19 22626862 22627023 RIP_Alu_chr19_022_02 0 - Yb8AC774 TGGCCTGTAAACAAAGATGAGAG TGGCAGATATTGGTATCTGGAAC SINE Alu Yb8 cggtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtggaggcgagagcccgtagtcccagctactcgggaggctgaggcaggagaatgg
catgaaccccagaggcggagcttgcagtgagctgaaatcgcgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaga
aaagaaaatttggaataaaatctgagtttctgaatctctaacaagctcaccagtaatgcccatgtttttggtccaagaaaactattttgtcaaacatcca
gtaagtggaaaagcctgtgtgtttttcagtttttctggcctgtaaacaaagatgagagctttcattttccaaagacagataaatgcaaagaaaaCCTAAG
GTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGTCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTG
CAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGCCTAAGaaaggtcagctgccagattaaatgtgattgttt
atgcacatctgctgaataaagatactcagtaatgaagagaaaaataattaactctatagaaaaaaatctgtcacagagttcattaatcaagtgagttatt
aacatcaagtgcatgaagacaaatgtgctgatgcacacagaaggacacggcatcactgctatgatattgcccagccaaaagtaaattatagtctgaattt
aatcataaagaaacactggttttatgtaaagttccagataccaatatctgccatgttctgtaaattttaatagtgattttaagtagtctttctttcacac
cctaaagagcaagtatctcctaattattattatttttaaactttctgcgtaataaatgcca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 518 351 NA intron
761 chr19 23112643 23112945 RIP_Alu_chr19_023_01 0 + pAlu19-23096752|Ya5ac2670 TGGGCAGAGTGAATATCCTTTAG GACCTTGGTCCTTATTGTCTTCC SINE Alu Ya5 gtgctatgtttaagtagaagcattgagaatgggcacaatatagttttgctttgttctctgtgaattttaagaagcaaacacctcttcaggtttttataaa
ctggcttcaagatgtaaagatattcttttgttgggtgcccagggtgatagaatgccctctgggcttatagtggagaggggttgtagcttggtaacaaggc
tgctgggtcttcactggggtccaactttagttgacttgttacaaggggcttgggtagttataattcccattatatttttgggcagagtgaatatccttta
ggactttgctctgtagggtagacactagggcaggtttctgcaattggttgtgcatatatggtgggctttatatcaaaatgtagatGAAAATGGCTTTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAAAATGGCTTTCACtgggtaccagaaaggatttccccaggtctctgtgtgggtttccatgtaggtagagctgaccatgaactgtggctcaaagagct
ggaactgagtcatgcaagtgcttcggggaagacaataaggaccaaggtctgcagtcttgtctgtgtggctataaatgagtgtctttctccaggcctctga
aaaggcaggacctcttccagactttggctgggaagagttttggatggtttcagagtaagttcaaaattctcagtgggaccaagttgggtggataattttc
tggtctgtagccaagaacaggggtcctgttgtttgccacctgaatgaaagcctgccttctaaaaaggatgctcctcaatcttgggcattagcagagtttc
ac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 476 159 NA intergenic
857 chr19 35709189 35709490 RIP_Alu_chr19_035_01 0 + Ya5NBC349 TCAAGAACTGTGGGCCAAAT GGATGTTGTCACAGCAGCAT SINE Alu Ya5 tctcaccaaggccaggttcttaggtgaccctgctcagcgacacgaatggtctctggggtgggctccagcccacagtccctgtcccacagagaagagacag
gtgtgcagagcccaaagagacatgtcacacctgatgtcttgtcccaggtcaattctgtgaatcccaaaccttgcccgctgcatccagggttgcagtctct
agcctggggactgagagtacctgcccacagccagcccatagccaccccttggggccttggcaagatgtggcggtctgcggatgacaggggatgttgtcac
agcagcatcacatggtgccagagggcagagaccccatgggtggcctaatccccagcagggagtttcacagactccaccaacaattAAGAACAGGTTCAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAACGGGTTCAGGgcttgggaaaaccagaaacacatttggcccacagttcttgatcttgaagccctggtatattttaaggaaaatgtaatccatgtg
tttctgattcattttcacttaactcatcaaaatgttgctttagagaaggtatttgaaatcctagtgtcttatatttctccctttttctttttttgagacg
gattttcactctgtcacccaggctggagtgcagtggtgtgaactcggctcgctgcagcctccgcctcctgggttcaagcgattctcttatctcagcctcc
cgaatagccgggactacaggtgcctgccaccacacctggctaatttttgtattcttagtagagatggggtttcaccatattggccaggttggtctcgaac
t UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 469 53 NA intron
903 chr19 41738035 41738337 RIP_Alu_chr19_041_01 0 - pAlu19-41722139|31012 NA NA SINE Alu Yb9 tagtaagggctggagtctaacagcacagtgtccctcctgtgtgcctctattccccaaagaatgttcaacactcctatgtgttcagtcctttgtcaagagc
agatataaagcaaaagttgaatccctagacttttccttgtcatattcttggatagggaaaaagcagatggatctgtttgataattgggcatactctgacc
ttctccacagacttgagtttccaggtagattgatttgatgttgaatggcctcaagtcatacaaaatgatgatgattgtagacgcagcattggagaagacc
ttctctaacctaaacgttggaatataattaaggctattatatttttaacaagaaaactactctgtagccactaaaaaacacttactAAAAACTTTATCGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAACTTTATCGCtggaagtaataattgttattatataatgtgaaataatatgtcacatagtaatgaacttggagctacaagaaatctttaatttta
ttcataccccattttcaaagttagatatttttctcctgtacaggggaatgacggtatagaaacttacctttattgatgattcatgaggcaggcacatagc
atgaaatgtgcttgtatatagtacttcttttaatttgtaaactggttattaatttccagacatggttggctaaataagagatcccataagtatgcagaaa
gatttcagtggatcaaagggagtcttgaaagatgatagtctggtttggaagcactaatttccttacttcccatgtcacagtcttcttttggcctccttgt
tt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
926 chr19 44791222 44791519 RIP_Alu_chr19_044_01 0 + HSC4N5 CATCCTTGGCAACTAGTTCCACTCI ATCATAGACACGGTGTCCTGATCAI SINE Alu Ya8 tccaactcaacagcaggactgggtgaacacatagaaactgggaagctgtctccttcaatacctcaccttcccatgcatgacattaatttcctaaaatcag
gagagtctcatggttctgggacttaataaatggtgattggctttcaccaaagaaagcctttcaaaaggctcatggagaaggtgcacagcatcacaggact
tacctttgaatggcagacagtgttacttctaaggttttacattgatcaaggtgagtcatacagacggccctaatcaaaaggagaggactccacaagctgt
ggttattgtgactgtagtcatgaggggccatccttggcaactagttccactcagaactagttcccacataccgaaaacactaaccatgtAAGGAATCTCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAG
GAATCTCTgaaggcattacaattgcaaaaacaggctcagagtaaagtgcaatatcttatctgatcaggacaccgtgtctatgatgtgactacaaattatc
acttgcaatcccctgcaacatgtgcaccaagggggcacattatctgctttatactaatcaaagaagactgaacgagacaggaaaagtgcaatgaacacat
atattttagatgggcaaaaaaaaaaaaaaaaaaaaatagacagcagtcactaatccatatttttgctgaaaccaaccagaaaactatttacattttctct
gggaatgtttttctgtagcacttgtccccaccctccattctcagtttcttggagttcctaccaagacggcagaatgacagcccttttcccactataa UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.PMID: 7714898.
Library screening NA 0 0 0 NA intergenic
1013 chr19 56149288 56149596 RIP_Alu_chr19_056_01 0 + Ya5NBC150 AAATGGAGACACAGAGGTGTAAAGA CCCAAACTGCATATTTAAAGGGTAG SINE Alu Ya5 ctgcttgttcgtttgtttatttatttatttgagacagagtcttgctctgtcgcccaggctggagggcggtgatgtgatctcggcccactgcaacctccgc
ctccagggttcaagtgactctcgtgcctcagcctccagcatagctgggattacaggtgtgccccacgacacccggctgattttttttttttttttttttt
ttttagtaaagacagagtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgattcacccacctctgcctcccaaagtgctggaattac
aggcatgagccacggtgcctggcccaaactgcatatttaaagggtagagtctgatggctttaggtacttgtcacatcagcatagtcAAGAAGATGATCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAGATGATCATagacaccaccctgaaaactgtgcttctgcccctttgcgtgtatctgggactctgttaatctctctttctttacacctc
tgtgtctccatttgtgtctttctctatcttctcttttctctctgactctgtgtgtccctgtgtcccaggctctctgtgtgttctctctgtgtttctgtag
ttgtgttattctgtctctctctctctctctctttcttccccaccccttcctccttccctgtctttctgcctccctctccctgcattttaggcaggggaga
ctcaagccactttgcagagggagctctcaactccttctcttgccttcactctgggcccaggccgtggagcacaaagaggcagggacccagtctgggaatc
tgcaggtg UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening NA 60 491 169 NA promoter
1015 chr19 56468219 56468513 RIP_Alu_chr19_056_03 0 + 238246 NA NA SINE Alu Ya5 aaggggaaagttaatatctgccatgtgttgtcagatctaatttattaaaaagtagctgggagttcagacttttatgtgaggatcctgatttttaaacatt
gcaactaatgaaagaaagtctgtatgcagttttcttaatgcaggctaaataaaaccccctgcattttaactacctcacaaagccactaatttgcaaactc
tagactatcttaaatgaggaagcagttccctagtgagggaagggcctggcccagaaaaacctagaaaatgggaggcaaagaccaagcctttggactgctg
gccgtccactcacagaagaatctagaacccttcctttgaactggcttcacatccaagttgtatgggtttcctgttgctttcatAAGAATTACCACAACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAT
TACCACAACTTtagcagcttttttgttgtttgttttgagaccaagtctcactgtgtcacccagactggagtgcagtggtgcaatctcggctcgctgcaac
ctctgtctcctgggttcaagctattctcattcctcagcctcccaagtaccaccacacctggataattttctaaaaatatttttagtagagacagggtttt
gccatgttgcccaggctggcctggaactcctggcctcatgtgatccacctgccttggccttccaaagtgctgggattataggcatgagccactgggccca
gcccaattttagcagcttttaaagtaacactcatgtatgatctcacagaaggtcaaaagttctggtgtggcgtggttcccctggttttctgctc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1016 chr19 56552457 56552458 RIP_Alu_chr19_056_02 0 - Sb19.10 GCCAAGAAATAAAATAGCCCTCC TGGGATTACAGGCATAAGCCAACAT SINE Alu Yb8 ctcacgcctgtaatcccctgcctttgagaggccgaggtgggtggatcaccagagatcgggagttcgagaccagcctggccaacatagtgaaaccctgtct
ctattaaaaatacaaaaaattagctgggcgtggtggtgggcacctgtaatcacagctactcaggaggctgaggcaggagaatcgcttgaactggggaggc
agaggttgcaatgagctgagatcatgccactgctctccatcctggacaacagagcaagactccatctcaaaaaaaaaaaaaaaaagaaagaaagaaaaaa
aggattgtggtgggccaagaaataaaatagccctccaaaacagccaggtttcaatccctggcacctgagaaggggaaatcacttAGAAACAGGGTCTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGC301GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAACAGGGTCTTTGcaggctggccatgttggcttatgcctgtaatcccagcactttgggaggccgaggagagcagatcacc
tgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcgtggtgatgcatgcctgtaatc
ccagctacttgggaggctgaggcaggcaaattgcttgaacccgggaggcagaggttgcagtgagccgagatttcaccactgtactccagcctgggcgaca
gagcgagagcccatctaaaaaaaaaaaaaaaagaaattagaaacagggtctttgcagatgtgattaaattaagcatcttgagatgggggcattatcctgg
attatttaggtgggccc Other - Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, Carrano AV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specific Alu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.PMID: 9719639.
Library screening NA 0 0 0 NA intron
1027 chr19 58015175 58015481 RIP_Alu_chr19_058_02 0 - Yb8NBC548 GATTGGGGAGAAGGACCAAC AGCTCTTGACCTTGAAAACAGG SINE Alu Yb8 atttgccaagagacagcaaaagtgataaaagataagaaagcaggaggagaaaagcaactggagaaatgtagagaaaagctagatgtacagagagatgaag
gacagacagcaaggtagggagaggggcagaaatgtggaggctcatcagagtgagggagaggaggagggatgtggagccgggtcagacagagcagagtggt
gctggtggcaaggagaacagagggagaagcacagcggggaggacacctggggatctggggtgccagactgggtccagggggttataacagagaagagaga
atttaacagggagagcagagaggggagaagaggtggaaatctatggagattgaggacgatctaaagattggggagaaggaccaacAAGAGGTTAAATAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAGGTTAAATAAGttgcaaggatggagcccagctaatttttgtatttctagtagagatagggtttcaccatgttggccaggttggtctcaaa
ctcctgacctcaggtaatccacccacctccacctcccaaagtgctggaattacaggtgtgaaccacctcagctgtccacccatgtattcttgattgaaat
aatttgcttatgtcttagttctacagttgaccctgttttcaaggtcaagagctgtgtgtttacactgctgcattttataaatgttagtgtgattttcttg
taaggaagaattcaatgttgggagtcaatttcatcagaacctttcaaaagaattttctttaacccaggcatgtgaaagatgcttctctaattttaaggat
gggatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 588 267 NA intergenic
1031 chr19 58512614 58512916 RIP_Alu_chr19_058_01 0 - pAlu19-58496721|Ya5ac2662 CCAAGGGCCAAGTCTATCAA CACTTGAATTTCATACCAGCCA SINE Alu Ya5 aaactgtacagaccaagaggaagtggggcaacattttcaaagtgctgaaagaaaaaaaaaagctgccatccaaaaatattatacagcaaagctacccttc
aaataggaagaggaaactgtctttcccggacaaacaaaagttgacagcattcatcaccatcagatccagcggacaagaaatgctacaaggagttattcaa
catgaactaaacaccaattggcacacacacaaaaattgaaggcacaacacccactggtaaaatgaagtataaaaggaagcccagaatactctaatactgt
aattgtgccttgcagtccactcataactctagcatgaaacccaagggccaagtctatcaaaaacagtaatacctacagcaagctgttAAGAGTGAGGCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAGTGAGGCAAtacagaaatatatagatggagagcacataagtcaaaagtggctggtatgaaattcaagtgtaaagatgtttttcagtttttcttt
gtttctattcttttttgtgatctaagataagttgtcatctatttaaaataaatgcttgtatttataagatatttcattgttaattcttttgtttgtttag
ttctctgttatttcaagtaaattttaataaaatgagtggttgtgcttgcttgctcgccttagggatatgagaacacccaccccaaaatctctttctttct
aacatgatcaattggcatcgtcacatgataaagaaaaaaaaattaccctctactgatttagatcctgaacatctgctttttttttcttttttttgtgaga
ca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 435 120 NA intron
1056 chr19 61803372 61803676 RIP_Alu_chr19_061_01 0 - Sb19.12 TTAACATCCCTGCAACCCATC GATTATAGTCACCCTGTTGTGC SINE Alu Yb8 aacttccacccaggggctctcagagccagattcgcctagagaaatgcatcttgattcaattctcctccagttctcctgacaagctcaggataaagtctca
agtggagagatatcttaacatccctgcaacccatcactcgccccttgaaacaaaagaaaagcaggagaataagatcctgtgatttgcaacaacatggata
aaactggaggtcattatgttaagtgaaataagccaggcatagaaagacaaactttgcaagttctcacttgtgtgagctaaaaattaaaacaaactcatgg
agatagagactagaatgatgaagaaacctgaggctgggaagggtagtggaagggtggggggaatgtggggatggctaattggtattAAAAAAATACAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAATACAGAGggttgcagtgagccaagattgcaccactgcactccagcctggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaa
caaaccccaaaaaaacaaaaaaacacacacacaaagaatgaataagacctactatttgacagcacaacagggtgactatgatcaataataatttaatgat
acatttaaaaataactggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcaagacc
acggtgaaaccccgtctctaccaaaaatacaaaaaattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggaaggagaatg
gcat UCSC - Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, Carrano AV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specific Alu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.PMID: 9719639.
Library screening NA 0 0 0 NA intron
1058 chr19 62117341 62117342 RIP_Alu_chr19_062_01 0 + pAlu19-62101553 NA NA SINE Alu Y cccgtagtcccagctattcaggaggctgaggtgggacaatcgcctgagcctgagaagtcgaggctgcagtgagctgagatccttgcaccactacactcca
gcctgggtgacaggcagagtgagacctgtatcaaaaaaaataaaaataaaaaaaaggaaattcatggagaactttggactctccccagacttagctacta
atagcctaccaaagaccagcagccttaccaataacacagtcaattaacacatattttgtatgttacatgtattatatactatactcctgaagtaaagtaa
gctagagaaaagaaaatgttattaagataatcataatgaagaaaaaatatgttcactcttcactaagtggaagcagatcatcttaaAAGTCTTCATCCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGTCTTCATCCTCGgtcatcttccattaagtaggcagcggagaaggaggaagaggaggggttggtcttgctatggcaggggtgtcagaggcaaagaaa
acctgtatataagcggactcgcacatttcaaacctgtgttgtttgagggtcaactgtatagtatataatgcaatataatatgtaatataggccaggtgtg
gtggctcacgcctgtaatcccattacattgggaggccgatgtcgggcagattactgaggtcaggagttcgagaccagcctgaccaacatggagaaaaacc
gtnnnnnnnnnnnnnnnnnnnncagtggctcatacctgtcactccagcactttgggaggccaaagtaggtggatcactggagcccaggagcttgagacca
ac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
589 chr2 642672 642673 RIP_Alu_chr2_000_01 0 + pAlu2-642672 NA NA SINE Alu Ya5 ctgggccatacctgggcctgtggggccacctatgagtgcttcccttcacttcacccagaccgcagtgcaggaattgccaagaatccgtgagcggccgtgg
tatccgtcagagcatgggctgctcctgtcctcaggagtctcttggcagatccagggcctttgcactcagggtcactttcaggtcacactgggctgggctt
gactctgcagaccaatctggaaaccccttatgtgtgacatcagcttttcttacctgtcaatatggcatatgtttccattaagccatctttacatctttta
aaaaaattttgtaattttattcataaaaatcttgtacatattttagattagtttcttggaaacttacaattttggttgatattgtaaaagACATCTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGCACATCTTTTAtaaaatgcatttctagctgtctattttgttataaaaacaaattgatgtacattgatctttatatcgagtgatc
tcccccaactctcttgttagtatttatcatctatctatatcttattttggggtttctctgtagaaaatatcatctacgattaagaacacatttttttctt
ctttctttcaaattcttacaacttttgtttgttttgtttatcttactctaggatagtgtttttattttcataagatttcttcttttcttctgagaatgtc
cttattcaacctttattctcaagagttgaattgatggacatggtttctgagcagctggaggcttcctgtctctgttgctggtgagaatttgcctttcacc
tagtcgctgttcctttg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
624 chr2 5159788 5160102 RIP_Alu_chr2_005_02 0 + pAlu2-5214005 NA NA SINE Alu Yg6 cagtgtggtattggcagagagataaacacataaatcgattgaacagaacagaaaatccagaaattgaccaaaataaatatgaccaactgttttttgttga
aagtgctaaggcaatgcatttataaatgaataccctttttaacaaatggtgctggagcagtttaatatttagagttaaaaaaaataattttgacctaaac
ttcacacctcatataataattaactcaaagtagatcttgtacttaaatataaaatgtaacctgatgaaacttttagataaaacataagaggaaacctcag
agattgacagctgggcaatacgttcttagacttgacaccaaaacaaataatctacagaaggacaaagtagtaaattagacttcatcaaAATGAAAATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATGAAAATCTTtggctctgtagaaaaccccattaacaggattaaaaaggcaagcaatagactaggagaaaacacttgtaaactac
atagctgttaagaatgagtatctagaatagatgaaatctcaaagcttaatagtaaaagtacaaatattccaattacgaagtgggccaaaagacatgaaga
gacatttcaccaaagaggattgtgtaaacgctcaataaacacgtgaaataaaaacatgttcaggatcactggctgttagtgcacttgtgcctccataata
gcacccaccattgactggcagcttaaacagcagacatttattttctcacagttctggggctggaagcccaagatcaagcaggactgaattctcctgaggt
atctctcttgggct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
626 chr2 5438380 5438633 RIP_Alu_chr2_005_01 0 - 238888 NA NA SINE Alu Ya4 tgattctccatggccttgacaggtgcatggcctctgccctgggcagtgtggagtcagttcccttccctcactctaggattcccctacttttccaatcact
tccaatcctgcctttcaggtgtttagcagtgtacagagggctgggtgggatggcagaacccgggcactcctgttgacgatgcatccttcacttcctccgt
ctccttccctgtctcctccttttccattactcaagccagctgacctcagaacttcagaaaatgaatgtaaatgtatattgttctcaatatttctactttt
tctgttgtggaaacttcctttgtatcataatattctttttctttgattctccaaatgtagatccttactattttaaaagaagcattAGAAATTCAGAAGA
CACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTA
GTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCG
ACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATTCAGAAGAaactaagacttttttgtttagcaagatttgact
ttcagcctattgtccactatagaattagtagatcaaatttaatatacaaagttgcataataacttctttgctctggaatgtttctgtccttttctagtga
cacagatgtcctgatccgtttgtctggggaactgtagtgtaacatgattttggaaaaaacaggtcatataacatttaaatatcaatatatttttatgtta
tttatatagtatgtatatattatatataatacatatgaaataagtataaacatatattatatatatttatctttttctatctcaaaattttaaattcaat
gttattttaggataatatatatgtttatatattatatatcttaggtatttaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
650 chr2 8567409 8567699 RIP_Alu_chr2_008_01 0 + Yb8AC1121|pAlu2-8621625 AACAGCAGGAATGAGGTGATATG TCATAGGGCACTAAGGAAGTGAG SINE Alu Yb8 ggaaaaaaaaataactatgagaagcaagactcgaaatctaccacaagaaaacaccaacaacaaacggaattaataactctgaacaccaaagaatgtacct
gctctttcattcaaccagcttttattaaactattacctaccagacactgtgggagttactgggatgttggggtgtataattctggatctgtgccctggag
gagcttgtatgggaaagacagacactaaacaaacagttgcgacaccgtggactagccctgtgccaacagcaggaatgaggtgatatgggagccaattcac
ccacttggaggctcaagaacagggggattttgccagatgcagcagggtgatgataggattagacaggatgataatggaagtccAGAAATGTGAGTTACAG
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG
CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAAATGTGA
GTTACAGccacaccttaaggcacacctctcacttccttagtgccctatgagaatgcctggcccctacggctgcagagcagtacaaaggttaacgagatgt
gggaaaccactcagaatttttatgctaaagtcattacatttgagagcgatttcatattggctggactttggtctcagtcaatatgatttcatctggcacc
atttatgttaccaacttaaactggctgctatttccccaaaaaagtatttccctaaaaatcttcacatatatgtctgccttttcatcaattaaggagtatt
tactgcacacctccatgtgttcatatcctatttgacatctataaatgaatcttaaaaagtgcaactaagcaagcgtgtatcagtggcatc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 486 179 NA intergenic
660 chr2 9909835 9910171 RIP_Alu_chr2_009_01 0 - pAlu2-9964070 NA NA SINE Alu Yb7 cagcgttgctgctgaggaggcctggggacccatggccgcaccgaggtatggtcaggcctggttctgacatcactcagttccccagctctgtgccccagcc
acccaacggatgacaccttgccgagtgtggcggctcccggggttgctcctgtggaacagggactccgagcagaaaattctctgaaggcaggaaccaccta
ggggtcttgggtcctgaaaggcgaacatcctctttcgccacctccaggaagcccttttcaatatttctcacacttgggaggctaaggcaggaggatagct
tgagcccaggaggactgaggctacagtgagctataatgacgccactgcactccagcctgggtgccagagcgagaccttgtctctttAAAAAAAAAAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTCGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AACAAAAAAAAAACAAAACAAAACAAAAAAAAAAACAAAAAAAAAAACTGGgggaggggaggcgggcgggacatgtaatttggacatagaaacacacagg
aaaatgccatgtgaagataaacacagatgtgggggatgctttctgttttcccctatggttgatgtttattcaatttatttgttttggtttttctctgttt
tagggatcacccctccccatacaatctgactgaattttacttactgaataagtaacacattaacaatgttacaaaagtttgttgaaacgatgcaaaaaag
gtatactcagggaaatatccttctgtcccctttcccttctattccattccctcccacctctgtaggtaattaatttcattagtttctagtttatctttct
tgtgtttctttttgcaaaaataaacagatttgtatat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
671 chr2 11376973 11376974 RIP_Alu_chr2_011_01 0 - pAlu2-11431276 NA NA SINE Alu Ya5 aaaattgtgaaaaaaatcagaggtctacagatgaaggcagaagactatgatgttgtaaaagttattggaagaggtgcttttggtgaagtgcagttggtaa
gaaagtgttttgttcttattgttctctatgacatcatggttttgtgaagcattatcaatagcagctgagtagatctaatttctatgcccacccatgccag
aaggtggctttgtgatcttggtcagtgtcctcatctataaaaggaagcctttgttgtctactctgggtctcttccagctctgaaacacattgtagaaaat
aaggccaatatagcttcacatgtgatctgcctagcagttactattccaccagaactgttgtatttttatttagaatgttcagattAAAAACATCTGCTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACATCTGCTTAaggaactgagatttatttagatgtataagaaacctaacagataaattttaataactgaaattaaatctgaa
atttattttcgcaggccatactggtaccaattggaattataagaaatgttgacaataactattacctttatattattggctttggaactcttcctaatct
cgtattcctgttttcatcacctgagtatatgaaactcctctattattgtccttatagttaaattagagtcaaattctcttcttcacactacagcgtttac
ccctcttgatggagcactaagaaaagtagtgatcattataagccagcatggattttgttaagaacaagtcatgatagacttttttttcctttcattgctt
ctttctttgggttt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
742 chr2 20588306 20588600 RIP_Alu_chr2_020_01 0 + pAlu2-20634265 NA NA SINE Alu Ya4b ggcagtgtcctaggggaggaccagctgctgaatggagacttggctgttcctgtctcactctgcaggtctttttcccaagggactgagaaatagatgcctg
aactggcttgacagtgccaaatgccaagttctgaggtgtctgggccagaggttgggtctgtggcctggtgatctccaggcctggggaggttgcactctgg
cagtccatggtagaaggtgaggtcaagtcactcacatgctcaccttgtttggaagcatcaagtctgatttcagagctcaggctgaaaacaagcatctaga
acggatccctgaaccggcttctgactcatcctcttcaaattacgctaagatttgtcaggcccctccttcatctttaggccaagtgttAAAATGCCATGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAATG
CCATGTGagtccaaggaggtgggctcgagctgcgtctgcctttgcttcctggagggcggaggactagcccagcagatcctggtggtgcagaaattggaga
gcttggggccactgaaaaagggttcaggccccaatgaaaggacatttttggctccttgtcaaggacagacaggctgcagatctacacacgggatttgatc
cagcccccatctagatccctgtgccctggcaattagtctggttcctgctacctgtcatcagtcctaccacctgcctgggtgtgtgtagtgggtgcagggt
gctaggatttcatgtgtacactgggtaggcaggtttgtggtgggagcagcaggatgggctcagagctcagcactgagggaatgtgtgtgctctt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
748 chr2 21484445 21484735 RIP_Alu_chr2_021_01 0 + Yc1RG72|665 GTAATCTATGGAGGGGCCATTT TTTGGGGAACTTAACCTGTTAGC SINE Alu Yc1 ctacaaaacggctgctgttttccctctaccctctgtccaaaatttcctgagaatctcccttgtgcctattctatccagacatgtacaataaagggaactc
tgggaagtgtagttcagcctacccaagtagatacatcacaaagccattttgccttcttttttttctaagcagcagagttcttattctgataacattcact
gactctgctgtaggactagatataccagcacaaaagtaggctggtttgtgagagatcattcagtcaaggcattgtacataattaatcttagtagtttgag
ggcagaaagagtcagtcatcatttgcacaaatgaagaccttgtaatctatggaggggccatttcaattgctattctaatcacagtAAGAATAAAGCAGAA
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT
GCAGTGAGCCGAGATCGCGCCACGGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAAAG
CAGAAattatgtgacttgtgccatttgatttggctaacaggttaagttccccaaatcagggcacataaccacttaattttttccatagaaaagtgaatgg
acatttttgatgacttggatacctgcttttgaatcaaaacacatagattttaagtatttgtctcaaatattctttcctcagaagtcattgaccatgcctt
ttcttgaagcctagttatacagaactaaagaattttcataggcataaacaaggaagaatttaaattaatgtgtaaaattgggtatcttaacttaggtact
ccactgcagtatgtaaatatcaaggtagcaaatatataactggatagtgttaggtatgagactgcaaagcaaaatgatgtatgtgctact UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 61 414 109 NA intergenic
750 chr2 21708479 21708480 RIP_Alu_chr2_021_02 0 + pAlu2-21754538 NA NA SINE Alu Yd8 actgcattataaacctgaattgaatgagaagtgactaaatgggaagaaatttacctgaaagcaacttgatatcagttttctgctactgagaagaatggaa
gcttaatgatagaaattatatttgactatagaaaaataagttacatttttgcatgtatcagtttgtggttacatttgaatccattatatagtcccagcaa
tttttcttttatggtttcaatttctgatgattttcttttttaatctactagcacttatttgtatgttctacctttgtttctggaaccattcgtcattcaa
ctatttcatcaatagtttttaaaacaatgtgggaaacagtgcaggaaagtcaagaggcagagaagcacttactcactgtagttAAAAGAATAGCATTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAGAATAGCATTCCTttc
cttagtcctttctttctgtctttgcttgctgaaatatcctcccctttcaacctaatcaaattgtattgagtaagacttcatttagattttaccacttcaa
ttccaatttcctggctactcaagcccacgatgtgatcccttcctctaaactcttaaagtatgtgcagtctctaccttcaagttaagaactgaattataat
agcccatctttgttgtctgctgttttcttcaaaataatttcttttctaattttgtcagttagactctccaattcaagtgagctccctaagatcttctttg
aacacaaggtcttacatttagattcaaagtaacattttgatttagaattaaagttgagtgggtttacataacctgggtgg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
800 chr2 28265603 28265898 RIP_Alu_chr2_028_01 0 - Ya5ACA791 GGTATCCACTGATCGCTTAC AGTGATTCTCGGGTTTCAG SINE Alu Ya5 ctcccttatttacccatcctctccttttctgccccaacttatccctgctaaacactcactcgttcttctcctatgaactgtatcaataataataatattc
atggctattacttgctgagtgtttactgtagtgccaggcactgtgattaatgctttatgaacagtattaatataatcctgaaaacaacactaagaaatag
gtattattatgtctattttatgactgaggaaacaagctcagagaagttacattttgtgacagctggtgagtggcaggaaccaggtttaaactagatctgc
ttgactcagagcccttgccttatgccacgtcattctactgcctctggtatccactgatcgcttactaatatgggtcagtattttcaattAAAAAATAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ATAATAataataataataataataataaaacactctttggggccaggcactgtggctcatgcctgtaatcctagcactttgggaggccgaagcgggcaga
tcacctgaggtcaggagttcgagaccagcttggccaacatggtgaaactctgtctctaatgaaaatacaaaaaattagctgggcgtggtggctggtgcct
gtagtcccaggtactcgggaggctgaaacccgagaatcacttgaacccagaaggtggaggttgcagtgagccgagattgcaccactgcactccagcctgg
atgacagagtgagactctgtctcaaaacaaacaaacaaacaaaaaacaaaaaacagaaacattctttgggaggccgaggcagcagaatcacttga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 598 230 NA intron
828 chr2 31863861 31863862 RIP_Alu_chr2_031_01 0 + pAlu2-31909920 NA NA SINE Alu Ya5 aatatcttgcatttattcactgatgtttgagatttatttctctgctaatcatttgcttctgttaaaaacacccgactaagaaaacacccatgaaagatct
gcaatccttgacagttcaatgagaacaaatatgtgtttagtctgtctttctgatcaacattttgaaaagtttttcatgtgggaaaagagaaaagagtggt
aagacaaagggtatatgagggcatgacaccaaatatatataattagaaagatggagaaggcacaagaaagagacactagggcaaaagactaattttccct
gttttaaaggtggaagatgatacaaaaagacttatggtatgattccacttatatgaggtacttatagtagtcaaaaccatagagacaaaAAGTAGAATGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGTAGAATGGtgattgccaggggttaaggggagaatggaatggggagttagtgtttaatggaaatgctttcagttttgcaagatgaaag
agttctggtgatagatggtggtgatgactgcataacaatatggatgtatttaccaccatacgtatacaagctttaaaatggtgtagtcaattatatgttc
tcagaaccacaattaaaacatctctgtggcccctaatatgatgaaattggtcaccacattaaccaatattttcaactttgcaaagcacaccaagagacat
ttttctggtaatctattaaagcttaacactgattttcaatgaacaccattaaaatccagagctcatcagggtttcaatgattttctagtacaacatgtag
taagcattta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
842 chr2 33692951 33693264 RIP_Alu_chr2_033_01 0 - Yb8AC1089 CCTGGGGAACAACATTCATC TTGCTGGACACTTTATGTGGA SINE Alu Yb8 tcatctttataaaattgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattttagggtatgaggatagaaaccagaataaaactaatgactc
actgctgggcaataagatcttgcagtatctttgctgcttgaaagtaaaaatctaagttagaccaaggcaagtgatagagaagcactaatgggaaggtccc
tctgagcactaaacagtggcttccattgagatttgggaagctttttgttcatgcaaaatgaggacgaaatactggaaaacgactggagaaaaaaggcatc
cctggggaacaacattcatctgaaggtattctgtgattaagatgtttctttttgtagttttattatattttttcaaaagctttatAAGATTATTAGAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGATTATTAGAAGAaccatataaactgtccacataaagtgtccagcaacttcttaaacaacagtaatgtatacttgatcatatatg
tacaagtagcaacacattcctaaatgcttagtatacatgcatattgcatttgtcaaatatatttgattcaattgtttataaacttaattaaatgggaaag
atagaggaaagcattcattgaaaaggacaaaattacgttttaagttttctcctcgttttttgtcaccatctatgtgatttagtagagaaaggaatagcta
agtgtgagtgggaagaagtgcctgtgcattagagaaatagtgtgtaggtgtttttctttgaaggaagaagttcttatattcagtattttagctaggcttg
tcccactcagaat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 462 134 NA intron
848 chr2 34555299 34555588 RIP_Alu_chr2_034_02 0 - Yc1RG158 CCATCCAGGAGTCTACCAAGAGT AATGCCGTTTCTGACACAGAG SINE Alu Yc1 ttactggcttattataaaagatatgataaaggagacagatgaacagccagatcaagagttatataaggcaaggtctggatggggtgccaaccacaggaac
ttctttccttgtagcattgggtcgcagcagcctcttgccatgtgggtgcttgccctatcctttttaaataattgtggacaccagacgctctcagaacctt
gtattcttgagattttaatggaggcttcatcacctagacatgattaattatttgacttcttatcagctcccctcccctccctggagaataggggatggga
atgaaggttccaaggttctcatcatggcttggtctttctggtaaccagccccatccaggagtctaccaagagttacctcattAGAAATTCCAAGAGAGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGACGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAATTCCAA
GAGAGTTaggagctctgtgtcagaaacggcattgaagaccaaatgttagaacaaaagatgatgctggcactcctgttacttgggaggttacaagggtttt
agaagcttgtgtcaggaaccagtagcagagactgacctacctacctaccttccttccttcctccctccctcctttcttcctttcctttcatttcctttct
ccctctctttcttttttcctttctcttatttttcaatgatattagcgaatatcatcaataatccacaacaaccgtctttatatattagaaagttattaag
ctccttgtgataaataaaagtctcccagaatttcagttcttcccgaaagctcaaattttatcattgtcaatgaacactgtcaattgttt UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 63 469 162 NA intergenic
851 chr2 34946105 34946333 RIP_Alu_chr2_034_01 0 - 13032 NA NA SINE Alu Ya5a2 aagagcttcaaatggcctaacaacatgttttcctcctgactttgctcccatggatcacgtctcttgtcaagcaaccttccttatcatgggaccagcaccg
tgcttgcttatccctgaggagcaggtttcaattccttcccagcctgcagagctattcaaacaagctaatcacatccttccctgggattcaggggtcactt
tgccacagcttctacttgtccactgttcctaaatgcaatatccatgtggttcttcatggcatgcactgcccttccccccagactgtgagtggatgtgatt
aataattgctatctcatcttcctagtgtctagtgtagtgtgtgtgccattctctcatagccagagggtgtgaatccctctctcatcAAAAGGGTAAGTTA
TCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGG
GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCC
GTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGTAAGTTAttagaggtgattaaaacaatggacaattttttttttttttgagactgagtttcgctct
tgttatccaggctggagtgcactggcacaatctcagctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgg
gattacaggcatgtgccaccacgcccagctaatttttgtatttttagttgagacagggtttcaccatattggccaggctggtctcaaactcctgacctca
ggtgatcttcccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcacctggcaacaatgaataattttttaatggagaaaaaaaaagg
aataaaactacgataatgcaagtaaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
859 chr2 36002173 36002478 RIP_Alu_chr2_036_02 0 + Ya5ACA866 GAAAACCACACCAAATTGCAT CCGCTCTGTAGAAAATGCGT SINE Alu Ya5 ttctagaaataaaatgtttaatacctgaaatgaacctatcactagaaggaattaacagcagctctgacactgcagaaagaaaggttgtgaaattgaagat
acccaaagagagcactgagaaaaagaaaagaaagacttttaaaaagaggaatctcagggacttgtgagttaacagtaagccacataacaaacatataatt
ggaataccagaaaaaaaggaaagaaaaatatgtttagaaatttaaaattctacagttgtccaaaatttttcaaatttggtgaaaactataaaatcacaag
attcaagaaaaatcaaagaacagcagagaacatgaacagaaagaaaaccacaccaaattgcattataaccaaattactgaaaactAGAAATAAAGAGAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAATAAAGAGAAAaatcttaaaggcatatggagaaacaaagacgcattttctacagagcggaaaaaaatgaccacagacacatcaaaaactca
gtgagccagagtcagtgaaatggaatctttaaaatgatgaaataaaaaacaactgccaactagaatacagtcagtagaaatatcttacaaaaattaagcg
atgaagacatttcaaacaaacaaatcagaaagaatgttttgccagcaagtgtgcactaaaataaatgttgaaggaagtgctgcagatacaataaaaatga
taccagttggaaaagagataaccaaaaaaagcaccaaaaattataaatataaaagcatctttattttattttttaaaagtatttaaaaataattggtcat
ttaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 426 106 NA intergenic
866 chr2 36867324 36867627 RIP_Alu_chr2_036_01 0 + Ya5NBC5 TAGGATATTACTGTACAAAGCCGTAGATTT GTTTTAAGCTAAGCGTTATTACAAAAGAGT SINE Alu Ya5 atgttggccacactcgtctcaaactcctgacctcaggcgatccacccacccctgcctcccaaagtgctgggattacaggcgtgagccaccacgtccagcc
tgtattttctatcctatatttttatcattattttagagtatactccttcacttacttaaaaaaaagttataacatttaaccaaaagattttaaaagtaaa
aaattttaaaatctcaaaaatagaaaaaagcttatggaataaggatataaggaaagacaatatttttgtacagctgtaaaatgtgtatgttttaagctaa
gcgttattacaaaagagtcaaacagttaaaaaattaaaaagtttataaggtgaaaaagatacagtaagctaagattaatattatattAAAGAAAAAATAT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
AAAAAAGAAAAAATATtttttataaatttagtgtagatgacgtatacagtggttataaaatctacggctttgtacagtaatatcctaggccttcacactc
actcacccctcactcactgactcacccagagcaacttccagtcccgcaagctccattcatgctaagtgtcctctaaaggtgtaccactttttatctttta
tactgtatttttactataccttttttatgtttagatatatttcgatacataaatatttatcagttgttaacaattgtttacagtattcagtacagtaaca
tgctgtacaggtttttgacctaagaggcaatagaccatatcatacagcctaggtttgtagtagaccatctaggtttgtgtaagtacactctacaatatcg
gca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 476 163 NA intron
880 chr2 38763084 38763379 RIP_Alu_chr2_038_02 0 - Yd6JX90|20509 TATTTGAAAACTGACCAGCCAAT CATCATCCAGGAATAAGACCAAA SINE Alu Yd8 ccgaggacaagaagtaatttggagatagccagttaaacgtttaccagcacacactgaatagaggcatgtgctgggacaaagagccgtgtacttagagact
tcaggatgaaaatgcaaatggacaaaaccatcaactccatcagtgggggcagcagaataccatgagtggcagagaaaggaacattttcattcaggggtca
tcatccaggaataagaccaaactagtccttccacagcagagaccagcaaagatcctggataccaactggatctgaagcccctccccctactgccccagaa
tgctgcaatccagtatcactgagctgccatcctgaggatgccactggacatctgtccccatgactcagtcatccagaagactgtttAAAAGCCGAGACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
CCGAGACTAtgagacttttgattggctggtcagttttcaaatagttggaatctagaatccagttctcatcttagattcacttttccaccttgacttttac
tcccccttagcgaggcacacattgtcttctggtgctcacaggccatagcagttaaagtggtagacatctatttgtttctgtctttttctccatagtgacc
agtcctgatggactattcacaatcgctcctccttggcttatcaggcctcatgcaaatcacatgctgtcccaaatgaccagtgaactgcctccgaaggaac
caaagtgacaggggctgtggagctgaggacctctctctaatccctccaggctgaaaaattaatggcccactttttctgatggtaaaataataatt UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 60 545 236 NA intergenic
882 chr2 38983141 38983470 RIP_Alu_chr2_038_01 0 + pAlu2-39029100|Ya5ACA828 GTGAGAACAGAACAAAACAACACA CCAACTTGAATGCTACCTCCA SINE Alu Ya5 ggctattctttcagcccaatcattcttgttttatgtttcatttctctatgatttcctataagatttcatttgcataaagtgtattgtagctttttaaaaa
aaagatttaaaaacctatgattctataatcctgacttcctccaaccccttctctccattaaatgccaacactcttttcacattcaccgtttgtttgttta
ttgaatatttactgaatgcctattttggacaagggactatggtgacggtggtggtatggtatagaaaaataagtatactttcaaggagcttacaaactag
tgagaacagaacaaaacaacacactatactgtaagacagaaataaatgttattagaggcacaagaaaagtattctgtgacttctaatAAAGAAATGATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGATTAatttttaatagcagaaaataggaaatttcatggaggtagcattcaagttgggtgttaa
agaatgactagagaaggaagtgggaaaaagaaatacagatagtaatagtatggcatctttcagaaataacaagtagtctgagagtgctaaggttttatag
gtaggaaactaaagaaggaagggaacttaaatattggctggggtcagatgatatgggcctttagtgtccacaaagtgtgagtgatagggaaccaatgaaa
atttctaagaataggaggaatgtgaacaattctatgtttaaagataattctgagcctgggcaacatagtgagaccttgtctctactaaaaataaaaaaat
tagccaggcatggtggcacacatctgtag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 55 494 152 NA intron
884 chr2 39226990 39226991 RIP_Alu_chr2_039_02 0 - pAlu2-39273037 NA NA SINE Alu Ya4b gacaaatactatatgatttcacttctgagatacctagaatagttcaattcatagagacagaaagtagaatggtaggttccagagcctgcagggaggagga
attggggagttattgtttaacaggtgcagagttccaggccgagatgatgaaaaagttctggagatggataatggtgatggttgcacaacaatgtcactga
attatgcatgtagaaatggttaaatggtaaattttgtgttgtgtgtattttaccacagttgaaaaaaaaagtcacttccttcgctccatctcaggcatac
taaagtagaatttctagtggtcgggcccagaatcctgcgtttaaaaaaaaagaaaaaagcttttcagtttattgttatgcatggtttAAGAACCACTGAT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAACCACTGATatgtgggattatctaatggaaagtggggtaaactggattttgttggtattatctttaaagagaaatttatccgattgatgaat
taaagtataatcttcatctagatttttatgtttaattcagctgttaatatttacacattacttcatgtggtaatgtgaataatgactactaataattatt
tagcattctaccacattttaaagcactttcggctgggtgcagtggcctgtgatcccagcactttgggaagccgaggcaggaggattacttgagcccagga
gttcaagaccagcctgggcaatgtggctaagccccatctctaaaaaaattttaaaaattagctgggcatggtggtacacacctgtagtcccagttacgct
agag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
886 chr2 39504227 39504535 RIP_Alu_chr2_039_01 0 - Yb8NBC189 GGAAGATTTGAGAGTGAAATACCC ACATCATGGCCTGAACTAGTTTTTC SINE Alu Yb8 gttctcaggtctcctgaggactctttcatgggccattggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttgactcctttca
cgaacaactgaagtactgttaatttcatttattgtttctaccatatgaaatggagtttagaaattatgtattttgaatgacaccacacatgaaattaaaa
gttaatttgaaattgactttaaaacacttttacatgtaacgtagatgtgtgttctcacttctctgtgtttaaaatagaatggaaatgggaagatttgaga
gtgaaatacccataacaatggcatgagaaaccttgttgatttttcgtagtctaagcttacatttttctcttggctataggacattttAAAAATTACTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAATTACTATGgcgtaacccaaaaataaaattctaagccccccaaccgactgatggaggctctcctcagccaagggcattccaaagttaa
cctgaaaaactagttcaggccatgatgttaccatcataatgagactccgacatcctcattataccctcctccctttggaattcaagctcagctgaccaac
attaacatttaaatagagatcttaagactagtgaacagactttttatagcaataagacacagaattccagcctgactctagtatagcatcacatgacaga
tagcaggccctgaaagaaatagaagtattttatcccaagtatatttctttgatatattttgaaatggtcctgcaaagccgtctcttgtgggggaaatctg
tattctat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 67 541 220 NA intron
896 chr2 40889801 40890122 RIP_Alu_chr2_040_01 0 - 9004 NA NA SINE Alu Yb8 aggatactgtatttggaatcaaaatcctgggtgagaatttttgctttaccactaataataaaacctaagggagtgattgaaccaattcagcctgtatttc
ctatctgtaagagggaaaaataatgccttccctatgttactttcacagttgttgggtagatgtaacttagggccatggaagagccctaactctaaatcag
aatatctaagttccattcctgactctatcactgatgcccttcataaccttaattacaacacttttctgatcttttcctcatttggcttacttctaaatga
aaggctaagtcacatgtgtcttattgatattagtactttctagttagattctaaagtaatttcaaacttacagaaataatgtgaatagcAAAAATAATTC
CCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGCGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCGGGGTGACAGAGCGAGACTCCGTCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATAATTCtcatactttatgcagattcaccattttttaacattttgtcacaattgttttatcattcttccttgcat
atatatatacacacacattgtgatatgtatatatgatttacatagaaatatatatttgagaacattacatatatcatttccatttatacttcattatgta
tttcctaaggtataaaacttacactaacttcactgaagtattcaggtttttaatattttaactataagcaacacatgtgaattatactgtgaaatctaaa
gcactactaaaattataaattgtttttcttaagaaactagcccaaaaatattttataaaagagctagctatttttcaaataaaagattgaacctacattt
ttatagatttggaaacattgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
904 chr2 41854250 41854566 RIP_Alu_chr2_041_01 0 + Ya5ACA912 CCATGTCAGTAGCTTTCACG GCCTGACAAAGATGAAACTG SINE Alu Ya5 taaacatcagcactaaaaatacaagtagttacaagaagtggcctccaggaaccagaactgagggaagaagctacacgggactggagccagttgcttttct
cagaaacccttctgtaatatttgaatcattatcttaagcatacctttctttgcaaatttaaaaagattaaaatgtcataaatgtagaaagcaaataaggc
cataaaggtaaaaataataataataataattgtgatgagagggcaggagacggggtgggagggaatatggctgtgatggacatcatccacgtgcaggaca
gaatcacagaggccaccctgtaggtcagcctggcagcattcagcgtccttgtgggctggcccatgtcagtagctttcacgaacaaaacacAGTCACCCAG
GCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTGTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGTAGAATGGCGTG
AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCTGTCTCAAAAAAAAAAAAAAAAAAAA
AAAACCACACACACAGAGTCACCCAGtctcatttcagtttcagtttcatctttgtcaggcccagccttggtctccagtcctgactcttataatgaccttt
ctctccaccccacggcccaatagtcacatcttccacattgtcctagaaatcatgtcatttccaatttctagaaggtccttggcatccaaagcaattctgg
ggtcctgagtcaacatcttcctcctataacctctttctctttttcctgtttttccaaaaggaaaccaatgctcctaaaagtattttcttaagcaagctct
cagttgcagagagctctgagtccctaacatttggaccttttactgttttctcacatgttaaacactgtatcccaatgtctaaaatagtaagaaggtcaat
ccacacagaaaatgca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 400 74 NA intergenic
917 chr2 43570633 43570945 RIP_Alu_chr2_043_01 0 - pAlu2-43616594 NA NA SINE Alu Ya5 ggatattaatccaggagaaatgaaaacgtgtccttaaaaagtcttatattagaattttatagcagctttattcataatagtaaaaaaaaaaaaaaggtaa
agaacccatgcctgtcaagaggagaattaataaacaaacttacagattcatataatggaatactactcaacagaaaaagaaccagactattgatatattg
aataacatggataaatttcataaactctgtgctgagtgaaaaaagcaagccaaaaaaacgtattattgctgggcacagtggctcacgcctgtaatcccag
aactttgggaggctgaggtgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctccaataaAAGTACAAAAAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGCGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCATTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGTACAAAAAATTatccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgc
gaggcggagcttgcagtgagccgagatcccgccactgcattccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaagtacaaaaaattatccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccagg
agatggaggttgcagtgagccgagatcgcaccactgcactccagcctgggcaacagagtgagactccgtctcaaaaaaacaaacaaacaaaaatgtatta
ttacatttatat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
115 chr2 44695252 44695559 RIP_Alu_chr2_044_01 0 - Yb8JW684|3922 GGTAGCATCTTCATTGCAAAGTG CCACTGTGCCTAGCGGATTA SINE Alu Yb8 agtggacatttctctgacaaataatacttggaaaccacattatcattaatgatgaatgaatcctatgtctagaaaagttaataaacaaggcatttcctca
gtgaaaagagttaaagcaaaccacataggtgaaagtaaaaaagataaaacttttgcatgctgttgcattccagcagggagtgggtagttcctgtgcattt
tctccctgaaataaacttacatcatcctcacttgtatcattttgtaaattttttttgtagagacggggtctcattatcttgccaggctggtctcaaattt
ctgggttcaagggatcctcctgcttcggcctcccaaagtgctaggattacaggcgtgagccactgtgcctagcggattaatcctttAAAAAAAAAAAAGA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAaagaaaaattggctggacacggtggctcatgcctgtaatcccagcactttgagaggccgaggcaggtggatcaccagag
gtcaggagttcaagaacagcctggacaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggcagccacctgtaatcccag
ctgcttgggaggctgaggcaggagaatcacttgaacctgggaggcggaagttgcagtgagctgagatggcgccactgcactccagcctgggtgacagagc
aagactccatctcaaaataagtaaataaataaaaataaaaaataaaaaaaattgtaggtatttttaaatagcctttcactttgcaatgaagatgctacct
ataacac UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 60 740 420 NA intron
962 chr2 49524549 49524856 RIP_Alu_chr2_049_01 0 - pAlu2-49570505 NA NA SINE Alu Ya5 gaatcaacctaagtgtctattaatgggtgaatggataaagaaaacatggtatatatacacagtggaatactgttcatccataaaaagaatgaaattctgt
catttttgacaatgtggatgaatatggagtacaccatgttaagcgaaaaaagccagacacagaaagacaaatactgcatgatctcacttatatgtagaat
ctagaaaagaagaaaaaagaaaaagttgatatcatagaaacagatagtagaacagtggttaccagaggtggggaagagaggggagagaggaagacaggga
aagctggttcaacagctacaaagttataattagattggaggaataatttctagtgttttacttcacagtagggttgctatggttAAGAGTAAAAATATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAGTAAAAATATTGtatattaaaaaatagctaaaagagaggcttctgaaggttctcaccacaaataaataaataatgcatgaagtgataaa
tacacaaactaccctgattcgattattacacaacataggtatgtattgaaacatcaagaacaacaaacatatcttataaatatgtaaaattacaatgtgt
caaacaaatcaatatttttttataaaaaggctaatgactgcattggaatgaacaagcaagaaaatagtaggagatgatatctcagcagtgggtaggacct
acatcaactagatcatataggatcttgagggtcatagaagtaatttgtattctattctatttacaatgaaaaatcatttaaggtttttaagcagaggagg
gtcatga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
971 chr2 50620551 50620856 RIP_Alu_chr2_050_01 0 - Ya5ACA807 ATCTTTTTGGGGGCAGTTTT TCCTGTAGTGAGTTTTGGGGA SINE Alu Ya5 aggaatgtcacaggtatttaaactggctgtcatttggatgagacaaaaggaaaaaactgaaactgtttgtacccaatttttacctaaaggtaaatttaaa
aatttaaagccattagatgaagttagcttggcatggatttatatccctgaactcgcaccccatctgccacactgttactggcatagagtgggtttaaaag
aagatggattactctacacgctcccatagcaatttcactttattatttcccatttagcatgcccaccaggtttcctcacagtctgttggccaaacataca
aacaaaatctgtcttcctgttgtaagtttcagaatcatactttaaaaaaatctttttgggggcagttttgtttcaaaatttaaatAAGAAACAAAAGTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAGAAACAAAAGTTCagaatattgaaagaattatatgttctgttgatatggataataacaatattaactccccaaaactcactacaggaaaacgt
taaggtctaaactcttatcttcttggggttgcccctccccaacttgtcccacgtaagtgctggtttgtactagattgggccatggatacatacaagtgtc
tgatttatctctttgtgggagacaattgaaaagtaactgctgtatctaaaaatcaaatgttgacttttggtaaaaaacattttgataaaatttgatttaa
aaagttttgaacataagaattctacttatgtatcagaatttgaatacctaatatttataattatggaagaaaattgactttgcctttatgagattactcc
attat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 445 125 NA intron
1001 chr2 54605145 54605393 RIP_Alu_chr2_054_01 0 + 13482 NA NA SINE Alu Yc1 actgagtggttgtttgaagaagctttcaggattaattgtgctttgacatataaaaataagatgttatcaagattgctttaaaactgacccttgtttatag
gagtcatacgtccattcttaagaaactctcaactgtgacagtaaacatctgagtgatttttagaaccattttaatatctctgctctagaatcgagaatgc
cctgttagttctgatttttaatatacaaatttgaagccactagttaggcagtaaaatatgtattagaacataactatagatttttacccaatagatcaat
tagtatgaaatttaggatgatatataagtacaacagaatttattcctttgaggtatgtattttcaaagtgtaatttgtgtaattAAGTATGTTTATTCTT
CGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGG
AGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCG
TCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATGTTTATTCTTagaaagttcatgagcctattaacattggttatcttg
ggtaatggaattgcagaagatttcatctctgtatatttttttctccatattttttaagttttaggaaataacaaattcttgttctttatcaaaaatatcc
taacacttctgaccaaacctcattttagctggatacaaactaatcaaataatttaccagctaaatatactttctgctgttcaatttttttctaccaaact
tacggaaaagcagtattaataatgaagatataaagaacactgaaatttttgaaagatcttttcattccttgtttaaatgttcatttttgttacagccttg
gcagttcattacttatgcagagtgtgggaaaagctctaagaactggcc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1012 chr2 55995193 55995494 RIP_Alu_chr2_055_01 0 - Ya5ACA877 AAGCCTCCCTGGAAAAGTGT TCCAAAGGATGTTTGCATGA SINE Alu Ya5 cgtaaacctcgttgttccaaacactcaaccaagatcctgactcctaataatgaatcatgtggtgaaaaatctcactccatccatcagtttatttacctaa
ccttttttctctctttccttactcctcttcataaacatggatacaatggctgtttaaacaccatatctacttttaaggaatatacagtttattggagaga
caaagtaatcaaataatcttacagacgaatgtaattttagaaattacatgttaatatactttgcacattgcaactgtgacacgtgctacaaaaaaaggaa
tgtggtgctacaggagcctataaggagaaactcaaatgacctactcaagcctccctggaaaagtgtctcttgaactgagatcttAAAGATGAGTAGGAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGTCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGATGAGTAGGAGTtaactacataaaataggtagggaaaaacattcagaaagggatctgctcatgcaaacatcctttggagggagggaacattttct
gggacccagtccaatcaaccaaaataccagtgtagctggagccacagataaggctggctacagtataatctataaagagtaaaaacacaactttaaagta
aagaagtagtaaagagcaaagtaaagagtaaagacacaactttagagtaaagaagttgtgtctttactcttatatcaatgggaaggtatttaaatatttt
aagcaggtaagtaacaatcagattcacactttggaaaaattccgtttagcctggagataggttggaagtgggctcagatggatgcaggttagaaagctat
t UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 437 120 NA intergenic
1021 chr2 57254394 57254707 RIP_Alu_chr2_057_01 0 - 18879 NA NA SINE Alu Yb8 tttctaccaacagcctacatataacaattaaagtattctctgagacaataagtttttctcctgtgctcctcacttcctactgcaccctcactagaaaccc
tttgaatgcccataaactaactaacattctgttcaagactccccaggcacttctataatgtttcttaaacttctttcagcctctacccattacctaattt
taaagccacttccacatattttcgtatgtgctatagaagtaccccactttctagtactgatatctgtactagcttcctattgctgctgtaacaaactgcc
acataaaaagctgccaggaagtaccccactttctagtactaatgtctgtactagtttcctattgctgctgcaaaaaactgccacatAAAAAGCTACTAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGCTACTAGCcccgggagaggggctgatgtatgcaaagtgcagagaaagagagaaagagatagatagagagagacagagagag
agagagagagacattgcctggtgttcaaatcataaggtggatcttagcactactgcaaaactagttatgaggctttaaaaaagaatgtacaatgagtcat
gtgctcttataatttaaaaattcataattagaggcatttgtgattgtgtgttgcaaaggaatccctcaattagtcttatgtacacctcagtccatctcat
aaaaacattagggaaacatttctaccctactaaatgattctataaactgaaaactgaaagttagtttttatatttttttaatattttatagatctttaaa
aagttaagtgtgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1070 chr2 63690886 63690887 RIP_Alu_chr2_063_01 0 - pAlu2-63736931 NA NA SINE Alu Yb7 acagtgtctagctattttttaagttgaattacttctttattactttttaaaatgcagatatcttttaaacacttgttacttagtatgagaataaatcttt
aaaaattggcattttattactgctttctggaatctttaaaattaaataatttttatgcattagagtaggtgtatatatatctctgggaataactggaata
aacaacataaaagagaaagaatagagaaaatttattttttataagtcttcattctgctcagtttaacagtgcccaaatacagagtaaatattgatactag
tgaaataacttttcacaactttttttgggtactataatagaatacttggattttaaatagaatatagaatataaaatattgttttaAAGAAAGCAGGGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAGCAGGGCCaagtgtggtggctcacacctgaaaatccagaaccttaggaagctgaggtaggaagatcacttgagccc
aggagttgagaccagcctgggcaacatagtgagaccctctctcttaaaaaaaaaaaaaaagaaaatgaaagcaaaacagaatattcatatttaggtttat
actaggataagaagatttaagaaggaaagactgtgatggggataggttagaaaaggacaatgacaaatctggcacattataaaaaaatcacccttttcaa
atgggtgccttttatgtaacaaataattcacatacgtgtctttggttttagaaaacaaaagcattatgccagcattttgcttttaacatattttgagtct
tatttgccttaatattat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1080 chr2 65011697 65011698 RIP_Alu_chr2_065_02 0 - pAlu2-65057746 NA NA SINE Alu Yb7 gcttttagtttgtttatgtgggttgtacctctcaatagttaccagtttgtagattaaaactgaaccggcctggccaacatggggaaaccccatctctact
aaaaattttaaaaattagccgccctgtggtcccagctactactcgggaggccgaggcaggaaaatggcttgaatctgggaggcagaggttgcacagagcc
aaaatcgcgccactgcactccagcctgggtgacagagcgagactctctgtctctcaaaacaaaactggccaggcgcggtggctcaagcctgtaatcccag
cactttgggaggccgaggcgggcagatcaggagtttgagaccaacctggccaatatggtgaaaacccgtctctactaaaaatataaaAATTAGCCAGGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAATTAGCCAGGTGtagtgtcgcatgcctgtagtcccagctacttgcgtggctgaggcagaagaatcacttgaacttgggaggcggaggttgcagt
gagccgggatcgggccactgcactccagcctgggcaacagagcaagactccgtctcaaaaataaataaataaaataaaataaaataaactgaagcagtca
cggtggcccatgcctacaatctcagctacttgggaggctgagacaggaggatgcttgagcccgggagttcgaggtcagcctgggtaacacagcacagacc
cctgtctcaaaaaaaaaaaaaaaagaaacgtttaaaaagtgtaaaataaaatagaaaccgacggccgggtgtggtggttcatgcctatcatcccagcact
ttggg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1082 chr2 65245453 65245454 RIP_Alu_chr2_065_03 0 + pAlu2-65291512 NA NA SINE Alu Yd2 cgtttttgtagaagatatacatgattttgtattttgtcctttttgatttactttcaaaaatatgctaaagtgaaaaccacgtcacaatttagattaaaat
tatttacatgtaaacaagacataaaacttattttttttgttttaattgcactgccaaagaagagaggatataaaacttctataagcgattatctttgtga
atattcaactattacgtaggtttacataatgatatgcattacttaaaacattgtttgggttttagcaaattaccatattatacttattgttatacttatt
gtctttaattatatatgaggaaaataattttttaaaaatcccaagtgccagtcagcagcaaaatagaagtcagagaaggaaacaaaAATCTTCTAAACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGTC
TCTACTAAAAATACGAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG
GCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATCTT
CTAAACAAGgtaaatcagaagaggggactgaagcatagaatgaactagacatcctttccagtttgagattttaaaatttttaaaaagatcgctattgtag
aatattatccttaataaatgattgatacctaataccaacaatttgtacttggcagttcagctggctgactttactactattgataaggttccttcttaat
taaaccaaatattcttctttctttttttgagacagagtcttgctctgttgctcaagctaatttttgtacttttagtagagacgggatttagccatgttgg
tcgggctggtctccaactcctgatctcaagtgatccacccgccttggcctcccaaagtgctgggactacaggtgtgagccaccatgcctggcccc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1086 chr2 65719170 65719468 RIP_Alu_chr2_065_01 0 - pAlu2-65765124|18653 NA NA SINE Alu Ye5 gctttcccatctcttctcctcatgaaagttcccaatatgtatttcaagtggcacagggctcttgagaggtcaacgagttgcctacagcattggtcaaatg
ccaaatcaaatatgcatccttcttctgaaactcccctgccctacctcagtcccctgtccctcaccccagcttcctctcgggctctgctttctggtaaacc
caggcggctgagctcagattatctgaggtggcacattttaatggtcggttcttattgctcttcctttcccttttctctattttctaattattcttacaat
aaacacatcttaatctcacaattttaaaaccttttttttccccctcaagcctataatcacatctccaaggctagtttacctatgttatAAAAGTAACATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAGTAACATGatattaggattaggggaaagtgcaggcatgtgacattaaacattgctagcaaaacacatacccaacacaggtatgggtagtggggagcag
gaagtcggagagagggagacagttattcttcctgattgtttctggatgttctacagccagctctgaggctgcttctcagaagaggaaagaatcctgtgga
gaaagaaaaggaggcagggaggcagggatggagggggagaaggaggatgggcatcctgtcttcctttgttctccagcctggttccctgagacagtgggga
ggagggccccttctgctccaggccttttgttcagcagaggtgctaactggttggcaggcccaggaaaaaggcagactcagaggggagcggagaaggct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1149 chr2 74037145 74037146 RIP_Alu_chr2_074_01 0 + Ya5ACA917|Ya5-MLS48 TGGCCTGTTTTCACACCTTT CCAAAGCAACTTGCACCTTT SINE Alu Ya5 ttttgagggggacaaacattcaaaccatagcaccgcctgtgtgttaaacacccacttaggtgctggggctgtaaaaagtaaatctaggcgtggccctggc
acaggagggactccatttcatagagagaaaagaacacagacccttttgttttagggtgcttgctgccaaccgctctggagagacaggctgaagcaaaaac
accaaacatggagaagttatgacagttccccaaagtagtgacgaaggcacatctcaggcttgggaagtgtcctcggtgggtgccaggcctgcctttccca
gcctcttctcggtgaagagatctctggctaagttctttaccttctctgagatttggaacatactgctgtttcacctaccaaagcaacttGCACCTTTTCT
NNNNNNNNNNGCACCTTTTCTattgtattaaatatttcagtttctccattgtatggaggcttccagcaattagtttacaagccaacttatttactattca
gtaactttttttgatattgagattgttcctaattttgatcattttaaacaaaggtgtgaaaacaggccaaatcttttcattcactcatgaccatttcaca
aagatagattcgtagaataagtattttcaaattccctttcagaaaagtagtacaatttaacactcacaagcagtgaatgtgaagccaattctccatacct
ttgccagcaagggtggccccaagaaccacacacagtaccccagctaaaggcaaaggtagcttttatcctggccatagcacactgctgatggtcaacaaga
caccaagtcc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization|Candidate screening NA 60 500 171 NA intron
1179 chr2 77888439 77888746 RIP_Alu_chr2_077_01 0 + Ya5ACA839 TGCGTATGATACACCCTCACT CTCACACATCATATGGGCAAA SINE Alu Ya5 agggatagcgttaggagaaatacctaatgtaaacgatgagttaatgggtgcagcataccaacatggcacatgcatacctacataacaaatctgcatgttg
tgcacatgtaccctagaacttaaagtgtaataataataataataataaaattacagtggttatctttatgtggcaggattatagatgagccttatattct
taattttctgcattattcatattttcggtgaagaacatgtattattttcataatcagtaaaataataaaggttattaaaaaacagtaaaaaaaggtatta
atgcgtatgatacaccctcactatggagtacaatgaggttagaaggaacaaatttgaaaagtcacagcagatctgattcaaatAAGAGTCCAAAATTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAGTCCAAAATTCCTtccttctttttatttaacaagagtgaacaacagaagtatctttttcaaatatcatttgcccatatatgtgtgagtc
tgtttctggaatgttcattctgttctactgatctattttacagaactcgacatgctaccacactgccttgtttaccgtgactttataataactattgaca
tcacacagtgtgagctctccaactttgttctatgttttcaaagttgtttttgttattctaggtccactgtatttctatatggattttagaattcatcaat
taaaaaaatgtatctgctaaaatttttatttggattacattgaacttacagaaaactttggagaaggaacaacttaatattggatcttcttacccatgaa
cataata UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 498 174 NA intergenic
1187 chr2 78969313 78969638 RIP_Alu_chr2_078_01 0 - 9831 NA NA SINE Alu Ya5 atgatggactgtgtagatatttgcattgtggaaaatgaacttaaggaaatcaccaataaaaatacaaaagatctgataggattgaaattgtaatcaatgt
cggtaattaattcaccataaaggaaataccaggagagctaaaatcaattaaagagatgtctaccttattgataaatcagagaaatcaaaattatatcaac
cctgaaataccacttcaaactcagagtgggaaaaaaatgtattgtcaactattgagaggtagtagagaaatggaagttctcttgttatgctagtgggatg
ttaatgagtgtgttcaatttataaggaatgtggcatttcctagacaatgaagtccagtgttgtcaaatctatcctacatgtgtaaccttAAGAAACTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACTCATacactgacgcatggagatattcacgagagtgttcattaaggatttgtttgttctagcaaagttg
aaatacgtcttgtccaccaaatgaaaagaagaatgtgcctgtccttgaatatgacacagtttttcctgaagtaactttaaataaatcttgttaaacatta
taaatatgaaaagtaggcaacaaaaggagacatatagcacaatcccaattactaaagtatgagtattcaatacagagtgtgggtctataagaaaactggt
gatgttagaaatggacctgcaggtgcaggataaatgagaaacactgataaaataatgatagtgacttattaaataaggataatcattagcacaattctca
gtctctggaatccttaagcaaagga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1208 chr2 81665270 81665567 RIP_Alu_chr2_081_01 0 + Yc1RG179 ACTGCTGTGAAATAAGTGGTGCT GCCAATGAGTGAGATGCAATAA SINE Alu Yc1 taaatctctctcatttggttcaatggccaaagcctaaatcaattaagagaaatttaggtgtataagtcatcctaaggtatagctgtacttaagtcatcag
ttagagatgaggaaactgaggctccaaaaggttaaatgacttaattgcaatctaagcagagttggttcatggtataggcaggcctagaactcaaatctgc
tgattttcagttctgttttcttagaaacaatactacctcctgtgtcctgattagaaaagcataagtcacgctccaaagtgaccctctaacatgacaaagc
ttacaataatctgcttagactgctgtgaaataagtggtgctaaaagatccgtcaatgggatgaaataaattataacataaactttaaaaaatAACTTGGC
AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAC
TTGGCctgcttggatttttgtttaatattttaaataactacttcaaaatagccctttcaaaggagagcacttttttttcctagaaaaggaacccattaat
gatttcgaaaaaattaatttattgcatctcactcattggccccaaagaagactaaggagattagatttagcatttggaggagtggaatcaagaaaagaca
aagaatatgaaacattgttgaagaagagcaaatatttcactggtagcaaaggactgtgacagttctacctatgtgataaatagacccaatattcttattt
ttccccatgttttaaatttaactaaacaccaatattcttgttttccagtaatgttaatattaatatcttgaatatcttaaaaattatttcatgaatc UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 62 522 217 NA intergenic
1212 chr2 82252116 82252423 RIP_Alu_chr2_082_01 0 - pAlu2-82298076 NA NA SINE Alu Ya5 aaggtggattctgtttttcatctagttaaattcccagtgttactccctactggtgtttccactctgaagctcacataattatagtgaacatgaattcctt
cttattggaagaatttaactcttttatcttattatgtgaaacaaagcttagtaagagaaaaaataaggcagtatatcctaacagatatatcaagcgtaaa
ctccccaaaagagtgccggggggaaaaagcactattaatcaagcaaagctaatagtgttagattttctgcagaaatgagaataccatctcaacaaactct
tagtagtgtctcaaaagtgaaaaaattagaggaagattttaataggcagaacagacaatagtttatggggctcagagaatagttaaaAACTGTTAAAATA
GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGTGAAACCCCGT
CTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG
GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAACTGTTAAAATAtgattaagaatttcaaaatggtgacagcataacattaagccacctcatggctatacaggtcacatgcactgtgaagccag
cctgttaacagagttttagggcctgagctgagaatttttaatgtagtttgtgaaagtagaaaactggctaggattaagcacaatgtatatcatgatattt
ctggattagtggacagagtaatctgaggatcttgaagtgagctttgatgaacaatctattagtgttgaaaagtaaggtgttttacttggtttccagcctg
aacttcctggatcaaaattgctacattaagtacctatgttatttttgcttgttttcagtattatttagcatagaaggaggaaagtattcctggccacaga
attacta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1230 chr2 84640413 84640414 RIP_Alu_chr2_084_02 0 + pAlu2-84686466 NA NA SINE Alu Yg6 gaagggatgttgaattttatcaaatgctttttcagcatcaattgaaatgatcatatggttgtgtcctttcttctgttgatatggtgtatcacattgattc
atttgcatatgttgggtcatccgtacatcccaaggataagtcccacttggttgtaatgaatgatctttctaatgtattgttgaatttagtttgctagtat
tttactgaggatttcttacatcaaaatttatcagcaatattagcctgtagttttctttttttaaaatgggtctttctctggttttggtatcagtgtaata
ctggccttgcagaatgggtttggaagtattccgtcctttcctagtttttggaatagtttgagtaggattgggattagttcttctttaaAAGTTTGGTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGTTTGGTAAAGgttcagcagtgaagccttcaggtcctgggtttttctttactgggagacttcttattatgactttgatctcattacttgttattg
gtctgttcaggttttggatttctttctggttcaatcttggtaggttgtaagtgtctagaaatttgttcatttttctacattttccaatttattggcatgt
aattggtcatagcagccactaatgatcctttgaatttctgcagtatcagttgtaatgtcacctttttttatttctgatcttacttattgggatcttctct
cttttttcttcattactctggctaaaatttgtcacttttgtttaacttttcaaaaaaccaactttttgtttcattggtcttttctattgtcttcttcgtt
acaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1230 chr2 84670111 84670391 RIP_Alu_chr2_084_01 0 - 238297 NA NA SINE Alu Yc1 aaactatgaaaacattttcacatatgaatcaagaattatgttttaaaatcaccaaataacccactttccatcagtttccacttaagatctacaagttctt
caccaaaaacttacaaagaactatacaagcgagtaaagtagtggtaggaatgacaatattattaagggttttttttaattgaagggctttaaattacatt
atatgttaattcttccatcttaaaaaaatgaattctctcatgttggaaaaatcctctttttttaccccaattctccttcgtctaccatctcttctccttt
tgacatcccaaaattaatgtatccgaacccaaacatgtatttttccctgatgattctgctccattcagtcttctatgtctcagttgtAAAAGGAAAATAA
GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC
CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAAAAAAATAAAAAATAAAAAAAAAAAGGAAAATAAatcttga
ggcccccaaatcactaaacgaaaggtaaatgtcaagctgggaactgctaatggcaaacctgcctcccattctattcaaagtgacccctgtgctcactggg
ataaatgcatatctcattgcctcatttggaaaggctaatcagaaactcaaaggaatgtctctcatctacctatgacctggaagccccctcctcgctttga
gtttttccatcttggccttgagttttcccacttctccagactgaacccatgtacatcttacacatattaattgatgtctcgtgtcttcctaaaatgtata
aagccaagctgtgcccgtactaccttgggcacatgtcatcaggacctcctgaggctgtgtcatgggcgtgcctccatgat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1235 chr2 85247028 85247333 RIP_Alu_chr2_085_01 0 + Yb8JW658 ATAGGTACACGGTTGCAGTTGTC AATGAAAGGATGCATCTCGAAG SINE Alu Yb8 aaaaatcatgaactctttgtatgttaggagtattagtgtgttatgacttgtcaataccttttgacagtttgttaatttcttttaaatattttaggtcttc
ctctctctctctcccttcttctctcatgtttgcaaataatatttacatttatatagtaacagttatcagtcttttctctatagcttctgcttttaaagtt
ataaatgttttcccactcccagtttaaaaagacacattcagtttttcttctagtatttgtgttttcatttttcatatttagatctcttacccatttgcca
tttattctggtatatgagaagaatgaagctgatgttatatttttccatataggtacacggttgcagttgtctcaataccgtttatttAAAAGTTTGGCTC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATTATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAGTTTGGCTCttccccactgcttcgagatgcatcctttcattgatctgtctattcatatatcaacactatactcttttaattacagaaactt
tataacattttaacgtcgtggagggctagcctccctatgtatctctttcttaaagaattattacttgtttattcttttttttttttttttttttttttgg
acacagggtcttgctttgtcacccaggctggagtacagcggcatgatcttgactcaccgcaaccactgcctcccaggttcaaacggtcctcccacttcag
cctcccaaggagctgggactacaggcatgtgccatcctgcccagctaatttttgtatttttgtagagatggggtctcactgtgttgctcaggctagtgtt
tattc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 402 84 NA intergenic
1236 chr2 85430776 85431100 RIP_Alu_chr2_085_02 0 - pAlu2-85476742 NA NA SINE Alu Ya4 ctgtggttccagctacttgggaggctgaggtgggaggatcacttgagcccaggaggtggaggttgaagtgagccaagattgtgccactgcactccagcct
gggtgacagagcaagaccctgtcttaaaaaacaaaaagagagaaatagctaacttaagacataaagtctacaaaaatattttttgagaaatacagaaaag
tataaagaatgataccacacccaaaacctgccatgtgggattgtttttatagcttttaaattttgttctttttttcttaaataaaacatcacagaaagtt
aaatcctcttaaacactccaccagtcttatgctcctccccacttcccaaaggcagctaccattgaaatgttcccattctcccttaaaAATACATATGACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATACATATGACCagtaaactcagcactttgggaggctgagacagaaggatcacttgagcctgggaggtcaagacc
agcttgggccatatagtggaaccccatctctacaacaaataataaaaatagctggatgtggtggtgcacacctgtagtcctagctacttgggaggctgag
gagggaggaatgcttgagtttaggctgcagtgagctatgatcatgccactgcactacagcctaggtgacagagtgagatcctgtctctcaacaaagcaca
aaaaaccaaaatccgggaggctgagacaggagaatctcttgaacccaggaggtggaggttgcagtgagctgagatcatgtgccattgcactcctgcttgg
gtgacaagagtgaaactccgtcct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1250 chr2 87238319 87238640 RIP_Alu_chr2_087_01 0 + Ya5ACA855 CCATGAGTGTGGGTTCTGTCT AACCTCTATGCACTGAAAGAAAA SINE Alu Ya5 tataacatgaattaatatttgcctcaatttacagcaaaatgaagaccttctaaaattgtaactccatttatttttcccttccaacttccatgctattttt
ataatacattttagtatatgctatgactcccaaaaacattgttattgctattattatgctacattgtaaatattcatttaaatttacccactggaataca
actttgtgtttcttattacttcctgaatctataaactaccacttaataccatttcatttttgtttcaaaggtaaccatgagtgtgggttctgtcttagtg
aattacttcagttttcagtgatctaaaaaggtttttgtattatcttcacttgtgaagttttaactgtatatgggattgaagattAGAAATTATTTTCTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGAAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAATTATTTTCTTTcagtgcatagaggttataattctattgtcttttcacttacattgtttcatttagcaagttaag
agtctaaaggtgttcttttaaaggaaacgtgtttttcccctgactgtccatgatatttttctcttttactctatgtttctgcaattcctctctgtgtcat
caggttttgaattgctttctgtgtttttctgctttggattcatgtttccctttcaattaatagtttaattcatttagaagcatatcttccttgttcttgc
tctactttcttgagcccgtaattatatgtaagacttttcattaacctttgcactctacaatattttctatccttttctttactatgtttgattctacata
ttttattctaacatacctgct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 478 141 NA intron
1250 chr2 87251373 87251685 RIP_Alu_chr2_087_02 0 + pAlu2-87297329 NA NA SINE Alu Yb7 gcattaaaacctgaaatataagaaaccagatttatcaaaatatgtgcaagatatttacattaaaaactacacaatattgctcatagatattaaagaagac
caaagtaaatagagaccatgctccttggttgaaacagaatattcttaatattccaattctccccaaaatgatctatagagctaaggcaatcccaatcaaa
atctaagctggctttaaaatagaaactgaaaagccattaagaagttcttgtgagtgtggctggttggtctagggctatgattctcacttagggtgcaaaa
ggtcctgggttcaaatcccagaggagcccaacttttagttcaaaagttcttgtgaaaacaaaaataatctagccaaaaatattcttgaaagaggAAGAAA
TTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACA
AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAGAAAgaggaagaaatttgaagatatacacagtctgcagccagacacaaaaaaattacatattggatttttcctttttatgaaatgt
ccagaaaagagaaatatataaagaatacataggcctgtgatttcctggtctgggagtagaaaggatactgactgtaaataggcattaaggtatttgttta
aagtgaagaaagtactctaaaactggattgtagttatcattgtgtaacaaatatttgtgaaaacaattgagctgtttgcttataaaaggtgaattttata
gtatttacattatacatttataaaactttttaaagtatttttaataaagctgtgtcattaaaaagaccaataatctgccattcctaacatgtttagtaaa
aaaacatgaaac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1269 chr2 89699326 89699631 RIP_Alu_chr2_089_01 0 + Yc1RG125 TGTTCTCTTCCTGTCTCCATTTC CTGTTTCTATGATCTTGAAGGATGG SINE Alu Yc1 cccaagactgaaaaactgaagtgcaaagaagaaatgtagcaaaaacctgggtccttttgctgtcaccaagttgctgcaccaacctcaaatgttccaaact
tcagaattcttatctctgcttcagctattgctatcatttcttgcaattgcttctaaaattattttaacttatccagaaaaaatattcaagggaaagagac
tgactgggttcttatttgtgtttatgggagtctaagacacaaaaaaacaggaaatcagaaaaagtgatgtcttctcctaacatctttgtcattctatgcc
catggttagagaaatccaaaccactttgaagaatgtataaattctgctctcttcctgtctccatttctctttttatatcttaagcatAAAACAGCTCCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAACAGCTCCTTgttcttcttaatgtctccatccttcaagatcatagaaacagaatcatggttaagaaactggaaaaaacagttggagaaaaca
tgaaatctagggattgtatgcatttcctctacactaatgtggtgtttgcagggttcccctgcttctcagttgtttttgctgaagatgccgactgttccag
ccagattcctgtcagaggttgtgtttggagggtttaaaagaaaagcttccaggggcttagggctgaattccaaaaaggatagccggagagtggctctgga
ttcccagcaaggagaatgccagattgagtcttgggaaagactatggacatactggatcccaggcagagacttgtagcagggagaaagcctccacagaaaa
tccct UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 60 415 97 NA intergenic
1280 chr2 91111416 91111724 RIP_Alu_chr2_091_01 0 - pAlu2-91157380 NA NA SINE Alu Yd2 cactaggtcaggagtttgagaacagtctgaccaagtggtaaaaccctgtctctactaaaaatacaaaaattagctgggcatagtggtgcgcacctgtaat
cccagctactcaggaggctgaggtaggagaattacttcgaccccgggaggctgaagttgcagtgagccgaaatcgcaccactgtactacagcctgggcga
cagagtgagaatccgtctcaaaagaaaaaaaaaagggtggtggggctttaataaattaagtggtacattttaaatattttaattgtttattagatattac
gtatgcagataaacctgtttaaatatagaagatttatattcctatttacatatatccttttgacaaattagaattgaaaataatataaaAATAAATTTTC
AGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGGGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCACGGTAAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCTGGGTGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAAGAGAATGGCGTGAACCCGGGAAG
CGGAGCTTGCAGTGAGTTGAGATGGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAATAAATATATAAAATAAAAAATTA
AATAAAAAAATAAATTTTCtttctgtcatgcagacttaaatagtaaaatatcttccttctattatttttatcttttttgtttatgatggttaggaagtga
atatctaattttctatactgtgaaaaatacacataaagtatcatggaagttcaacattcattttccttgaaaataattccaaagttttcttctccagaaa
tatatcctgttatcattaagtttagttgtactgataaatggcagttgatgatttgtaagtttttaaacatatttattcataacacttatttttttttctt
tttgagacggagtctcactctgttgcccaggctggagtgcagtggtgtggtctcggctcactgcaacctccacctcctgggttcaagcagttctctgctt
cagcctct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1315 chr2 95781597 95781908 RIP_Alu_chr2_095_01 0 - Ya5NBC324 TGTCTCAAGGGTCATCCTCA TCCCCATCCCTAACTCTTTCTT SINE Alu Ya5 gagtaaatgggttacctttccctggagccttctcaagccactatggcaggagatttccactcaaacccttcatattagaaggttcctgagacacccacat
ttcagttctgtggaaagtaccagggtcaaactactggaagacctaggaccccggtcacacaccccacctaccttacacttcctgcactgtcctgggccat
ctctccctcctgaggatctccacagatggctcaattccatagggtcttgttgatcttacatcaaccagtgtagaaacttctgtctctctctctccccatc
cctaactctttctttcacattttctcattcatactcaccttcctttaaaataattccatgggtcttttttcaaagttaaagagacttttAAGAATCTTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAGAATCTTAGtttgagtctgtgacaaaataggggaaatatcatccctgaggatgacccttgagacagttataaatgactataataaaa
taaaaaatttggaataagaagggattcccaactgctactctcctagctaggagtcgaaacaggcccttcacaaagggagcgacagggaggacggcagtga
ggggcagtgaggaaagtggggagttgaataagccttgccagattgggaaatgagacccacagggaaacacgactccaatccctcctcagccataaagcct
tgttcccacaacctccccagcagcacttcccacacacatgtgtaaacaacagaaagggctccagggagccaggctctgagcaggagtgggagagagagat
cagtctgaact UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 486 164 NA intergenic
1341 chr2 99211498 99211818 RIP_Alu_chr2_099_01 0 + Ya5ACA862|1175|pAlu2-99357450 TCAGAGTAATGCACACAGATGCT TGCATTAAGTGCTCCAGAAGG SINE Alu Ya5 tatattatttactattattactaattcctctcactgagtcaacttatttaattggctatcaagtcctactgctcttttcactaaaaattatctcagttac
atttcttccatccctactatcactgttttagttcatgctttcagactgtagcagtcacatgtattcactttatatgtaaacttataaatagctagaataa
gaatgaaccagaaatatgtttctggggataaaaagatgtaaaacaaatagaatcttacaatttcaaccctaaatgaatctaggaaagtccagaacaaata
aatcagaaattacaccacagcatgattactgctacatcagagtaatgcacacagatgctaaggtaacactgagaaagaagctacAAAAAAAGTATTTCTG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGTATTTCTGacttctacttcttcaaaaaagacttaggatctactcttcattccaaaagaactatgaacatatc
ccttctggagcacttaatgcattatattacttttatgggatgtccacagccatggctactttaacgtgtctaaaacagacttcctttttttttttttttt
tgagacagtcgtgctctgtcacccaggctggagtgcagtggtatgatctcggctcactggaacctccacctcccaggttcaagcaattccctgcctcagc
ctcccaagtagctgggattacaggcacctgccaccatgcccagctaactttgtatttttagtagagatggggtttcaccatcttggccaggctggtgtta
aactcctgacctcatgatcc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison|Candidate screening NA 55 485 149 NA intron
1358 chr2 101433732 101434054 RIP_Alu_chr2_101_01 0 + pAlu2-101579686 NA NA SINE Alu Ya5 caatcagtccccaaggtttatggattctttatcccaatatctgattataaacttttaaatatcatgctgggacattttctcaaaagcttgccttgggggt
aaaaaaatactaccacatgggaaaaaaaagagcctgttgcatagaattgtttatgatggcaaaaattggaagtaaccaaaaagcttagcagtggggaaat
acaaataaattaagttttatcaatactataacatacagcctttaaaatagatgagatagagctataggtgtccatgacaaagatataagtaaaactgtta
caagcagtgaatctgtatggatctgtagcaacctcaattcctgcctcctcagaagaaagaattcagctgaggggggcataaggcagagtGAGAACTGAGG
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAGAGAACTGAGGcaagttttagagcaggagtgagagtttattaaaaagttttagggcaggaatgaaaggaagtaaagta
cacttggaagagggggccaagcgggcaacttgagagatcaagtgcatgctttgacctttgacctagggttttatatgttggcacacttctggggccttgc
atcccttctctctgattcttcccttggggtgggctgtctgcatgtgcagtggcctgccagctcttggaggtgagcatgcacagtgcatttatgggacttg
tacacatgctcacttgagatgttcttcctttaccagtcaagtcttcgtataaggtcacataccagttaaactccgccagttttcgtcttggtgcacacat
gtgagcccacttacccggctcc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1359 chr2 101556371 101556683 RIP_Alu_chr2_101_02 0 - pAlu2-101702325 NA NA SINE Alu Yc1 cacgcccagctaattttttgtgtttttagtagagaaggggcttcactatgttggccaggctagtctcgagctcctgacctcaggcggtccacccgcctca
gcctcccaaagtgctgggattacaggcgtgaaccaccatgcccagctcagcttgctttcttttagttctcacagctacactctgcaggaggcactttaca
atccaggaaacggcccctcagaggtcccccaggcagaacggttaaatccgtggccctatgtgctctgtcactcattggctacacaaccttgtgcaaactc
acttcaagtgtcttcaattccctgcaagtctccttttcctccctgtgaaatgagtccactctactggattcacgaactcacgcatAAGATCTTAAGCAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGATCTTAAGCAGGtactgattggttcttctgcatatgctgggtactagggctggaggggtctaagttttggtctgatcttagactt
agcccactgtcacggactcagtcaggcctctgagatcatgcctagtctcctcaggtaaacatgacttatctctcagtttattttcttctctggctttctc
caagatggccccagggtctatggggaagaggggtggctcacctggtgggaggatgctgtaactcatggctcaagccagagcattcttcacagtgggaaag
agagctagcagcagcagctaaaagtggcaggcaggccccacccatacgggtccctcctcatcgcaggaccatggactctaaggcagtgcccttgtcctct
gggtgctagtca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA promoter
1369 chr2 102781014 102781336 RIP_Alu_chr2_102_01 0 + 2565 NA NA SINE Alu Yb8 atttccctttgtagagatctccattccattctggaagggatttaattatttcaagttataatagttatagcccctcacaaagtaattttggaatcagaaa
ttaaaattctgatttttaacatgaagttttgctatacaatttttaatctttaatatacaataagtgccatttgtatagtttaagtaagattttatatttc
ttttacaggcttccacttcaacctcccgatatttatccttacctaaaaatacgaagcttccagaaaagctacaaaagaggaggactatttctattgcagg
tagtgaatatagttggagcagaaaaattttaaatttatttgccaatgtttataaactagacaaattttcctattatttttcttcattAAGAATGAGTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAAAAAAAAAAAAAGAATGAGTTCCaatgagaacacttggacacaggaaggggaacatcacacgccagggcctgttgtggggtcggggga
gtggggagggatagcattaggagatatacctaatgtaaatggcgagttcatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgc
acattgtgcacatgtaccctaaaacttaaagtataataataatttaaaaaaaagaatgagttcaagagtttgcaaatctaaaataataactgggtgaatt
ttaattcgcattgcaaccttttggaatggcattctgtgcagattctaaagaatccaatcagttattttccagcaaatattgtcatcatggggcccaaggg
caggtaaacaaaaagttgtaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1404 chr2 107384914 107385240 RIP_Alu_chr2_107_01 0 + 52792|Ya5ACA814 TCTCGGGAAATTAGCAATGG TCAAGAGGCTTTGAGGAAAAA SINE Alu Ya5 acaaaatatcatgtcatcagcaaagagggacaatctgagttcctctttctcaatttggatgccttttattttttctcttacctgatttccctagctagaa
cttccagtaccatttgaataggggtgatgaaactgagcatccttgtcttattccaattatgaaagaaaagactttcagactttcagctttttcccatgaa
tatgatattagcagttgatttgtcatatatagcctttattttgttgaggacattgactaactcagttgaacaagattatgttagaaagaagaaacaaact
ggaatgggttgttataatacttaggtggtaagataatgagttcagtttgagtccttggcaaatctcgggaaattagcaatggcttAAGAAAGAGGGTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAGGGTCTTaaaagcaattttgagtcctctgttttttcctcaaagcctcttgagtagtttgaaatgtg
caagaaaattatggcttgccgggcgtggtggttcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcgcaaggtcaggagatcgagact
atcctggctaacactgtgaaaccccttctctactaaaaatacaaaaaattagctgggcatggtggcgggcgcctgtagtcccagctactcgggaggctga
ggcaggagaacggcgtgaacccgggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggctacagagcaagattctgcctcaaa
aaaaaaaaaaaaaaaaaaaaaaaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 423 82 NA intergenic
1449 chr2 113332291 113332598 RIP_Alu_chr2_113_02 0 + pAlu2-113522775 NA NA SINE Alu Yg6 ttcaatgctatccccatcaagctaccattgactttcttcacagaattagaaaaaactaatagccaagacaatcctaagcaaaaagaacaaagctggaggc
attgtgctacctgacttcaaactatactacaaggctgcagtaaccaaaacagcatggtactggtaccaaaacagatatatagaccaaaagaacagaacag
aggcctcagatataacaccacacatctacaaccatctgatctttgacaaacctaacaaaaataagcaatggggaaaataattccctatttaataaatgat
gttgggaaaactggttagccatatgctgaaaactgaaactggaccccttccttacaacttatacaaaaatcaactcaagatggattaaaGATTTAAACAT
GGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGTGGATCATGAGGTCAGGAGATGGAGACCATCCTGACTAACACAG
TGAAACCCTGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGATG
TGAAACCAGGAGGTGGAGCTTGCAGGGAGTGGAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCCATCTCAAAAAAAAAAAAAAAAAA
AAAGAAGGATTTAAACATaagacctaaaaccataaaaaccatagaagaaaacctaggcaataccattcaggacataggcatgagcaaagacttcatgatt
agaacaccaaaagcaattgcaacaaaagccaattgacaaatgggatctaattaaactgaagagcttctgcacagcaaaagaaactattgtcagagtgaac
aggcaacctacagaataggagaaaattttttcaatctatccatctgacaaagggctaatatccagaatctacaaggaatttaaacaaatttgcaagaaaa
aaaaacccatcaaaaagtgggcaaaagatatgaacagacacatctcagaagaagacatttatgtggccaacaaacatgaaaaaaagctcatcatcactgg
tcattag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1454 chr2 113913682 113913990 RIP_Alu_chr2_113_01 0 - Ya5ACA864 GCTGAGCCTTGGTGAAAAAG TCACTGAATTCCCCTCCATT SINE Alu Ya5 atatcttttaggtcatattcctttcaaagctttttaagagatgaaggcttatatttagagtactttaggaagctcaacatcacaaaaatatgaagtatag
aatgggagagacttagggcaatgaggaaaatcttaaaaccagtccaagcctgagacagaggccctgaacatgagtgtttcacagggcagtgatgtgaaaa
ctgaaaggaaagggtgaatgtaagaaatcttctaagagaagatttactagggctttttaaccatattatgaaaaaaaaaacactttaagacatagctcat
tcattcgaaggtttctaatacgttacagatttatgctgagccttggtgaaaaagtgaacaagatagtctctgccttcatagagcttagaaatATTAAGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGCAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATTAAGGGaaggggggaatggaggggaattcagtgaataaggaggcaattatgtcacagggtgacatattcaataggagatgcacaaaatgc
tatggagaacctaagagggacatctagccagaggagtcacagtaaaaaagtacctattccaaggggctaaaacacttggcacctttgaagtaacattagt
tcattgtgcggggccaatttggcaggctggaaaggttggcaagatccagatgctacaggtccttgtaattcatgttaaggaatttggattttaacccata
gggatgccactgaaaggtgtgacgcagtcggattgacatttataaagatcattaaggctaacatgcaacgaataaattaaagggcagcaagactccagat
tagtcagg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 410 94 NA intron
1455 chr2 114078897 114079200 RIP_Alu_chr2_114_01 0 - Yb8NBC126 AAAATGTCCCCTTTGTCCTTC CCTACGCAGAAACACCCTAGA SINE Alu Yb8 aggcacatagcttttcctctatagtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaa
gttttcatctacatgcatatcatttcttatggtttccaattaatcattccctcactatttttgggaaagacacaggatagtgggctctgttagagtagat
agctagctagacatgaacaggagggggagctcctggaaaagggaaagtctgtgaaggctcacctggagggaccaccaaaaatgcacatattagtagcatc
tctagtgctggagtggatgggcacttgtcaattgtggttaggagggagaagaggtacctacgcagaaacaccctagaacttctcttAAGATGCCCCAATC
GGATGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTGTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAGAAGCCCCAATCatcattcattctgcaataaaaatgtcagaatattgctagctacatgctgataagaaggacaaaggggacattcttaagagaaa
cctggcaccataagtacagattaaggcagagaaagacattcaaaagaggcagctgcagtagatacaaacgtgaccgctgtcagcctgcctggtatggtgg
gaaggaggctggtgccagagtggattcggattgatcaccacacatgtacctcaatcaagtgaggaggtcccacaaggctaagtggggcaagtcggggacc
taaggcagtagcaggaaaaccaaagaaaacaggcggagacttgagacagaggtaggaatgtgaagaagtccaaaataaaaatccctgcacaggactctta
ggc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 438 118 NA intergenic
1465 chr2 115388656 115388958 RIP_Alu_chr2_115_01 0 + Ya5ACA815 TGACACCCATAGGCTCCAA GCAACCTCTGCTCTTTTTGTTT SINE Alu Ya5 gccaaactaagcttcataagcaaaggagaaataaaattctttttgaataagcacatgcttacggaatttattaccaccacctgcccttacaagaagccct
taagggagtgctatacatggaaatgaaagaccattacttgtcaccacaaaaagaagtatacagcccactagactataaagctactgtacaataaagtcta
cacaacaaccagctagcaacagaaagacaggatcaaatcctcacatatcaacattaaccttaaacccaaatgggctaactgctccacttaaagggcaaag
agtggcaaacaggataataaaacaagacccaactgtatgctatcttcaagagacccatctcccatgcaatgacacccataggctccaaatAAAGAAATGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTGCACGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACCCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAATAAAAAAT
AAAAAGAAATGGagaaatatctatcaagaaaatggaaaacaaaaagagcagaggttgctattcttatttcagacaaaacagactttaagccaaaaatgat
caaaaaagacaaagaagagcattacataatgataaagggtttaatttgacaagaagttttaactattctaaatatttgggtacccagctctggagtactc
agatttataaaacaagttcttgaagacttagttaactacactgtaacagtaggagacttcaacactccactgacagtgttagatatcatcaggcataaaa
tgaataaagacatttaagacctcaatgcaacacttcacaacatggaactaacagacatctacagaacaatccatccaacagtaacataatatacattctc
at UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 389 78 NA intergenic
1476 chr2 116903356 116903357 RIP_Alu_chr2_116_01 0 + 16722 NA NA SINE Alu Yb8 gtagaaaaggtataaagtcattaatatcagataaataaggacagaaaaactataacccaaatatgacaagtgaagagtggaaatccacaaagcatgagag
agagtactaagtcagctatcatagtaattaattaaagacaaaaatcctaaccagctggtcaaatgagtccaactactttctgtccacaatccctaatacc
caatggcaatctaaaaaccaaaagctgtaccataaatgatgtgaactacttgcttggggtcaggtttagttcacacacagattaatgagaaagaaggaga
gagcttcaggaaggtctagacaggataagaaatggagtggggaggtgggagagaagccatttcattcatggatgaaatttacttatgtAAAGAAATTATT
CCTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAAATAAAAATAAAAATAAAAATAAAAAAAG
AAATTATTcttattttagctgctagagggtgtcctaagctttgatgcgagcctcatactaatagaccttgagtgaacttaacaaaaccattcttcatttt
ttacacatagcatttgattatcccttctacttaaacaaactcatatcagcaatctaaaccaatcactaagaatcataggctatttgaaggaaacaaatat
tgttaaagaaaaaaaaattaagaaatcagccaaggtgccaagaaaagatgctaaaaggcaatccagggaataaaggagattttaataaaatatatttgct
agttatgagaaatttgagagattattgaaaccagaaaacaactataaggattaagaaaatgaaacaatcagaaagaattatggacaaattgataaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1482 chr2 117609293 117609619 RIP_Alu_chr2_117_01 0 + pAlu2-117799777 NA NA SINE Alu Yb7 tacagaagcgtgtacaccatttcaaggttacagaaataatgcgggttggattctgctaacacaggttatgggattgggaaaaagagaaattctattgagg
ggcaataaatgattgctggggagaatgattggatcttggaacagagattaacctgttagtagtttctttggaatttaaatgctccttggagatgtctatg
aaaagagttgaactctaaaatatgtgaagagatttattctgagccaaatatgagtgaccatggcctgtgatacagccctcaggaagtcctgagaacatgt
gcccaaggtggtcagggcacaggttagttttatacattttagagaccatgagacatcaatcaaatacattaaagaaatacattgattAAGAAATACATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAATAAAATAAAAAAAAAAAAAAAAAAAGAAATACATCCatcaaatacatttaagaaacacattgatttagaaaagcagaacaactcaaactggaggggc
tttcaggctacaggtgaatttaagtattttctggttgacaattggttgattttgtctaaagacctgatatcaatagaacgggaatgttcaggttaaggta
aagattgtagagaccacagttcttttgaagtcttatagtggctgcccttacagaagataggtgacaaatgtttcctattcagatcttacctgtttaggat
tgggagggtctggaagaaaaagatctagttatgttagtggacatcctttacagatgtaaattttccccccacaaagaacagctttgcagggccatttcaa
aatatggcaaataaacatattttggg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1490 chr2 118622374 118622511 RIP_Alu_chr2_118_01 0 + 17954 NA NA SINE Alu Ya5/8 attcaacccagtacacttacaggtctctggaatatggatctattactttttgtagggactcatatctctgctccctaactcaggttttacaagaataaag
ttttacagaagtacatcccccagtctgaaatctggaggagttcagaatttgagtaactgggtctgtccctggtattgctataattaggttacctttattc
ctttatgaatcattaactttgaaaactgctggttctatctgtgacaaccagtgatacatcatctttaaccagtctgtaccaccataaaaaaaaatgttgc
ttaagtcctaatttattgctccacgacacaaatggtgcatctcttacaaactcagccaattttaagggtgatttctgggctgcttAAAAAGGCTTCTACT
TGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC
TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTTCTACTgccagcttttggaaaatcttgctttagagattattattttctgtttca
ggacaaatccacgaatttggcctattcatgttagctatagtgagatgatgcctctcttgtccataaaacttgaatacccgggtgtcataagtgatttttc
tgaagttaatttttcccatactttgagttatcagtttctgacgtgctggtgtgcatttcagttgaggttttattacattgtgttggcagcacattatgtt
ttttacacatggatttgattgagaaatgaaactggaataagaatgaggtagcagcagcatctgctggaagactcaactattgctgttgtcaatcagcctg
attgattaaatatggtgatacacatctttattaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1514 chr2 121773078 121774299 RIP_Alu_chr2_121_01 0 - Yb8AC914a GATAAATTCCTCTCTGCCCCTAC CGGGTTTTCTGTAAGACAGACATT SINE Alu Yb8 tgggaacaatcctacccagatttcaccactaggttcaacagaatgtaatgagccagtgctgtatccagtgttaaacaggcatggcatgttgcaacaaatg
ctacacaggaccacctaatctgcaaaaaaacttataaccatattttaaagcttcaggaggcaaaactattccaattcaaaacactaagaaacagtcccat
catgaaaaccaaaatcaacttctgagggtaccaaaaggggtacaggacaaatgtgaggaaaatcagcatttgtggagttacaaatacgggttttctgtaa
gacagacattaaagaattcagtgacaaagcttgaaaatacaaaataaaacaaaagtcagtggtcatataattcaaaatttacttcagaaaaggcaaGGCA
GGCCAGGCGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAGAAAAAAAAAAAGATTTTAAGTGGGCAactctaactagtaggggcagagaggaatttatccccaccagaattgctagaagggctaaaaaag
caggtccaggcaaagcttccagaaacaacgcactgcttaattgctgtgatgaaccccagaaacactgtctctgctgcctcctataccagcaacagaccac
ctccacccatcctgcttcctcatgttgcttccaaatcaaaacctcctatgggtgcatcttattgacggaagttgggtcactgcctgcaagggaggctggg
aaatgtagcttaccaaattttgaccttaagaaaaagacaggattcacagttttggggagccagcgtatttcactgattctaaaacacacattttccccac
attttcatgtctctgaaatcaggatgcttctg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 58 483 336 NA intergenic
1566 chr2 128587502 128587799 RIP_Alu_chr2_128_01 0 + pAlu2-128776108 NA NA SINE Alu Yf1 tgcctagcatgactttagaacataagctaataatctccctctttataaaaaaatctagttatttgaatcccttttttgacaaatccagtagtttcattga
gtctattatttgcacatatgatgtgctttgcttggctttctgaagaaatataaaacatgctaaaaaagtagctcgataaagtttacattttatttcaaaa
tgaaccatgtaaataatcttttctgattttaatatggtcatcatactatggaactgattgttgaattcagtttcctttccaaccttttttcttctgtttt
ctctttgccacctttttatttggtggaagggggaggattttctaaacaggcgattcataggtagacttgatgtaatattaagcttttAAGACTCTGTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
ACTCTGTGTAatatttagtcatttaaaatatttatatgtaaaggttgttagccctttaaagtttctatgtcataataagctcagtactaagttcatgcaa
aaaaaataaaattttatttattgatttatttatttttgagacagagtctcgctctgtcgcccaggctggagcacagtggcgcgatttcagctcactgcaa
cctccgcctcctgagttcaagtgactctcctgcctcagcctcccgagtagctgggattacaggcactcaccatcatgccggctaattttttgtattttta
gtagagagggggtttcaccatgttggccaggctggtctcaaattcctgacctcaggtgatctgaccgcctcagcctcccaaagtgctgggattacag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1609 chr2 134294011 134294303 RIP_Alu_chr2_134_01 0 - pAlu2-134482500|Ya5ACA891 GCCAGACTCCCTCTCTGATG ATGGTTCCATCTTGTTTGGC SINE Alu Ya5 attctctgagcagacctgggctggtgcataaaccatggctctctcctcctcaccattttagttactgctaacttagaacacaccacctgtctctcacctt
cactgctgctgccacttctctgtttccattccagccccaaccattcactgtccacacaacaattaaaaagggatcattttccagtatgaatggaatcaca
tcccttccctgatcaaaagcctcccagggcttcccattacttttaagaacaaaatccatatgagttatttaaggcctgcctgacttggccccatacgcct
cttctccttctgtttccacgttctgccagactccctctctgatgcacacaggccccctcccaccttcctcctccagagatagcttAGAAAAAGAGACGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAGAAAAAG
AGACGAGtgaggagaacgttaagcaaggtgagaactatccttcataccatgaaaataagcttatggtaagccaaacaagatggaaccatggatttaaagc
tttgtggatcatgatctgcagtaagcaaatgcagtttacacacacatacacacacacagccaaaaagagtcatttcattaaacaatgtaatatggtctta
tgtggtatatactctgatattttcttatataagtaatatagtaatatattacttatatataaaatatgttatacatgaaatatatataaatataaaaaat
atataacatattttatataacgtatataatatatataagtaatatatatattacttatacagtaatataaaaatactgacttttccatgcta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 465 158 NA intergenic
1610 chr2 134378023 134378338 RIP_Alu_chr2_134_02 0 + 7365 NA NA SINE Alu Ya5 gatagtgtccttgtggggcaaggatcaccattccaatcaataagtatcaaccttggctacattttgaaatcagatgaggagcgaggggagacatactgcc
attccacctccaagaaattctgatataacaggtttaggctgaggcctggacaggaaaactttaaggactgcccaatgcttctcaaatccagccacaatta
aactctgctgatctcaatagtactgaccgtataacaggggttctgaaaatgcatgtagcctcattacatgctgctgatttgagcctttggctccattttg
acattgtgtgacacataataggtactcagtctatatgtgttaactggcatcctagcaaatgtttgattaatgaataaattaatAAATAATTGATGATTTA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATAATTGATGATTTAactaaagtatagaggagtttagaggtggcagaggtcagcatggattggtttagataggcagacataag
ctgagcctgaggtcaacttctccttgttatagaatgttctggaattctggaacatctaggctggaatgggccatagggagcgtccagttcaatggttcat
aatattttcctgctcacagaccctttagaatttgatgaaagttttgaacactcatcccctcccctccaaccaaaaagaaaaccatagttatgtattcaat
ttgagcaggttcagaaggctcctggacaatggtttcccaagctaaattcctaaggtccagctcaacatgtcccttgataggaaatgcaactgatgcccag
agacagtgagtgatt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1669 chr2 142184735 142185055 RIP_Alu_chr2_142_01 0 + 10306 NA NA SINE Alu Yb8 tctgccaaaatttgggaaataagaaaatttggctattgtacaaacaaaactctagagaagagacaacataacaggactagataatgatatttctgcaaat
ggataattagggatttcagagggtgaagaatatttacattccagggaaggcatgaaacctttaagggcttttacaaaaacaaacaaagcatagaaaaaac
ctggacccatgaaagataaacagcttcagtgtatttctaccaggaaaacatttcatttcattactcaaaagtaccccctcgacatatatatgtatgaatg
aatgatactactttgttgttgttagcaagaaatgtgtttattcttctagtttttatatctgtcacaagtgaggtatactgaatactttttttcttAAGAA
GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAacatttctgattttcttaaatgtggaaatagaagaaaacagtcacttggtgagagcagcaggaggcagctaaatg
tctaggcagatagggacgtgtccctagtgaaaccctacctccaaagcctgtcatcagctgtcattagcttgaaagccaagctaaaagttacgtccttgga
ccagattgagaactcatcttcctgcttggcatgctttcccctgattgatccccacccttcaccttttttatatttatataccctttcctaattggtcttc
tactctgtcatgcccacctttgagtggtgtctttgctttgaccctttttgcctactcacaagccaatcagcatgcactctgagtccataagaggccccag
acctagccagatgggggact UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1691 chr2 144991321 144991322 RIP_Alu_chr2_144_01 0 - ZFHX1B NA NA SINE Alu Ya5 aattctaatctaagtacctagaatgtagaggtaccccattgtgttccttttgtttggtttcacagattcttctcttggtagacaattgcaattgttatct
aatcaaggaaatgtaacggtaattttaattatcattttaggtgaaaaaccttacgagtgcccaaactgcaagaaacgtttctcccattctggttcctaca
gttcgcacatcagcagcaagaaatgtattggtttaatctctgtaaatggccgaatgagaaacaatatcaagacgggttcttcccctaattctgtttcttc
ttctcctactaattcagccattacccagttaagaaacaagttggagaatggaaaaccacttagtatgtctgaacagacaggcttacttAAAATTAAAACA
NNNNNNNNNNAAAATTAAAACAgaaccactagacttcaatgactataaagttcttatggctacacacgggtttagtggcactagtccctttatgaatggt
gggcttggagccaccagccctttaggagttcatccatctgctcagagtccaatgcagcacttaggtgtagggatggaagcccctttacttgggtttccca
ccatgaatagtaatttaagtgaggtacaaaaggttctacagattgtggacaatactgtttccaggcaaaaaatggactgcaaggctgaagaaatttcaaa
gttgaaaggttatcacatgaaggatccatgctctcaacctgaggaacaaggagttacttctcctaatattccgcctgtcggtcttccggtagtgagtcat
aatggtgcca Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.PMID: 15983781Ishihara N, Yamada K, Yamada Y, Miura K, Kato J, Kuwabara N, Hara Y, Kobayashi Y, Hoshino K, Nomura Y, Mimaki M, Ohya K, Matsushima M, Nitta H, Tanaka K, Segawa M, Ohki T, Ezoe T, Kumagai T, Onuma A, Kuroda T, Yoneda M, Yamanaka T, Saeki M, Segawa M, Saji T, Nagaya M, Wakamatsu N. Clinical and molecular analysis of Mowat-Wilson syndrome associated with ZFHX1B mutations and deletions at 2q22-q24.1.J Med Genet. 2004 May;41(5):387-93. No abstract available.PMID: 15121779.
Direct sequencing NA 0 0 0 Mowat-Wilson syndrome exon
1692 chr2 145180500 145180501 RIP_Alu_chr2_145_01 0 + 238613|pAlu2-145369095 NA NA SINE Alu Yb8 atttagcatgatatgtgcattgcttgtattgattgctcaagagttactcaattcagaaaattaaaaatatacaccctatagtatacagtatatactacat
agatgctgtgtatactaaagatactgggtatccgtagtatgtagtatatgtagtatacacagtatctatgtagtatacactatgtagtatatactacata
tacacagtgtctatgtacggtatacacacactacacacactacatagatgcatattgggcaatatggaattttaaaacaagaaacaaaaagatagtattt
ctactttgaggaaaaccaacatatttgtgtaaaagaaataaaactctttaaaattagctgttttagatttgacatttattcatcaAATAAATATTTACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAACAAAA
AAACAAAACAAATAAATATTTACAAagagatgaagaaggcaccatgatgccctccgagagctgttaatgtaatgggtttaagacaaccacaatagaatga
agaactttatttttcacaagacagccaaagaatgctgaaatgaaaatgacaaaaacatctaacgttgaagagtccttcttacgggccaggtgatatatgg
tctattttaggtgtgttgcctcccgtaatttgcacaatgacttcataaggcaggtactcttacttcctctgccttgtttcaacctggccttcccagatga
agcaaccaggagcgataagttgtagtaagttgctggagggcacacagctagcacatggcagtggcgggcatgtgaatgggggcagtatgaccgtacagct
gaagatgcca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1732 chr2 150452493 150452802 RIP_Alu_chr2_150_01 0 - Ya5ACA903 GGAGTGTGTTCTGAGTGAAAG TAATGCCACATTCATCTGTG SINE Alu Ya5 taaacttcgatctgggatcatatttctcctaccagaaatagaagctttaatatttcctttagttctttaatgtttcctttttatatggcattgataaatt
ctcttactcttgtttgactgaaatatatatatttcacccttatccataaaaacattttgtatatgcataaacgtctaagatgtcatgaattttttttcag
caatgtaaagatgctccattatattttggcttccataggttctggtaaggagtgtgttctgagtgaaagtcttttgacagtaatctcttttctttttcct
ggtttcttgaagttatattatgatgtacctagatgtagctttcttgccatttttactccttatatagtgtttctctgtttgaatcctcAAGAAGCAGACA
CTGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAGCAGACAttgtggcacagatgaatgtggcattactttatttgagaagtgcaaacccagggtagtataggtatggaaaacgggaaat
gagacaagaaaatatgcaaggaatgtcataaaatgtgttaccatgctgactattacatcaagctgccaagaaacgtggtagctgctcagtagctgagttt
actttccggcatacataacttcttaataaggggtgcaagaaggaaccacacctaggaatattccatggaagaaagaacagagctaactctccaaaactgg
gtaactgtgttaccttatcccttgatggccattcaggaaaccagacaatgcctgggaatataatctatccagcttgaaactaaggattcgtgtctgttat
taatttaga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 499 178 NA intron
1733 chr2 150584817 150585129 RIP_Alu_chr2_150_03 0 + Yc1RG148 GTTGGAAAGTGTGTCCTAAAGCA ACACGTTCTGAAACATCCATCTC SINE Alu Yc1 ctgttaagagactgatcaagtcttaggtgactctccaggccaaaaggaattttaagccaccatgtagtgctatctcccttactttgtagcctctgaatta
ggggcacatacagagcaaaagtcagattcctgattaataatccaggaccctttttaaaaaaattttatctcatcatgcttacactgtattctgatatatt
gtgtaccataaatataggaaagtacagggaaaactgaaataattatgtaaaaatattctagcttttgcagttgctaggtatactttaatttaggcaatag
acatgcttctaaaacacctaagcaagaaacacgttctgaaacatccatctctactatctaaagaatttcgctaagagaaccaatataaaacAAACAAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAAGCAaaaataaatatgaaactggatgctttaggacacactttccaactttattccaaggacaaatcgcacccattcaaacctc
cttttctctattcttctctcttcttctcccctttgtgaaaaatatctccttcagcacttgtgaaaactttaaaatttgtgctccaatttaaaatttgatc
attgtttgaaagtatttaattttttaaaggaaaatacttattggactaataacaatattagcagttgttctttactgtgaaacaattgagatagttgttc
ttgacacgtggctgaggctgtctatactgagagagtgggactttgattgcaagaaggggctgcttatgagcacattttatggctaatagacatgaaaaag
ggtctaggaaaa UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 58 436 115 NA intergenic
1733 chr2 150589760 150589761 RIP_Alu_chr2_150_02 0 + 13570 NA NA SINE Alu Yb8 attttaacaaaataagaaagattcttagcattttacaactcagaagtcctctgtacactggaattacagctgaatagtttgcagagatgagaaagctgac
actaatgcaataaattcagtagatttcaggaaaactacttggtgcacacagtattataatgattgaatttttcaaagttttgccttaactgtgtgatgaa
agaatttaataaagggaaggctgaaagtaacatggctttttaaaatgtagtttcaattgtattcatttctaggacattgattgctatgtatgtactgaaa
ggaaattcctcatgcctcatgagaaaataaattttgtgtgcaaccaatcttggccaacatttatttagaaatgtctgtagcttagagAAGAACTTACATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAACTTACATTatttttagatacaaataattaaagaattagcttaatttcaattatttttaatgcagccatgctttcctaa
tgagcagatttctttaaaaaaatcaagcaatttaggaaatcctacaggatagcaaatatttgctaatttaaatgtgaataacatctgtagttatttggaa
tataagggagataataaacagcgcttccaggaaaacccagagtacaactactattcaaacataaaactatttttttaactaagctgtatgccagttggtg
cagcagatttggaatgcaaagtttgcttgcatttagcttaaaaatttgtttttgagtcaattttaaaattgccattttaaaattaatatatactcaaata
agctttttcatactcat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1748 chr2 152442809 152443111 RIP_Alu_chr2_152_01 0 - pAlu2-152581221|17093 NA NA SINE Alu Ya5 tcttcacatggcattctcctctctgtctctactcctcctacaaggacaccagtcatattggattaagaacccgtgctgctctaggatgacctcattttaa
ctcactgtatctacggtgaccctatttccaaatgaggtcacattctgagaccctggagattaggacttcaacatatcttttagggggacacaaacccgta
acacccttaggtccagtttgtttcaaaggattttcaaagtttcacaggattcatctcctagcttattccacttcctctttgaagcctcctgacttactaa
aaaataatttttaaaaaatgctgtagcaagatttgtgggattatacatattgtgggatacttcaaatgttttaaccatctataacgcAAAAATAGAGTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATAGAGTGCaacacaactatgttattcacaagataattacagaatttactttgaaaatattaatttacagtgtactcttggaagtaggatccaa
gttttcaactccctaagaaaagacaatttattttaatcctgtgggtttatctcaggcagcaatcgtgtgcctcattagtcatgacttcagactcctacat
ttgaggcctgttgcgatagtgaggctgggccaagggaccggctccccacagataaccctgctcgcacttaggaagaagccatttttgaattgacatgtgc
cccattccttcccttctacctgctgagccaacacacgctgcctttcctctgacatcactctgttcatgtcctcatgctcctgactcagagcagtgcctgg
ct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1764 chr2 154578123 154578124 RIP_Alu_chr2_154_01 0 - pAlu2-154716616 NA NA SINE Alu Ya5 tatgtatatacaatttacatcttcatatatatttaatatttatatattcagattaaatgaaagatatatttattcataatttacatattgatatatacct
attaaatatataaaatacaggagaatgagaacaaatgtaaaaccaactttagagttttaaaataaatcacacaaacaacattatattatagtcagaaaat
taagcaatgtaaagttaaataataaaatggtaatcaaaaaataagtgaaagtagtcaggacttaaagaaaaaagacaaaaggttatcagtctttaaagat
tagcaatataagtggtttttccttatacaattagttttctaaatcgaaagtggcaagttttttttaatttaggaaaaaacatAAAAATATAAAATCATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
TAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATATAatatataaaatcatccttaattccagaaacaactatcctgttcttactcgcagactattatttaaataattatatcatacaaactatttta
tgattatattctctttttacttaattgtgaatttcttgtgtgacaatatctttttttatcattacactgcaagatcactgattaatatcctgttgctatg
gcatgccatcatttacttattttctgaatataaattatcatcaaatatttgtggcaaaaagaagttactgtgaaggtccttgtgcatatatcttctgcca
cagcgtgattgtttccttaggataaaatgcccagaactgggatttctgggtcaagtagcatgagactgttaaaacttgttaaaccatattt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1794 chr2 158544608 158544904 RIP_Alu_chr2_158_01 0 + pAlu2-158683025 NA NA SINE Alu Ya5 atatacgttaactacaaatatgaaagtgtactatgtttcatgtttatgtttatggaactgtactacagaactgtacataatttatatgaaaggaattata
ctatgttttgagtgtcctgcttttttcatgtaatattttgtgtactctctatagtcattcattcattgcaacaatttctgtgtgcctcctatgcataaga
cagcatactaggcacaggataaacatatacacatacacacacacacacacacacacacacacacacacacagagtacaaaacagacataccttgtattta
ctaatatatatataaggtagtatctgtaagatacggaaaataattaaggctcaaactagatggaatagccaacaaaagcctctttGAAAAGGTAACTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA
AGGTAACTACTtttaaaatgagatctgtctctgaaaattcatcaaaaatagtatttttagtgattacataaaattccattctatgaatatatataaacct
aaccgctgctgtagaacatttacttttttttttttttttttttttttttttttgagacagtctcactctgtcacccaggctggaatgcggtggtgcgatc
tcggctcactgcaacctccatctcccaggtactcctgcctcagcctcccaagtagctgggattacaggtgtgcaccaccatacttggctaatttttatat
ttttagtagtgatgaggtttcaccatgatggccaggttggtctcgaattcctgacctcaggtgatctggcctcctctgcctcccaaagggttggga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1810 chr2 160681370 160681681 RIP_Alu_chr2_160_01 0 - 12521|pAlu2-160819787 NA NA SINE Alu Ya5 gtaaatcccactaggaaggtagtttggctaccatggttcatacttttacttcatttgcaagctctatagatttgtttattttgtgccagctcagccatac
atttataaagatgttttcaaaatgttttatccagcatttcaactagtttgaccaaaagaatctttcagggtacctaatctgctggttatttctcatagca
ccatttattttaacacatgagattttaggatagagaagagataagcacatgtattcagtctactgctcaatctttgagatgtctctctctgtgtttttaa
aaattttttctttctataaccctattgcataattaaagccattcatttaatgaacttttacaaggcatttgtatgacaagggacatttAAAAATTACGTA
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAGAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATTACGTAatgtgcatgccttcatgttgctataatctgggagtggtgacagcaaatacaataaataactcatatatagattctta
gtcattcctgttactataacaaaatatcacatattgggtaatttataaataacagaaatttatttctcacagttctagaggctgggaagtccaagattaa
ggtgctagcagattcagtgtctgctgaaggccttcttgcagcgccctcacatggtggaaaggcaaaagagcaaaacaagactaggacactccctcagcct
cttttataaaagcaccaatcccattcatgaggatggagcactcatgactttattacttcccagaaggccctgcctcttaatactatcacatatgcgtttt
ggagggatata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1818 chr2 161621117 161621431 RIP_Alu_chr2_161_01 0 - pAlu2-161759537|8756|Ya5ACA914 AGCATTGCATTTTTGGAAGG TACATTCTTGTTGCTGGGCA SINE Alu Ya5 attcacccaacaattcgccaagggctacctgcattgtcattgcatactataagtcagactgaaagcagggaaggcaggtgaagctctgccttccccactc
atctcctggatgggtagagcaatgatgtgccacacctcatttcctgttatccccacttcagggcccccggcctatcacaactgcaaaccccaaacttctc
tctatagataatatactactagaaaaatgtctactgtccccttacaatctagtaaattaaaatatattccctgtccctttagcattgcatttttggaagg
cttctcacttcaaatttggaaaataacaaggaaatgtcaatagtctttaaaaagtctccaaaagtacttcttgtagcgtcagcctctcttAAGAATCTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAATCTTCtacttgttctctgcacttttagaggcatgcccagcaacaagaatgtaacgattgcattttaacacttcattcattt
tgctttctaaaagaagattaaatgaaggatattaagtcccctccacatgctaagaattctgaggagtaacttcaggatgaaaacatatatgatcctgctc
ttcttccctaggtatccagatgttgaacttggactgtgtaagtctcttccagatatagtttggatatctgtccccactaagtctcatgttgaaatgtagt
ccccaatgttggagtcacagcctaatgggaggtgtttggatcatgggggtggatccctcatgaatggtttgggccatccccttggtgatgagtgaggtgt
cactctgagttcac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 60 491 167 NA intergenic
1832 chr2 163491928 163492230 RIP_Alu_chr2_163_01 0 - 238625 NA NA SINE Alu Y aaggtaatgcggactgagagcagatctaaaggctaaagataggtgagaaatgcaaatataaacatacctttcctattaatattagctgacctctactcaa
accaaatgcagtataaaacatttctctttcctatttcatttggtttctattatgtgtgttgcatgtatcctatgatgtgatgccaaattcctgacggaat
ttctgctgacacccagtccttatcttcattcacttgttcacttttctctccacttcagaagtgtatccccagtgtaataaacttattttgtatgtgtaaa
gtataacttctattgttttcaatttatttgattgtaaaatgaatatcatattatagatgttatttgatcataaatgtatattatattaAAGAATAGGTGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCCAGACCATCCTGGCTAACATGGT
GAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGAATAGGTGAgaacatatgattacaaaagaattctgtaatctttaaatcgatagcaactaaaattataaaaacttttacaaatcaatgagttaatg
ttattctagtgtcagagtacttctgcttctatcagtaatacggaaaatttgaaaattatctcttgcttatatatttactacctttagaatatctagaaat
gtttacatgagatgaaaaagttatacttgtgttatccttgtcctaaaagaaaaatattttttaaaactttaattcttgcaagatccaatggtcttactct
ccccaaatatatttctagcaaaatgtatttctgatatttcaagtctgacatttattttttactaaaatgcacaatgatagttattacaggaatcaaaagt
ac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1832 chr2 163504134 163504135 RIP_Alu_chr2_163_02 0 + 52571 NA NA SINE Alu Ya5 taactgtggtgcttatatttggacatttacatctacatactttcttcaaaagataggtttacaattatttttacatctttactttcaatacaatttatct
tggttctcactaaatcctggggagtggagggttggactgagtttacacctcactgtgtgaattgaggaacttttactttcagacacagtggtttctgaaa
caccatactgaaattgttttaatatagctgaaagacagctgtacacagagaaactgggagtccaagttgtccaaactgctgatattttcaatatagccac
acctaaattgagtttcagtgttcaaaattaaaaacaaattaaattgtccagaatttgattgaggccataatctccacaataaagcccctaaGTAAAATTT
TTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAGTAAAATTTttcaaaaaccgctgctaatttcttctttgacctatgatgtaaaaatttgttttacattattttactcagccacagatgtgggtgcaa
acttcattttgagcacgacactcaataggcatatcaacttaatatgtattttaaacccaattccttatcacatttttaaattattttatttagcacttct
attgcatttactgggtacctggagctgttttaagtgcttttacaaatgtaaacacggtcctcacaaagctgaataagataggttctattataatcatatt
tccatttccactgatgaagaaagtgaggacagggcagaaaggtaacatatcacacaatgtgtatgttccagatttggacctaggcaacatgactccagtg
ttca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1852 chr2 166093030 166093339 RIP_Alu_chr2_166_01 0 + Ya5ACA923|10935 TGAGGCTACTACCCCTTCAA TGGCTGTTCAGAACTTTCAC SINE Alu Ya5 tcaattaacttataaataataatgaattaagtttcctatttcagccacagttattctctattagctgaaatgctccttctctcgcgctctctctctctct
ctctctctctctctctgtctctctgtctttccctctcttattagatttctacatataacttttcctgtttcagagggaattaattttttttcccagtata
catcccttctttggagaaggaagattgtttaagattggctttattgactctactgcactagagacaaaacagaaataagtaggcaaaggtatttatgtgg
aaatgttttaaccattagtattaggtgaaagttctttatagcttttagaatattgtcctgaggctactaccccttcaaggggcttaAAAGCTCCAGACCC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGCTCCAGACCCagcttttagtgaaagttctgaacagccaagttggaaagttatttttttaagctgaaagtaaaaggtagaaaaatgga
tagtataatagaactagaatattttcacttcttatttcaggggttgttttttacctgattaccctaattgatcttataaaaatgtgactatagtttgtgt
tgttgtattattatttttgtaataattataataatattttttgaagatctgaacttcaatatttgataatacaataataacatttgaatagctcatctct
atagagtaattcattacttcaaagtacaaaatcggaggaagctgcatggcatattgaaactcctgtgtttatctgcactaatcacttcctggtaccattg
tgctcaatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 60 393 70 NA intergenic
1876 chr2 169220984 169221281 RIP_Alu_chr2_169_01 0 - pAlu2-169359396|238889|Ya5ACA921 GAAGTTAATGAGGGTGCCCA ACTGAGCAGAGTGTATGACCG SINE Alu Ya5 gactgattttgaaagctaatatgcaggtgcatgtttagacatatacatgtgcatgtgcctgagtgagcaggcatatgtgcatgactgtatattgttaaat
cctacctaagacaaaactgtttcaagaaaacaaatatttagtggaatgaaggccaggatggagaaaggggactgctatttattgacagatactatatgcc
aaaagctttgcaatgtttaattcttttttagatcaacaataaccctttcaattaaatatttatttcatttaacagaaatataaactaaagctcaaagaag
ttaatgagggtgcccaaggtcttaaaggtagttaaatagcttagacaaaatttagatccgatcaatcataacataatctattaatAAAAACAATATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AACAATATTTTCcacactccctaaaataagaaaagtaaattaaagaggtattgttaaaatacttgtgatacggtcatacactctgctcagtaatcccact
tttaggtatttatctaagacaatctgtcagacaaagaagaaaggccacagatgtaaagattttcacgcacaattatctgcagagggaaaatggcaaatag
cttaatgagtcactacaaaatgactcagtgagcatctattatgtatcagccctgctctaggtgttggggatgctgcagtgaacaaaatcccatttttatg
gagcttacattctagcagagggagattaaaaataaaccaagcagtgtatgctatgccagatggtgagaagtgctagagagaaaaatacagcctgcta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 60 495 183 NA intron
1879 chr2 169711743 169712055 RIP_Alu_chr2_169_02 0 - Yb8NBC420 AAATGCCCAAGTTTCATTGC AACTGCCACAGCGATTCTTT SINE Alu Yb8 tgataacttatttatgagctgttgtttaatagaagttcttttctgtgggcaacctcgtcccctcactgctcacccccctcaccttggttccccctgctgt
gctctgtaacactgtgattgtctctggttgaagcctccatttccctgtctaggagcttctgtttacactccaccccactctagattgcaagccccttgaa
taatttttgtttcctagtaccaagaataatggtgacaaatattaggggatgactcctaaaaatggattaagaagctatttagggggaaaatgcccatttt
gtggttttaaaagatgctacaattgccataaaatgcccaagtttcattgcagaaatcaaatactggagttgtgttttgcttggtcAAGAGGAAAGAACTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAGGAAAGAACTGtacatttagagacaaagaatcgctgtggcagttaactttggtgttacattctgttttcttcctaagcaattct
ttagtcctctacctcaacggtgcctctgaagaaaggacttacgtggccaatgggatcaccgtgtatttatttcccttccctatcagccatagccctcagg
gctggaagggcctcattttagtctattcccagactgggtcacccacagtgttgacacacagcatcaaccgacagtgagcttatctggaaaataatgcctt
tctattttctttgtttcttagcatatattaaatgtttctttccttctctaataatcttttagataaagaaatcatttgctgagctgataataacaaaagt
atcctacctaca UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 430 103 NA intron
1890 chr2 171165395 171165664 RIP_Alu_chr2_171_01 0 - Yc1RG155 CATAAGTTAGCCCCACTGATATTTG CCCAGCTTACTCTGGAAATCAG SINE Alu Yc1 ttttctgtaagtcatccctaaaccatcgtgctcaggggtaggcagatatttactgtaagtaactagagcatgctgtaccagtcacggctaagaggacaac
tgctcagctgatggactgggtagtgttctcctagagcaccatgttgggagggattccaaggccacatcgaggctgtgaagaaaacatgccttgactgaag
agccaggtctgcagctagggttgaagagtgaagctgtgctcatacccatgtatttgccatccccatgccaggaggtttcctcacattctctttcctcttt
ttctccattttgttattttcttcattgctttttctttttgctgcttcattgttattatctaacataagttagccccactgatatttgttttAAAGAATCC
TTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC
GCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATCCccaagcaaggagttttaattca
gccactgatttccagagtaagctgggcaagcaaatccaaatgtccagatattatttaatgccttcataatgtcttttctcttgttttcctttattatttc
ttctttcctacaactgaactaattcatgaggttgcttataacacagaacatttggaaaatcagaaaagatagcctgggcttattattctgccaccattca
gtgttttggagaacagtgaaatgaatattaattcttgcatccactttttcaaaccaccactacagattcctggctaaatctacagagctatcaactacag
aaatgatttttctaattgactatgtgaaaagctgctgccagcagcatgggctccatgaaaaaggcaggg UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 62.5 364 86 NA intron
1912 chr2 173977251 173977552 RIP_Alu_chr2_173_01 0 - Ya5ACA924 AAGGGTGTGATTCTTGGAG GGCAATATACGATGTGGAAG SINE Alu Ya5 ttagacatataaaactccttctacataacctccaacctgtcacaagcaagggtgtgattcttggagctctagaagtttattataataaaaaattagagct
catgcctgtaatcccagcactttgggagactgaggtggggagatcacttaaggctgggagcctgagagcagcttgggcaacataaggagaccccatctct
acaaaatttaaaaattagctgggcatggtgacgtatgcctgtagtcccagctactcgggatgctgagtggagaggatcacttgagcccaggaatttgagg
ttgcagtgagctgagactgcaccactgcactccagcctgggcaacagagcaagactctgtctccaaaacaaacaaacaaaatggatAAAAAGTTAAAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGTTAAAGAGaattcttccacatcgtatattgcccattacaaaagatttctgctgatctctatcttcttcaggggagcatggctattttctttca
atttattgctatgacatgtcaggaggtctttctagctcagatttttttccctctctattaccaaataaagcaatttgtcttattttggatcagaataata
atggtaattaggtcataaggcatattgctgtgaaagtaaaaattcgatggagtatctttgaagcatgttaccaggatactttggagttgggtttgtggaa
aacatgagcttaaattaaggtaaagttttgatcctcagcagtactgcttgaacctgataacaaaactgtcactgaatgccagtgcacacagaggtccttg
t UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 693 377 NA intergenic
1919 chr2 174916147 174916452 RIP_Alu_chr2_174_01 0 + Ya5ACA928 TTTCATCTTTCTAGGCTTCACG TCCTAGCCATAAATCACAAATCA SINE Alu Ya5 cactccagcctgggcaacaatggcgaaactccctctcaaaaaaaaaagctttctgaggcctcgccagaagccaaacagatgctggtgctgtgtttatatg
gcctgcagaaccatgagccaaataaacctattttctttataaattacccagcctcaggtaaccctttacagcaatacaaaatggactaatgcagaagtac
agtaagtagcatgcatttgggtagaatggcctaaatttgaagtgagaagctttgagttctatttctggttgacataactataagtgtgaccatgaacaaa
ttatttcatctttctaggcttcacgtttctttttatgaggaaactagacaggaagatattcagctctgagattctattttctattGAAAATGAGCTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAGAAAATGAGCTTCTCaattctgatttgtgatttatggctaggataaggtttaaactattaatacaatatctcaaaaaattaaaacttgagattta
attcagggatttctgatgtattacactaatgatctcatgactacttgaacaaaatacttctagaataaaatactactttagaactctcgagactaaaatg
atgttaaaaatatttttaatcgctatactgtaatgaacacagactaccaaaaacatttattaatgttctttttttttttggcaggaatttcttttgttct
ttttttgagacagttttgctcttgttgcccaggctggagtgtaatggcgccatcttggctcactgcaacctctgcctgccaagttcaagcgattctcctg
cctca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 445 125 NA intron
1944 chr2 178144236 178144237 RIP_Alu_chr2_178_01 0 - pAlu2-178282738 NA NA SINE Alu Yb7 ctggagatgaaaaatataatgtctgagattaaaaatatatttaatgggattaagagcagaaaagacatagcaaaataaaacagtagtgaacttcaagaca
tagcaacaggaactaaaagaaaaaaatgagaagagtagcagtgagctgtggaacttcaaagagcctaataagtgagtaaatagagtccctaaaggtcagc
ggggaggggggtttattggatagttgaagaaataatggacaaagtttttcaaaatttgatgaaaactataaagccacaaatcaaaaaagcttaacgaatc
ctcaacaaaagaaacacagagaaaaactacaccaaggtccatgacaatcaaattgctcaaaccagtgataacaagaaaatcttaaAAGTAGCCAGAGGGG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGTAGCCAGAGGGGgctgggcacagtggctcacgcctataatcccagcactttgggaggccgaggtgggcggat
cacctgagatcgggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggctcaagcttgta
atcccagctacttgggaggctgaggtaggagaatcacttgaacccgggaggcagaggttgtggtgaaccactgcactccagcctgctgagcgacagagta
agactctgtctccaaaaaaaaaaaaaaaaaaaaaaattactactgattttcttagacatgataatggtattatagttatgaagaagaacactattcttct
gtctttaggagatggtgctgatgta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1944 chr2 178176973 178176974 RIP_Alu_chr2_178_02 0 - pAlu2-178315479 NA NA SINE Alu Yb7 gacatcgttatttccaaactaacaattttatttatctcttttagagaataataacacgttatatctaacactgatatgctgattaaaaaacattattttc
ctcctcttcataggctacagcaggaaatgtattttctgagaacgtcttaaaaatcatttacccatctactgaataaaggaggagattatactggactgcc
acttatgagaaagaatcacattaatcttccactaaatcctcctttctagtttctcacaaggcagtgaagtattgaaagaggatacttcctcacatggaca
aagatcggatgagagactttagtagaatccttctaatgctagtataaggttgcttaatttatttccttcagtaagaatagtaataaaaATATACATATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGAGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAATATATATATATACATATAGcccactttgctatttgtgaacagtcatgtatgttctttcccaaaagatatttatcca
aaattacagtttcccatttcaaaagcaacttgaatctgaaaatattgcaaagatggaagtgctataaaatgacagtgaagaattacaagcaaccaattca
ttattcaatcaagaatttggcacaatcataagccatgtaccatctactttaatggatcttaattcccctgctatcaactgaaattccaaatcccaaattg
aacaatgactagttccaaaacctgattttttcaatttttctgcctgaaaacactattacaaaggaaggcagcaaatactgtaccactcttgacatatgag
acttgtatgttctacaaactaatatacaact Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1971 chr2 181751343 181751655 RIP_Alu_chr2_181_01 0 - pAlu2-181889756 NA NA SINE Alu Yb7 tgacttatcaaatatttagaagtaagtcaacttaaaaaaaaaaaaaaggtcacataacgaaacaaaatgtgtgaaatttcaggtctaaacatcactttat
caagtcagctacccaagtttctgaagttcacatgtggcaggcattttttaaagttatgaattatacacaaatgattttatctgaggttatataatcataa
tctagttcaattctcattggctatcattttaatatccattactactacactttatataactaattaattaaaaaaggaagggagaacaagaagccttcta
ttattaaagtagttgcctaaaagcatacagcagcatggaaggagcaggaaaaggaggcactggtttcagacacattgctttactcttgttAGAAGTGGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAGAAGTGGTCtgtgcacctaaatacttttaaaagtagagattccattaatgatggtgacaaaataattatagagtggtatgccattaa
caaattaaatgaaggtattgagaaacttttggcctagtctacttcaaatggcattggtaatttcctcacaaactgttttatggggatctttctatgaata
acatttacctctcaatctacatttaaagctaactaaaaaaaaaaaaaaaaaaaaaaaaaaagcactcgtttttgtagtcttattgtacatgttaataaag
atttgcttaccagggttgcagtctgtcaaaagggaacaaatagacagcaaaacctttgaaatagtcaaagcgggactccagttgtctttaaggatgtcca
gacagatgactc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1974 chr2 182087706 182087707 RIP_Alu_chr2_182_03 0 + pAlu2-182226223 NA NA SINE Alu Yc1 tacattgagcgtataacttgatataaacaacaacaaatattattttgtctgacaaagtctaggttctcaggctgaaacagggagcaaggcacacagatga
ctcttttcatggggagtacattatggcggggaagacctagaagcaataaataaacaaacaattaagaaaaaaatattccagaaagacatgatatggaaat
aagagttggctgggcaactactttcctggaagatcttttacaagtctactctctgaggaagctagaagagcataattctcatcaagaggtagcaaatccc
tatcatgcctccttttgcctgctggaactttagagggagaaagaggaacaggcatgactgaagacaataagtaaaagagccaacAAGAAGGAATACAGAG
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAG
GAATACAGAGccaaacgtggccagatgaacatgtgcccacgggaatatgtgggcatactgagtggccagcgccaccacagaggctctaagcctatcaagc
taaagtcacgtacctcaagccctcttctttacagatggcatctaaagaatgacaagactcacccaattcatatttagagattttgaaccagagctggaag
ttagacttcctggtgtatttcatttacatatctaccaagaattgccttcatctgagttacttgcaatgtgggcactaataaatatgattactgagcaaga
atcaaggaatgataccatggggtttacagtacccacaaaattagatatccactaaatgtactatgtggcagataatagatcagtgtgtcagtac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1974 chr2 182181489 182181792 RIP_Alu_chr2_182_01 0 + Yg6AH86 AACAAGCCTTGGTAGTGAAG ACCCAAGTGTCCTCTGTATG SINE Alu Yg6 catactaataattttgatttatactaaaagaatgaaataaaatgttcagataagaagtaaaagcaatcattaaatacctatgttctgtatattgtgtccc
aaattaagttgcataggcttggaaaacatttattgtatatatttcaaaacatatctttctcatttgaataatgatagctagaactttattatataacaga
tccaagcgtaatccaggaagagtctgaatctatatatgtgatagccagagattgaatatacccaagtgtcctctgtatggaaaaaaatttatctgggcct
ttttaatattttggctgaaaaggctcatctgtatttttcctaaatatttgccttaatctagatcactcttgctaataacaggtactgtAAGAATTACATC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACAAGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAGAATTACATCaaccacttcactaccaaggcttgttatttttttcatgtgttatgaagaatcaatatataggaaattctagagatgtaaccacagt
ggtggaagtataaacccagccctgattaaaataaattgctgtcttcccttcaatggctataaaatacttttccccactccttcttctcacatccctcttc
tcctcctcctcctctttctcttccttaccattcctgctcctctgttcctgtatgtatatattctgcacaaatctgactccagttattccaaaccaattgc
cattcttcacatgtgccatgctgcctattgcttccctgcccttgcacaggcatttccctgcctctaaattgcatttccccttttcttcacctgtctatga
cct UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 55 481 166 NA intron
1976 chr2 182390761 182391074 RIP_Alu_chr2_182_02 0 - pAlu2-182529181 NA NA SINE Alu Yc1 ggtccacttgtcacctggatgtgcacacaaccatcaaacttagcataaacagtctttagcccaacaaatttctcattaaccttgctctactcccagactt
ccctgtaccacttacctaattgcttaaatcagaaaccagagaaaacccttgactactcatttaacccaatatcaaatagttatgtgcagttacaagttat
ggacaactcaatttacagtagcttaaatgttgttgttttctttttctcacataagtaggttcaaggcagattgctgtggtgttgattcaataacctaaaa
atgtccagcaatatttctacaattcgtgtggtattccctgatggaattgagaaagaactgcatctccttcatgttcaaaagaaacAGAAGTAGAAAGAAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGGCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAGTAGAAAGAAGcagtcttgtgagtctcttttacaaggaaacagcttttcctgaagagcctcctagtagacttctctttacagt
tcactgtgcagaataggccggatcactaccccagctataagggagactgagaaaacagggaacaggattgttataattgaactattccaaacaagatcca
tttattcaagatgaacacattggctcctcagaaagccagagttcctttagcaggaaaaaagtgaaaatacatattgactaaataacttgaaatatctgca
acaaatccccgcccccacctttctgccaaccaaatatcaagttgggtcttatcctttaaatatcttgaaaatatgtctattccttcaccactgcccccat
tttaatgtaaact UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1989 chr2 184075487 184075815 RIP_Alu_chr2_184_01 0 - pAlu2-184213921|5056|Ya5ACA937 TACTCGTGCAGCAAAATCCA ACAGCGGAGTGAACGTATCC SINE Alu Ya5 catgttggtcaggctggtctcaaactcccaacctcagtactgcttcattaccactcccaatcacaaattctactgatggttaatttgtaggctgagatca
caaatcatcatgaaacacaggtggtattctagagtttccttgtgatacaactctgttgagtaggcttcaattctgttgtacttgcaacatttgaaaacta
aatggtaagatgacttgcaagtagctgttgaataatgaatgatgtggtatagccacaaggatacagtaattaatatttaagagtgacaggctcacctccc
tgggaatggagcagaaagtccagcacaatgagtggctatataaaaagattactcgtgcagcaaaatccagaagctaaactctagtAAAAATCCATAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCATAAACAactgattcgtcaaataattaatttccttcctttatttagtgtacaaagtatttttgg
gtctacagtgttttgaaaagggatacgttcactccgctgtttttgtatgagacccacttctacacattttcttgctacttgtaagtagtaagtacaaccc
ctcccaaatgttggggtagcatcactaatctgattagtagagagggttcagatgactgaggggtcactaatctgatgagtcagggcccagaacatgcact
gggtcatggtttgctagaggttgaggttattgggccttcaagtcagcactctgaaggatggctgtctcttctattttctgtcccaaactttttcacacct
cctctacatccccaactgtgtcatcagt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison plus genotyping|Genome comparison|Candidate screening NA 0 0 0 NA intergenic
2032 chr2 189679463 189679464 RIP_Alu_chr2_189_02 0 + Yb8COL3A1 ACCTGCAGCACCAGGAGGTCCTGGAGGGCC GAGTCCTTTAGAAGGATATGCTCTG SINE Alu Yb8 taataaaggaattccctcatcattagccatcaaaatagtccacttcccagagctgataaaaattctgtatatattaaatatagatttcatttttctgtaa
acactcagttcactcatatctaatctactgataaatatagttatatatttacatatgtaaatatacatatacatatatcttagacagtagaaataaacat
aatcttagagagtcctttagaaggatatgctctgtaaataagcaagtaaaatagtttaaatacaacatttcatgacatttagaaatacctttatatttag
atatatttaatattcctaaacgtgtagaaatgcatttggatttataaatacacatacgtaatatatgatgcttttaatttttattaacagtaagttgata
nnnnnNNNNNNNNNNnnnnntaatagaggtataatattaactcagtaagtatcattttcattatcagaaacattaaaagtattttctaaaaggaggttcc
ttccaggaatacatacactgtgtaataataaattgtaacagaaaaatttacaaatctattcattttttatttccttattttcagggccctccaggacctc
ctggtgctataggtccatctggtcctgctggaaaagatgtaagtttttaaaacttaaataagaatacagcaaaatttaacttggtgtattctaaacagta
tatgctttatgtcagaatcccagaagaaaaaaaaatgttattcaaaatattgttgtcttaacaacattttagttaatactaatttttgagtagctataca
gtatttgcgtttctatatat Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening|Direct sequencing precise insertion position unknown TSD unavailable 0 0 0 NA intron
2032 chr2 189784928 189784929 RIP_Alu_chr2_189_01 0 + 9148|pAlu2-189923457 NA NA SINE Alu Ya5 gtaaatatcaaaagcaaattagaatttgggagctcattaaaagtatctatttttatatctccaagtgagctgaattacataattcttatattaaggtaaa
tgttacatttattatcattcccttccatttccaagatactcaaatacctccgcagtaatctacaataaaaaagtactttgaggttgccactaggtggcga
tgtttaaacatccacaagtagaaaagacgaatgaccgggaactgttaaagaacttcatttctctcgtttctctctctctctctttctctctgacacacac
acacacacacacacacacacacacacacacacacacacacacacacacacataaatgttatagatgttaagatctagtatatttcccAAGAAACATACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAACATACCAtagtggttaagtgtcatgtgcaactagaacttagcacatcattgacggtccatctcctgacagtttgctagcttgtcactatgaagttat
ctgaacaatacacttaaaactgaggacgtgtgatgagagacagtcatgaaaatcattggctaatcctgaaggtcttgtaggagtatctcatactgaacta
ctgacatactagttctcagtccagagctattttgcctggatttggcaatgtcaagaaacatttttaactgtcacaattgtatgggggatggcagtttcaa
ctggcatctagtgggtagataccaggaatgccgcaaaacttcctacaatgcatatggaattatttggcctaacatatcaatagtgttaacagtgaga Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
2046 chr2 191506300 191506380 RIP_Alu_chr2_191_01 0 - 1789 NA NA SINE Alu Y aattatgagtagacattggtaatccaaggagaggctaaattcaaggttggcaggatggtaaatgatgatgcatgttcagaagtctagagcagacagtatg
gaagagtcaagcagcacaggacatttccaagaaatctttgagaaaacagggcaggaagacagggaagacccagtgccaagggactacaacgttgataaaa
ataagaaatgggggctggacatggtagctcatgcctgtaatcccagcacttcgggaggtcaaggtgggtggctgacttgagctcaagagttcaagaccaa
cctgggcaatatggtgagatcccatctctataaaaaagaaaaacaggaatgaaaaatggaaaaacacatcagtcaagaagaagttAAAGAAGAGAGTTCC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGAGTTCCtcctt
gagtacctgtgaccttgggaaagacagagaaacccctggcagaagatgccagagaggtagctcatctttctcacagtgatattagggtaggtgaggaaga
ctgtttttcaatgatcacagatgagcgtaattatttgcaaacgccattgatgtgtgaaatgaaaaaagattattaaggcaaatgtattgactattttttt
taattccaggagagagacagcagcaggctaactagttgtctgttaagaacatccagagcaggaccagaatctgggccaggaactgagagacagattggga
caacggaacaaatctaccagggtatgctggccaacttagtcttctattatgatcaaggaaggatggcgcctgagaggtca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2052 chr2 192384919 192385237 RIP_Alu_chr2_192_01 0 + pAlu2-192523336 NA NA SINE Alu Ya5 ctctccctaaccaccacacaaacagtaaaaaaccatgggtgaattctattaagaatggagaaaattttccaaaaatggctcaaagtccagaagcattaaa
ggaaagattgatcaatttgactacatttacatgttaaaaaataaaatgacaactgggaaaaacatttgtaacatcacaaagggctaatattcctaacata
aaaagaacttgtataaatagagaagacaaaacacactatggaaaagtgggcaaaagatatggacagttcacagaaaaaaagttcaaatggcccttaagta
tataaaaagatgctcaacttcactcataatgaaagatgtaaattaaaataccaccaagataacattcttcacttttagattggaaaaaatATGAAAGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATGAAAGTTTgaaaacacacttgcttggccaggtgtggtggctcatgcctgtaatcccagcgctttgagaggccaaggtggg
tggatcacctgaggtcaggcattcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatttactgggcataatggtgcgca
cctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagattgcacctctgcactccaacc
tgggcgacgagagtgtaactctgtctcaaaaaagaaaatattctcttggtaacactattggaataggaacattcactgatggaggaaatgcaaaactgta
taatctctgttatagggg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2052 chr2 192387711 192388035 RIP_Alu_chr2_192_02 0 + pAlu2-192526128 NA NA SINE Alu Ya4 taaaaacacagtataaaagtcaaaaaatggtacacttgcaagggcacttaccaggaatggagcttagaggttggaagttgctctgtatgagtcagtgagt
gagtggtgagtgaatgtggaggcctaggaaattattctacactactgtagaatttatgaacatttgggctacactaaatttataaaaaacattttcttct
tcaataatgagttagctcactgtaacttactttttaaactttttaaatgttttttaagtttttaactcttgtaataacacttagcttaaaacacacattg
tacagctgtacaaaaatattttctttatgtcattctataagctttttaaaatattttcaaatgtatttttttttttaaagcttaaaaaaAACATGTAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAACATGTAAGAcacccacatattagcctagacctacacagggtcaggatcattaatatcagtgtcttccatctcca
catcttgtcccactggaaggtcttgaggggcaataacatgtatggagctgtcatttcctatgataacaatgccttctggaaggcttcctgaaggacctgc
ctgaggctctttttgaggcagtgtcactcttttcagaaatatgtccatggtggtttactcaatttgcttcttttttattcatagatttgcatatgtaatg
cattgcgctataccattaagacagctatgatgtcactgcagttacagtgtcactaggtgatagaaattgtccagctccattacaaccttatggaaccact
ggtgcatacgtggttcattgtggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2066 chr2 194224014 194224339 RIP_Alu_chr2_194_01 0 + Ya5ACA949 CTTTGGTGTTTGCCAAAGTT TGGCACAATTGAAACAGGAG SINE Alu Ya5 cccatatactcaaatgatgtacacaataatgtttcttccatagataactattgaaaatctgtagaatctcaggtaaaggttatagaaacggttcctgtga
tgcaaggaaatggaagagaattttaggctgctataggctgcaagacagaacagaataatattctgaagagtgtagtcttggttgattaggattatgggag
attcttgaaattaaattatatgaataaatttatgaggaaaaagggtcttgatgttttcactctgatgacaatgtttgatgtaaagataataaggtggaaa
ttataagctaaaatgttatctactttggtgtttgccaaagtttaaaagagatgaacagtgagatacaggaaagacaacttgatttAAGATATTTCTCATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGATATTTCTCATTatggtcatactttaactttctatagttcagtatttagtctcctgtttcaattgtgccaga
tgtaaattttcatttttttttcattttggattagaaccaaagatatatgttcagataaggcgaacttctatctatggaactgacttataaaaaacagaat
gtcacacaataaaattacttatttccagtgttatgaaggtttttaaatcttttccagaacactttttctttatagaatggagaaaacaaagaaaaaatat
acatacacacacacataatttgaatgtatataacctcatccattaaatgttgatttcagatacggaaacatcattttgtctctcctggctcttggttact
agctaatagccaatcaggatcatat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 476 136 NA intergenic
2075 chr2 195303144 195303241 RIP_Alu_chr2_195_01 0 - 13848 NA NA SINE Alu Yb8 aaaatgatgagacatataaagaaaaaaagaatgtatggtcaatatgtggggggggggggagggtggaaatgtcaatagaaactttccctaaagaagtata
gatattggacttccaagacaagtattttattttgttttgtttttgagacagggtcttgctatgttgcccaggctaatgttgaactcctgggatcaagcaa
tcctgctgtgacctcacgagtaggcgtgaacacaggcacatgtcaccatggccctgcttacaagaaaattattttaaatcaacagttataaatgcatcaa
agaaataaaggaaagtatgtctgaagatcaaaaggaaagtagaagtatgatgccccaccaaatagaacatataaaaatatagaagtcatAAAAACATCCA
AGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA
AACATCCAaatagaaatactgtagttgactcatctaataaataaaataaaatatttattagagaggctcattagcagatttgggctagtagaagaaagaa
tcagtgaacttgtggaaatcagaacagttgaaattatacactttgaacaacacaaaagaaaaagaaagagaaaaattaaatactgcctcagcaatctgta
gggtaccaacaagcataaaaacacacacatagggattagacaacttagggagaggctgaagtttttgaagtttttatttgcttcagtgcacttagaccag
ggttgtccaatcttggcttccctaagccacactagaagaataagaattgtcttgggtcacatgtaaaatacactaacactaacaatagctgatgagc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2079 chr2 195856826 195857120 RIP_Alu_chr2_195_02 0 - pAlu2-195995238 NA NA SINE Alu Ye5 gtttcatctacattaaacatctgttgtttagtgcagccatcttcatcaatgatcttagtgaggtcttctagacaatttgctgcagcttctacatcagcac
ttgctccttcaccttgcatttttatgttatggaggtgacctctttccttaactcttatgagccaacctctattagctttcaacttttcttctgcagcttc
ctcatcattctcagccttcatagaattaaaaagagttggggtcttgctctggagtaggctttggctttggggaaggttgtgattggtttgatctatccag
gccatgaacatttcatcatatcagcagtacggctgttttgctttcttatcatctgtgtgttaactggactggcacttttaatatccttcAAAAACTTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAC
TTTTCctttgcttttgcaacttggctatttgtcctatttgtcacaaaaggcctagctgtcagcctgtcttggcttttgacatgccttcctcactaggttt
aatcattctggcttctgatttaaagtgagaaatgtgagattcttccattcacttgaacacatacaggccattttagggttattaattagcctaatgtcaa
tacagttgtttctcaggaaatagggtggcctgagaagagaaaaagagatggggaaatgtctggttggtggagcagtcaaaacacacacaacatttactga
ttccattggctttcttatatgggtgtgctttgtgtcaccccaaaacaattataataataacatcaaagatcactgatcaaagattaccataaca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2084 chr2 196561933 196562196 RIP_Alu_chr2_196_01 0 + 8629|Ya5ACA953 GCTTTGCAATTCTTTTGGCA TCACTTTGAACCAGTTTCCCTT SINE Alu Ya5 catattaaaattaaaataagggtcttgctctatcacccaggctgaagcgcagtggtgccatcatagctcactgcatcctcaaactcctaacttcaagcaa
ttctcccgcctcagcctcctgaagtgctgggattacaggcatgagcctcctctaccacttcttataagaaaatgctcatccacatacctattcccaagag
agcttaaatacatttttatatagtttctatgctctcaagaatttgctttgcaattcttttggcatctagtaatactatacaaataagtaatgtaaaaaaa
aaaaaccacattcacttcttataaaaacatctccttaaaaagtgttccatttcaaatttatttgaagtcaaactaacaaggattAAACTACTTAAGGGAA
GGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGC
GCCTGTAGTCCCAGCTACTTGGGAGGCTTAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC
CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTACTTAAGGGAAactggttcaaagtgacaccta
ctttgaaatattctataaatcaacagaaattcctaaatctgcatatgggagataaagcattttaaacatcataaaatatctcagtgttaaatatttttaa
aatttttctgaacactggccttcaaaatgccaaataactgaatatatttcagcaatataaattgaagaatattctttttacccagttgttggcatggcaa
atctttgtttctcacataatcccatttcaataacaggaaaatttacctcatgaacccaaagacgtttaatcacttctgtggtttctgttgtttctggtct
tgacaaacaaacaccttgaatgacacgggagaaatcacggaggttgaacaagtagtgagattt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 450 171 NA intron
2129 chr2 202456966 202456967 RIP_Alu_chr2_202_02 0 + pAlu2-202595483 NA NA SINE Alu Ya5 cagaaatagttcattaagaacccctaggctgggcgtggtggctcatccctgtaatcccagaactttgggaggtcgaggcgggtggatcacctgaggtcag
gagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaataccaaaaaaattagctgggcatggtggtgagcacctgtaatcccagct
actcgggaggctgaggcaggaaaattgcttgaacctgggaggcagaggttgtggtgagctgagattgcaccattgcattccagcctgggcgacaagagca
aaactcagtttcaaaaaaaataaaataaaaaaaagcaaagacttggaaccaacctacatgtccaacaaggatagactggattaagaaAATGTGGCACATA
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATGTGGCACATAtacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaactggaaaccat
cgttctcagcaaactatcgcaaggagaaaaaaacaaacaccgcatgttctcactcataggtgggaattgaaaaatgagaacacatggacacagtaagggg
aacatcacacactggggcctgttgtggggtggagggagcggggagggatagcattaggagatatacctaatgctaaatgatgagttaatgggtgcagcat
accaacatggcacatgtatacataagtaacaaacctacacgttgtgcacatgtaccctaaaacttaaagcataataataataaaatttaaaaaaaaaaga
aagaaaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
2130 chr2 202547170 202547475 RIP_Alu_chr2_202_01 0 + pAlu2-202685587|10606 NA NA SINE Alu Yb8 aagaacaagtttcttgtggagccgtggtccagtctgcaaattgctcctatctccagttgccatggtttccaggagaacgtggctctcatcttttcctgcc
ctgcctgtacttctccctgtccactctgttctctattttccctcagcttcctaactgagaatgccagcagaagtttagagtcacagatggattgtaggaa
acaatttggatgatgccaatacaaagctactgtggtgggcatatgctgctcccccaaacttcagacatttgggtttcaggttggtccaggcaatcaacag
tgatccttaatacaaaatgtcttggtgagagcaataatcaagaaacttggccaaagtgcttccctgccagattgtgtgcttaatAAGATAACTGGGTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAGATAACTGGGTTCCaataaaacagagaaaatatgttacattttaaaaaattttctgttgtttcaaaacaatgtgcagtttttctatataagaa
gaaaagtctccaggcccaacatccatagggctcatcatccattgtttttcttttaagttttcaatttaatccaaataagtcaaaaattttcaggtaccta
ctatctgccaggtgctgtgccgtgcgctggggctacacagatggagagggtgcattcttggatctctagtgtttgggtttggattcattcacccacactc
tttcaccagttctctttgttactggggtgctcatttgtgagccctgcttccatggcttggagagtttgtggctgtgggccaggctgagcttatggagcaa
aggga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
2137 chr2 203543305 203543598 RIP_Alu_chr2_203_01 0 + pAlu2-203681722 NA NA SINE Alu Yb3a1 aaaaaaaaaaaaaaaaaaaagtgtacctatttctccacatcctctccagcacctattgttttctgactttttaatgatcaccattctaactggtgtgaga
tggtatctcattgtggttttcatttgcatttctctgatggccagtgatgaaaatgctcatcatcactggccatcagagaaatgcatatgaccaatggaac
agaacagagccctcagaaataataccacacatctacaaccatctgatcgttgacaaacctgacaagaaatggggaaaggagtccctatttaataaatggt
gctggtaaaactggctagccatatatagaaagctgaaaccagaacccttccttacaccttatacaaaaattaattcaagattgatcaAAGACTTAAATGT
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACATGA
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTG
AACCCAGGAGGCGGAGCTTGCAGTGAGCCGGGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAAAAAAAAAAAAGACTT
AAATGTtagacctaaaaccataaaaaccctagaagaaaacctaggccataccattcaggacataggcatgggcaaggacttcatgtctaaaacagcaaaa
gcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagggcttctgcacagcaaaagaaactaccatcagagtgaacaggcaaccta
cagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctgcaaagaactcaaacaaatttacaagaaaaaaaaacccca
tcaaaaagtgggcaaagaatatgaacacacactgctcaaaagaagacatttatgcagccaacagacacgtgaaagaaaagaattttcaaccca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
2144 chr2 204389186 204389486 RIP_Alu_chr2_204_01 0 + pAlu2-204527603 NA NA SINE Alu Y ctccgggacacagttaagcagagttaagagggaagtttatagcactaaatacccatatcagaaagcaggaaagatctgaaattgacaccctaacatcaaa
agtaaagtaaatagagaagcaagagcaaacaaattcaaaagctagcagaagacaataaataactaagatcagagcagaactgaaggagatagagacatga
aaagcccttcagaaattcagtgaatccaggagctggtgttttgaaaagattaacaaaatagatagaccactagccagactaataaagaagaaaagagaga
agaatcaaatagacacaataaaaaatgatgaaggggatatcaccactgatcccacagaaatacaaactaccatcagaaaatactatAAACACCTCTATGC
GGCCGGGTGCAGTGGCTCACGCCTGTAATCTCAGCACTTTAGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGGTTGAGACCATCCTGGCTAACATGG
TGAAACTCCATCTCTATTAAAAACACAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCTGGGAGGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAGAAAAAAAAAACCA
AAACACCTCTATGCaaataaactagaaaatctagaagaaatggataaattcctggacacatacaccctcccaagactaaaccatggagaagtcaaatctc
tgaatagaccaataacaagttctgaaatggaggcagtaattaataccctatcaaccagaaaaagcccaggaccagacagagtcacagctgaattctacca
gaggtacaaagaggagctggtaccatttcttctgaaactattccaaaaattagaaaaagagggattcctccctaactcattttatgaggccagcatcatc
ctgataccaaactctggcagagacacaacaaaaaaagaaaatttcaggcgaatatccttgatgaacattgatgccaaaatcctcaataaaatactggcaa
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2160 chr2 206556705 206557011 RIP_Alu_chr2_206_01 0 + Ya5499|9131|pAlu2-206695121 TCCACCAATTTGAGCTGTCA GCTGAGCTGGACTTGGATGT SINE Alu Ya5 catctcttctgaatggtcagttcaattaccacactgatggttaaatgtttttaccaacacccctgggattataaagattaggagggagaaatatgccaac
agtactggaaatggtcatgccacccgtcctgtcattgttaaaaaatcattttgcctttgattctgggaagcacacgcctgggaatactccccaggcctct
cacttgaccccaatagaactgtcccttttatgccaccaaatgagcttcgtgattagtcatgcctgtttcagctggctaagtgcccaagcagtgcctgagg
ctggtccaagtgtttcttccaccaatttgagctgtcaaatccactcattttcctaggttagtagtggcagtacagtcatcctcAAAAGAGACATTTCCTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAGACATTTCCTGagggccaaggctcacgtgttccctagaatcacatccaagtccagctcagcctggtgtgatgtaggctggaaccatga
ttaggaattcagagaagcaaatccagctgctccacacttggaccattccactcctgacgcttgttccaagttatagctgacaggctgcctatgttttcct
aggttccccatccacagatttagataagagagaggtgttcttgctgtagtcattgactttataatttgggagttttcatataattgggggtttaggtttt
tttcatggttcaagctggtcccatattttacatccctctctctccctattagggctcaggatgctgaattgtgattttgcatttgcacatttgtatcctc
cactgg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison|Candidate screening NA 60 456 133 NA intergenic
2169 chr2 207716172 207716488 RIP_Alu_chr2_207_01 0 + Yc1NBC31 TTCTGTAAAAGCCTGTTAGGTCCA CAGCATTTCACTGTCAGCATTGG SINE Alu Yc1 agagattcacctcacctgtaaagaacacacacaaactgaaagcgaagggatggaaaagatagtacacacaaatggaaactaaaagtgagcaaaagtagcc
atacttttatcagataaaatagacttgaaattataaaacccccaaagagaccaagaaaatcattacataatgacaaaggaatcaactcaggaagagaata
taacaattataaatatatatgcatccaacaccagcacacacagatacataaaacaaatattattagagctaaagggagagatagaccttaaaaaaaataa
ggtggaatttcaactctcagcatttcactgtcagcattggacagatcgtctacacagaaaatcaacaaagaaactttggacttAAACAGCACTATAGTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAACAAAAA
CAACAACAACAAAAAAAAACAGCACTATAGTCCaagtggacctaacaggcttttacagaatattttatacaatagtttcagaatgcacattcttctcact
ggtacatgaaacactaagatagaccatatgttaggccataaaatcagtctcaacaaatttttagaaattgaaatcatatcatgcatcttttcaggtcaca
atggaatgaaaccagaagtgaataacagaaggaactttggaaactgtaccaccagatgtaaattaaacaacctactcctgaacagccaatgaagaaatta
aaggtcaatgaagaaattaaagatactacaaaatgtattgaaacaagtgaaaatagaaatacaacataccaaaacctatgaaatacagcaaaagcagtac
tgagagggaagtttat UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 443 110 NA intergenic
2174 chr2 208392730 208393036 RIP_Alu_chr2_208_01 0 - Ya5ACA784 GAAAGTCCCTCAGGAAACCC GGGCATACCTTGCTTCAAAA SINE Alu Ya5 cactgcaacctctacctcctgggttcaagcgattctcctgcctcagcttcccaagtagctgggacaacaggcatgtgacaccacgccaggctaatttttt
ggtatttttttgtagagacagggtttcaccatattggtcaggctggtcttgtactcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgg
gattacaggaatgagccacggcacgggcctatcattgctacatttaactagcaattaccatgtgaatgtgtactgggtattgctttacatgattaactaa
tacccacaaaaatcccaggatatgtaatatgaaagtccctcaggaaaccctccaccaagaccaaagacctgcctaactccatcacataagaatttccctT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAATggatggaatgagcagactgtgtgctatggcctgtttttgaagcaaggtatgcccaggtctgggtgcccttccccagaagtatcaggggaggag
tctgcaacatctgtaaactctgcttagtcctcttttgggtagaaatcatactcttctggcattttatgtttctataaaagaatagggagaaacctgcccc
tcagagttctcagtgaggtagaagggccacaattaggtagcaattatgattaggtatctatatagaggaaaggaacaaacagggtcagaaaaataaatat
tccctattgatatcctaacaaggccttgactgaaagcaaaacaaacacagaatgagcaatgcagcttctgaggctcaagacaatttggataattaattat
aattaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 431 115 NA intergenic
2177 chr2 208784626 208784959 RIP_Alu_chr2_208_03 0 - pAlu2-208923058 NA NA SINE Alu Yb7 cacctctacaaaaataaataaatatatacattttttaagtgctcactatgtgtttctgtggctgttgttatatctattgtattgtattctacattgtata
ttttattattgtctagttaatatattattatccttttcatcagttagaattgagtttttatttagattcaaagcaccacaaatacccactgcaatcttaa
aaacaacaattcatatccctggttttgatacccatagttgtaagaaaagcaagagaaaaccggctgggtagagcggctcacacctgtaatcctagaactt
tggaatgccgaagcaggagtattgcttgagggcaggagctcaaggccagcctgggcaacatgttgagactctatctctacaatctttaaaAAGTTAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTAACTGGGCggcggccaggcctgtggctcacacctgtaatcccagcactttgggaggccaagg
tgggcagatcaggaggtcagcagatcaagaccatcctggctaaaacggggaaacccagtctctactaaaaatacaaaaaattagccaggtgtggtggcgg
gcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaattcaggaggcggagcttgcagtgagctgagatggcgccactgcactcca
gcctgggcgacagagcgagactctgtctcaaaaaaaaaaaaaaaaaaagttaaccgggcatggtgttgagtgcctgtaatcccacctactcaggaggctg
aggcaggaagatcacttgagcacagggggtggaggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2178 chr2 208886674 208886983 RIP_Alu_chr2_208_02 0 - pAlu2-209025091 NA NA SINE Alu Ya5 aaaaatattaaaataataaaaaaaaagaaaatatgatgtttatacttcaggagcttactatcaaaataggagattccaaagaaattcactagtagaacac
tttaaaagggctggataaatacaatgaagaaagaggcaaacactactttataatagtaataactaccatttgcaaaagacttattataatgttccaagcc
aacattatatatatgatatttctaatatttaggagaacccataaggtagattttcattaacaacactttacagaagagagaaataaagtgcagaagtaac
ttacccaaaatcacatagttatcattctattaacttaccatgtactactgctacttttcagtaatttaaatataaattttggtgaagatGAAAAATTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAAATTCCTatcaatattctgtggaagtggcaatgttctgtgacatttccacaatatcaaggtaatatatatgtagatataatattgta
agaattttaaagactttgaaagggacattgaagtctgatgaagatgcagtacttgggaagtcagaattgcagaaatggtctttctctggctaggtattcc
tcctctgtcccatctgtataaaacatggatattatttttatatctgcctcaaggatacgctatgagaactgagaatttcctaactatggcataaaagtgt
tctttgctgttgtgttatttgttttgattttaatgtcttgagaataaaaggtataagaagacgtgaatttcccccaaagctaaagcagcctagctggagg
gccctcgtt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2181 chr2 209277237 209277550 RIP_Alu_chr2_209_01 0 - pAlu2-209415649|13791 NA NA SINE Alu Yb9 atcttttcaaaataaaatattagatgcatacaataatatatttatgccagttataaataaagcacaataatgtagtttacatctagggacccagcaacca
aaccaaaaattggaacaccactaaaacatgcatcaatccatgagtttcttcactattccagatccctgctaaccccagaagtaatcatattagtgatgtt
attgataaatcatatgacttattagattatatatacacattatatattaggaatatttgatatatactatgtaacatattggcctgtatattacaaaaac
tgtatgtataaactattatatatgtataactaaatacttatatttcaaatatatcatgtttagttttgcttgcttttttgctttatAAAAATCAACAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATCAACAAACatgtttctaatgtttgtttttggtgttaaatacagctgtaattcaaacattttagtctgtgtttcataatatt
gcagttcatgaacacatgactttattcaccattcttttatcaatatttttgtttccactttaattataaaccaggctgttacggctattccttccttcct
tccttccttccttaattgccaagctcatttgatataatattatggctattcttacaatgcacaagaagtttctagaatgtacactcagaaatgaaattgc
tgagtcataggccatgtgactattcaaacttacatgattaatgccaacaacaaatttttacgcctatcaaaagcatataagcattttcattggctcacaa
cttctccatcact UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
2205 chr2 212376765 212377048 RIP_Alu_chr2_212_01 0 - pAlu2-212515181 NA NA SINE Alu Yb7 ttcttctgcctcagcctcccaagtaactgggactacaggcgcccaccaccacgcctggctaactttttgtacttttttttttttaagtagagatggggtt
tcaccatgttagcccaggatggtctcgatctcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccacgccc
agcccagtattgggttttaacccaactcttgtggtcttgggcagcttacactctctgtgactctgcccacctataaaatccatgatcattcctgtttttc
atgatggctttgaatattagtattcataaatgaagaaagaataccccctccaaaaagaaataaaactaaaggccaatgtatctctaAAGAATCTAGAGGC
TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTA
GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT
TGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATCTAGAGGCaaa
actccttagcaaagtagtagcaaatagcagtcagcaatatatacaaagaattatacaacataaccaaatgagtttattccagggatatacgattggcaca
atatttgataatcaaaaatgtaatatattaacagcccaaggaagaaaaaattcattatcatgtcaattgatacagaaaaagcatttgaaaattttaacac
ttgtttctgtttaaaaatctcagaaaaaaatagaaattcagagtaagtttctccccttcatgaagaccatctacaaaaatcctacagctaacattatgct
taatggtgaaaagctgaaggcttttgcactagattgggaacaagaaaagaaagacctctcttatcactcatttaacatagtat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
2213 chr2 213400192 213400483 RIP_Alu_chr2_213_01 0 + 238248|Ya5ACA796|pAlu2-213538608 TGTCAGTGGAGGTGTTGGAG CCTTTCCCATTTGCATCAGT SINE Alu Ya5 cttccataacatcctggcaatagtggcaggcagggagatgttcatattactgagcacggttttgacttgatattagaatatatatttatttgctcagctt
ttttttttctcatccctaataaagtttaaattaaattgaagattgttgagtttgaaaatacaggaaggagagactgtcatggattacccattgatagagg
aatgtccctgaaaggtgacagcaccagaagagttctttctcatgaataaaagaaaaggaaacatggtagttgagatgtaaatatgtctgtcagtggaggt
gttggagaaagggacgagaatcttataaaggaatcccagctgataacctctctcttcagtgaagtaggaaataagaatgtgtgtcAAAATAGCAAGGCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAGCA
AGGCCCagggcctcaaaagaatgaggaaggtcaataaggtctactgatgcaaatgggaaaggaagccgatttgagacattcaaacaggatttagagtgcc
accagatcaagtcttcatttagttaaccatttgataaatatattgagtccaacacagtatcaggcactatatttatttccagcatcacaaagacaaccag
gcatcaacttgttaaacatccccaggatttgaagtggaggagctgactgtgcaggatccacagtatccaaacatcccagctacctcactttctttcttct
agctctggtcagaaataaggctatggcaagtgacctttccttgctcagggcggcttcctatattttatgaaagttccatgccagggatttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison|Candidate screening NA 60 475 184 NA intergenic
2222 chr2 214600722 214601017 RIP_Alu_chr2_214_01 0 - 12563 NA NA SINE Alu Yc1 ggcagagtgagactctgtctcaaacaaaacaaaacaaaaacttgtttctattgaaaatgactttagttttgaaaatcaaatatattacaggtgccagatt
gatggtaatcactttttttttaaagaaatgtactgaagtgtttttatgagagggggtggaacaggaggactcaatagttcttacatcactaagtaggaag
tggaaagtgtagaagcaagaagacttggttggcttctcattctggctctgcataaatgtccccacatgatcttggacagtttatttaatatttacattta
ccatctctgaaacttactgtctttatttggaaatatggataataaattctggttgatatacttttaatgattgttttgtagatctagtAAAAGAATTCTT
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAACTACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AATTCTTacaaaagcaaatttttaattatttccacctttcaaatttgggattattttgtaaaaattctcttgttatctctagttaagacttttgttttgt
tttgtttgctgaaatgagttgttcctctcctagaaaatcttcagtaaaaagtaatagatttatatgatctgaagagaagtcagaatataagttcttatgt
agaatagtttatcactatttccgtaactagtggaataaaataaattactatcgttatattgtagtctcattgacctgtgtctatctattcaatagaacta
tttgaattcataaaaaggctattagtcacaatgttctgttaccatagaatatgtatgtattaatttcatgcagcagaattacatacaaccaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
2229 chr2 215597030 215597332 RIP_Alu_chr2_215_01 0 + Ya5ACA792 TTTGCTTGGAATCATTTCCC ATCCCATTACCCTTTCCCAG SINE Alu Ya5 ctttattttaccagccatgaagcataaagaatattataagtagttctctatttgttttttagtgaaaaaatttagcagtctcccatgtattcatataatt
aagttcagatttttttccattatgtcctttatgtaatcagatgatgatttcttagacatttgaccaagttttatctttcttttaattccgaaacatttca
gatccataaaaactgatgaaaataaattagattttacagtatactaaatgatggactatttaagaattacttaaactaatttttggaaaacaaattcttt
acattaaaaatatatttaaaaactaaaatagctgaactatttagattttataacttaccaaaaaaaacaaagtagaagagaaaagagtattAAACCTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACTCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACCTTTTaaaggaaatctttctttactgggaaacctacttaagaaggacagatgacactgggaaagggtaatgggatcttctgtaatgctgatgac
agcaatgaggtggtgatggggatagggatggaaatcccccatatggttaggaagctaagatgtgaaccaactgattttgaattaaaaattagaaccatct
tctgtaagacttaaacacaggaaaatcacaccaactcagcgtccttaattgcttttagtatctctgttctagttcatggtctttctttcactttcctgta
ttttcaatcttatggtcaggacaggtgcatgctgttttaattagcatattcacacctggaatgcaacaacttagaaattacctgcagtcacaaagaatgt
ct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 913 602 NA intron
2239 chr2 216918315 216918617 RIP_Alu_chr2_216_01 0 - 17889 NA NA SINE Alu Yc1 ataaggctattgtaaccaaaccagcatggtattggtatagaaacagacacatagaccaaagcaacagagtagagaatccagaaataaatccacatattta
cagctaaatgatttttgacaaaggcatcaagaacatacattgtggaaagaatactctcttcaataaacagtgctgagaaaattggatattttctcagtgc
agaaacatgaaacagtgcagaaaaatgaaaatggatcccaatctcttcccacatacaaaactcgagatgaattaaagacgtaaatgtaagacaccaaact
ataaaactactagacaagaaaaatacacaaattgggctcaacaaattaaaaagctatcttctgcattccatatcatctagtggttAGAAAGAAAGAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAGAAAGAAAGAaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagcttctgcatagcaaaggaaacaacagagtgaagagatg
acttaataaatactcaaggtgatggataccctaaatatcctgacttgatcattctacactctatgcatgtaacaaaacaagtgtaccccataaatacata
aaatatcatatcaattttaaaaaccaacaactttgcatagggcatgacgcatcacctctgtgaactgatgagtccaagcatcttgccatgcatctgcttt
aagaacacatggcgctcccgtctccctctccctctcccgtctccctctccctctcccgtctccctctccctctcccgtctccctctccctctcccgtctc
cc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2251 chr2 218371664 218371962 RIP_Alu_chr2_218_01 0 + Ya5ACA804 GACCGTGCTTAAGACCCAAA CATTTCTCTGGGAGTTTGCC SINE Alu Ya5 aacaaaaatctccaggtattctatgatcagccaagtttagagaccactaacttctggcacaaactgaagaggggaggggtgggaagattcctaaaactgt
cctagaaatgctattatcatacaaatagaattggttaattagatacaagtattgtcattgacaaatacttcctaggagaaacagctagcacagggcaaac
ccagagaagaaagggcatgagacaggagggagctgaagaggaaggtcactgggtgccagagactcatttcaacaatcccacagttttacctggggccaga
ccgtgcttaagacccaaaaccagtttatgtcaggttgatgataggttaaaccaacacatctgttagccaattcaaactaattttttAAAAATCAGCACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGTGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAATCAGCACCAaaaactaattgagctcaagataaagcacacagatatggcaaactcccagagaaatgattttaaggaaggatagcaaatttcaaaatct
aactgaggcatggtgacccagcaggactgcagaggatcagggtacctccaaagttgtgaaaatcctgcagacaacaggctaaagaaaactgattccaaga
ttgctgatggaaccaagcagggaggggttgagactgcttttgtctgcaataaaattttccactggtcacacatttcttttttcttttctgagtttcaggg
tgggtgagcagatggctggagcattggaagagagtgagttcaggaatctcactaagaagggcaaagtaagatgaaagttttggggtcaggattgagac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 470 158 NA intergenic
2291 chr2 223622872 223623180 RIP_Alu_chr2_223_01 0 + 238378 NA NA SINE Alu Yb8 gataccagaaataaacctgttcagaagaacatacttgaagccctgctaatggagtccattaagtagaagttaattgtttttctttctttctttttttgag
atgtagtcttgctctgtcgcccaggctggagtgcagtggcaccatctcagctcactgcaacctctgtctcctgggttcacgcaattctcctgcctcagcc
tcctgagtagctgggattacaggtgtgcaccaccacgcccagctagttttcgtatttttagtagagtcggggtttcaccatgttggccaggctggtctcg
aactcctgacctcaagtgatgtgcccgcctcggcctcccgaagtgctgggattacagacatgagccactggacctggcctgtttttcttttAAAAGCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGCATGtatttagcagtacaaaaattagggcctaattttaatatgtgcttttaatttcagcataaccattaatgcttaattttgcaaag
ttttaaataatttgatagcaaattacttagagaatggccagtatttatatatgtattaaatgttactaatattattactcattgttttcccctctccacc
tttctttgttttgcagatcgtaaaaaggaccttgtaaaactacaggcaggggaatatgtttctcttgggaaagtagaggcagctttgaagaatcttccac
tagtagataacatttgtgcatatgcaaacaggtaagaacgtggaattcatactacttttacttaaaatatttgatgtccatagacatttcctacctgtat
ggaccttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
2296 chr2 224298619 224298839 RIP_Alu_chr2_224_01 0 + Yb8AC726 TTGACACTGAAGAAAGGACACAG CTGTCGGAAAAGGTCAAGTGTAT SINE Alu Yb8 gggctcccacggattcaccagatgacttttcacagttcacttagcctttgtaggaattttggagtgctttctatatcggcaaaatgaatatatcacttct
ggaggtagggcacttgcatatataatatgatgaggggagctgagaaaagcctccttaacccagaactttctcccccaaatccagccagcctgtctgtatt
ctacatcataggtggtttggggttttttagaatttttggtacagggtccttaggagctccattgtaagggataattcattaatcagttattacctcctta
gcaggaattagcgcacaaatcaaatcatctcactactttgacactgaagaaaggacacaggccctgtatactacaggggcatgattAAAAGCATGTATTG
TCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG
GCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGT
CTCAAAAAAAAAAAAAAAAAAAAAGCATGTATTGgagtcgtgattctcaaagggtggtcccaggttagcaatatcatcaccactcagcaatctgttagca
acacacattttcagaccccacccagaagggttcatttagcataaaaccaaatataaatgtaaatacacttgaccttttccgacagccttcctagagactg
gctcaccagcccattatttgctcccgatatggaaacgctactgatgtttgcaaagaacatctcttcctggctttatagaggtttcaaattgattcttgca
taaatacagatgggtttatctgagtacaaattagctcatagattgctatgattggaaagatatataaaatgtcatccactctaacctggctcattgcttg
catctgctctgtcaaattcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 448 214 NA intergenic
2315 chr2 226843078 226843311 RIP_Alu_chr2_226_01 0 - 570 NA NA SINE Alu Ya5a2 gagtacactcattaaagaaacaaatattcagatgtatatacatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatacacacaca
catgtaaaatagaacggaattttgggacaaaccaagaaatataataaatatgcacaaagagctaagagaaaatagacagatacatgtgtgtatgtgtgtg
taatctccctctgactttattaggaataaaatataatacttaaaacaaagaacacatagaagggataaacaccaggatggatacagctaaagaaaaagct
gggaattagacagctgaaaagtcacatggaaaaactccacaggaacagaaactgatgaagaaaaataaaataataagccaggctAGAAGATGGAGAAAGA
GACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTGCTTGGGAGG
CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGATGGAGAAAGAatcaacatatagtaatgggagtctcagaagacaaggaaaaaaacagaaaag
agaacatgtctttagaaataatgaatatacagtttaaaaatttcaaaaagattacataccttgcattaaaaaggctcttagagtatcaatttggagagaa
ttaaaaacctacatcttgacatattgcagcaatattttaaaacattggagggaaatatattattctaaaagtctctatagaggaagaataaatcatggca
aaataataatcagattgatgccaaatttttcagtaccaatgctggatataaaatagaaacatagaaatatttttaaattatgaagaaaaataaattctac
cacacttttatttcaagccaaattattatttaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2348 chr2 231150814 231151142 RIP_Alu_chr2_231_02 0 - Yb8JW659|14218|Yb8AC1527 GTGGAAACAGTTAATGGGAAGTG AAGTGGGTTTTGAATGATCACG SINE Alu Yb8 accagtcgcacagaacaggaattaatttggattccatggttgtgtagctctgcctctgggcctaattgtaataaatgaagaattttcatttgtgtcccca
gtgaacctccttcactatcattaataactccccctctctgcaatttcactgctggggctagaccttcaccccacctccgtgtttttccttttgctcaact
ctgtcccttcctttgtgcctctcttggctctgttttgttttttacctttccctttacctactcgtctcattctttgatggttaatattttgctttttaaa
aaaaataaaaattataattgcagtataagacacatgaataaaagtgggttttgaatgatcacgaaggaagtaaatcactttgatcAAGAAACAGATTACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAGATTACCaataccccagacacctcctggtgacacttcccattaactgtttccactaacttgctc
aaagacaactaccattgaggtttccaacactaaggttaattttgcttgttgtgtaatttataaaaatggaataatctcttttctctccactctttctttc
tccctttacctctctctcaatatatatagatctcccaaaagaagccaaatcccccaaaattgtatggatattttactcaacatgcttgtgaaagtcatct
gtattcgttttgtataattattttcactactagatagtattccattatagaaataagccatgaattatttattcatttgtacaatttcaagcatttggct
tctatgaataatgctgccttgagcattc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 60 449 106 NA intron
2353 chr2 231821700 231822005 RIP_Alu_chr2_231_01 0 + Ya5ACA868 TGCAGGAGTTTTGCTTTCAG TCAATGTTTCAGCAGGCAAC SINE Alu Ya5 gttgaagaaaccagttatctctgttttgtttcccatggtatgaattttgctgagtgcatctttacatgtagtttaatgtgttgtttggtccttcacattt
cctgtaaattgacagttgaatctacaagcttgatcacattcacattttttttagggtggtggggctggcggtacacacagttatttccattttcatgatg
ttagcagtcgttgataatcatgctgcgatctattcattatatgttacaaaatggtgatataattttatcatttattaactgttcctttaaaagtttatat
catatatctctgtgtgtatatataaagattaatgtgcaggagttttgctttcagtgaatgtttgcattccaatcattgcttAGAAAGTTTTTTTGCCCTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGAAAGTTTTTTTGCCCTTttagagttgcctgctgaaacattgaaataaacatataagaatattatggttttactgtactcttgaaaagattgaa
tgtctaaactaatttaataaagaatttctcatttcttgtcttaacacttgttttttctaaagaatgtgtcagagttggaactgttgttagattgagacac
tgtcaggttttttatatgcttttgagtttatagccttcacagcctatttcagtctttattgcaattaactaggtaaagttctgcattaggctcctggtat
ttatgttctcaggcaaaattttttctaaacctcatggaattgttagtgccttttgggaagcaaaacttaagtctaacttctatcccctttcagaaaactt
ttcta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 415 91 NA intron
2366 chr2 233493891 233494181 RIP_Alu_chr2_233_01 0 - Yb8AC1094 CTGGTGAAGGAAGAGACAGTGA TCAATGAGTGTCCGTTTGCT SINE Alu Yb8 gtaaatctacatgtacagaatgcatgctgaaaactacgcaacactgatgaaagaaatcaaagatctaacaacacagatagacataccaagttcatgaact
aaaagactaacatggtaaagacatcaagtcttctcaaactgatagagaggtttaacataattcctatcagaatctcagcaagatttttagtaaatacgga
caaaattatcctaaaaatttttatggaaaggcgaaggaaatacaaagctaaaaaaaaatttttttaaaagaagattaaactgggaagaatcagtctaccc
aatttcaagacttattatacagctacagtaatcaagattgtacagtactggtgaaggaagagacagtgatctatgggacaaaattAAGAAGCAGAAATAG
GCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTT
GCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAAGCAGA
AATAGaaacagacccacaaagaaatagacccacacaaatatgcttaactaaattttgacaaaggtgaaagaaaacaatttaagagagaaaagacattctt
ggtcccgaagcaaacggacactcattgagaaaacaacaacaaaaaacaactagcttatatgaaaattaatttaaaatggaccatgaacttaaatgtaaat
tataaaaactataaaatttttccacacacacacaaaaaaaaccattggcatctaaagctaggcaaagtgttcttgttaaacttaatacaaaaaagaacaa
cctataaaagaaaaacatttatctattggattaatcaaaatttacacctttttgctctgtgaaagactctattaagagaatgaaatgaaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 481 176 NA intron
2384 chr2 235876683 235877000 RIP_Alu_chr2_235_01 0 + pAlu2-236110861 NA NA SINE Alu Yb7 cggaagtgaagtacagaaatagtgggactgattattgctcagcatttgtcttatttgaacacagtttgaacactcagcagtctatgagtggttgaagcat
ggccgctgtgattggccaatactcagctattgttacaggtgcatactactaagttaggtcttcaatgttgtcggcagggacacaacaaaaaaagaaaatt
gcaggccaatatccctgatgaacatcgatgtgaaaattctcaataaaatactggcaaaccgaatccagcagcacatcaaaaagctaatccaccacaatca
aattgtcttcatccctgggatgcaaggctggttcaacatatgcaaatcaataaatgtaatccatcacgtaaacagaaccactgacaaaAACCACATGATT
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACCACATGATTatctcaataggtgcagaaaaggccttcgacaaaattcaacacctcttcatgctaaaaactctcaataaact
aggtattgatggagcatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatggacaaaagctggaagcattccctttg
aaaaccggcacaagacaaggatgccctgtctcaccactcctattcaacatagtatttgacgttctggccagggcaatcaggcaagagaaggaaataaagc
gtattcaaataggaagagaggaagtcaaattgtctctgtttgcagatgacatgattgtatatttagaaaatcccatcgtctcagcccaaaatctccttaa
gctgataagcaacttca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2421 chr2 240678944 240679251 RIP_Alu_chr2_240_01 0 + Ya5ACA825|238271 GAAGACAGGGTTGAAGAATGC AGGAGCTGATGTCGTAGCGT SINE Alu Ya5 gaggcctcccctaatcttcctacccagcctctccccacagcctccttcctcagagcagccaccactcacttggggcaagacattcctgtttccacatcga
gtcttcatccctctactaaaacacaggcttccctccctgtggcgcccttagctcccagaatgggtctggcacacagcagacatgcactaaatatttaatg
aatacgttaacccagttccaatttgccccaagaatactgagatgggagcaagctgcactttttttttctaaatgggaaataggttactatagcaccaaaa
aaagcaaggctttatttaacaagtaaaatgtttctttttcattttaagaaatgagtagtcagaagacagggttgaagaatgctttAAAAAGAACGTGGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAACGTGGAGtaagcctggatgtcagtgtgaagtccacgctacgacatcagctcctggattggctcctggtaaagaacctcaaaccag
aaacagcagaccacattgttttcttaggagtaacactaaccaagatcagggtttacgttcatataagaaaaaaagaagcactaataaaatgttttcaact
ttttcaaagcaagacaataactccaccaccgtacaactgtgtagatacgtgtcatggacacacactgcatccgtggagacctgaaggagcataggcagcg
gctcctagctcagctctgagaagaagcctgtgagccggccactcccagtgaaaaccacattcttgttctcacggctcagaccccatgaagccaaccctag
tggcggc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 55 407 85 NA intron
603 chr20 2462991 2463089 RIP_Alu_chr20_002_01 0 + 19981 NA NA SINE Alu Y? gttcagtatctgacttccaaacttggatttttgaattccttagaaataattgtggaaagcagggtttgttgtgagagagaagaaatctgccaattcctag
atcactccttcagacaccaagggctaaacccagccaccagacagcaaaaacacatcagcccctgaggacaagggtctctgtttcatttgctgatgaatcc
ccagagccgagaactgactctgaccccagtgggtgctcatttttatctgtgaggagaaaagtggagttatcgactgtgtggacagtcaggtacaagggaa
tttgatagtcctatctggagggaatttctctccggagatgaaggtgttgtagaaagcctttctcctctggcaacagagaacaacAAGAGCAGGGTAAAGG
CAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
GAGCAGGGTAAAGGgctgctgggggtcctcactcatcaggggagagcgcttggggcacccccagcagaaaccttactcaccagtcctctgggccacgctg
tcctgtggctgcacagctgcccgtgctgcttctcacatggaccggggtcctgcactggcatggccctggtggggagagggatttgcggctgcagtcctgc
agtatggatgccagagaatgcaactgagatcctcccactgccctcatgccccggggactggggcggccctgcaggaaccagttgggtcggagatcaaggt
gtgggacaaagagaaaagcttcaaagcttgagatgaaccgttgcacgtgcattttagaggtagctcctttgccccttccctcgccaagcttgcatgag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA promoter
606 chr20 2812016 2812321 RIP_Alu_chr20_002_02 0 + pAlu20-2811916 NA NA SINE Alu Y aacactttttttttttttttttttttttgagacaggttctcactctgtatgtagcccaggctggagcgcagtggcatgatcatggctcattgcagccttg
acctcctgggctcgggtgatcctcccacctcagcctcctgagtagctgggactacaggcatgcaccaccatgcccagctaattttgcaaccagtaggaat
aatgcaaatagtacaaaatctgaaaaatacctaaatctgaaacacttctggtcccaagcatttcagataaggaatactcaacctgaacctagcaaatatc
atttgaaaaaataatatcttaatctgtctcttcaagtaaaagtattatttaaatagtgagtgaaaaaggaactacttcttttcttagAAAGAAATGTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAtgcaatggtagagcgttttcctcgttggaattttttttacatgtaatcattataagctataacttacatattataaaattctcctttt
taaaatgtacagttctgtggttttttgtatatgcatagagttgtgcagcttttgccactgtctagtttaagaacatttcatcaccccaaaagagaccctg
cacccattagcctcacttcccattctctcctccctccagtccctggcaactactaatcttcctgtttctttggatttgcctattctggacatttcatata
aatgaaatcatacaatatgtgaccttttgtagctggcttcttttacttagcataatgtttctggggttcattcatgttgtatcatgtatcagtacttca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
629 chr20 5891000 5891316 RIP_Alu_chr20_005_01 0 - Yb8NBC93|pAlu20-5890901 AAGTGAGTCCCAGGGCCTTCT CACACAGGCACTTGTTTGGT SINE Alu Yb8 ttgatccttctcacttactgttcgtatcctgctatgggtatgcaaggtgctttgcttgcctcccacatgaagcacttattgcttcctctgtgcccatgcc
acctctcgctccttcaacaaccctctcattctgtcccacatgcccaatgccaatcctctccttttcaaaaggctttccagagttttctttaatccccagc
tttctcatctaggctccttttgcactttctgtagagtgtaatacttattatgccacacaggcacttgtttggtgtttggatctcaagaagcatttataaa
ttcagactgtggcagactgtatttgccaaatatgattgcaacaatatttatcttcaagactttttagaaccttgctactcctccattAAGAAATGAAGGC
CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAAGGTGA
AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATGAAGGCtaattccttctcctggaatttgagaaggcctgggactcactttgttaccaacagaatgtgacacagtgatg
ttgcacgacttctgagactagctcacaaaaggcaaggccatttctgcctaccaactgcacttcttgacctgaacctgtcagcagccatataagcagactg
agtgcctgagctgctatactgtgtgcaagaagcccaaactagcccacacagccacatggagaagaagatgcctggccagcccccagccaccttgctgtac
tccagccaccatctgactacaactccatgagaggcctggagccagaactagccagttgagtagttcttccaaactcctgatccacagatatcatgagaac
taataaaatgattggc UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening|Genome comparison NA 60 601 274 NA intron
631 chr20 6098953 6099279 RIP_Alu_chr20_006_01 0 + Ya5_550 GCAGACATTTGCAGAGAATCC CACCAGGGTTCCACAAAGAT SINE Alu Ya5 gatgttattgtatgtggtccgggcgtgggatttgggatgctggacaaatggttattatgacttacttccaaaggccctctttgcttatttgcttcaccag
ctttgaatttcttggcaaatcctaatggaaactcacctatgtaatgggcttgaatttgactacacaaactcagatgtgcaagacatgcatgtcatgttat
ttttcaagaataaatttaaatctgtatctgagtcctaatctttctgagctgctgggatagtacatctcattcattgttggagtttcctgtctgcccccat
cccaagtcaggtataagcctcagagcagacatttgcagagaatcccatggtatccattaacaagctcatggtttaagtgcacattatcttttaaGAGTGG
ACATCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTA
AAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAGTGGacatcctttctgtggaaatgagaatctttgtggaaccctggtgctttggtccagttgtactgggggca
tcaagtagtcacttctcctgagatcctgcctctagcttgaggtgtggcaaagaaacaccaactaatttctcattccaaagcttggacaacctcactcctt
ttctctctgcttctgctatactgtatcaaaggcacctgtttctcccccatttctccagtaacctcaggcttttaaaaacagagggcaaacagggagatgt
tcttatatacctttttgtgttgcgtccagaaaatacatcctatctgattcttctataaagaaaacacagtatctaaatacgttttcctagcacagttatt
tctatgtttagttcctcttacaggat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 451 119 NA intron
640 chr20 7222350 7222649 RIP_Alu_chr20_007_01 0 - 2716|Ya5ac2706 TCAACTTGGCTTATGTCTGAAAA TACCAAAAGCATTGGCATCA SINE Alu Ya5 aaacatcagaagattgctcttagggaacttcctgggatgatggtaattttctctaccttgatagaggtttgggttacacaggtctatgtatttaaaatat
gcttactattccattccacttcaaaagacatattgaaatgtagttgataatatgcttgctaaagtgtttaggggaaagcatcctgacatctgcaatttac
tttaaaatgtacaaaaaactaagatgaagtatagaaaaatggagggatcgataaatggataggtttgtgaaaaagcaatatagaaaaatgttcatgttag
agtctaggtagttgatatgcaagtgtttactgtaaaatttattcaacttggcttatgtctgaaaatagttgtataaaatgttggtgAAAAATGTATTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATGTATTGTCattcctttttttaaaaaaaaataaagatccatttgtattaataatcattctctttttatgatgccaatgcttttggtaaagttaggg
gcatcaaaatcattaatagatgtcttagtctgttcaatcttctgtagcagaatactatagtctaggtggcttaaataatagaaatttatttctcacagat
ctggaagctgaaaaatccaagatcaaggtgctgtcacatacggtgactggtgagggctgcttgctgatttatagatggcactttcttgctataaactcac
ttggagggaagaatgaggcaattctctagagcctcctttataagtgcactaatctgattcatgagagctgagccttcatgacctaatcaccttccaaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 449 136 NA intergenic
657 chr20 9553206 9553207 RIP_Alu_chr20_009_01 0 + Ya5-MLS20 AGGGTCATGGTATGTCTTGTAGTC GTTTGAGATCGCTGTGACTTGT SINE Alu Ya5 cttaaacatacttatctcaaaatttggcagaaagagtttttgctataaaaataagtaaggcataggagaactgtatcagaaaatgcaacttttgtccagt
cctatagaaattttagcctgtcttggttatcaatatctcagtcactgacatactcagtttcacatctcagcaagcactgacatcatgcctagcccatgac
gggtattcaataatgctgaacaaattgaatgttgaatacctaaaaaaggtatggatatggtgaataccttagaaaagagtagaatttgtacacttggaag
gtacttctagaaagatttttatgccatgtccaggatggggtagaaatattataaaggtaacagaatttcttccaacttatctgttttcttaAAATTAAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAA
AAAAAAAAGAAATTAAGGttcatgttttctccttacctctctgtcttataatgtgctagtgttcccattatacccttgacaagtcacagcgatctcaaac
acagctctgtgctttgtggaaaggccctggctctggagtctcctgagctgggtggagcacgcctcagctctgctatttgagagttgtgtgactgttggtg
agtcctttgggttctctgagcctcagatcacccagtctgtaaaagaaggataatacctacctcacaggggcttagatggggtaatgtgtgttcaaatatg
ttactaactatgagccccagtcctacatcccaaagtgagttcgcatctcacagaaacaaacaaacaaattatgaatctgttataagcaattaagtaagga
ttcttcaca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
672 chr20 11465278 11465588 RIP_Alu_chr20_011_01 0 + 79712 CATCCCTATATTACCCACTCCAGAGC CACTCACTATCTATCGTCATCCAGC SINE Alu Sx agagctgtgatcataaaagctaactaaatactgccatgaaacagctaggatttggatgcagaaacagagtgccagagaaacactaaacaaaatgacaaac
cacagttaggatctcaggaattgagaagatggacctgtctggcagctgaaaacattgatgtccatcattaatgcagagtcaggacttcccagagacgaaa
ttcttctgcaggaaaaagggtgcaaccatcagcctctgcccttcctccatgtgagatctctttctcagtctccagggaagcaatgtccttttgcttccta
ctaaatacctggacctctccatccctatattacccactccagagcaatttgcacagtgctccacactttcccctaattccttctcttCAAATTCTGTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACAT
AGTGAAACCCCGTCTCTACTAAAATACAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAATCTCAGCTACTTGGGAGCCTGAGGCAGGAGAATCGCTT
GAACCCAGGAGGCGGAGGTTGCAGTGACCCAAGATCGCGCCATTGCACTCCAGCCTGGCAACAGAGCGAGACTGCCTCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACAAATTCTGTCTTacgtgcaaacttccaggatttagctgtccgctggatgacgatagatagtgagtggattaataaaagctatactccta
gcaaaatgttttgttagatctcagtagcaatgcctcaactgtacaaatgtgcagactttcataattgcccttaagtattcactaatcctggaaatttcaa
gcaaagtagctatctctctgtgtggagaaaagatgttaagttatttgaggttttcagcatgctgaagtttacattataaaaggaattgctaattccacct
acacccttgaaggagggccatccattaacaagagaaagcaataccttagggcaaagtttctgcctatctgcaagggaatataccaattactaagacaact
ttatccccta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
695 chr20 14477081 14477382 RIP_Alu_chr20_014_01 0 + Ya5_5672|pAlu20-14476982|2845 TTCAATCATTTTCACCTTTTGC GTGAATTGCCAGCATTCTAATC SINE Alu Ya5 aattaaagtgatggtaaaatagactacacctcttgataagaggagaggcaaagccacgtcgcaaaggggcttgtgtaaaaaattggaggaattattgggg
ccatatttggagacttggccccttcacattttgtatctgactttctcataagacttttatttcttcagagcaagggctatgccttcttcacgttttcaga
atcagagtatgaaaaatatttgctgtttcttgagtaaatgattactccatgatagttttccctctaccccaactgccaattataaactcagatttacatt
cagaatactggtgtgaagcatttctactatatctttttttttcaatcattttcaccttttgcatttatcttataaatctaacactataAAATACATTATC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTTGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAATACATTATCttagttttttttttttagattagaatgctggcaattcactgggaagtgatccctggaagtattaaatgaacagaggagtgggagaag
taaaaaagggaatggatgaggctaaaaaaagggtgacaagcaaattaacctggagcaactggggttgtttctactggggaactctgcacgtgcctcggag
ctatcccacctgaagggtgagagcactggaggacatgaatttcccagaagttatggtgctccatgattacaggcaaagcaagcccactctagtggccaga
gagagccctcaggcaaagagacacatgttctagaagtcataccaacagcactgaatggtccaagtcatggagatctgggcagtgcaccagcaatgactgc
c UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 60 412 100 NA intergenic
698 chr20 14928987 14929305 RIP_Alu_chr20_014_02 0 + Yb8NBC435|Yb9NBC53 TGAATGATTGGGACTGGGTA TGGCTGGATGAACTTTCACA SINE Alu Yb8 tttaaagatataaaagcaatactgtatattgttcagggctatatatctgtacaaactttaagcaattggctgaagggatgcatactaaattcatcattgc
agttactcttggaaagtggaatttgactgggaaccaagaggacttaattttatctgtaatggtttctttcagatgaaaaaataaaaggcttaaagccttg
aagggcaaatatcaactgaattcatgatgatgattgggatagaagaatacttttctacattaaattttttttattttcctcagaaagcaaaacaaaacac
aaacaaacaaataaaatctattatgaatgattgggactgggtataaatgaggtgtttggaattctggtgatgttctataacttcatcAAGAGGTAGAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAGGTAGAAACatggaaatgttcattttgtgaaagttcatccagccatacaaggtaggattggtccactttgttgtatgt
gtgttatccttaggtggaaatttctggagcaaatatggcaaaataagaaaatttgacgtagtctgacataaaacttgacatacacagattattctttatg
cttttctaaaagcttgtgatattttaataacttcaaaagagatggttcattaataaaaatattttgattttggctgtattttgattgcaaatctgtgtac
tgcaaaacaatctcattacttgctttttctgtaccataccatgattttcacttcatcacaccttagcaaaagctgttggggaatgagaagacatgaatgg
tctggtaaatgctgttga UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 55 444 113 NA intergenic
715 chr20 17051450 17051774 RIP_Alu_chr20_017_01 0 - pAlu20-17051362 NA NA SINE Alu Ya5 ggctgcagtgagctatggtcacaccactgcactgtagcctaggtgacaaagtgagacttgtctatttaaagaaagagagatgaagaatcttggaaaaagg
aatcaatgaaaatggaataaaatatttcatttttattattctaaaatgtaactgtataatttaataatagtaagaatgtactgggtaattataacataga
ataaaagaaattaaatgacagcaacatcacaagggatgggagggagaaattgggaatattttttcaatgtacctgcaccactcataaagcagaagcatgt
aatttgaaggtggaatcagattagctaaaaatgtatattgtaagctttagggcaaccacagtttttttttttttttttttttttaAAGAAGTGAATAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTGAATAAGAGgaggagataaaatggaacaatacagagacttaattaaaacaacggaaagcataaaacaac
tacaaacatggttgatgttaaagcaaatatatgaataatcccttggaatgagtagtctaaatataccagctaaaagacagagattgtcagataaaaatgc
aagacccaagtatatgttgtttacataaaattcactttaaatataaagactccgataagctaaaattaaagaaatggacaatggagaaagagaaaccata
ctaatcgaaagaaaactggaatgaaaatattaacttcagccaaagcagacttcaaaacaaggagaattgtcagagataaagagcagcactgggtaattat
gaatgggtaaatttttgaagaagat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
730 chr20 19009430 19009729 RIP_Alu_chr20_019_01 0 - Ya5ac2715 TGCTGTCTGAGTGAGATGGG ATGAACCTTCGAAATGCCTG SINE Alu Ya5 caccaaaagttccagatgagagagaaaggcagcccagacccaggagtaagagggggtcttgagaaatgattggattatggatttattttgtgggatagaa
aaatgataaaggagtcaaaatttgactccaaggtttggtgtatttgctaatgaaaagatgacattgccatttactgagccagggattcctgcagaaagag
agttttgggggtaggggagatcacaagtttggtttcagacattgttattgactaaatatttacattcccttcaaaatttatatgttgaaacataatcccc
catgtgatagtatttggaggtgaggcctttcagaggtgattgggctatgaggtcggagctctcatgaatgagatcagtgccctcatAAAAGAGGCCCTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAGAGGCCCTGGagagctccctcagccatgtaaagatacggcaagaaggcaccagctatgaacaaggaaggggcccctcaccagacaccaaatttacca
gcaccttgatcttcaacttcccagcctccagaactgtgagaaataaatttctgttgcttataagccacccaggctatggtatttttttacagaagcctga
acataatgagacaaagatgtctctgctttgagatgattatttaacatccaagttgggatgtctagcaggtatttggatattaagcggcatttagtgagag
gtccaggcatttcgaaggttcattttatgtgcaggaggcacatgtgagcagataaacaacacagagcttctctttgttgcaacactgggttcaaaccag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 1180 867 NA intergenic
739 chr20 20223290 20223614 RIP_Alu_chr20_020_01 0 + Yb8NBC283 TGCGGACAAAACTTACAGAGG TGTGGCCTTAAATGTCATCCT SINE Alu Yb8 tgcagcaagagttctgggcttcactgggttatcctgttctgtcagcgactgtgaataggagtggcctgcactacaagggtaatttgtgtctgagaaaccc
ctgtttgagtgaattgtatttaacatgaatacaacatattttgatgcactctcagttcccagatggacccctccagtgatgctaatgtggtgccaaatct
ccttcaaatggacactgctccttccaaagttaagatcagccatcagtgcaacctcctcatcgctttctctagtgtagctgcttctggactctaagccctc
atttctgtaaggccctgtatgccaggattatgcggacaaaacttacagaggaggccaaaatatgataatgcagtctttacgtttaaaAATAATACCAAAA
GGTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAATAAT
AATAATAATAATAATAATAATAATAATAATACCAAAAaatgcaacaagtccataacaaaaaaaatcactaaaagtgatgctgatgacagactctcaagga
acaggatgacatttaaggccacaaaacgctcagactctcactgctctcagcctgcagcctgcagggctcctcaaggacttgacaagtcaccaccaactaa
gtgactgtgaccctcgtcttgaggtgcacagcctcggccacgtacatggaatccaagtcagccctcctaaacacaaagaagtccttgtaagctgaaggtg
ggggatttagtgagactcttggcaaagtcaagatttgttaaccacatgggtggatctcaaggtgtgcccccttgacacctgggctccctttcttaatcac
ttccaacaatgaaacctaaaagga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 493 156 NA intron
757 chr20 22603337 22603650 RIP_Alu_chr20_022_01 0 + 15678 NA NA SINE Alu Yb3a2 actggtttctttatgctgtcaccatcatatcatttcatccagtaaatgttttgctgtgtaccactaaaatataagaagtcatcttaaaaaatataatcat
atcgactggataaagaaaatgtggtacaaatacaccatggaataccatgcagccataaaaaaagaacaaaatcatgtcctctgcagcaatttggatgcag
ctggaggcccttatcctaagtaaattaaggcaggaacagaaagccagtagttctcatttctaagtggaaactaaacattgggtactcatggacataaaga
agcaacaatagacactgggcactgctagaggtgaggggtaggcagggggtcaaaattgaaaaagcaactattagataccacgctcAATATCCAGGAAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATATCCAGGAAATGggattatttgtaccccaacctcagcatcacgcaatatacccaggtaacaaatctgcacatgtaccccctgaa
tgtaaaataaaagttgaaaaaaatacaatcttaatactattactgtatgtaaaataatgagcaacaatttcctcagtatcatcaaatatccagtttatgt
ttatatttccaattgtctcataaatatcataatctttttttagcggtttctttaaattaggagctaaattacctattgcagtgagttgttttcaatctcc
tttaactggcaggtgtcctccccaactctctccctttctttctctttgcctcacactccactgccctgacctccttttctccctatctccccgtctccat
tctttgcaactca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
769 chr20 24217610 24217829 RIP_Alu_chr20_024_01 0 - Ya5NBC335 TGGGTACTTTGGCCTTAGAGAA TTCACAGCATTAGAGAGAGTTGATG SINE Alu Ya5 taagttcctttaaaagacattccaggcatccagctagccctgagaagtaaacgagtgacttactaagcaagaaggtaatcatagctaaaaaccatagcca
aggaagtcagtcatgagatgttgggtttcctaaaatttcatgctttgtgtttatttcataaaccgtagtcaaaatttaggggcctatgatctaaatgaaa
gtgaaaacctgaaccaaataaagtgactgattctttgtatctgagcatactgaatcatgcctataaggtaagtttagaaagtaaatactgtaagagatgt
ggagagcactccaaataaataaataaataaacaaaactaaaaccttgtttactgggtactttggccttagagaaaaagatgactatGAAAATACAGGATA
CCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAAGGCT
GAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCA
AAAAAAAAAAAAAAAAAAAGAAAATACAGGATAaaaatgtcattcacaattattcatccagaaaagatttaattccaatctaaactatcatcaactctct
ctaatgctgtgaaacagagtcaataactgcagtttttctttgttttttttttttgtttttttttcaacttttattttaagttcaggggtatatgtgcagt
atgtgcaggcttgttcataggtaaatgtgtgccgtggtggtttgctgcacagatcatcccatcaactaaatattaagcatagcagccattagctattctt
cttgatgctctccctcgctcttcacacaacaggcctcagtgtgtgttgttccccacactgtgtccatgcgttctcatcattcagctcctacctataagtg
aaaacacgtggtgtttggt UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 0 0 0 NA intergenic
783 chr20 26009338 26009645 RIP_Alu_chr20_026_01 0 + Yb8NBC523 CGAATTGCCAGTGGTTAAAA ACCTTCTGCACGTCTCCAAC SINE Alu Yb8 gtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccggg
aggcggagcttgcagtgagccgagatcacgccactgccctccagcctgggcgacagagcaagactccgtctcaaaaaaaaaaaattattcacatctaatt
atctcaggagacatcaacacagcaatgttgaaaatttcccattaattgttaatccatggagaaaaactggacaattattttttaaaatatgaaaagcttc
atataatacaaattatactcccacatgtgattcaatttctattaatggcagagaagttaataattacgaattgccagtggttaaaaAAAATAAATCATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCCTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGATTCCGTCTCAAAAAAAAAAAA
AATAAATAAAATAAATCATTCatcgttggagacgtgcagaaggtttaaaagaggtaagaattagtttttgggtttggggcgttttacgctttccaaaagg
ttttgctctttttttttgctcatggctttctctctctctctctctttctttctgatttcagtttcttttgatttctcctgcttagaaatggtgagagaac
tttggatgtggaacgtggaggaggaggaacacgaagtggggatctccacttggggtggtcagcactgcgggtgcccagcaaagtcactgcctggtccaca
tcccggaggggtctctgcgcctcagtcggcatcgcagctgatggtgaaacttttggtgtggcagaagagtgtccacaaacttcggaaggtatccgctaca
tcctcca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 0 0 0 NA intron
784 chr20 26097020 26097313 RIP_Alu_chr20_026_02 0 + Yc1NBC64 CAGATCCTGGTTCGTAGGAGGTG CAAGCTGTGTATTCTTGATACTGC SINE Alu Yc1 ttccacgtaacttagtaaaaatctctgtgaatagttccccaaattctgcatttttaacaagctccccgcttatggagctgtctccttgagtgcaggaagg
acaggctgttttactttataactgggacagcaagtacagatcctggttcgtaggaggtgcctagaaaatacatgataggtaattagttaaattgaattaa
taactataataagtagtaaaacttaataaatgctagtatttttttaattgtatatatctactactagatacaaactttgagtggtggtgttcatttacca
aagttttggtttttacacttttccaaaaaatgtcaattgctattctgtactctatacaatcagaaggaagtcagtttgagcacatAAAAATGACATAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATG
ACATAATAttctgcagtatcaagaatacacagcttgatacttcagatttatttttatctttgaaagatattaataaaataagtaatttataaaaacaaag
agattttaataactgaaacaaaaatactaattatgataagactaaacatgtaatgtagctgtaggttgaaataaacttgaaacactctagtgtctgcata
ccttttgctttccccaagaactatttctgcaaaatattcactagcctgcagagataacccacatagactatgttattaatatgcaatcttccttcctgaa
acagtttacatatgcagtatatagcatctagaccttgtaattgaattttcaaagtttgctgtggtttgggagctgcatatgggtcagtaatca UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 600 292 NA intergenic
816 chr20 30362896 30363195 RIP_Alu_chr20_030_01 0 + Ya5542|238005 TTTGGATTTCCAACAGCTCA GGGGGTACGTGGGTGTTACT SINE Alu Ya5 aaaaactggagattgagaagcgggccattgtagaggatcacagcttggttgcagaggagaagatgaggctgctgaaggagaaagagaaaaagatggagga
cctgcggcgggagaaggatgctgccgagatgctgggcgccaagatcaaggtaccatacccgtacccttccttaggcccttgccctgtcactgcttttgct
ttcatcaaacaacaacaaaaaacataaccatatgagggatgatgtctctcatcagttttggatttccaacagctcatgatatccagtactcagtaaacct
ctgtttaattgacatgaatatgattttttcacatttacaaaaatgaaaattgaattcataatgagaataattattatgtatgcacatagtataaAGAACA
GCAACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT
ACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGC
GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GAACAgcaataaaagtaacacccacgtacccccccacccagtgtaagaaatagaacaacatccatttttctttttttttttttttttgagatggagtttc
actctcgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaacgtctgccatccgggttcaagtgattctcttgtctcagcctccagagta
cctgggattacaggtgcctgccaccacgcccggctaagttttgtatttttagtagagatggggtttcactatgttggcctggctggtctcgaactcctga
cctcaggtaatctgcctgtctcagcctccccaagtgctgggattacagacgtgagccaccgtgtccggcttttttttttctttctttcttttttttttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 55 477 185 NA intron
827 chr20 31798800 31799110 RIP_Alu_chr20_031_01 0 + Ya5ac2698 GGTGTCATTTCTGCCATCACTAT CTAGCAAAACTCACAGTCAAGCA SINE Alu Ya5 tgaagttgagatgcctgccaacctttaaacggaggcagtgacaaagtagacaatgtagatttccaagtccggaggccagagcagaggacaaggctggagg
catctggggaagcttccagagtcctcagccgaaaacacggttctggagcaaagacaccctggatagggggctcatagaaagactaaaggatccctcataa
aggaggctgggcatatctcaggatgccaggtcaaggggtcagattttcaactggcttccttttctttccttatccctttagaacattatcttcattcatt
gtataggtgtcatttctgccatcactatgaaagcattcaccccagacccataggacatatagactgaaacaggcatcttctggcataaaACAGTCATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GGACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAACACAGTCATTTTtctcactgcttgactgtgagttttgctagtagaaaatattcccctcaccatctcttacctttttttttttttttttgag
acaaggtcttactgtcgctcaggctggccttggctcactgcaacctccatctgccaggttcaagtgattctcctgcctcagcctcctgagtagctgggac
tacagacacccgccaccatgcccagctaatttttgtatttttattggagatggggtttcactgttggccaggctggtctcgaactcctgacctcaagtga
tccgcctgtcttggcctcccaaagtgctggaattacaggcatgagccaccgtgccacaccagatattcttcttgacctaagatacttgtggacttcatgt
ggacatgtgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 447 127 NA intron
833 chr20 32579492 32579805 RIP_Alu_chr20_032_01 0 + Ya5ac2704|pAlu20-33784411 GGTTCCTGTCCTCCACTTCA TCCTCTCCTCCCAAGTCTCA SINE Alu Ya5 aaaagtctaatttattagagccaaagcaagacctgaggaatctgtgtgtttacgaagcaccccaggagattcttatgatcagacaggtttagaaaattct
gctttaggggatagattctaatcagaagaggctgcagtgagagccacaggcctaagattcacagcagttctgtctccttccgaaggccttcccttggaga
gactgcctcagatcatgttttcagggctgtggtccttaaacccaggggtcctgtgctaccctgggagtagaggtagaggctggggttcctgtcctccact
tcagtcagagcacacacactaagaaccatcagttcatgtttctacattggttttaatttggaaaggggtttggccaatttAAAAACTACCCTACTGGAGT
AGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACTACCCTACTGGAGTttacaaaaataacataaaccagtttatgtgagacttgggaggagaggagtccactgagacactgctg
ctgatagagcagcgtgaccagtgaaggaagaccaggaccatgcctgactcacctctgttcccgtgtcattcaccacaggccgcagagtcaggtcagtgaa
cgttaaatgaaccaaccacagtgggtgttgccatcagcccctttgatttggtaattcttgaggactgtgttgagaggaaataatcccaaaggaaaaaacc
tgaaatttttgcaagcatgttagatgccataatcagtagattaataattgttataatggctgggcgtggtgcatggttgctcacacctgttctcagcact
ttgggaggccatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 498 165 NA intron
849 chr20 34722362 34722677 RIP_Alu_chr20_034_01 0 - Yc1RG101 CCAGCCAAAGAGATTACCAAAA GTCCAGTCCATTTCTCAAAGAAG SINE Alu Yc1 attcttaattaaatgactccatgagagaaaaatgagaagagttcaactttggactggatagccaaagaccttgagatagaaaagagtgaggatataaaga
atggcaaacccactaaggaaagaggtgaaaagtgaggtaagggaggtgcccagggcttagtcattagaaccagttgtactcagaagccattaaaagatcc
cagcaggagaggacccacggtccagtccatttctcaaagaagtaaggtaacctactttcatgttatatagctagtcagtaggaagacttagattcagctt
gtagttttttaaagacacgtaacagattcagaaaattagataagtgaaatttttagatctgctcagaaatatcaaagtatatcatATAAATATATCTCCC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACACAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAATAAA
TAAATAAATAAATAAATAAATATATCTCCCactatgtattttggtaatctctttggctggctcagccttctccagactgagctgttgatcttgcaagatg
attctcataccgagctatttcgttttttttcctagcaactcataaaattattttcttctctttttttaaattttaggtcgaatgcaattcccgcctgaac
cctataaatacaactttgctaaaggtaatgtgccttcttccctcacttccaacccttatatgtgcttcagattaatcatattttctggaataattgctta
gaaaggagcaaagcttccctctctttggttatctcattctcttctttttctttgagacagagtcccgctgtgttgccctggctggagtgcagtggcgcca
tctcagctcactgca UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 541 235 NA intron
852 chr20 35042237 35042539 RIP_Alu_chr20_035_02 0 + pAlu20-36247152 NA NA SINE Alu Ya1 actctgttgcccaggccggagtgcagtggcactatcttggctcactgcaacctccgcctccgaggttcaaggaattctgagtcagcctgccgagtagctg
ggattataggtgtgcgacaccatgcccggctaatttttgtatttttagtaagatggggtttcaccatgttggccaggctggtctggaagtcctgacttca
agtgatccacacacctcagcctctcaaagtgctgggattacaggcgtgagccaccctgcctggccgcaagcatactttttataataattatatcttacat
gtattcagcattttctatgtgccaggctcaattctcataacactctataataaagccattatttcaattttacagatgaagaaatTAAAGCTCAAGAGTT
GGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACGACGTCAGCAGATCGAGACCATCCTGGGTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAACCGGGCGTGGTGGTGAGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCATGAGAATGGC
GTGAACCCAGGAGGCGGAGCTTGCAGTGATCCCAGATCACGCCACTGTACTCCAGCCTGGGCGACAGGCGAAACTCAGTCTCAAAATAAATAAATAAATA
AATAAAGCTCAAGAGTTtttaagtaacttgcccaagttcacattaggattcaaagccaagcgctgtggtttcacaggcccactttttttttttttttttt
gagacagcatttcactctggcacccaggctggtgtgcagtagtgcaatcatagctcattgcagcctcaacctcctgggctcaagtgatcctcccacctca
gcctcctgagtagctgggaccacaggcatgcaccgccacctgtctaattttattttttgtagagacagggtctccttatgtagcccaggctggtctccaa
actcctgggatcaacgaatcctcctacctcggattctcaaagtgctgggattacaggcgtgaaccattgcacacggcctacactgtgtcttttgataaca
gt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
853 chr20 35249037 35249335 RIP_Alu_chr20_035_01 0 + pAlu20-36453952|Ya5NBC148 ACAAGATGACAGATGTAAACCCAAC AAGGTGTTGTCAGACTAATCTATCG SINE Alu Ya5 agtcaggtcatttgtcctggaatattttccacattctgcctttgattaattgtatcttcatgatgtttttgaacatatttccctatcctttgtatccctg
taaactgatagttagctcttgaggctaaattatattcagggttggttttcttggtgaaaatatttcacaggtggtgctgtggacttcctattaatagata
cataatatctggttatttcacttttagtgatgatgaagttgtaaattaaggtgttgtcagactaatctatcgcttataaatagtatatagtagggatttg
ttttttcatccagtctgataatttctaccttttgattggggagtttattccatttatttttttattttgattctttttttatgtttAAGATCAATCATTT
GGCGGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACACCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GATCAATCATTTatgtttaattatattgttgggtttacatctgtcatcttgttatttgtttcctattggcttacctgtttttccctctcttttcctgtct
tatttttatattttattttgttttattttatttttttgagacagggtctcactcttgtcacccaggctggagtgcagtggtgtgatctctgctcactgtg
acctctgcctcccgggttcaagtgatcctcccatctcagcctcctaagtagctgggattacagacgcgcaccaccatgcctggctaattttttgtatttt
ttggtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatttgccctcctcggcctcccaaaatgctgggattac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening|Genome comparison NA 60 505 193 NA intron
864 chr20 36572684 36572983 RIP_Alu_chr20_036_01 0 + Ya5NBC45|3071|Ya5_5642 TAGGGTAAGGAATATGTGCTGCTTTAG GTCTCTGAACGACTATGTGAGCAG SINE Alu Ya5 aactcctggacttaagcaatccacccacttcagcctcccaaagtgctagggttacaagcatcgagccaccgcacccagcctggaatttgtctttagttca
catattactgcattaaattcatttgtttttatatcagattcacactcttattttaactttataatatttactgatatttagtaggtctaatgtctttttc
tctttttccttctcttagaatatttatctcttcttgcctgtttaacatttcagatcaattttagaaccaatttttcaagttacaaaacataagcaaacag
aaggaaaaacctcaacgaaaccttctggggtttggattgtgtattatttagggtaaggaatatgtgctgctttagcaaatgaacttGAAAATCTTTTATA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
AAAATCTTTTATAaagtctggagtcaggactggctctgctcacatagtcgttcagagacccagctggcagaggctctttcatcttcaacagatgactcca
ttagggcctcagtgttataagcaggattctcgtatctggctagcagatggggaacagagagcaaggaaaattttgtgggagggttttatgtgtcaggcct
tgaagtaatataaatcactgttactcatattccattagccacaactcagacacacaccacacttaattgcaagagaacagagaagaaaagagaaagtggt
gaacagctagccagactctgccgaagatgagaattgtattaagcttgtatttatatttaggaaacgctgatatctgatattgagtctgcctttcttttt UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening|Trace comparison NA 60 591 265 NA intron
873 chr20 37771061 37771183 RIP_Alu_chr20_037_01 0 + pAlu20-38975973|15950 NA NA SINE Alu Ya5/8 aaatttttataccattcagcagtagaggagaaaaatatctcttaagaatgaggtgtaagaggtagacagcgctgtattgaggtggtactgccactctgac
agcaactgagtatatgaagtttggcaaaattcccatcccaattggggagctaccaagtcatcacacatgcatttctgttggaatcattttatttctaccc
taaatgataatagaacatatggatttggggatagcagagatgaaagccatttcttccttgtaagtttccactgagggattgtactcgccaaagaagtaca
aatgcattttagatctacaatcatttatcaattatcaaacacctatcaaaatcatagggttggctctatattatgttggaagaatAAAAATATGACTCGA
GAACCCGGGAAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATATGACTCGAacaggcccttgaccttggtggactttaagtgagggagaaataaattatcccagatatttgcaa
tgctagaaagagatgcaaagctaagatgggtaaagaagaagtagtaattaacaccttgaagactatttagcagttctccaagaatataagtagaaaacat
acacgagagctctagggatacagaaagggcatgaagttagtgttaaacaggcctaatcctggtttctggagtctgccctttggcagagacttctgtgttc
cactgaattgtctgttttccttttcttccttaagaaaaaaaaaatctcaattttatttagaataacactgaccactagaagtcaacattttccaaattcc
tttgcattttggtgtggtcatg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
893 chr20 40377146 40377267 RIP_Alu_chr20_040_01 0 + Yb8AC828 GACCACCTTGATGGAAAATACA CATTGCCATTGGTCACATTAGA SINE Alu Yb8 gaaaagatcttatgtaactgaaagactataaaccaagaaggtggttgcattggttttgtaggatgctaagagtgtgaatcaagaacaatggatagaaact
tcaataggaaatatttcagtaagtacattaaaaagcctccttagagacacagcccactccctactccagaaaacagtaaagctacctcagagataaatga
gttctctgtcattggaggtattcaagaataagcactaatgccagttaattggtgttgtagtatggatagaaccattgttttgtgtgtgtttgagattgtt
gaatgacctttgatatgctttccagccctgtgattttctaatattatgactggtgccaatccttgaccaaagaaatatttgacacaaaaaTGGTTACCTT
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGGCTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATGGTTACCTTgtttttgtttttggagaaacactattttctaatgtgaccaatggcaatgaaaaagggcgtattaatcac
taatcaactaaaccatgattagtgcattcctagatagcaaattgatagatattattattatatatgaagaacttaaggatcagagaggtcatgtaatttc
ctcaagtaaagcaccatctctttactttaatacaggagtgtgcaaaggttttatgtaaaaagccatataataaatatcttaggctttgtggagcatatag
tctctgttacaactgttcaactttactgttaagcatcaaaacagccatagacagtatgtaaatgaacaggcatagctgtactattatttttttaatttaa
aggcatgaggtaggatttgcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 691 560 NA intron
924 chr20 44560938 44561246 RIP_Alu_chr20_044_01 0 + Ya55632 AACAAGGGGAAATCTGGACA CAGGCCTCTTCCCTAGCTTC SINE Alu Ya5 tttacatgactgcatccctggtcaacatcttgacagcaacctcaaagaccttgagcctgaaccacctagccaagttactctacaattcctaaaccacaaa
aacaatgagatagtaaatgtttactgttttaagttgctaattttggggataatttgttacacaacaataaataatacattaacctgttatggggttgaat
tgtctccccaaaatgtgtgttgaattcctatacccaagtacctcagaatgtgaccttatttggaaataggattgttgcagatgtaattatttaagatgca
gtcatactggaggagggcaggcccttaatccaatgactggtatccttataacaaggggaaatctggacacaaacatgcacacttAGAATGCCATGTGAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATGCCATGTGAAGttatgctgccacaagctacagaattatcagaagctagggaagaggcctggaacagatccttcagaagagagtatag
ccctgccaacaccccaacctgacttctggtctccagaactatgagatgtatctgttgttctagaacatccagtttgaggtactgtgttacggcagcccta
ggagatgaatacaccctctatatcatgtctttgttctttggctacttttaagataatctttattaaactagttttgatttctttatgtcttgaaatttgg
tgtcttattgtgctcttcatttttatcctgcttggggttcattaaacttcttggacttgtgaatttacattttccgtaagatttgaaaaaattgttccaa
cattaaga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 424 75 NA intergenic
931 chr20 45452486 45452800 RIP_Alu_chr20_045_01 0 - Yb8NBC445 ACCGTGACATGCGATTTACA CAGGAACTCATCAGCATTGG SINE Alu Yb8 ggatctgaggcaagtcctggaatccaggtgacaggaactcatcagcattggagtaaaagagatattcaaaacagagtgaagagtaagtataaataacagg
aggctggctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtctggagatcgagaccatcctggctaa
catggagaaaccccatctctactaaaaatgaaaaaaagaaattagccgggcgtggtggtgggcgcctgtagtcccatctactcgggaggctgaggcagga
gaatggcttgaacctgagaggcggagcttgcagtgagccaagatcgcgccactgcactccagcctgggcaacagagcgagactcgtctcAAAAAAAAAAC
AGGAGGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCT
AACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACcggaggctatttgtgtaaatgtaaatcgcatgtcacggtgagtaatcaagatagtgctgcccttgggggatgtga
ctaaaaggaagcacagagctgcccaattaagtattacatttcccagctttctttgcagctaggcgtggccacatgacaaggccacatgtggatgtggggc
agagtggacagggaggttgtgtttgcacaaaagcatctacctgtgatgtttaagttgagatggatgaaaagaaactggccatgtgcagatactggaagag
agaatcccacgcaatatgccattggaaaggaatcttagtttgagaaattcaagaggtgccagtggtgggggtggtgtgggcgtggcaggggatagactct
tggagaacaaaatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 58 733 408 NA intergenic
943 chr20 46978147 46978441 RIP_Alu_chr20_046_01 0 - Yc1RG95 ACCTAACAGATGACCTGCTGAAA GAGGTAGAGAAAGGCAAGCATTC SINE Alu Yc1 cttcactcatgttggagacttacaaaaaggtctataaaccaactaataggggaggtagagaaaggcaagcattcagttccttttcctttaaagactgcaa
caccggctgggcgcagtggctcacgcctgtaatcccagcactttaggaggctgaggcgggcagatcacgaggtcaggagatcgaaaccatcctggctaac
acggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggcgcctgtggtcccagctacttgggaggctgaggcaggagaatg
gcgtgaacccaggaggcagagcttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactggctcAAAAAAAAAAAGATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGATTGCaacaccaatgcctctgaatttcagcaggtcatctgttaggtgccaggtactgtgccagttacttactgcactagtccatttaacctttg
caataatcctgtgacaaaggtattactatctttatcaccttgggaaactgcggcccaaagagggatcactggactatcaataagcaaatcaaactttcaa
agtctcaatcaactctctgccaatcctacatataaatgcttttcaataatcaagaacaatccagttttttgatgctgcttccagacagataacctcctcc
tgaagaatccacagtggttttcaacaaaaagtaatcttccagggtcctgagtcctgttatttctcaaaatttttatgatacatagcacttataa UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 701 390 NA intron
987 chr20 52726072 52726372 RIP_Alu_chr20_052_01 0 - pAlu20-53930983|55626 CAGATTGGTTGCTGGCACTGAAC GCTGAGATCCATAGACATGTACATG SINE Alu Ya5 ggcagagttttatagtgaagattagaatatttgatataccaggcactgaagggaggttttctgtgctgagatccatagacatgtacatgattagcctcag
aggggtctgtgatcttgtagatcatcttacgatttaatgtgcacagctgaatttttccaaagagtgtgttcgagaaatatttgccaacaattcctcagtt
gtggagaagtgggaaatgccttcatgaaggttcaagtctaatgaggacaatggaaagtgaagagacaaaaaaaaattgggttcactagacaaagggggcc
atggcaagggactcccactcaatcttgagattcaaggaattaacttttgagacaaaacacaaggaatggttgggacttaaccaggtGAAATTAGGAATCA
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAAATTAGGAATCAaaaaggttaatatctagtgacctagaagactctatctaagaacagcagaagaggatgcaagatatggtgtatgcccataacagccc
acctctgcagccaggacccaaactctcaagggccaactctctttgctctgagaggtcagaacaatcattttcccataagtcagagcttgacaacagtcaa
gataccaaataggcctacaagagcagcgtccacaaaaatgcatcactagtgttcagtgccagcaaccaatctgtccttgtgcaagttattgaggacatga
aaatatcacagggagacccgagctccaagcgcttgaagcagtcacattattatgcactgttcaaagccttgcagaaacaaaactgagaccattctttgcc
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping|Genome comparison NA 0 0 0 NA intergenic
990 chr20 53195257 53195258 RIP_Alu_chr20_053_02 0 + pAlu20-54400272 NA NA SINE Alu Ya5 acctttctcattgatcttcaactaggtttacttgcccccttatttgcctattttctgttcccaaatctgtcagttcaaggcaaaaccatgacctcaccct
aacaattgcattctgggcatgttagttgtataatcacattgccctgtcacgctggcatctttaatcattttaaaggtagtcttgacttggccatattctt
gtttaactactttaagcaaattaattagctttgtggggcccccaatgccattaattcatggtctataaaacctcagacctaattgaactttttaatattg
tgtctttactacctgatataagtgtcttttaaattattagaattcctacagttaatgccttattaaatagctacatatatatggaagtatGAAAAATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAAATTTCcaagattgcaaagtaatcaaaacccagattaaatcaaggatgattttatatctgttttattatatgtttaaaaattaccaaga
agtttgagtatgtaatgagaagtagtaggaatgcctcatatttctagctggcaaagaatacatgtggtgttaggtatctgagagtttatcagttaatttc
cattaactaaagtatatgaacaatgaaatactatcttaaagctacaataaaatgtcatttcaaaacttgtaagataactgaaatcaaagggacagataat
gacaagtgttggcaaagatgtggagaaattggtatcctaatacacagctggtgggaatgcaaagtggtatgtcactttggaaaacaatctggtagttctc
agccatt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
996 chr20 53896641 53896944 RIP_Alu_chr20_053_01 0 - 31590 GTCACTTCTGTCTTGGGGCTTATGG GACTAGGAGGTCATGGGCTCTCATG SINE Alu Y ttgggtggaactctgccacgtggccacatctaactgcaagggaagctgggaaatgtagtctggccatgtgcctacagactaggaggtcatgggctctcat
gggcacatggcagtctaagtaatctatggtcactcttctctctgtgcgctaattgtccttaaaggctccatgtgtattttttcacagggccattgctatg
aacctatagacagaacccactgccctgatctggtcaactgttacttttctttggctatcagttcatgtgtcactcccccagggaacacttccctgatcgt
tcccccagacatacctcaccaactagactcttccttgttatatgctataataaaacctcatttcctccataccatctatcttcattAAAAAGAATGCCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAATGCCCAcatttatgtgatagttttattattgtctccttaaccattagaccataagccccaagacagaagtgactgttttgctcatattg
tattcctaagaatctaggcaatttctatagccacttaataaatatttgttatatagatatatgtgtatatatatatatctctgtgtgtgtgtgtatatac
atgtatgtacacatatatatatatgtatattagaatcccatcagtagtttcaagcaatgatatataaattacactcttattctgggactgctttacaaac
tgtcactgagtttctctggagacaattgagaagtggagttgaaaatattcctttcaacacataaacagatttctttttgtagatctctctcattatgttt
ctt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
1021 chr20 57156849 57157173 RIP_Alu_chr20_057_02 0 + Yg6AH147 GCAAAGTCCCTGTTCAGTCC CATGAGACCCAGAGTCAGCA SINE Alu Yg6 tattagatcaataagaaagtatgactacatcatggaccctaattagaagagacgtcccttatactctctgaaatgcttgagaatgttctcctactaacct
agagcctgatggggccattgacgctaattgttaagtgccgttggtcaaggccaatgcatagtcttcgtttagttcctaagtcatttgtggtcggcccatc
caagacagggacacggacaatctcatcagagtaggctgggagggtttccatgatggaatggggctggcctctctgttgaggggggatatccaaggggtgc
acatgagctctgaggaccagtggcaaagtccctgttcagtccttgggaagcatcaccactgctacatttctgatgttctgaagatgggttAGAACAGAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGTGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAACAGAGCgtgagagcaagcagggtgctgactctgggtctcatgtcttgaggctcaattccatcctgtcaccca
gccaggagattcagaggtcctgcagcctcctacctcagacccacatacctggtgtgagttctgccctcctgaccacaacacccctgcaccttggacacag
cttaccacatccttccccagagcatcttgtgccttggagagcaggtgcagttgcagcgttctgggctgcgggcactcgagttcagccctggccagaggct
gtgaggggcagagccaggggatggtgtctccattggtaacgagggtctccatcccttccaggctggccgtgtctgtggccacagatgaataggatgggtg
cccatcttgatgggtcagacaagg UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 60 448 114 NA intergenic
1021 chr20 57219306 57219515 RIP_Alu_chr20_057_01 0 + Yb7AD42|Yb8NBC479|2907 CATCCTGTTTCAACATCAGCA GTTCCCAGCAGGAATCTGAG SINE Alu Yb8 gccctgagcatgaggctgtgtcagctgcagcagggacacctgctcctctctccccctccacaggggacacagttcccaacgtgttccatggaagttggca
cccctgcctcatctgcagcttatcctgcatgctcatggtgaccctgggggcctcagtgagcagagagcccagaatgaaaagccctttcaccccttcttcc
cttcagcctcagggaagggtcctgcacgctcaccccatggactaatggaggagtcccagagatcctgagctccctccatgtgggggaaatcccacttcca
taaacatcctgtttcaacatcagcatttcattgctttcttcacacctaaatcccaagagcaaactgggggcaccaatgaatggtgaataaaacCAAATCC
CCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACC
CGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAA
AAAAAAAAACAAATCCaaggagaaaaaaaaattcagaaacaaaacctgaatatagatctaagaaacaagtggctttccatagctcagattcctgctggga
acacagctccaccaccccatccccttacataggtaataaggccccagcaacagcctggaatggtgacaaatatctatgctttcatgtttgttatttgagc
atccagttgaaccaggggcctaggtccctggctcccattttcaaaggccctcctctccagcaattaggaaggacatggagaatgtccactgcagggcagc
tgtgagctgcaggatgtggtagaagccctagcccagagaatatcaatcactgcctgctccttattgaagtgtcagagagggaaccgggaaggctagtagg
gcaaaccag UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 60 0 0 NA intron
1030 chr20 58360123 58360431 RIP_Alu_chr20_058_01 0 + Yb8NBC444 GGTGATGCTGTCATTTGGTG GGACTTACTCCTGCCAGTCCT SINE Alu Yb8 agggctcaggtacttctccttgggttaaaccgagcttttttcaaaatgttgcttaaggaccatgggcgtaagcattgcctgggtttctttttgagccttc
agatgcctgagccgtctccagacctgctgagatgaaacaccagggctcgggcccgggacccaggcatgcttaactccaggaggagtttcttatgcactct
gaagttgaggcccatggaatgggcagtagtgtgataataagccctgtaagtgattattaaacctccgcagtcctgggctcaactttgatcacctgtatgg
tgatgctgtcatttggtgattagggagtatgaaggtcaagttggaacttcagcagtttcaaagaaactcaagttgaagagggatgatAAGAATGTGTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCAGGAAGCGGAGCTTGCAGTGAGCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAATGTGTTTGttcctctgttcatgatcttagataggactggcaggagtaagtcccttcccttgcattggacatctgtgcttgcctggca
cctgtacctgggaaatggaatgtgtgttttccttttatggaaccacgcttctcctgtttttggtccagggggtttgagagaggctgactccatccctatc
cataagggaacctccctggacctggcctagacagccagtttttcctgtttctttgactatagtaatttgttcagggatgggcatgactcatcaagcaaag
aagacttgagacttgtgcttaggggactccttttttgggaaagagctctctctgccggaacaacaagctgatcagaggtgagcctggtgctgctagtggc
caccagaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 467 146 NA intergenic
1038 chr20 59407575 59407882 RIP_Alu_chr20_059_02 0 - Yb8NBC516 GGGCTCAGGGATACTATGCTC GCCTAGGCCTACCACTCAGA SINE Alu Yb8 gagcccctgcagggcaggctctgagttcctcccctcaggatctcctgagcccagcatcacacatgtgagcaggaactaaaaaagaggcaggttgaaaaaa
cactgaaagggaactggagaggccaagtgcttcgtgggtgatggatgggcaggtggacgtgagtggccaatttgccaagtcctgcagcgaggcccggcac
acaccatagaccaaccggataggacctcatgatggaggtgaggctttggggagggcagagggggtgcaaaggctgagccaggcctggggtggtcatagag
ggagctgggagatgagccaggggctcagggatactatgctctctacctttgggtacgtttgaaattttccaataaaaaatctttttAAAAAGTGGGTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGTGGGTTTTtcctcctgaaacaattgttaaggttctgagtggtaggcctaggctttaaggacttagtataaataatgacctggggttc
actttacaaagcatttaacccacatccacatttaacccacatcagcatttaacctacatcagcatcacacctccatggccagaggctgcacaatctgaaa
atgtgagagcaacagggcctacaggactgggctgtggccggggtctgactgtgagagtcctgctctgggcacaccagtcacacctgctggcctgagaaag
gggacacacaatgactgacgcaaggccaatcttcctccaagacataattgtgtatgtgtcaaaattaacgaatttggctaggccacagtacccagaccta
ggtaccc UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 445 124 NA intron
1042 chr20 59959697 59959988 RIP_Alu_chr20_059_01 0 + Ya5ac2709 CTTTTCCTGGGGCACAATTC AGGCCTACAGCAGTTGCCTA SINE Alu Ya5 cccaccctctccccttccccagccctgcaaccgcccctccacagccctgggccctccctcccacactctccccttccacagccctgggcccctccttccc
accctccctcccaccagccctgggcctccccctaccgtcctctcccctcccctagccctgggcacctccctcccaccctctccccttccccagccctggc
ccctctgtcccattctctcacctcccttagccctgggactccctcccagccctgggcccctcttcccaccctctcccctcccccagccctgggccccctc
ccaccctctcccctcccccagccctgggcacccccccaccttccttttcctggggcacaattcacatgtacactgacttgcataacAAAAAACCACTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACCA
CTCACacggttaatcatgggtgcagttgataattacaggcacaattaaccacttgctaattttgagggtgcgagcagttaattacattcacaattaggca
actgctgtaggcctgggaccggagtcctggtggggggacactccttgtaatcagactcccagggtgaggccctgtggtgggggtgagggtcaggtgatct
gcgaagcacccccctcccagcttcaagtggggagcttacaggcctagaggtcagggcctggcaaacgacctgaaaaatccagcttgaggccctttccagg
gagccccagaggccttctcttgggtcatttcccaggatgggggtcgctgtcactcctctgtcccaggaggattcagagaggtcagttcaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 471 166 NA intergenic
1042 chr20 60004033 60004338 RIP_Alu_chr20_060_01 0 + 13096 NA NA SINE Alu Yb9 caagaaagtgtgcaaggccgaggaaaacagcagtcgagagaaactgaatgtgagatggcccaggtgttgaacttgacaaaaaccttataaaacagcttta
ataataagctcaaagaattaggggaaatataaactgtaaaaaagaactagatggaaatcttagaattgcaaaataagttaacaaaatggaaacttcaact
ggagatggcagaaatccatctgccaaggacctcgtagacacatcagtagacatcttccagtctggaaaacaaagagaagacagactgaagtccaggaaca
caggctcaaagacctgcagggcagcatcaacaggtctaacatacatgtaactggagccccagcagaagaaagtaagattgaaatggAAAAAAAAATTTGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAATTTGAagaagtattagccaaaatgttccaaatttgatgaaagacactgacctacagatctgtgaagttcagagaacctgaaacagg
ctgaatatcctgagaaccacagcaaaacacaacacagacaaacctctaaactgaatatccagagaaccacagcaaaacacaacacagacaaacctctaaa
aaataaagaacatctcaaaacaaagattgaaagtcatgccagagacatgaagcataccacgtacagggaacaagcttaaaaattatagcaggaccagccc
atgctacatggtgagaccctgtctctacgaaaaaaaaagaaactacaaaattagccaggcatggtggcacgcacctgtagtcccagctactcgggaagct
gaggc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
661 chr21 9991027 9991309 RIP_Alu_chr21_009_01 0 + Yb8NBC18 TGTGGTGTGGGCTAGAGGATG TGGGACTCAGATTTCTGATAGGA SINE Alu Yb8 tcctacgaactgacctccttatacaactccatcaaaaaaaggtgcaaagttatctacaaatgctacaatgagaagaattggaaaccctgttaaaaaacac
tctgtatggccatgcaggctcctgagagtaaattccacaaatgtccatctgtctccgtgttttgtgtttccattttgtgcatgggtttgtttgtgtaaat
gtgttgacaaaagtgtgtatggatgaagatggatggatatatttgtgtatgtgcttggtgtgtgtatagctctatgcactcttatgcatacgtgtgtctt
catgtatttataactcacctttcactgataggtgacacccgggctgctcctttaaattcacttgtgtgtgggctagaggatgatAAAAGAATACAGTCAG
CAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
AAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAG
CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATACAGTCAGat
aggagacgcgattctaaatttacttttttggaaaattagcttttattactctagacagaaaccaatgaattcctatcagaaatctgagtcccataaaaaa
actgcttagtaggaactaagggtggcaaatacattacaggaagaagcaagtctcctacgacctgctcctttttatagagctccaccaaagaaggatgcaa
agttactaacaaatgctacaatgagacgaattggaaactctgttaaaaaaaaaaaatctctatggccatgcaggctcctgagagtaaattccacaaatgt
ccaccagtctcctttctctttggtctatgtttccatcatgtgcatggattagtttgtgtaagtgtgttgaagagacgtgtgg UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 56 431 133 NA intron
686 chr21 13338190 13338504 RIP_Alu_chr21_013_02 0 - pAlu21-13338095 NA NA SINE Alu Sc atgttcaagaaatgttataaaactgtgaattaaatgttcattattcaagaaatgaattgaactttacctaatccttatttgacagtatatttttgtggca
aacattaacatttgacaaattagaatttcagggatgcagttttgaaagcttccccccaaaaatggaggtttcctctgggtgatacaaactcacttgattc
tcttctatcaatgatcccaagattccaaatgccaatgtcaggcactcctgctctaaatgggtcactaaggaagtggctgtaaattaaaagagattggctt
caaataaactttgattgcatattcttaaatggtccatggggtttatcctattaccagacaataggattttatctcagctattAGAAATTCAGTATAAAAG
GCCAGGCAAAGTGGTTCATGCCTGTAATCCCAGCACTTTGAGAGGCCAAGGCGGGCAGATCACAAGGTCAGGAGATTGAGACCATCGTGGTCAACATGGT
GAAACCCCATCTCTGCTAAAAATACAAAAAATTTAGCTAGGCGTGGTGGCACATGCCTGCGTCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATTGCTTG
AACCAGGGAGGTAAAGATTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGTGACAGAGCAAGGCTCTGTCTCAAAAAAAAAAAAAAAAAGAGA
AAGAAAAAAAGAAAAGAAATTCAGTATAAAAGtttattctctattagaatgatactcctaggatcctaatgcatatctacttcttaaaatgcaataatcc
atttttattctggtttctattgtaattgatactattttttggcaaaatatcagaagtatgaataaaatggcttattaatgaaagttctaactcatgtatg
tggcttagcaaaatagaagccactaaatcacttgaattttaagggacaattctgtggagaaagatataatattttttctgcaatatgcataacctattca
aatataaccatgattaatctaaaaaggcttaaaggccttctaatagaagatgattatttatggtttatatgagaaaaatcatcatttataaaatattcta
aattctagaagaca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
688 chr21 13502316 13502621 RIP_Alu_chr21_013_01 0 - Ya5448 AAGAGTGCACTGTGGTTGAAAA GGACAGCCTGACTTAATCTCAA SINE Alu Ya5 gagtagaagcttcaaagtacagatgtgctgaggaacaaatgcatgcttgttacttttaaatcacttgtatatattctaatgttctttgtcctcttggagt
ctccaactcagattaatattttattacagcagttactgtttttaaaatggacagcctgacttaatctcaatttgttaacagtgatttaaatgaaatatct
ttgaataattaatattaagtattcatggtatataaaagactagttagctaggttaactttgcttcataaaaatgaagtgattgaagtcaatgtacatgat
gagctatatttcttgaatgcctttatacttgtatttgttgatttgttggaaagaaacctgaacatttattaaggtttcactatatggctAAAGAATTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCTCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAATTGTAtacttttcaaccacagtgcactcttttttttgttattaaataagaagccttaatttaaataaaaatggagatttgcttgttagat
gattgtttttaagaataattgtgttttgtttctacatgcagaagctaattttaaatacttattgaattaaaaagaaaaaagtatgcaaaattataaaaat
tttggccagtatttttactgcttaaatagtgtaaatcatttttaaaagtcattaatttacctattaggaataatcaatggatgttacacagcatctttct
gtctctattaagaaagattttagcctggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcagaagattg
agac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 592 277 NA intergenic
710 chr21 16444094 16444411 RIP_Alu_chr21_016_01 0 - Ya5ac2731 ACCTCACTCAGAACTCAACGAAG ATGATACCCTTTTCTCAGCACAC SINE Alu Ya5 gggatagcattgggagatatacctaatgctaaatgactagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattg
tgcacatgtaccctaaaacttaaagtataaaaaaaaaaaaagattcccagcaaattttgtgaagtctggttttaaatccaggtttatttaactggcccgc
taagtgccagatactctgctaggcacaaccacatgctaacttacttactgaagaatgaaaacaaattctgtcttctcagatttcacacctcactcagaac
tcaacgaagaccacaacaaagcgctcgagagaagcgatttaccagggtgtctgggggtgctgttatcatcgctgccacactaacaaatAAGAAGCATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAGCATTTCcaggggaagacagatccaacacgagacaggtgtgctgagaaaagggtatcatagtcttgattttgtccttt
cgcaaagggtaaatgtaaacaggaaataccagaacacctaaatgtaaacaagtacttgaggaattctaaagttgttctaagaactatggaaaaatatttt
taaaaacattcatattattaaaaatatggaatattgttatggttgttatagccagaatgtatcatggctccacttttataaatactattaaaaagtggta
tttatatcatactccttataaaatttcaaacgtcacatttactgcagtgttttgtcattctttgtagcacaatttaaaatgcactccaaaatggacatgt
gatttttctcttccaag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 429 103 NA intergenic
765 chr21 23664117 23664417 RIP_Alu_chr21_023_01 0 + Ya5NBC351 TTCCTCCCCTTTTTCCTGTT TGTCAGTATGTAAACCCATGCT SINE Alu Ya5 aatttcagatgttcaaacatgtattttttctttaatcaaggctatctagctgcatctactctattcaatatatatttgcacattcttaagatatcttcaa
ttaagcttataaaaatatgaatttacatatgcagcatgatttacttttcaggattgatcttttaaaatttgtacaaatttaatatcttataaatattgca
attttttcgaacactgccaaaatataattgatatcatgaaatattcatttaaattactcaaatatgtcaacaggcaaaaatacatttagtaaccactaca
tgtatagagaataaaaattccagtttggatgtgatgttatatgtcagtatgtaaacccatgctttaaatagaccattttgttctttAAAAAAATTATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATTATCTGtagttttctctgtggaaccgataatattagagataatttctcataacaggaaaaaggggaggaagtaaaaaggaagaaaagaagga
cggaagaaattaaggaaaacaaaagggaaaaaagagataacaaaagaaagaaaaaacacaagtatcctacacaagtatacagctcattgtactctagtga
gatgaatgaattatagatacaataacataataataatttttggtgtttatttgaaaagcaaatgctgcctttctctatatcagcttatgttggatatctt
attatcctaatcaaaagtcagtataacagaagagtagaaaggactactgaaatgtgactgagataaaaattatttaaatgtaaataaataataattaggg
UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 437 123 NA intergenic
766 chr21 23750831 23751057 RIP_Alu_chr21_023_02 0 + Yc1RG140 CTGGTTATCGATTACAGAAGCA TACTCTCCCACATCCCTTACTTG SINE Alu Yc1 tgattaaacgaaaaaaattacgcttttaaagaattaaagttagttttattctgaagtcttactcaggactatagactgaaccagcctctaaaagagcagc
catttagaaaggttctattagttctagcacagtattttagccctgtttatggacaggtggtagaaattttaaaaattttattagaattggttaggaaaag
taaacagatactttgtgcaaaaccacattcaactttctcagacattccattaaagtaaataacatcaaagttttggtgtaggagtaggagtagatctggt
tatcgattacagaagcataatcactaacatcaacagatgttatctcctgtataggaaaaagcaaagactacatcatttactgttcAAGAAATATAGTGAC
AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAATATAGTGACtcggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggtcgaggcgggcagatcacgaggtcaggagatcg
agaccagcctggctaacacagtgaaaccctatctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcgcagctattcgggag
gctgaggcaggagaatggtgagaacccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagaacgagactcagtc
aaaaaaaaaaaaaaaaaaaaaaggaa UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 58 770 451 NA intergenic
807 chr21 29185637 29185974 RIP_Alu_chr21_029_02 0 + Yc1RG231 GGGGTTAAGGAGGAGTGAGAGAT CCAAATAAGGACAAAAGAAGTTT SINE Alu Yc1 atagaggtagtaaaaagaacagtacttgccaggggttaaggaggagtgagagataagtagatggaacacagaggattttttagaacagtgaaactattgt
ttatgatactataattgtggatacatgtcattatacatttgtccaaagccatagaatatacaacatcaagaatgaactctaatgtaagctatggatttgg
ggtcataaatgtgtataaatgtaggtttgttgattgtaacaaatgtaccactctcttgtatgaggctgatagtcggggaggctatgtgtgtgtgtcaggg
ggtgcagagtatagatgggaacaccctctactttgtactcaattttgctgtgaacctaaaacttctctgaaagataaattttattttgaaaaacaCTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTATTCCCAGCTACTCGGGAGGCTGAGGCAGGAAAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAATGAACTCTAATGTAAGCTATGgatttggggtcataaatgtgtataaatgtaggtttgttgattgtaacaaatgtaccac
tctcttgtatgaggctgatagtcggggaggctatgtgtgtgtgtcagggggtgcagagtatagatgggaacaccctctactttgtactcaattttgctgt
gaacctaaaacttctctgaaagataaattttattttgaaaaacactatgatacactaaaacttcttttgtccttatttggtaatacttagaaatataatt
ttattaagattatatttaaaagtagagtcaaaagatatgcatgttttagtgaaatatcttctattgttattactatcatcatagttattattatttgact
tagaaatcctcagtagacattatgaaattagagatca UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 62 949 409 NA intergenic
810 chr21 29523696 29524027 RIP_Alu_chr21_029_01 0 + 54074|pAlu21-29522172 CAGTTGTTAACCTGGAGTGCACAC CGGGTAGCTCTTTATAGCTGTGTGAC SINE Alu Yb8 cttttgtaaaaacgaaaataagacataaacaaataaattaattacaaatttgctgtgagaccaaaataccacacagcccccaaaagctgagatagtcact
gcagatattgaagatctgcattctaaaccacatgttttatccccaatgttcagctcaatgtattgtgcttggtagattcttaattattatttgttcagta
acaaatataatgatcaggtctttgcaggagtattaaattaaaatttgtctgttacactttaatggtcagttgttaacctggagtgcacacaaataatgat
agatcagcaaggagggtctaaaaaccacatactaggaagtccaatggaagaattaggcgtgtacagaagagaaggttaatttattaagagaCCGGCTATT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGCCGGCTATTttattatagattgtcttattctgtcccaagggaagtattctaattgatgttatagggagg
caggtttaaactcagtattaagaagagctttctataattaataaaagacaatgatatggacttgtattagtttgttgtcacacagctataaagagctacc
cgagactgggtaatttataaagaaaggagttttaattgacttacagttccacatagctggggaggcctcaggaaacttataatcatggcagaaggtaaag
gagaagcaagcacctccttcacaaggcagcaggagagagagagaacaaggtgggaagtgccacactttaaaccatcagatctcgtgagaactcactgtca
tgaaaatagcagagggaaacccgcccccatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Trace comparison plus genotyping|Genome comparison NA 0 0 0 NA intergenic
821 chr21 31014758 31014992 RIP_Alu_chr21_031_01 0 - Yb8NBC208|10869 ATCACTAAAGAGACTGTTGGCGTTT CCATGGAATGACATCTAGGTTGTT SINE Alu Yb9 cctcctgagtagctgggactataggcatgtgccaccacattctgctaatttattttattttattttgtagagacagggtctcattatgttgcccaggcta
gtctggaactcatgcccttaagtaatcctcctgccttagcctcccaaagtggtgaagttacaggtgtgagccactgtgctcaggtaccaaattttagaag
cttttttcagattgtctaagattcaatcctcactgagcatcttaaatatagattttcaactctcatgggcaagaaaataccatatttaggttgagttgag
actaattttgtaattgagtcccatcaaaggtttattttcaaaatattcagtttaatctaggcaaaactgcttacccaatggttattttAAAAGATGACCT
TCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGG
GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCG
AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGATGACCTgtttgacttaatgtggcctatttgcttgtgctgtataaaaacgccaacagtctc
tttagtgatttggaaacttgaacactcataagattttcatatttgaacatatactctaagacgataactttcaaaagaacttaaaagttatttctcaact
taaaaagttattttgttacacaaatatgttagtttattgaagaatgtcaagctggttttctttacacagttgtcctcctaaggataattaaaatgctatc
atggcgttccagtttgtactcctactacaatacctggcatttaggtgcaagtaaaacttacagcgcatatgtaaattgtgaatactctgaaggtgttttt
attttatagtgtttgatagcacattttaaaatct UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Trace comparison|Candidate screening NA 60 357 111 NA intergenic
826 chr21 31706106 31706107 RIP_Alu_chr21_031_02 0 - pAlu21-31704668 NA NA SINE Alu Yb7 tctcatcatctaccctctttgcaccccgccatcctttcaagtcttcgttgtctatcgttccacactctacagccatgagtacacattatttagctccgac
ttagaagtgagcacttgcaatacttgtctttctgtgtctgacttaagataacggcgtccagttccatctaggttgctgcagaagacatgatttcattcat
ttgcacaactgaatactattccattgtgtatatatgtcacatttcctttatccagtcatctgttgatagacaccgaggtggattctgtatctttgctact
gtgaatcctgctgcaataaatataaaatgcaggtgtctttctgatataacgatttcttttcctttgggtagccgtcttgtttctttAAAAGAGCTGACGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCTCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAGAGCTGACGAaatgcactttctagtgctgtccgattgcccattacatacgttcttacacttgatacccagcagtcggcaaaccatagcccgcctgca
ggccagatcccgcctgtcatctgtttttgtaaataacatttattggggctgggcatggtagctcatgcctgtaatcccagccctttgggaggccaagacg
gatggatcacttgaggccaggagtttgagactagcctagccaacatggtgaaacctcatctctattaaaaatacaaaaattagctgggcatggtggcagg
cacctgtaatcccagctattgaggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagatggcgccattgcactcca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
832 chr21 32389721 32389947 RIP_Alu_chr21_032_01 0 + Yb8NBC26 GGGTCCCTCTCTGAAGGTAAA TTTTTCCTGCCAACCAACAC SINE Alu Yb8 agaacagtgaaatgaaaggaagttggatccctgtatgacctgccagatcagagcagctgccctccatcctctctcccgaaactgccctgttcagctcaaa
ctttaaaggagagaaaaatgaacattccatcttgtttaagtcactcttattttcatctctgctaaagcaactgaaccaacatatacaaactggatcaata
agtaatttgcgctgtgattttgcttactatcatgcacatatattggtgtccaaaaaacatgagtgtgaaatcttgtcaaaagtttgctcacatgttacct
gttttttcctgccaaccaacaccacacaccactttctcataaaggtcttcttagatccaggaagctaacccagaaccctttaaaaatgatCATATTCTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTATCTACTAAAAATGCAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAC
AAACAAACAAAAAAAAAACAAACAAAAAAAAAAACACATCATATTCTCAaacagctaatagaaaggtcaattcagagtgatttaccttcagagagggacc
ctcagagagaaccttgttttggggagttgtaagaagccctgtaggctctatgaccttatatctcagatttttaggacaattctaatttaaactattctgg
ctcagttcccacaaatgtatttgtaagtgtacttgccatggtttttgttgagaaatgtggtcgcagtccctacgggcccctcagctgattgtcatccctt
cgtgtcatcttgccctctggtcttcc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 56 499 150 NA intergenic
865 chr21 36786319 36786628 RIP_Alu_chr21_036_01 0 + Yb8AC1817 AACTCACGTCCACCCAGAAC CGTGGCTGTCTTCCTTCTTC SINE Alu Yb8 gaaggtcatgtgtgaggctgtacagctttcccagtaaatatggtgcatgttgggaggacaggtgcatgtggacaggccgcctctcttcccaagcacccgc
tctgggctggggtctcaccactggagtaagaacagtatcatgatgcattaagtgaggagtccttgacgtgggttgaatagtgtccctgcaaaactcacgt
ccacccagaacctcagactatgaccttctttggaaatagagtctttatgggtgtgattaagttagtatgtggctgactgcggtggctcacgcctgtaatc
ccagcactttgggagcttgaggtgggaggattgcttgaggttggtagttcgagaccagcctgggcaacatggcgaaactctgtctctAAAAAAAATGCAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCCCAAAAAAAAAAA
AAAAAAAAAAAAAAAAATGCAAaaattagctgcagggcatggtggcgagcacctgtaatcccagctacttgggaggctgaggtgggaggatctcttgagc
ccgggaggtggaggttgcagtgagcagtgattgtgccactgcactgcagcctaggtgacagagcaagaccctgtctcaaacaaaacaaaacgaaaaaaag
gtaaagatgaagttatactggcttccaatggctgctgtccttacaaaaaaaggataggcatggaagaaggaagacagccacgtgacgacagaggcagagg
tggggatgatgcgactacaagccagggaaggccaaggagacctggagccaccaggacctgggaccagcaaggaaggggcctcccctagagccttcagagg
gtcgtggcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 791 469 NA intergenic
875 chr21 38014871 38015179 RIP_Alu_chr21_038_01 0 - Yb8NBC36 CTAAGGAGAACGGGACAGAT TATATTCTGGATCCCAGTCC SINE Alu Yb8 ggattacatggtaattctatgtttaactttttgagggactaagatactgtttttcatagcagctgcactgttttacactcccaccagtgatataccagca
ttccaatttctctacatcctgccaacacttgctattttctttttttaaaataataaccatctaatagatgtgaagtggtatctcattatggctttgattt
gcatttttctaatgactagcaatgaagaatttcttttcatttgtttattggccatttggatatcttctttggagagatgtctattcaagtcctttgccca
tttctgaatgggttgtttattttttgttaaggtgtaagagttctttatatattctggatcccagtcccttatcagatgtatgactAGAAAATGTTTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAGAAAAGAAAATGTTTTCTCccattctgtgggttgggggtgatttttgatgaggaagaaaccacacttctgtgtcactaagggcactgcccaaacaa
ctgacacttggttaaacccaagagaaagatgacatctgtcccgttctccttagctcactgtgacagcgcccccagcccccaggcctcctggacaccctcc
tccttcaaggtcccctggacagttacagggatagctgactcgacttgtcctataggtttcactcctcaagttgcctcaaacttgcatacattctcatttt
tccttctaattcatacccccaataaggaccctgtagggtttagttacgattttcttggattcaggtcaagcaaatgtctcagtttctaaattgtcagctg
tatgggat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 506 183 NA intron
878 chr21 38512412 38512742 RIP_Alu_chr21_038_02 0 - pAlu21-38510832 NA NA SINE Alu Ya5 aaatttcacacagctcaagtccgtcctcaaactctcctttaaataataaacgacttcctcctttcctatctcaggagcgctgggcccttccctcggggat
ggttatacttacgccatctgctggttgttaatgggactgcacttgctgctgtaagccgcagtaccatggttctgtgcccaagtcctcctagaaaacggag
gccttggtattggtggactaattgaagaaatacagatatgccattcatcatttagaacaccaagagggccacctgaggtgttaactttacttttaggagt
atttcttagaagaggatatatttcatattttggctctccaattctttatgctgaatctaaggaaatattcttgagttcagcttcAAAAACAGCCCAGGTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCCCAGGTGaggttataaatgctgatgtggaaatgtcagagtatgtggtcagtgtgacaacaa
tctggataacctgaaaatgttcatgctgcaaatgtttagaaaggctgtatagcattaaaaaaaaatgctttcaatcgaggtgccagaaacatgtgaccta
atgcttgcaggtgggaatggagtggattttggctttggaaacatataagactaatttttatttctttttttatagagacagggtctctccctgtttccca
ggctgaatcatagctcattgcagcctcaaactcctgagctcaataaatactcctgcctcggcctccagagtagctgagactacaggcatatgccactgtg
ctcagctaatttctttaaattttttgtagc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
884 chr21 39266186 39266498 RIP_Alu_chr21_039_01 0 + 19513|Yb8JW664 CACTGAATTGTGGCATTAGGAA CTCTCCTGCCTCTCTACTTTGCT SINE Alu Yb9 ctgactgaatctttggatgcccccgctccatccccatcttggcacattggatacacaccagtcccgtcattgagtactgtctctcttatgagacggaagg
caccttgagcacagagcattggcctggtcatcttcccacccctaagagtggatgcttcacaagtattagcaagataaatatctatgattttaaattccca
tcgtaccgccaacccatcttgtatgcatttctaaaaatgtattatcttgacattagaataccttttagggaagcacctgttgctgttttccaaaatatct
caatacagctgcttggggtggaaattaagaatatgaggatatggatcagtgtaaaagaaatcactgaattgtggcattaggaattatcttAAGAATTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAATTTGAgaaaggggcccggcacagtggctcatgcctgtaaacccagcatgttgaaaggcctaggtgggaggatcacttgagccc
agaagttcaagatcagcgtgggcaacatgacaaaaccccatttatacaaaaaatacaaaaattagctgggctcggtggtatgcacctgtggtcccagcta
cttgggaggatgaggtgggaggatcacgtgagccccaggagttcagggctgcagtgagccatgatcacaccactgcactccaacctgggcaacagagtga
gaccccatctcaaaaaatgaaaccaaacaaacaaacaaaaacagaatttgaaaaaaggaaaagagcaaagtagagaggcaggagagacaagggggcagag
agctgaaaaccg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Trace comparison|Candidate screening NA 60 725 403 NA intergenic
894 chr21 40508749 40509060 RIP_Alu_chr21_040_01 0 + Yb8NBC106 TCACAGCACAATTCACAACTG CTGGGTTGCATTTCATGGTA SINE Alu Yb8 agctttgaaagaagctgtgagtagcagcctacaccgctgtctttgggaaacaccactgaacatgtaaggattcttatagactacaggtaaagggtggaaa
aagagatttccagcaaatggaagccaaaaacaaggagtagcgattctgatatcaaataaaacggacttcaaagcaacaacagcaaaaaaaaaaaaaaaaa
caaaacaaaaaacaacaagaaaaagacaaaggtcactatataatgataaaatgaccaattaaacaagaagatgtaacaattgtaaatatatatgcatcaa
actccagagttcctaagttcttgaagcaatcagtatatcaaaaagacacctgtacacatgtttatcacagcacaattcacaactgtAAAGATATGGAATC
CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCT
ACTAAAAGTACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGG
AGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGATATGGAATCaacctgagtcctcatcaatccatgaatggataaagaaaatgtggttcatacacaacttacccatgtaaaaaacct
gtacgtgtaccctctgagcctaaaataacagttggaaaggaaaaaaatcataaaagcaagactcaactaaaaaaaaacaaaaagaaaaaattgtgatata
tataccatgaaatgcaacccagccataaaaaaaaatataatgacttttatagcaacttggatgaaactgggggccgttattctaagtgaagtaactcagg
aattaaaaaccaggtactcatgctctcacttataagtgggagctaagctataggtatgccaaggcattcagagtggtgtaatggacattggagactcaga
agtggggaggg UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 558 233 NA intron
895 chr21 40672352 40672689 RIP_Alu_chr21_040_02 0 - Yc1RG97 AAGTGCACACTTTGACGTTCAC CCTTGATTGGCATTCAGGTTTA SINE Alu Yc1 aaatacattttaactacccaagaagcacattaatagagtcttcttttaagatactcaaatacgtgacagtgggaaatgaaacataatttctcctcccctt
cctctaatccactcatgatttcagaggcaaccacagttaacatttgggcagatatctgctgatccaggcctctctgttcatttgcatacacaaatttatt
catataccactgcctttggtacataacattacagattgttatgtaaccactttagactatgtagtggagatttttctgcagggtatgtgtacatatacct
tactgtcttttatgtaactgcagagtatagatgtaccctaatttatttacttatttatcccttgattggcattcaggtttatgtATAAGTTTTCATTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAGTTTTCATTGTTaaattatgcatccgtgcatttgggggtgaacgtcaaagtgtgcactt
ctgagtttttccataggataatctttgacgttgcaagagggattgaaaagtatgcaagtctcacacttgaaatatactggcaagttgcccttcaaaaatc
aaaaggcttcaccaatttacatgcccacctatagaggtttttatttcccataccttttgtcaagaccacttattttcaaacattttattttttgttctaa
tctcctgtatgaaaagaatctctcattttaatttacattgatttgttcaagttctaagtaaattttgttcagcaattaattaaaacgtaattcatttcac
ttgtgaaaaggtgacatttttgcaatattaagttgac UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 441 88 NA intron
897 chr21 41006072 41006290 RIP_Alu_chr21_041_02 0 + Yb8NBC280 TTTTGGGAACCCATTGAATC CAGCTTGCTAGGCATTAGGC SINE Alu Yb8 aggaggccttctgcatgcaactcttcctctgagcatctcccttcaggtaactcaacaggagacatcaaatgaggctctgctagttaccctctacaaccat
gtctttctgaaatgtttttctattttaaataaagtaatcagaaagtgccaactaacatcccatgtaagctccccaatagagcatgagcaataaataaaat
acaccaagatggaagaaagtactaaatctggattatcactggattaaaacatttttacaagcaataattattacattgaataaggcaatgacacaactaa
gactctcaggctgttatgtttttgggaacccattgaatctggacagtgacagtgtgtagtttgttttatgaaaacatactcatgtAAGAATCTAACATTT
CAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAATCTAACATTTatctattatataaacattttgatttttagttaaacttcacatattcaatgggctcatagccctaagc
ctaatgcctagcaagctgtgtgtgtttcgtaaatgctagttggtgcattcactgtccccatattttttcattttcccatctcataattcatgtggtatgt
caaacttctgttgataatataatgtaaccttttgaagtatttttggaatttctattttacaaaattacaactcttttaagtagattggaattacctctca
cagtttaggaactgactgtatagaagttgagacagagagagagagagagagagagagaaggtggggggtacaggcgaaagcctttagcgaggtcctgata
tagagagatgcttacaaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 58 399 166 NA intron
900 chr21 41324766 41325073 RIP_Alu_chr21_041_01 0 + pAlu21-41323632|Ya5NBC243|528 CCATGATTCGTCATTCACCA AGGAGACCTGCCAATGAATG SINE Alu Ya5 ttgcatctccctaatgattagtgatactgagcattttttcacatgattcttgcccacgttgtgtcttcttttgagaagtgtctgttcatgtcctttgccc
attccaaaatgagattgtttgttttctgcttgttgacatgcttgagttccttatagattctggatattggacttttgttggatgcatagtttggaaatat
tttctcccatttgataggttgtctgtttactcttggttaatcctcctacatcacacgcctaccttcaaaagtgttctgaattcagggcctccatgggatt
ctactgagcacatagacagctgcagagttgagggtcttcctttccatgattcgtcattcaccatcactctacacagttttgtctttAGAAAATACCTAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAATACCTAGAaagctgtcattcattggcaggtctcctccgattctctttctggttgaaagagaatacattttttattctcttactttcc
ttataatagcaacttcagaggaagagataaaaacacatacgttccacctctcattctaaactggaagccactttctgaaggaatcaacttcccaaagaag
aatttcatttagttaattattcaaaagattcaactaaaataagaaaattccattcaatgacattttcttgggtatcactttgttcaaagtacagtgcttg
actaactcaggaatttacaagacagtaggatttggttcttgcccccagataatttatgttctgatagaaataacagacatttatcaacatgttgtaactg
tacattt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Selective database search followed by genotyping |Trace comparison|Genome comparison NA 60 406 86 NA intergenic
915 chr21 43258979 43258980 RIP_Alu_chr21_043_01 0 + pAlu21-43280486 NA NA SINE Alu Yb7 nnnnnnnnnnnnnnnnngtttcaactgttcattgacctcattgagaaattacatatttgggctgggcgcagtggctcatgcctgtaatccctacattttg
ggaggccaaggtaggaggatcccctgaacccaggagttcaagaccaacctgggcaacatgatgaaatcgtgtctctacaaaaaaatacaaaaattagctg
ggcatggtggcacacatctgcagtcccagctactcttgaggctaaggtgggagggtcacctgaatgcagggaggatgaggctgcagtgagcagagatcct
gccactgcactgcagtctgggcaacaaagtgagaccctgtctcaaaaaagaaaaaaaaatctaatttcaattaaaataaaattaaaAAGAAGGCCAGTTT
TGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTTGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGGCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAGAAGGCCAGTTTcgatggctcatgcctgtaatcccagcactttgggaagctgaggcaggtggattatttgaggtcaggagttcaagaccag
cctggtcaacatggtgaaaccccatctctacaaaaaatgcaaaaattagcccattggtagtggcatatgcctgtaatcccaggtactcgggaggctgagg
caggagaatcatttgagcctgggaggcagaggttgcagtgagctgagatnnnnnnnnnnnnnnnnnnnngtttcaactgttcattgacctcattgagaaa
ttacatatttgggctgggcgcagtggctcatgcctgtaatccctacattttgggaggccaaggtaggaggatcccctgaacccaggagttcaagaccaac
ctgggca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
937 chr21 46212100 46212400 RIP_Alu_chr21_046_01 0 + Ya5NBC24 AAAATTGAGAGACGAGGAGAAGGT CCTCATCAATACTGTAACTGTCACAAC SINE Alu Ya5 gtttccccggcacacacacctcacaccatacacaagaatacaccccagtggatttgggatctgaatgtaaaaaatgaaacaagtactagaggaaatacag
gtgaattcctccataccctgaatatgaggaaagatttttctaggaatcaaaacaaaagattaatttgactacatgaaaataatagcattctgcatggccc
aaaacaccacaaaggcaaaggaaaattgagagacgaggagaaggtgtgtgctgcacaatcacagatgcatagctaatattccatatattaaaaaattcaa
tatttgagggggaaaacatcaaaaactcaacagaaaaatgggcaaaagacatgaaacatgaatagatcatttctccaaaaatgtataaaaatGATCTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GATCTTTAattatatgaaaagttgttcaacttcatttggaataagaaataaaaattaaaactacagtgagaggtcctctccaatctcgtgttgtgacagt
tacagtattgatgaggccgtggcctctcactggctgacgactccaagctgcacagccgtgcggaaggcagttcaatccgataaaactccgtgacccagca
actccacgttacgaattcacaccgaagaaaacctccaacgataggaagacttgtaggcacaaggtcatttgatgcagtataattggtggttgtgaaatac
cggaaaaaattaaatgctcctgtgtagacgtgtgttggctaagctaaggtactgccacatagtgccttcatgcagctgcacagagaatgaggatggtctc
UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 595 286 NA intergenic
697 chr22 14728018 14728019 RIP_Alu_chr22_014_01 0 - Ya5533 TGTCATTTTGCCGAGAGATG TTCCTTCCTACCAATAACCAGA SINE Alu Ya5 atttttctgaagtcatacccccccacacacacaccttcagtgatgtaagattacttatggtgcaaataatttggcagataacccaggtgacatgacgact
ttataaaagagatactgctatcatagatgtaaaagccagaaggaacaagcaacgtggatactgatcctccatcatggcctttagttatgctatcagattg
gaaacagaatcaaattcttagctcaagtacagcagagttttagaaaaagggaggcttgccacaggcacaaagcttagggaaatttgaggagagacacaga
gaaaaacaaacatgtaaactgctctctttttatgtcttccttcctaccaataaccagatatctactccatttctgtacttcattcaacaaattaAGATTT
ACCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAA
AAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGA
GCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGATTTacaagaccgtacattgc
tcttttgagaactcacctaaatttcatctctcggcaaaatgacaggtcatctctccttgccatcgttacttcaaccaactgacacagtttcgtttttatt
tgcattgcatggaccatattcccaagcacacaaacgtacctatacagacatagagacaataaaaaaattatcagatacagacacaagataaggcattcaa
aatactttaaccatcaaataaaatgaactaaacgtaagtttgaaaacagtaagacatttatttataggagagcatacacaatttctggttaccttgttgt
cacagcctagtttgtgtgcagtaaagaatggcaaattattttatcaattactatcaatatcaatgtgtgacaggttt Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 408 125 NA intron
702 chr22 15409202 15409508 RIP_Alu_chr22_015_01 0 - pAlu22-15409101 NA NA SINE Alu Sx atgcccagtcttggaattgctggcgcaaatggtggagcagtttagattcaggaggtacatgtacaggtttcttacatgggtacgatgtgtgatgctgagg
tctagggtatgagtgatcccatcacccaggtagtgagcataataccccacagttggttttttcaactcttgtccttctaccttcctctctccccctaact
agaacacagtatctgttcccttctctgtgtctacgtatacacaacatttagctcccacttataagtgagaacacacagcattctgttaatttacttaaga
taatggcctccacactgttcacaatagcaaagatgtggaaccaacccaaatgctcatcagtgatagactggataaagaaaatgtAGCACATAGACACTGT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTAGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAGCA
TGGCGAAACCCCGTCTCTACTAAAAATACAAAAACTGGCCGGGCATGGTCGTGCATGGCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGC
TCCAACCCAGGAGACAGAGATTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCGGTCTCAAAAAAACAAAACAAAC
AAACAAAGCACATAGACACTGTggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccctcatgtt
cagcaaattgacacaggaacataaaaccaaacactgcatgttctcattcataagtgggaagtgaacaatgagaacacatcgacccagagaggggaacatc
acacactggggcctgttgcaggggtgggggactgggggagggacagcattatgagaaatacctaatgtagatgacgggttgatgggtgcagcaaaccgct
atggcacatgtatatctatgtaacaaccctgcacattctgcacatataccccagaacttaaagtagaatagaaaaaataaaaaataataaaaataattaa
aaaaga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
709 chr22 16258797 16259115 RIP_Alu_chr22_016_02 0 - Ya5NBC221 CAGTTTTCCATATACATGTGGGTTC TAGTGTTAAGAGGCCCATTTTCTAC SINE Alu Ya5 atctgacaaaagatgggagatacctaaagagttgagaatttgaatataaaacttttctgtcagaaatcaaagaaaacctagagagagagaggtaccatca
tcatgggtcagaagactcaatagtgttaagaggcccattttctacaaattgacctagatattcaatacaactccaatctaaatgctagcaggcttttttt
gtagaaactgataagctaattctaaaattcatatggaaatataaaaaatataaaatagccaaagcaactttgaaaatgaacaaagtgagaggactaacat
tatttgatttcactacttattaaaagctgcactaattaagatactgtgatattgtcttgaaaacagaacagagtgaacaatgacataGAACAGGGTCCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGGAACAGGGTCCAGaaatgaacccacatgtatatggaaaactgacttgggcaactaataaaggatagtctttttttttttttt
tttggcgggggggtcggggggatggggacagagtctcgcactgtcatccaggccggagtgcagtggcacgatctcggctcactgcaacctccacctcatg
ggttcaagagattcttctgcctcggcctcccaagtagctgggagtacagacgtgcaacatgacgcccggctaatttttgttatttttagcagagacgggg
tttccccacattggctggactagtctcaaactcctgacctcgtgatcctcctgactcaagtgctaggattgcaggtgtgagccactgtgcccggccaggg
tggtcttatctacaaatg UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening NA 60 640 313 NA intergenic
710 chr22 16421929 16422272 RIP_Alu_chr22_016_04 0 - Yb8NBC120 CAGTGGATCTCCATTTTACCTCTC GGAAAGGTTTCAGGAAGAAAGTG SINE Alu Yb8 aaagttgtaagttactagccaatcaaaacaaatacaaaatataaagtcccattccagccaaaaaaaccagacagcaataaagtagacccatcaggttata
aacgaccctgtctcctttgttcagtatactctcgtgacaaaactgctagcaagtgtaccctttctgcagaaagtataaaaatggccttactaaaaaaatt
aaatttatattcaagtgctatttctttacggcaccaaggaacaagcattcctacaagtgagttgtgaactcaatgctgcttgagttaaggaaggtttctt
ggagttttggagacatggaaaggtttcaggaagaaagtggcaattgattttgggttggaggaaaggcaaagatgttgatggaattATAAAAGCAAGGATA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
ATAAAATAAAATAAAATAAATAAATAAATAAATAAATAAATAAATAAAAGCAAGGATAgagaggtaaaatggagatccactggcaaattgtctaatttgg
ggcaaaaggctgttaaaccacgttgggtctagatgaaacagggccctgctgccaggcgaaggatctgggagaggtgaagaatcagcactggatactttga
agtcagatgcacgttcagattccagctcctaaattatgaagtaatacactttaggcaagctactttagtgcttttttcataaaaggggaatgggacatcc
atgtaacaggattgtaattaatctgaaatgaggctgtagagtggacttgaaaataggattgcttttgaaacagtttgaatcttagtttaccgcttactag
ctgtgtgaccttaaacaagttacttgtctgtgttgcctgttca UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 532 212 NA intron
710 chr22 16474086 16474380 RIP_Alu_chr22_016_01 0 + Ya5NBC109|52565 GTGCCTGGTACTCTAGAAATAAAACTCTCT AGAATGAAACTCCGGCTCAAA SINE Alu Ya5 aaatatttgagacagaaatgcatttactgaggccaggcgtggtggctcacgccagtaatcctagcactttgggaggccaaggcaggtggactgcctgagt
tcaggagttcaagaccagcctgggcaacacagtaaaaccccatctctactaaaatacaaaaaattagctgggcgtgatggcatgcgcctgtagtcccagc
tacttgggaggctgaggcaggagaatcgcttgaactcgggaggcggaggttgtggtgagctgagatcgcgccactgcactccagtctgggcaacaagaat
gaaactccggctcaaaaaaaaaaaaaaaaaagaaatgcatttcctgaaataatagctgaaataggacttctgtatttgatccagAAAGAGTCATACAAGA
GGCCAGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAG
TCATACAAGAaactatcaccatcaaaacaatattaagcaatatcctatcagctgttatgtattagtgagagggaaaatagtcttttcttcttcaaatgat
aaactagtcaaatagcccaaggtttcagagagttttatttctagagtaccaggcacataaaaatttaaggctgtactaaaaggacaatgaaaatattaaa
caatatatcttggtcatattttatttactgatttttttcttgagacagagtcttactctgtcacccaggctagatggagtgcagtggtgcgatctcagct
cactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgagactgcaggcgtgcaccaccacacccaaccaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 58 561 251 NA intron
712 chr22 16658469 16658772 RIP_Alu_chr22_016_03 0 - 19250 NA NA SINE Alu Ya5 gcgcgattttggctcactgcaagctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacgggtacccaccaccccac
ccagctaatttttgtgtttttagtagagacggggtttcaccatgttggccaggctggtctccaactcctgacttcaggtgatccgcccgcctcagcctcc
caaagtgctgggattacaggcctgagccaccgcgcccagcccgcatctcctgctttctttacccgcccttgctcgagtgagaagaggtagtgagctgctt
tctcctctgggttcccggactgcagctactagctttttggatttagaattccagcaagttccagggggaaatgaaataaatAGAAAAAGGAAACTCAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGAAAAAGGAAACTCAGGAtgccttgtgaatcacacagtgccccaccactgacactcataaccctttgaaggtgggctcatcagctcatcacttccc
ctttcccagaccattatgctgcgtaaattcaagacttctcgggttctgcccaccacgtgggggctgctgcttgaaggggacgttccccactgcagggagt
ctcttgtggactttaggccctgttctcgccacgcccgtgaggacgacggcaatgccagaattaggtttcttttctgtttctgctcttgtgtcattcttag
agcacttagtaatattcgttaattggagggaaaatcacccttttgagatctggagcctcatatgtaaaacctggttgcccttgcccctctgtgcctgcat
ccc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
808 chr22 29318422 29318649 RIP_Alu_chr22_029_01 0 - Ya5NBC223 GTTCTCTGTAAAATGGACCAATCAG CATAGACCTTCCCAGTGAGTGTTAC SINE Alu Ya5 tgcagcgaccggagattgttaccactgcactccaacctactaaacagagtgaaaaaataatttttttttttacgggttttaccttagagctctaatcctg
gcatagtactgtgtccggaattggtgggttcttggtctcactgacttcaagaatgaagctgccaaccttcaaggtgagtgttacagttcttaaagacggc
atgtccggagtttgttccttctgatgctcggatgttttcggagtttttttccttttggtgggttcgtggtctcgctggttgcagcagtgaagccatagac
cttcccagtgagtgttacagcttataaacgcagtgtacacccaaaaagtgagcagcagtaagagttattgcaaacagtgaaagaatAAAACTTCAACTGC
GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATGCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACT
CCGACTCAAAACAAAAAAAAAAAAAACAAAACTTCAACTGCgtggaaaaaaaaccgagcgagttaccacagctgagtcgggcagcctgcttttattctct
tatctggccccacccacatactgctgattggtccattttacagagaacggattggtctgttttacagagtgctgattggtccgttttgacagggtgctga
ttggtgtgtttacaatccctgtgctagacacaaaagttctccaggaccccactagattagctagatacagagtgctaattggtgtatttacaaaccctga
gctagacacagggtgctgattggtgcatttacataccttgagctagatatagagtgtcgattggtgtattcactatcccttagctagacataaatgttct
ccaagtccccacaagatcagctagaca UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 455 214 NA intergenic
826 chr22 31620326 31620630 RIP_Alu_chr22_031_01 0 + pAlu22-31620226|Yb7-Yb8NBC125|1089 AGCCAGAAACCCTGAACAAG AAAGGCCCCAGAAGTATACCA SINE Alu Yb8 taggagaagaaatccttttgtaagcaggagtgggactggggaacggaggcgttaatcaagtgagactttcatacaactgagaaaaggttaacttccccct
aaagaaggagcgtgtgtgcagggaatgaggggttggtccatgatggaggttatgggcccaccagtggcctctatatggctttatctagagcatttctgaa
ttcatccacttaaaatttaattaggaaaaagggttattctgcttaaaattaaattagcttggaaacaccacatataataaggcctggagttaaaatgctg
ggttcttgtcctggccctgaaactcactagccagaaaccctgaacaagtcaatttccctcttttgagccttcgttcttttacagttAAAACAAGGAAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATATAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACAAGGAAGTCagatggtatacttctggggcctttattagctaaaatattctgagagagcgtgaccttctagtactgtctcccatggaactgt
cctggtgaaacccagagatcagctcatgaagatggacttgaggcaagagagagctgaaatgaaattgggcttgagttgccactcagcccagcaccatctt
ttcagatccttgttctgaagcagcagatcctcttcatcttttcagccctgaaggaatcccttacatccgggtcactgcaaagttccgggcaaatttcctg
acaaacttctgttcattttttaaaacccattgtaaatgttatggtcatttgttcattcaataaacatttattgaataaatactctgtgccaggtgttctt
ctaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison|Genome comparison NA 60 0 0 NA intron
855 chr22 35451589 35451747 RIP_Alu_chr22_035_01 0 - 20709 NA NA SINE Alu Y? ttgaggtgtcttccagccatccctgtgaggtgtcaagaaggctgttggagaagccagtctaggatgcagaagccagctgtactggagatagaaatcaggg
agttggcagggcacagtggctcatgcctgtaatcccagcagtttgagaggccgaggcggtcggatcatttgaggttaggagttcaaaaccagcctggcca
acatggtgaaaccccatctctactaacaatacaaaaattagccgggcatggtggcgcatgcctgtagtcctactacttggagggctgaggcaggagaatc
acttgaacccgggaggcagaggtggcagtgacctgagattgcgccattgcactccagtttgggagacaagaatgaaactctgtcAAAAAAACAAAAAACA
CACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAG
CCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAAAAAAAAATAAAAAAAAACAAAAAACAaacaaaaaaaacccacaaacaaacaa
aaaaacagaaatctgggagttattgatgtgtagccagcatgcgtgaggatgttcccatttgtccccaaggatctagacatgacacagggaggaggaggtg
aaggccctgtaatataatagagtcaggaatattttgtaaagagcaccatcaaagccatattaataggaggactgtgtgtgtttctcatgtcgatcaagct
gtgctgtcttggaaaatcaaatactttcgtgtttaccttgaagtaaatctaaagaaaccagccagtgccactgctgaagttgagacaccaagttgaaccc
aagcaccttccatgttttcccagcaacgtccctcggcctcaatttactcgtccataaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
893 chr22 40464991 40465300 RIP_Alu_chr22_040_01 0 - 14672 NA NA SINE Alu Ya5 cagccaaagtcctctttgccatacagcagagtatcagaaatcaagtgttgcctctagaacttcacccattgtctgaatcccttccacccctaccttccat
gctattacttcatacctcagagggcccctcacctgcaggcacttctaaatccctccagagtgctgaggaggaactttcccctttgaagaatggccttctc
tgaatctctactggaggcatggccctgaggtgggaaggagagacaggaacctagtgatcaagtatatgctgtgtctcagtctatgcttggatgactgtag
acctcttcttctcacactgcagtctgacattcccatacacctaactttccaagagatcttggctatatccttgcaaatagctcctttaAAAAAAATCATA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGAGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATCATAgcaaagctgggcatggtggctcacgcttgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggag
atcgtagccatcctggctaacatagtgaaaccccgtctctactaaaaatacaaaaaaaattagccaggcatggtggcgggcacctgtagtcccagctact
agggaggctgaggcaggagaattgcttgaaccccggaggcgaaggttgcagtgagccaaaatcgcaccactgcactccagcctgggcaacagagcaagac
tccgtctcagaataaaaaaaaatggtagcaggggcccagcgcagtggatcatgcctgtaatcccagaactttaggaggccgaggtggaggtcaggagttc
gagaccagc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
899 chr22 41230470 41230766 RIP_Alu_chr22_041_02 0 - pAlu22-41136811 NA NA SINE Alu Yb3a1 tctctcttggatcaaaatatccgtggactgctctggaaagtgaggagttgggggttgttggggttcatcttagaaccgcctcccagcggtgcccccatcc
tgccctgggttcaggcctctgaggagaaaccaaagcctgggctaccccaactcccacagctgggtcccttgaccctgggttggatttgaggctcagttaa
tctcagctcacgctcagctggcacaagccaggcgcaagcaagtgctgaaggcacagccttgctggggcgcagggagttcaggacttggtcacagtcagcc
ctgaacagcagagctgggatctgaacaggcgctggagcccacacttgctctgagagagaatttatgtcttcacaatcctcccattgaAAGTCTACAATCC
TGGCCGGGTATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCAGGAGATGAGACCATCCTGGCTAACATGG
TGAAACCCTGTCTGTACTAAAAATACAAAAATTAGCCGGGCTTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGACCTTGCAGTGAGCTGAGATTGCACCACTACACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAAAAGT
CTACAATCCcgtggtttttaatacattgagttgtgagaccatcgtcacaattacattttcatcacccccaaagaaatcgcaaacctctgagcttacacac
acacacacacaccccacccccccacccccaacaggcttccggtcctgagcaaccatgacctggctttgtctctgccgtgtgtcctatttggacttgaacg
tgaatgcagccatacaacacgtagacggttgtgtctgacttcatccacttagtgcgatgttttcaaggctcatccatgctggagcccatgtcagtgcttc
gtttctttttatggcttaaaaatcgtctatggtgggccacgcacggtggctctcgcctgtaatcccaacactgggaggccgaggcaggcggatcat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
904 chr22 41873843 41874153 RIP_Alu_chr22_041_01 0 - Yb8AC1821 CAAGCATTGTTTGCACCATC AAACTGAGGCTTGCCAAAGA SINE Alu Yb8 atccagggggaattggttctgttaagaaagactacttccctttccttcgaggttcgggggttaaacttttttttagtaaaaaataaagaaacagcctggc
cgacatggtgaaacccatctctactaaaaatataaaaattagccaggctgaggcaggagaatcacttcaactctggaggcggaggttgcagtgagcccag
ctggagccactgcactccagcctgggcaatggagcgagacaccgtctcaaaaaatatatatataaataaaaataagaaattaagaatgacttccctagtg
gtctagtggttaaaaaaaaaaataaaaaagactaccgttttaaacagagagcacatccaagcattgtttgcaccatcaaaagtAAAGAAAACACAAATAA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAACACAAATAAgccaggaacagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggaggatcgcttgagcccag
gagttctgcaggagactgcagtgagctatgattgcatcactgcactccagcctgcataccagagtgagaccctgtctcaaacaaacaaacaaaaacaaga
aaggaaggaaggaaggggaagaaagaaaaaaagagaaagagaaaggaaagaaggaaggaaggaaagaaagaaagaaagagaaagaagaaagagaaagaag
gggtgggaaggggaggggagggagggaggaaggaaggacggaagaaaggaagaaagcaagctaaagtgaaaagtaggctccctccctgcgagcccaagcc
cctcacccca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 998 671 NA intron
962 chr22 49534175 49534310 RIP_Alu_chr22_049_01 0 + Yb8NBC126 AAAATGTCCCCTTTGTCCTTC CCTACGCAGAAACACCCTAGA SINE Alu Yb8 aggcacacagcttttcctctatagtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaa
gttttcatctacatgcatatcatttcttatggtttccaattaatcattccctcactatttttgggaaagacacaggatagtgggctctgttagagtagat
agctagctagacatgaacaggagggggagctcctggaaaagggaaagtctgtgaaggctcacctggagggaccaccaaaaatgcacatattagtagcatc
tctagtgctggagtggatgggcacttgtcaattgtggttaggagggagaagaggtacctacgcagaaacaccctagaacttctcttaaggTGCCCCAATC
GGATGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTCTTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCATTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGATGCCCCAATCatcattcactctgcaataaaaatgtcagaatattgctagctacatgctgataagaaggacaaaggggacatttttaagag
aaacctggcaccataagtacagattagggcagagaaagacattcaaaagaggcagctgcagtagatacaaacgtgaccgctgtcagcctgcctggtatgg
cgggaaggaggctggtgccagagtggattcggatt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 438 118 NA intergenic
587 chr3 377928 377929 RIP_Alu_chr3_000_02 0 + pAlu3-133142108 NA NA SINE Alu Ya5 gttttttgttcttgcgatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagt
attccatggtgtatatgtgccacattttcttaatccagtctatcatagatggacatttgggttggttccaagtctttgctattgtgaataatgccgcaaa
aaacatacgtgtgcaggtgtctttatagcagcatgatttatctttgacaaacctgagaaaaacaagcaatggggaaaggaatccctatttaataaatggt
gctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatggattaAAGACTTAAACGT
GGCCGGACACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGACTTAAACGTtagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaa
ggacttcatgtctaaaacaccagaagcaatggcaacaaaagacaaaattgacaaatgggatctaattaaaccaaagagcttctgcacagcaaaggaaact
accatcagagtgaacaggcaacctacaaaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaac
aaatttacaagaaattgtactttcaaaaatgtattgaattgggatacttctataattcaaaacagacaccataatattctgctgttttctgtttgtattc
gtatgactaggacataga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
589 chr3 636725 637017 RIP_Alu_chr3_000_01 0 + 238103 NA NA SINE Alu Yb3a2 agggaatctggcagcagactgccttagacttgagctgcaacgttcattctttcctgggtctccagcttgctggtctatcctgcagattttggacttacta
gcctccacaatcacataagccaatttcttaaaataaatctatttctctctctctctgtctctttctccatccattcatccattcatccgtctacacattt
tttattgtttatttttctctggagaatcttgacggatacaccatctgtttatcaatcattcttgaaacagaaaattctacctgtgtatgcaccttgactg
gaaagagtttttgccaagtctgtactgtacctagttaaggcatatttagaaacatggccgtgggaaaacaaaaaacagcaagattAAAACATGGAGATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGCGCCTGTAGTCCCAGTTACTCGGGAGGCTGAGGCAGAAGAATGGCCTG
AACCCGGGAGGCGGAACTTGCAGTGAGCCAAGATAGTGCCACTACACTCCGGCCTGGGTGAAAGAACAAGACTCGGTCTCAAAAAAAAAGAAAAAACATG
GAGATATattatatatcctaattctacaaggatgtttctggctttacttatgtgtgtattaaggtttttcttctcttcttccacactattttcttatagt
tgacatatggtaatatagtaagaaaaaatacacatatatttcttcttgcaatatatattcattgggatgtttaacactgagtgtcaacctgattggattg
aaggatgcaaagtattgatcctggggtgtgtctgtgagggtgttgccaaagagattaacatttgagtcagtgggctgggaaaggcagacccaccctcaat
gtgggtgggcacaatctaatcagctgccagtgtggccagaatataaagcaggcagaaaaacgtgaaaaggctagactggcttagcctcccat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA promoter
596 chr3 1476420 1476421 RIP_Alu_chr3_001_02 0 - pAlu3-132274989 NA NA SINE Alu Yb7 tcatgtctaaaacaccaaaagcaatgacaacaaaagccaaaactgacaaatgggatctaattaagctaaagagcttctgcacagaaaaagaaaccaccat
cagagtgaacaggcaacctacagaatgggagaagatatttgtaatctaccctctgaccaagggctaatatccagaatctacaaacaccttaaacaaattt
acaagaaaaaatcaaacgaccccatcaaaaagtgggcgaaggatatgaacagacacttttcaaaacaagacatttatgcagccaacagacacatgaaaaa
atgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaAAGTCAGGAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGTCAGGAAACaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttc
aaccattgtggaagtcagtgtggcgattcctcagggatctagaactggaaataccatttgacccagccatcccattactgggtatatacccaaaggacta
taaatcatgctgctataaagacacatgcacacgtatgtttattgcggcgttattcacaatagcaaagacttggaaccaacccaaatgtccaacaacgata
gactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgaagagttcatgtcctttgtagggacatggatgaaattgg
aaatcatcattctcagta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
597 chr3 1581422 1581423 RIP_Alu_chr3_001_01 0 + 239286 NA NA SINE Alu Ya4 tgtgaactaggaaagtgtgacctccttttggaggtgaaacagatatacagattacatgactcgtaaaaggtctaatggtggatctggaactatctggctt
ctacttccttcttcattgtcatcctcatcatctatgcttcaggatttgggtatctgtagaaacttcaggtggatttttcctattttcttatgtgagctgt
gctgaagtttctacctttgcctatagcagagtcatttgaataacaccacacagcgctcctcctctaactacctttgattgaacaccattggtgctttgac
ccattgtacatgggggtcagcccaagttaattggcaattccaaaccaccattctctgttgagctaataggaacaaaaggatctAGAAATTAGTGCCATAA
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATAA
AATAAAATAAAATAAAATAAAATAAAAGAAATTAGTGCCATAAaggcaacctggctgttttagaaatttctcccttggtaactgccttctcaccatattt
cattagctttaaatttgcagactatgaaagatgaagttttaccaactgaaaacacatctaggaaatttttccatgctcatgggtaggaagaatcaatatc
gtgaaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgcctttcttcacagaattggaaaaaactactttaa
agttcatatggaaccaaaaaagagcccgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatacta
caaggctacagtaaccaaaacagcat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
602 chr3 2286630 2286932 RIP_Alu_chr3_002_02 0 - Yb8NBC405 GCCCATCCCCTATTATAGCC ACCAAACCCCCATGACACTA SINE Alu Yb8 cccccctccttgtcatcatgtctgtaagcatgtagccacagagcatattaacagatattttaggcaatttgcaaaatctctctgagaatgaaggaaagta
gggccccacaggtcataacaagtactcctgtccattcccacacttaaagccaagtgatgtattaacataaggcaatcccatatatatatataccctctgt
gcctctaactgtctaagaacaacctcattcccccccttccccaatgtacacactttaaactggctatcaggtactaggcttagtacctgggtgacaaaat
aatctgtacaccaaacccccatgacactaatttacctatataacaaacctgtatatatgtcgttgaacctaaaataaaagttaaagTAAATAAATAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAATA
AATAAATAAATAAATAaataaataaataaataaacaaacaaacaaacaaactggctataataggggatgggcggggggtggtggcaactactagtcctga
atgcaaagctctactacaaactatctttccatctacaaaagtcaatgaactactgagtttcatttcatcgttttttataaataagggtagagactctgta
atccatcaggtctcttttctccaaaatgatagttttaatgtaatcgattacatcacggacatagttatacttaatcaatttcagaaccctgacaaagaaa
ggtgtaattctttgcgggacctcattgtatcatggtctcccaaaccattcctaagtgatttcttaaagcaacttgaaaaggtgacatcaaaatcctgaag
ta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 60 463 155 NA intron
604 chr3 2608041 2608347 RIP_Alu_chr3_002_01 0 - 15487 NA NA SINE Alu Ya5 acaaaaaattttaaaaaactagccaggtgtgttggcatgcacctgtagtcccagcatactagggaggctgagggagggggatgccttgagcccaggagtt
tgaggtttcagtgagctatgattgcactacttactccagcctggtctcacagaacgagaccctgcctcaaaaaataaaaataaataaaaaaataaaaacc
tttcaatgattgcttcttagtctcgactcaaataaagagcagactactacacctggcattcaacacttacttttctttacctcccttacatgagagacaa
gttgggatctcatttttcttcgtttaggcctttcaaaaattcacctcatattttttttcgcttagtttcagaaggctacaattttAAAAAGTCACAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCCGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGTCACAAATCtactagttcttcaaagggcagactacatcaaaagtatctaagcacttgacttgtatttctttaagggactttatcagct
tataatacaaacaattattcatatattcaaaaatttattgaacatctggacaatgtgatcatggagatgtagcaatgaactctacagacacattttctct
tcaaatggagctccagtctagatggtgagatgcacaagcgagttactacaaactgagatgaaagcaattagcaattataaattgtaagaaatattgtgat
ggtctaggcactgtttccaacttggaaaataacaaggatcctccacaaagggacctcctggagtgatgcattatttcgaatattgatgatgatttcacag
ttatat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
614 chr3 3848217 3848533 RIP_Alu_chr3_003_01 0 + pAlu3-3864962 NA NA SINE Alu Yb7 aactggcagcctctcagttcacttgataaatgggccggagtaacacaccccaacgaggaatgtgttgcctccaagatccaaataggcccactaggcattc
tgcctctttcttggttgtaggaggggccaaatacagcaacttatccttcaccttaggagtatctcaccaggccccacaccactggacccctaaaaatttt
actgagggggaagattcctgaattttagtcagatttatttctcatcctctggcacgcaaatgtctcaccaataagtccattgtgtttgctacttcttgct
cagtggatccaatcagcatactgtcatcaacgtaatggaccattgtgatattttgcggaagcaaaaatgattaaggtctctctgaatAAGACTATGACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGACTATGACACaaagctggagagttgatatacccctggggtaggacagtaaaggtatattgctgtccttgccagctgatggc
aaattgcttctgatgggccttatggacagaaatggagaaaaaggcatttgccatgtcaatggctgcataccaggtaccaggagacgtgttaatttgctca
agcaatgaaaccacatctgctgcaattggagtcacgacttagttaagctcatgataatctgctgtcattctccaagatgcatctgtcttctgcacaggcc
aaatgggagagttgaatggggttgtggtaggaatcactacccctccgtctttcaagtccttggtggtggcactaatctctgcaattgctccaggatgcaa
tattgtttttgattta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
616 chr3 4180145 4180146 RIP_Alu_chr3_004_01 0 + pAlu3-4197006 NA NA SINE Alu Ya5 atcaaaaatgtacaaatgtctgatgtaaagtcattgggtgttgaactaagcagcagcctgaaaaaaaaaatcactgtctactgctacacctaggaaatgt
agcctccactcttctcccggtagactgctagggtttccgggtcactgcactttgcctattgaagagaagagaaacaaaaacactccaacaaccaattatc
tctccttgtttttattgtaccaaagcagacttaatctccttgcccctttttaaccttccttttcatgcagatgagagagagagagagacagagagagaga
gaaaggaaggaaggaaggaagggagggagggagggagggagggagggagggagggaggatgggaatttataaagactttataaagatgtAAGAAAATCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAATCTCtccaatgtatctctcaaagacctattacaggatctttcttctatctctttgttgatattctggttttcttgtactgacatcca
ggatactgtccttggacccactttctcagacatttctgtaaaggaacagtcttccagctcctttgtatgagaggaaattgaagcctatgaaaggtaagtg
ccatgctcaaggtctagagtgagtggggcagagttaaaacaacatctgggtttcctaactgccactccctgttctttcaattttaccagtccacatcata
aagggagatcaagatgtattgttaggtttgaacctgtttcttaatttccaacatcagtcttctaatagacagccatcatcttatatttttctatgaatta
ccttgg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
625 chr3 5250621 5250927 RIP_Alu_chr3_005_01 0 + Yb8GK644 GCCTAGCATGAGCTTCCTTT GCAAGCTTGTCAGAGAATCG SINE Alu Yb8 cagcctagttgattcttaagatgattgcaagcttgtcagagaatcgcagccaggggatccaaacaagttgctcctgagttcctaacacacggcaactgtg
acataatcagtggtgctgttctaagctgcgaagttcgtgggtaatttgctgccctgcagtggataactagcacgaagagttctgggaggtggaaacagac
aaagcctgtattgtgcttctataaaacttactattataaggaaatcattttcccaggccattaaaaactagtcataaatatgatttttcatgaatgaatc
ataatttatttagctattctcctatgattggctatcctgattgccgtctttattttctgtgatgaataatgctaccaagatttgtatataaactgatCCA
GGCCGGGTACGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AATTAGCCAggtgttgtggtgagcacctatagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggaggctgcagtgagca
gtgatcatgccactgcactccagcctgggtgacagagggagactccgtctcaaaaaaaaaaaaaaaaattaattaataaaggaagctcatgctaggccag
gcatggtggctcatgcctgtgattccagcactttgggtggctgaggcaggtggatggcttgaggtcaggcatttgagatcagcctggctaatatggtgaa
actgtgtctctactaaaaatataaaaattagccgggcatggtggcacatgcctgtaatcccagctactcaagaggctgaggcaggagactcacttgagcc
taggag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 870 561 NA intergenic
635 chr3 6654968 6654969 RIP_Alu_chr3_006_01 0 - Yb8NBC406 CCTTGGGCAAAGCTGTTTTA TCCTCCCTCAAACATCAGAAA SINE Alu Yb8 gtgcatgcatgaatttatttctgaattctatatcctgttccacgggtccgggtgtctgtttttgtgccacgtaacatgctgtcctgtttactttgtggaa
tattttgatgtccagtactgtaatgcctgcagctttggtcattctgcgcaagcctgctttgcctatccagggtcttttgcgtcttcaaataagtaccaag
gtcctagaaattttgtaatccacattctcattttctcccttctttccttcggcccttcttctgttttcttccccatttcctccctcaaacatcagaaaaa
tgtactggaggatgtttggttagaaaaaaaaaaaaaacaaaatggtgaaagtagttttctgtaaatgaattggttattgttgtttcaccttAAAAATGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATGTAaaaagtgagaattaaagatgtaaaacagctttgcccaaggaatacagaactactaagcctgggtggtgccatgcc
gtgtttcttcctgcctacccactgaatttaatcctccaattcctcaattgtaaaaggatgatctttctgatctcttcaaacgctgatataaccaagtcca
gtctgataggtttgtatgattttcatattctcaccacgaaaaagtgtgtcaagtaagttaataaggtaattgaattatgttaatagaactatcaggtctt
taatgtgtatgtatgtgaaaacaagtttgaattgaaatgaattcttttaaataaatgagcagatataaaaatacttccttcagtcatttatttattcact
tgccatgtatttattg Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 488 153 NA intergenic
664 chr3 10372475 10372805 RIP_Alu_chr3_010_01 0 + pAlu3-10389221 NA NA SINE Alu Yc1 ggtgagccaacaggagagagcgtggcccatgtggatgccctgactgaaggaagtgagggaagatgggagggtaagtcttccagtcaactatcgctctctc
tggggacgtcagagcttgggagggacccaaggggcacctgggctgacctcccatttcatagctgagaacactgaggctcagagagggaagtggctcgtta
gcggcaaagtcggggttgggggttggctccaggcccccctttcccagagtctgtgcctgcagctaacttctctggatgaccatgctgtcaacagaaaatg
ccaggaacccagctctgccccctcaggccctgggcatggggagctctcatccttgtcctcgtctgctcatcctcttgacttAGAACTACTTGTCCTTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTACTTGTCCTTTCCtttgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggca
accaggcaaaggccctgaggcagggaggcagaaaacctgttctaatctgggttcactcagccactttgggcacatcactgtccccctttgggcttcggtg
ttttcttctggaaattggggtttgtgcgggaaggtgtttggactagatcagtcactcaaacctcaagtcatgccctgttagtgacgtgaaatttgtttag
tgggtggtgaccaacattttaaaaaagaaacaaagaaatagaagaacagaaaataggtaagtgcatcccattattttgtgaaattcttgctttggtgaaa
tgtgtgtgtttactgagtcatgacataaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
701 chr3 15269347 15269348 RIP_Alu_chr3_015_01 0 + 17005 NA NA SINE Alu Ya5 acactaatgagatttcactttggtaaatacttcatgctttcagttttagcctattaattttaggtggacaaatttaacaagttttctgttactttttaaa
aagaaaaaatccagaacataagaactatattatgaacacatgatttgaacctgttgtggtaaagatcttgtacaggatgcaaactaaaaacctaatccct
gccatcaaatttattagaagagacctatatatgaacaacttaaaggcactgatttctataatagagctctaaaaacatgccaccagtgtatgaataaggg
aaagattaattttggctggaccaatataaaaaattgtatttgaagaattgatactttaacttggaccttgaaggtaaagcttcaaAAAAGACAGGTTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATAGAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGACAGGTTACTtatgtacccaatgtgtatatttttctttttaatcttcccaatagctgaataaagtatagatactattatttgtacttcttac
aattgaggaaataagcctaagagattaaaagattttgcccagggttcacaagccttcttccctgagccctgattgagctgctgtgtgtgtctaatggcac
ccacagtcacggccgtctagtcgagggagggacaagatctagacccattgtagagggaggaaaaacaatccaggccttttggaggttctaaataacagac
agaccagttgaattgttagagaggatgactcaagtttctaattcagcacatggacagatgctcatagcttcagtgaaaggtaagttttgacacattaaat
tgc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA exon
720 chr3 17706704 17707011 RIP_Alu_chr3_017_02 0 - Ya5ACA1002 GGGGTTGGAGAACCCTGTTA AAGGAGTAGATTGTGATGGCCT SINE Alu Ya5 ctagctttacgtactgctggaaagcagtgtccctgtctatctacaatttagtcttataaagcagcagtcccccctttttggcaccagggaccagttttgt
ggaagacagtttttccatggatgggggtggagatatggttttcggatgaaactgttccaccttagatcaccaggcattagattctcataaggagcacgca
acctagatcgctcacatgtacagttcacaaaagggttagcagtcttatgagaatctaatgccactgctgttctgacaggaggcagagctcaggtggtaat
gtgagcaatggggagcagctgtaaatacagatgaagctttgcttgcttgtctgtggccccaggggttggagaaccctgttatAAAATATGGCTATTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATATGGCTATTTTTAtgcttcagttctcttatattcttattataatggttatttttccatatttctttggtttgtcattcttgtataggc
catcacaatctactccttgttatgttttctagtcttgtttcccactgtttttttgttggccatgttatgacttattaaagcatcatgtattatagcaaca
attcttttattcatatccttttatactgattaaatgctatctcttctttttcgctcatactggtccttctagcactgttgacgttttgggctgaataact
gattttttgggggggaggggtcctatcctgtttgttgtatgtttaggtatgtttagggatgataggtttaggtatgttcagctgcatccctggccactac
tcaccag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 457 132 NA intron
721 chr3 17923557 17923862 RIP_Alu_chr3_017_01 0 + Ya5ACA1003 AGGGTCATCGTCAGGACAAG TAGAGGCCCATTCCACAGTC SINE Alu Ya5 agcccagcttagaccaagtgtccctgggctgagctgcagatctctgaaaataaatgaatgtaggtttaatccactgacatttcgggtagtttctttggta
gcatttttgtcgcaatacataggtagactggggtcaacatctgatctctaaaactcaccagctgtgtttttgagctatacccacccttttggatggtact
cttacatttaaatggggcaagtagtatttatctttagggtcatcgtcaggacaagaaattatacatgtaaaatgctgagcttggggcctctatttgtcca
tttgcattgctataaaggaatacctgagactgggtaatgtataaagaaaagacgtttatttggctcacagttctgtaggctgtatAAGAAGTATGGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAGTATGGTGTCagcatctgctcctggtgagggcttcaggaagctttcactcatggtagaaggggaagtggagccagtgtgggcagatcaca
gggggagagagggaagaagaaagagaggagggaggagtgtcagactcttttaaacaaccagctattgctggaaagaatagagcaagaactcactcattca
tcatttcgagaatggcaacaagccattcatgtgggatccacctttcatgatccaagcacctcctactaggccccacctccaatattggggggtcaaattt
caacatgagatttagaggggacaaatatctaaaccatcaggcccttgaagtttctgctatagcacctggcccatgcgcccaatgtgtgttgggtgcgtga
ataga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 957 637 NA intergenic
727 chr3 18730834 18731131 RIP_Alu_chr3_018_01 0 - pAlu3-18606299 NA NA SINE Alu Ya5 tgtaagctgtgacctaagaaagggaaggatctagctatgcaaagtctggttacaagtagaggaaagaacagagtaaaagtccgtaggatgggaaggagct
tggtgtgttcctgtaactaataagagctggagcataagtgaggcaatatggacaggagttagatcatactgggtcttgtaggctgtggttagatatttgt
attttaccccgaacacaatgggaagtcattgtaagcttttagcaagaaataaaattatctaatttcaattttttaaagaaaatcactttgccaatgtcta
gagaaggaattggtatggaaagagtcaaatcagagatattagctgggaggctgttgtggtattctggggagagaagatggtctgaaatAAGAAGGTGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAGGTGACAgcagagatcagtataaaattttggatcagatgcatatgtttggaggcagaatcaatgacttgaatttggtaagttgggggaaaagaggaat
catggacaattgctagatttctggcttaagtaattgaatgaatagttgaaacttttactgaaatggagaagtggaaaccaggtatggtagtaaaagttca
agagttctatttgggacatgttcagttggtaacgttagtatgtcatcaaataggcaaggcttccactcaagctgtgaaagtacctcaagacttgtaacaa
accaatttacaaatatttcaagtaaaactaatattaaacattccatgactcttggagtccagaaatattatgttggtttttctctgttttttttctt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
730 chr3 19010456 19010457 RIP_Alu_chr3_019_01 0 + pAlu3-18886026 NA NA SINE Alu Yb7 tattatctcatttaattaacaccacaactgtatgaagtaggtacttttatgcttgagaagactgaggtccgtagaaattaaggtatttgtcttgatgtca
ccagaccagcatatgaaggggtcaagatataatctaggcagtctaactccagatttctccctatgaactcttgttaaggtggcatcaagaagcaacacac
tgttgaatttactctactaatccacaataaatcaacttctgtcagtctctaatatgaaatcaaatgataaatgaatatgtgtcacattggaagtaaagat
tatccagtgatcaatccaactcttaccattgacaagagggaggcccaaagcagatgagttcaaatgtgttagtgcttagtaagcttaaaaccaagGTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCNNNNNNNNNNNNNNNNN
NNNNGTCATtgtaatatatgcaaatgtagtgagtatcccaaactgcacatcacatagcaaacactcaaaaaatgatgtgtgtgcatcttccagggaaatt
tgatacagcgaccaaaaaggaagatttggaagagatgttggggcctgatcatttggtgatgaaaagcaaatgaaaaatactgcctggaggccaggttcag
tggcttatgcctgtaattccagcactttggaaggccaaagtgggtggatcacctgagcttaggagttcaagactagcctgggcaacatggtgaaaccccg
tctctactaaaaatgcaaaaaattagccaggtgtgatggagtgcacctgtggtcccagctacttgagaggctaagatgggaggattgcttgagcctggaa
ggtg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
748 chr3 21432512 21432825 RIP_Alu_chr3_021_01 0 - pAlu3-21307204 NA NA SINE Alu Yb7 atcagttatgcgctcttgtcattgttacaggaattatttaaactgagtcctaacagtgaaagttttacctgacttttgctgatttttttttctttctaca
tggggagatttatctctggagcatctcttgtgtttttgtatggtttgcttcagtagctagagaggctactatcaggaagtgaaatggatcatttctaatg
gtaggtctccattgcctacatggtatttctgagagtggtatcagggtgtccagtgaaagacggataggttgacatgtcatgctcatttggcctaaaggtt
gttactgccaggaatggacttacaacttaccagaatgtgaatggtgacaaaaggcaggttctactctggaaaaatatgtgttattttattAGAAGTTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAGTTCATgcaggtcatgaagagtcacagagtttaaagaattctctggttgggtcatcaatgttcagatgtcaagggactgaaca
ttaccttcaatttgagggtcttctctttcctcttctcagtgatggaaactcatccttcctaggtggctaagttgactgtagaaactgctaaaatgtattt
gtcaaacgaagtaaaatctgactattaatatatatgatcaggtagagtatcttagagtttggttaactaagacagccgataatggggtcatgttattttc
agactggcaggtcatctctaaaggcaatttttaaagattagggctaaaatgatttgtgagcaaagaagtataattaaaaataagtaatagtatagtgacg
agttctaaggtta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
760 chr3 23061855 23062138 RIP_Alu_chr3_023_01 0 - Ya5ACA1052 TTTCTTCAGGAGCTCTTTTG CTCAGCAGAAACCCTACAAG SINE Alu Ya5 ctgagtcttggttctttatccagcttgccactctgtgtcttttaattgggccatactatgccccaatactatgcccttttagttggggtatagtattgtt
atgtacgaatttgatcctgttatcatgatgctagctgattactttgcagagttgtttatgtagatgctttatagtgtcactgctctgtgtacttcagtgt
gttttgtaatgaccagtaacagtttttcctttccatatttagtgctttcttcaggagctcttgtgaggcaggcctggtggtaacaaattccctcagcatt
tgcttatctgaaaaggatcttatttttccttcgtttatgaagcatagtttggctggatatgaaattctgagctggaaattctttcctttAAGAATGTTGA
TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAG
CCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC
CCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGTTGAatattg
gcccccaatctcttctggcttgtagggtttctgctgagaggtctgctgttagtctgatgggtgtccctttgtaggtgacctagcctttctctctggctgc
ccttaacagttttttctttcatttcagctttggagaatctgataattatgtgtcttgaggatgatcttctcatggagtatcttactggggttctttgcat
ttcctgaatttgaattttggcctgtctagccaggttggggaagttctcatggatgacatcttgaaatatgttttccaaattggttccattctcccttctc
ttttagctaccccaatcagttgtagatttggtctttttacttaatcccatatttttcagaggttttgttccttcatttttctt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 493 199 NA intergenic
766 chr3 23739077 23739391 RIP_Alu_chr3_023_02 0 + 239048|pAlu3-23613773 NA NA SINE Alu Y ccagcctgggagacagaatgagaccctgcctcaaaaaaaaaaaaaaaaaaaattaaagggtgaggtgctggggaagtctgcagcattgttttccaattgt
taatatgttccattaattttcccaaggtgttcaaaatgagtttctagatgctatgcctacatgcagtgtacaaattacagtgtttaggggaatgttgaca
tttgttatactagttgtgtgacacttctcagtgagtaaactcatctaatcatttgtaaatctcagaactgttgacttctgtattcagaaacaatttattt
attaactctgaaaaatgttcagttgttttcagagaagagttcagtcttatatgtaattattctggagaagagcaacatttctttAAAATGTTTGATACAA
GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAGCACGG
TGAAACCCCTTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGCCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATGTTTGATACAAatatcaaatgattctccaaatatatgttggagaatataatttccctttgaaaatgttttctgaagactgg
aaaattaacttgcataatgtctccatccaacaagtcattaatttacagccttccaaacacgtttgtctgaatcttaaaagtaactggttaactttcattt
ttcctctcataactgtgacaaaatccctactcgtggctaccaatggctggaggatgcacttcatacatttctcagagtctacatgtatttagatctacac
agaaaaattgaaagatcccaaattttatttccgtgtaataccacaaagcttcttttgggtgaaacagtgctttttctggtggtcctcttgtaagtgcaaa
tttgcctgagagac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
789 chr3 26761723 26762030 RIP_Alu_chr3_026_01 0 + pAlu3-26636419 NA NA SINE Alu Y tctgtgaatggataaggctaggagttgggcaggtggtgaacgctgggatgcctagtgcccaactgcaaagaaaaagaaggcttttccctgcccagaatca
ccttctcaggaaagccttcagtagctcttaaaggcagaactcactttagctttttatctatttgcactggggcactgtgttctcctgtatccctagctcc
aatgttaggcagggtcagggtagtaagtggcaattttgtgtctggacctaatgtatatggtggctcttgctacatagtgaaaatagtaattcctactttc
ctttctttaacagcagtctatattgagcacactgtatggcctcctcgctgtagtgagaagaaaacaatggccagcttaaaagcaataAAGAAGGGACCGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAGGGACCGGagcaggaagtaaaaagggagagtctgttctgtttagaaaagcacataaattctttgtagattctggatattagccctttg
tcagatgagtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgtagaagctctttagtttaatta
gatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggtt
ttcttctagggtttttatggttttaggtctaacatttacatctttaatccatcttgaattattttttgtataatgtgtaaggaagggatccagtttcagc
tttctac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
826 chr3 31694296 31694602 RIP_Alu_chr3_031_01 0 + Yb8AC1152 GCCTGCTGCCTATGAGAAAC CTTTTAGCCCTCTGTCCCCT SINE Alu Yb8 ggccatgcccaggcccacccacagcaggaaaacatcaggtgagtggccaggaagggccatgtccaggagaggcctttcacagtctctctccagaatcttc
tttctgaactcagcatgctattgagaaattctgagtggcattttcaagcagttagaaaaagtgagagcaacaaattctaattctgcttcatctgcaggct
gcatctgagggcctcaggagagggtgttccacggcttctcacccacgacactgtggtcctgggctgggtaaagtgaatcaagggctccagcctctgcctg
ctgcctatgagaaacagaggagctatgatcctgagacctcacaggcctaccctgtggagacacggacactcaacaacggccaacatAAGACAGAGCAAAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAGACAGAGCAAAGatgttggttagttcaggggacagagggctaaaaggacctcatcactctctcaagttcagctgcagaggcaatgacaggag
gccatgtgctgtgctgggctgaggggtgccccgttgacggtgtggcttaagtgaaacggctagagacaccagagggagacaggaaggacaagggtgcagg
gaagcagagggaagaagatgatgatgaacatgctgtgtagagggaagaagggaaagatgaacacattgtgtggggaagagagaataaccagctttaaaac
acaatcacacacgtgacaccactgcacagccacctccttgtcggagcccaccgctggtggtcggggacaggggaaaagtgactgctatttggtagagaag
gaagga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 459 139 NA intron
828 chr3 31856402 31856403 RIP_Alu_chr3_031_02 0 + pAlu3-31728001 NA NA SINE Alu Yb7 gatagaaaaaaagaaaaaaaacttgaggaggctttccaattttaggtaggtggccagagaacgcttcatgagaaggtaacatttgattaaagatgtcaac
gaagtaaaggagtgagccaggctatctgggtaagagcattctacatagaatctcaacagagcacaaaggccctggggtgagagttcacttggtgtgtttg
agcaagatggacagtgtggcagaggtggaagtgagcaaagcatagagcaatatggagttgaggtcaacaggttagggatgggagagactagttcctgaat
tagaaattacagacaacagccaggcaagccagatgcctggtaccacctaaggctcatgcagacacagagaatgacaagcaaattAGAAGAATGGGTTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAGAATGGGTTTCAataagctttctcctcagggtcatagtcaggtattaaattgttatttgcatacaatttacttaggtctacatg
gaatggatcatttcaactggataattttcatcataaaattatattactactgccctgaagatgggcttttcatgatttattctatgctctatttcttctc
acgtctcattgtaatcgacccagaagatactttatgccagtaatgaatcatagaacaaaaggcgagtgcgtgctgaggaattctataaatgatcactctg
gaacatggggacaagggctcctattttatatttaaacatctgtctcctaccagtgggtcaaaccagccatgggatgggaagtccaatgtcattctgagaa
catttcaagaag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
830 chr3 32178878 32179147 RIP_Alu_chr3_032_01 0 - pAlu3-32050375 NA NA SINE Alu Yb9 gcgtggtggctcatgcctgtaatccagcactttgggaagccaaggtgggcagattgcttgaggccaggagttcgagaccagcctgggcaacgtggtaaaa
accagtctctactaaaaatgcaaaaattagctgggtataggggcacacgcctgtaatcccagctactggagaggctgaggcaagagaattacttaaacat
gggaggcggagattgcagtgctgagattgcaccattgcactccagcctgggtgacagagtgagacccaggagcttgcaacatgcacctcagagaacatgt
tgtgtacgggctgaattgtgccctcctcccaattaatatgcttaggtcctaacccctagtatctcagaatgtgacacggtctttgaaAAGGTAATTAAGG
GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAG
ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAAAGGTAATTAAGGtaaaatgagaggcaaaga
aaagttccattcaagaaaagacggtaccatagggagtaagaggatgtactgcaggaagttacattggtgctagattgaggggggccacatctgcctaagg
accatgtgcttcactctataagagcaggaggcctctgaatgtgaatgctcaagctggtagggaccatggtgttcatctggtcttccatcttaattttgtg
gataagaacaccggggcacagaacagctaaatacgtgacttgcccaaggccacagggctaataagccacagggcagccttgaatgctgccctcctgctat
tttttctatagcaatggagaagagaagggagggagaaggaaacagaggaagaccggagtagtggtggtc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
852 chr3 35026675 35026989 RIP_Alu_chr3_035_01 0 - 239280|pAlu3-34898171 NA NA SINE Alu Yb8 acagaatacaaattagcttgatggggactctttatgccctttgactggtgcagagggcattcagtgaaggtgacttgaaacttgaaggccttactgtttt
ccagaagaaggttgataaacagctcatggagcccgaaggtgttagtgtaattcacctacaactcttgtcagggcaggtacctcagaggaacagcataatc
aggggagtacctactacagagttcagcagaagaggagagagaaatagattctctgtgacaaatatattataaattgaaattctgtatgagagcatttgaa
gttaaagcttaagtactattttttaaattgctcgaaaaatatctaaatcctgtacttgttaatcttctttgtgtatttagggaaatAAAGAATTTAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAATTTAAATAtaccttctttaaatacctcgaaaaacatcttcccataggctgaaaattgcctaatatattttttgatttttt
aaaaaaaaattattctcaaaaatatctattgagggctttccgtgtatcagacactcttctggatgctgagaagacttcagaatacaatgcatccaaagac
catggcttcatggagtttagattgtagaatagcttgacaagcagtaaacataacaaatgaataaataaattatatagtatgttagaagatagtaattact
atgggaaaacaaatatagagaaaagttaggaaaatccaaagtttgggatgatgattgaaatttaaacaggataaaaagtaaatttgataattgatttgaa
gggtgcaaggagat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
891 chr3 40216626 40216627 RIP_Alu_chr3_040_01 0 - Ya5-MLS26 GGTGTGACCAAATACCCCTCAG ATACCCTGACCTAGTGTACCCATTAG SINE Alu Ya5 ccttaatatccaacagactcctatttaaaaatcctatatagagaggctccagacaggctcccaatactccccaagattgaatataaaactttgttggatt
tatgcacatttttttcctccctagagagaagacctagagcaagcttattcaacccgtgccccatgtggcccaagaggactttgaattgagcccaacacaa
attcataaactttcttaaaacataacaaaatttttttttgcgatttttcttttagctcatcagctatcgttagcatattatgtgtgacccaagacaattc
ttcttcttccactgtggcccagggaagccaaaagattggataccctgacctagtgtacccattaggtcctcaaaagggcctatgatAAAAAGAAAATGTA
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAATGTAagaggcacaatttttcagcaaatgcctcattttctagacatgttctctgcaacgagtttatcttggaaggcac
ttctagcaattctttttctccaggggtatcagttgacagacatgtgactaagatttttcttctgaggggtatttggtcacacctgctctaaagtccttcc
aggctattgtttgtgcttgctgggctgctgtggacgtggaggtaagtggcgaggaatgggggagcaactgtgcctcagagcagctctgctttcagccata
ttatgatttgtcttctctttatttttatttttgtgggagatacaacctttggtacaagtgaaagtgcactctgctgccttccctttagatttcatttaag
ggaatcctctatg Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
913 chr3 43006110 43006424 RIP_Alu_chr3_043_01 0 - 315|pAlu3-42850242 NA NA SINE Alu Ya5 acccaggctggaatgcagtgacatgatcatagctcactgcaccctcgacctcctgggcccaagcaatcctcccacctcagcctcttaagtagctgggact
ataggcacacacctttttaaacttttgtagagatagggtctctctctacataagtttatgttgcccaacatagacaaaagtctatgttgcccaggctggt
cttgaactcctgaaccaagggatcctccctcctcagcctcccaaagtgctggaattacaagcatgagccaccacacctggccctgcacagggactcttga
ccatgcagacctcccagcaggtgcacctgtctatgctgtgagtctaacgctgggagcaccacacagagactcctccaaagagacccAAAAGAAAGCAGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAGCAGGTaggattttccatgataaacaggtattgctcttacaatttacaaaagacagagataaaacaatagagttgcaa
aaccctaacaggcccaaaaggaaaattgaggaaaacattcccctataattaggtcaggaaaagaagcagtgacaatattcaaaagaacaagtttctaaga
atcctacctcaactctacattcaccaaaaagaaagatcaacggcattctgaaccctaaaagggaagtccagacagacagaatgggacacctagaaggaag
agattgcacagacctggagacagaaagcaaatgtgaggacccaccccatccattaatgcaccttttcccaggctctgtaggaaatgtgttccttgctcct
ccctgcaaccctct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
953 chr3 48347330 48347331 RIP_Alu_chr3_048_01 0 + pAlu3-48191559 NA NA SINE Alu Yb7 tgaacccaagaggcagaggttgcagtaagccgagatcgcgccactgcactctagcttgggagacagagcaaaactgtctttttgtttttcagttgcaaga
tttaatagagtggaaacagagctcccatatgatgggaagagacccaaagggggttgccactccctgcttgaatgcctgggtttatatcccgatcattgtc
cctcccctgtgttctcaggcgatatatgatttgactatttctttacctcctgcttttagcctattttgtattttagtgagccctctttactacctgattg
gtcgggcttgagctgagttacaagcccctgtttaaacgtgggtgcgttcaccttccctagctaggcttacaaattcttagtcagcctAAGAAATCCAGCT
CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAATAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAGAAAAAA
AAAAAAAAAAAAAAAAGAAATCCAGCTagtcctgtctctcagtccccgctctcaacaggaaaacccaagtgctgttggggggattggctgacaactgctc
taactgcttcctgctcaactggggcatagtaggggtcgtgcagttgagatttcctagggaggggtgccttcgatgtcatcaatatcacagcatgggctag
caggccggtccaaggatccctggtagatcttagtcagggactgcatctggggctccatttgaagaacatttgtagttttacagctttgattctggaagag
acaaacttaacaaggaggttaaagatacagggattgaaatgtatggtctgaagttcaggggcatatgggtgtggggctgaaagtggggtttcctttagaa
aaactcctataaga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
962 chr3 49469291 49469609 RIP_Alu_chr3_049_01 0 - pAlu3-49348609|22534|Ya5ACA1134 TCCACCTACCCAAGTTTTGC GACAGCGCTCAGTGATGGTA SINE Alu Ya5 tgctggagacctgtagctttctggaaagaccttccacagagtcccattggcaattttgagcccaaattccacaagcccacacactttcaaggacatgcaa
ggatgtccagcctcctgcaggataaattaagccccaccctcaccctaccctaagcaacagggacctccatgtgagaaggccacatggaggaggagttggt
caagacttaccagtctcctcctctctcctcgacccccatagatactctcacttgtgaaggttcctcttccacctacccaagttttgcccaccccactcaa
gaacaacacccccaagccttcctgacatctgactcctcattgtctaggaaacctcaagcttctagagggcaatgattgcccttgataatAAGTTACCATC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGTTACCATCactgagcgctgtcctatatctttggcacacgatatctcaccatgccttccagcaaccctctgtcacagtta
ttattggccccacgttacagatgagaaaactgaggcccaaaggttaagtcacttactaaaagtcccatagccagtaagtggccaagctatggatctgtgc
ttatctttgtaacctttactgggcctggcccagaataagaattccactaatgcttgctgaatgagtcaatgaatggatacaattccatcaaaactatagc
taccaggacctatccaaccctagggcccaggacacagaggccttggagccatgtaaggggcttccagaccagtccaggaagaacaaggctaggtttctgt
ccctctcccaccttgggc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 60 475 146 NA intergenic
966 chr3 50038024 50038025 RIP_Alu_chr3_050_01 0 - Ya5ACA1071 CTGGGCAACATAGTGACA TCTGTCTGCCACCTAGAAAT SINE Alu Ya5 tgagtagctgggattacaggcgtctgccaccacacccagctaatttttgtatttctagtagagatggggtttcaccatgttggtcaaagttctatactta
atttatcaattagtcttatatatttaaatgataaaatgaaataatgtggtcttaattactgctgtaaccctgatacctacactaggagacatatatacag
agcagggggaatcaatagctgttgaacaactatatgtaggcagcaatcaatgaaaacttgaacagtggggcacagtggctcacgcctatattcccaacac
tttgggagactgaagcaggaggacggcttaaggccaggagttcccaaccagcctgggcaacatagtgacaccctgtctcttaaaaaaaaaaaaaaTTAAA
NNNNNNNNNNTTAAAgttgtatatatataaaaggttaaatttctaggtggcagacagaagatacatagaaaatccaacaagcacattcacaggtaggtat
atattaacaggaataagtgcatctacctattcgccaagagaaataacaattccgtggtgttttgttttcttttttgagatagagtctcgctctgtcaccc
aggctggagtgcagtggtgtgatctcagctcactgcaacctctacctcctgggttcaagtgattatcctgcctcagcctcctgtgtagctgggattacag
gtgcccatcaccacacctggctaatttttgtatttttagaaaagacggggtttcgccatgttagccaggctggtcttgcttctgacctcaggtgatctgc
ccacctcagt Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening precise insertion position unknown 60 366 75 NA intron
1035 chr3 59100273 59100589 RIP_Alu_chr3_059_01 0 + Ya5ACA1054|pAlu3-58979974 ACATTCTCATCTGGGGCAAG GCTGCTAACAGGAATCACTGC SINE Alu Ya5 gttatagattgacaaaaagacacacacacacacacacacacacacacacaggcgcgcgcgcgcgcacacacacacacagccagtgcctgatttaaataga
gaaggacatagaaactaattggaagtaggatggccacagatatcatggcaaggcttattcatggcccctagttccctgttgaagcacaacaggtcctgca
gactggggcacttctgttataccatgtatctttcatgatcaaagcttacatcatttttccagcagaacttttatttctgtttaagggaaggttgataagc
cttatgcttttcattgtgaatcatatatcatcagcaggccacattctcatctggggcaaggacatagtcacagaacagatgcttctaaaGAAGATCTTTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAGATCTTTGcctccagttgccagtgctctggaaggccaatttccatgcacattgttacttgaatttgcatttttctgactag
cagtgattcctgttagcagcactgtgagaagatcaagttggaccgtttagttgtggaaaattataacgtcaatagttttaggtcttttggcctgctaaaa
ctcttcagggaaagtaaaggctttgtcgccaactttctggtaactgcatgggggaaaaatctggaagtcttaatgtatagtatggatacatttaatgaat
tgttctgttttcagtatgatgccccatcccattctcaactacacttggtgtcctcttattttaccatctccaaaatttaaaaaataagctattttgccag
gataggagagggtatt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 480 153 NA intergenic
1053 chr3 61450100 61450411 RIP_Alu_chr3_061_01 0 - pAlu3-61329867 NA NA SINE Alu Ya4 gaactgtggctgggcacagtagctcatgcccgtaatcccagcactttgggaggccaaggcgggtagaacacctgaggtcaggagtttgagaccagcctgg
ccaacatggtgaaacgctgtctctaattaaaaaaaaaaaaaaattagccggatgtggtggtgggtgcctataatcctagctacctgggaggctgaggcag
gagaattgcttgagcccaggaggcagaggttgcagtgagctgagacggcgctactgcactccagcctgggcaagagagtgagactccgtatataaaaaaa
aaaaaaaaaggaatgtgcacatgtgcactgtgtttggtctcattctcataatacgcttgaattgttccatggacttgatttttttaaaAACATGTAAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAACATGTAAGCTtaaacaacatttaatttttacattagaaaagtgataagaatttatcaaatgataataatgttgatggagtactgaga
gagtttttaataaaaactcaagctcctctttaacctcattcctagtatctaattaccaggtccatccagaagaacagagcaatgcctacagcaatttcaa
cggttctcctgaaacatatggcacatctcacagttatatctatggagtaaatcctcttgcaacagattcaaaaggatcacaccccaagcacagtgcatgg
cacacagtagtggcccatgcatattggttaaatgactaaaagactgtacagtcacacctggttttattaatgttgaaatactttggcaggagatgggccc
aaaagctgtta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1102 chr3 67772614 67772615 RIP_Alu_chr3_067_01 0 + 21484 NA NA SINE Alu Ya5 taatagttcctggcatgtttttaaagaaagctctgtcaaggctttcttctgtgtaatttattgtaatgtacattcgaaaaaaatgtatatgtatcagtaa
tttaccaagcccatactttcatggacactattacttatggaggggctcaaatgtggatttaaatatttttaatagtgaatagatttagaagaaaaatgtg
aagtcaatgatattgatacttaaacatcacaaaaagccctgaagaggtattaccctagatgaggcaccgaagtgttaaaccagttgtccgaggcacaaag
ctagtaagtggcttacatgtcacattagccatggaagagccttgcagcagatgctctcagtgctccatccgcatggcctcagatcgcgccAAAAATGGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATGGTGctgtgcactcttactcccaagagcagccccggcaggtctttgtcttaagatgctgaagacaacatgcccttaaagaacctt
gaagagggtatataaatacttcaactctcttgcccctaactacaactctgaggtgtaacctacacagtttccatagctgtcctgtggaattaagcaaagt
caccctctttgggattcagtttaataacacacccttctcagcctccttcccttcaacttctctaaacccctttgagtttttcctgagaatgcctccccga
aaagccactttcacatgaatccttttctcaggatgtgtgaccagggaacaataagaaaagtcttggggttactatggtccaaggttccccaaacaagaat
cactcatac Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1111 chr3 68953181 68953456 RIP_Alu_chr3_068_02 0 - 17560|pAlu3-68694102 NA NA SINE Alu Ye5 ttaacatgaggctcaataggattgcaaaattaataccggtagagattttctacaggcggtttccattgcagaattaccggagaagcatttgcaaatacct
ttttaagtgatggatttggcagcacagtctttaaatagaagacagagagctgctagttacttatcatggtttaaatatgtcaatattttctcatttttct
ttgaataaaaagtaacataagggtaaaacacctgaaagaagtatagtacttgggaatgcacccttcaggcttcactctttatggcaaggttgaaaatcca
gggtagcagtggtgtttattgccaaggtagtgccttgaagaactcatataattcacaaagcgtatcattcaggacttgttttctcttAAAAAAAAAAAAA
GCACACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGTGGAGCCTGCAGTGAGCC
GAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAagcagggaggtt
gtctacatagtgtataaatctacagccatcatatcttattgttgttttgatgctgtgtttatatcttaggattatctctaatagctgtgagtcctcactg
aaattaacagcgtggtatattttggcagtggttcaaaagttattgatttttggttatgtttttcagcatcactgaatgtatggaagacattattatagaa
tttgtaaaagattttaacctgggagtattggctgttaaaacacacagcacattagtgactaaaatgatttacagaatgcatttccatactactaagtccg
tgggtatttgtacactacatcatttggtaccaccttgtggtacagcataaacacagtttgtaattcctttggttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1111 chr3 68972905 68973185 RIP_Alu_chr3_068_01 0 + Ya5ACA1050 AAGGCTTCCATCTTTCCTCT AAACCACAGGGACTTAATGC SINE Alu Ya5 tatatagaatatagccatggagaaggaataaagccctggtccctcccatatagaaaaagtacagttccacagctggtttagcagtaaactctcttcatgc
atggggaacacttagtgatttgtccttggtagcaccatgtctgccaaagaccacactgggcttactgcgcttgcccatggctagactaaccaaccactct
tgcttcagctactattattttctgtaatactgaactaaatggagtttctttctaaccctggacttaccctatctcacattctgtacctctgctaccaata
cgatagcactataatctgtgcaaaaatctaacatcattaaaaggcttccatctttcctctacaaggctaaatagaaggtgatattaaagAATAAAATCCA
TGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAA
TACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCA
GTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAAAAAAATAAAATCCAcacacattc
tccacaaaacttttaatttgcattaagtccctgtggtttcacaattggctggcactgttcttaccttctttcctgacaggacaaggccacctgacccaca
actaaatcacaatgcgtgactatcaccctacacaattcatacactgtcacctccagttgatttactagaggggtttaagaggaactttttttctgatttt
tttttaattatactttaagttctgggatgcatgtgcgatctgttacataggtttacacgtgccatggtggtttgctgcacccatgaacccatcatctata
ttagatatttctccaatactatccctcccctaccccccaaccccctgacaggcccttgtgtgtgatgttcccctccctgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 399 108 NA intron
1118 chr3 69928336 69928612 RIP_Alu_chr3_069_01 0 - Yb8AC1171 CACAAACATGGTCTTGGTGC TGCTTGAATGCACAGCAGTT SINE Alu Yb8 ttccattcacatgtggcattaaattggcttgaagggagcgaattagaggtataccctctggactaaattatgatacaaatccctgcatactcccattaaa
aataatttataaacttagaatagtagatgttctccttgctaatgtatttagcttatgttagagtcagaaaacctgcaataaaagtctcctataaaatggg
tacagtttctgcaacctttatcacacaaacatggtcttggtgcttctgctttaaccacttaacccctacacatcacttgttggtggcatttgctcaagta
ttttgaaatgtttagtttgttgtcaaggcaatagatatggcctaacaaatcactctgtcccaggttatgtttcatgactatcttAGAAAGACGGTGTTTG
CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACCAAAAATACAAAAAATT
AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGCAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA
TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAGACGGTGTTTGtaagcttc
acaaactgctgtgcattcaagcagctttaaatgttttactacctgcaaaagtatttaggaaattcctcataggcactaaaagaaaaaaaaatcctttcag
attagattcccttttctaaataagaaagaatgctttgccatatttctaaaatgaatacaaactaaacacaatcttcaaaaatagcaacagaggccaggcg
cagtggctcatgcctgtaatcccagcactttaggaggccgaggcaggcagatcacctgaggtcaggaattcaagaccagcctggccaacatgaagaaacc
ctgtctttactaaaaatacaaaaattagctggtgtggtggcacatgcctgtaatccctactactcgggagtctgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 500 208 NA intron
1137 chr3 72462416 72462696 RIP_Alu_chr3_072_01 0 + 899|Ya5ACA1020 AATCGCCTTCACTTTTCTG CAGCAAGGAAAGAGGTAGAA SINE Alu Ya5 agcagtcaaacaggaccccacacttagaaggaccctatgcttagttaatgctcagctgtcaccgacttgaaattctcaatgattttttaacaggggtccc
tgcattctcactttgcactgggccctgcaaatgatgccgcttgtgctgctggagaaccctcctgccctctttgcaagttcctctgatctgcacgctcaac
tagtttctcaatttttcttcctcctgttcagaatcaaggggcactttctttgtattgtgttcacagctgagattcaggttctgaagtcacccaggcttgg
gttccaatcccagctctgccgctttgtagctgtgcactcccaggaatcgccttcacttttctgagcctgcgtttccttgtctgtAAAAACGAAGACAGTA
CCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA
AAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT
GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAAGACAGTAatag
tttctacctctttccttgctgcagggatgaaatatgattttttttctgtgtggcaatcactaaccccaggcccaggtacacagtagatactccactgggg
ctcagttgttactgcgcgtaaagaaagctaagatgtcaagtcagctgagtggaccccaatgtctagaccaatagcatgtgattcccaaggatccccaaaa
gctcagatcctccaagaacaaacccaagaaagccccaggtttcaagctgacgtagggagacagtctttaccttcactctatcatttatcaaatgtgtcca
tagctaatgtcacgttcacatgagccctgtgaaactggcattaaaactgccttcattttatagacgcagaagaacgaacc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 377 81 NA intergenic
1172 chr3 77068573 77068574 RIP_Alu_chr3_077_01 0 + pAlu3-76791503 NA NA SINE Alu Yc1 ttagaaaaacaatgcatgcatcttaaaataaagaaaagccaataaaannnnnnnnnnnnnnnnnnnnatgttaattccaagtgaaattgaaaataatttt
aaatgtgtaaagattttgtatgcagcaacttcaaggcagtaaatgaaaatgtaagggtggacagcgttgctcctccaagtcacggaaggtgtgacctgaa
ggatttatgaggtattaaaagcaaggactgataaattaattatttgtgggagccaacacattacaattaccactaacatgttaaccttagtagggtttct
ttataaatacacatgtctactatatataaatgtttccagatatgtaattgggatcattcttataacactgattgagaaactggttctAAGAATTCATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCTGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGAAAAGA
AAAAAAAAAGAATTCATTTTattcacaacagcagtggatatttttagactacagagtaattgcattttgagtctttaactcaattttactttattacatt
ctgcctttaaccttagttcctttttttaattgaaacacctagttaaatatatacattcttatgaagacatttgtttctgaactggttgttggaaacatta
ttcctagaaaattacttaggatgtcacagagtattaaaatgaagactagcgtctaaattaactagcacattttatgtagtgttcattgattctacaaact
ggtactcattattgacctacctacccctccttatcctcaacctactcacattaattgagtctccattttcttgcttgtacttagtaaacaccacaagtga
aggtggg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1206 chr3 81428772 81429070 RIP_Alu_chr3_081_01 0 + Ya5ACA1024|pAlu3-81151601 GGAAAGGAGCCAGAATAGCC CAAACATCTCTGGGGAGAGC SINE Alu Ya5 aacacttttatgtacacttctattgaagcacatattcttgccctgtgagtgagaaaaggttaacactttattaacttttgacttctttttttcccttcta
aatgtgactgtggaaattggtagtcatgtaggaaatgcaattccagtaccacttgcctagtgagcaaatacggtctgttctgctcccacatgtacacttc
tctaacactgattaccttatacataatcaagactagaaaataatggaagttcacatgcaggtttttctagggaaaggagccagaatagccagagtacaat
tgtaagtttcatcagaagaggaaaaactccttagttcagctgctatactgatagaagcactttcagctgtacttcacgagagtAAAAATGAGTACCTGTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
GACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAATGAGTACCTGTGtgcagggctctccccagagatgtttgctgccagttttgcacagcctccagcttgtggcacgtttctcttgatcctgtgaccccta
aatgggagctccgctggctcagagcacaacttgctctgcatcatcccagtacccgcaagccaggatatacaacctattgttctggcaattttaaaaaaat
tatcctctgtggccatcaccaatcacactcatctgcctgctttgtcatttgtgttatatttccacatacaaattaatattttatttaaaactttagtaac
aaagttaaataggttttgaatccctgcccatttctatttccaataagccgtgttatttttagtgtgcagttttgaagaaaaaaagattatccaataac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 470 156 NA intergenic
1210 chr3 81990197 81990502 RIP_Alu_chr3_081_02 0 + pAlu3-81713027 NA NA SINE Alu Ya5 acaatgcctcatgctttaatcatgaggttagtgtattaaagcaatggttgatttttggctcctcccatatactgtatgacatgatatgctaatatattca
gaaacctaggaatagtttcatttattgctagtggtaatggccaataatcaaggcataacttcataataagaaattcactttcagaatgaaaacacatcta
aaataagaagttttaaattttctaattgttgtcctctcctgcagatgatagttaaactattttgtcagctatgatttataagtacagtactcattatgtt
cctattcctttatattttactatattctttttacctttctcaaatgggacatttcctcaagataatgtatataattattctcattAAAAACTGGTAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAACTGGTAAACCtagagaaaatactctgtattttattacttagcaagtctttaccaaacaggtgatttttgaaaacatttaatactcttgta
ataattaaagcctttttgtttcattccaataacatttcttaacatttctctccaggtgagtacattttgtgtttttaagctaaaaaaatgcaacacggcc
tgccatatatcatatttgttattaaatggctcaaaattttaattatatttttatgttggaatgcaagcatgtattgcagaaatctgaggtcacttttaaa
gttcaagagacttttcagaatggtaaaatgaatataaactttaaaagaaatgtcaatgttattcgatacaattactgttaaaaatgaaatagttaaggat
aacat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1253 chr3 87603171 87603172 RIP_Alu_chr3_087_01 0 + pAlu3-87400471 NA NA SINE Alu Ya5a2 caaaataacttggaagaataaaatgtggcataaaatcttaacatagctgagagttttaagttattctgtagaggagggtgaggaaaaaaaacagttttgg
aaaattaccataaaacattgaaagtaaaataaggaatgtttttgatatagcttcaaggaataatcacatgtttttacttacagtaagatttcataaattc
ttatttcattacaatactgtattttattaaaaaaactgaacaccacacaaatatctgtaacttaaaaaatattcgttgttacccgagctttagtactata
atatttagcaaaaaaaaaaaaatgactatagctgatgactttatgtcattagctacccctgaagttgctgaaaaaatgaagtgttAAGAGATAAAGTTGG
TTGGGAAGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCT
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAGATAAAGTTGGaatttggtagaagactcca
ggaataaaggtattttttttgtggcggggaggggatatctgtcagatctctatagtgcagagaattttacagaggtgacctgacactcttttccatcaaa
gcaatgagtggcaaactctctcagctggatatctggactttgtgagtctttatcttcaccaatataaaatctatcatgtagtcaaattatgatattattt
taatattttagtgccagaagactgatgcatatttacaaactaagtcagctggctgaattacacaacagaattttataattttaaaagaaagaaaggaaaa
ggcactataggcaataaaacactatgaagttgtggtcaaaataattaagtcacttgtactgtgttc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1261 chr3 88692357 88692358 RIP_Alu_chr3_088_01 0 + 22109 NA NA SINE Alu Yb8 acagctaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcgtaagacagggatgccctctctcaccactcctattcaacatag
tgttggaagcatttttttctttgtcgtgatttacttggtggatcagaataacttcattcttgtcagggaacaaaaataatggtcactcttagagttgaca
aagatgtacatgtacatgtttgaaggaatggtgtgatgctaagaagtttgccgacagataagttttagtgtgatatggaacacctcaaacctcatagtct
caagaattaattatctcatgagctggactcagctagaaggccagtaggtcagtaggatatagaggttccagttgcagttaaaaggGCTCACTTTTGGAGC
CGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGCTCACTTTTGGAGCtgtgtcac
catgtgtcatctaattcaacagaaatttcccaggctcaagacatcttacctaggaaactactttttttagcttgtgtcccctgagggtcgagtgtattac
actggcaaatctgtagcttgaattttactcctggtcgtagattcctgggtttgcagaatctctgctcagcacaacctttgttcaatagagatgctaatga
attttcccaagtcaggagaatttataagcataacaaagacactccttggaaatagccaaaatatctatgtaaacaaatagaacatttttcatgggtctgg
agttcctgcataaaaggacattttgacttgagatttaatggttactatggcattagttgtataggcacaagctatta Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1321 chr3 96598898 96599212 RIP_Alu_chr3_096_01 0 - Yb8AC1141|pAlu3-96397335 CTCTGAACAAGTAAGTCAGGTTG AGAACCTCAAGAACCCCACC SINE Alu Yb8 caaaatggaaaaggccctttctcttattttagcttcttgcttttactatcaaggtaagtgatcaaagtcttaatagttaaccatcattttggcttgttgt
tgctataagtgactactctgacacctggcagctcagctctctctccagctgagctgagttcccaacaggtaggtacatacataaggaactaaacaataat
ttagggattaaactacaatatcttgagcaatggcctacagaaatgaatttataaagaaaacagagtaaagttacataatatattaaagaaaaaatatata
aattatcaaactaaatcatttatgatgaaaaattaatatttatacaaatactacagacaaaagctactgacaaatactctgaacAAGTAAGTCAGGTTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGTAAGTCAGGTTGGtggggttcttgaggttcttatctgaacaagaataggaaaaggctgtgaactgttgattttcatcgttcac
cacggtttgaaccaaacaggtattattttatgtggaaaggatgaaaaagttcaggtttagctcagagaggtctatagctttgatcagattcaaaaagagg
attcaaaatataatttttaagaactaatgatagatattaataaaatacttttcaaaaattaaaccttcagttatatgtaggtattcatttgctttgtaaa
caaaactttttttccgttttatgcaggtgttttcgcatcttgaaaacatgtttatgtttagtatgcccatctgcctgtccttccgtgatatttttttctg
gatacaaagatcta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 372 44 NA intergenic
1339 chr3 98917818 98918127 RIP_Alu_chr3_098_01 0 + Yb8AC1181 TGATTCAAGATCATGGGCAA AGGCACTGCATAGTCTCCGT SINE Alu Yb8 taataaacattttagtacccctccagtttacttatttcctgtttttcttttgttccctaagttattaagtttgctctgtaagagaagtattagtaaatga
gaagccatttgagttacattcagtcactttgattagcatctttggtaatttttttctctctcataaacatatggtaaagcaacatgtaatgttccaataa
ttgtgatttcaaatctaaagtactatttgttcattcccgaaacctgaagcaaacatctggtggttaatgctttaagaaaaaaagtaccttagtgcattac
ctctgtatatgattcaagatcatgggcaaaaatatgtagatgagatcaagccacaaaagtttaagttgatccattcaattaaaaaaggAAAAAGAAAAGA
TGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAGAcccaggtgcttctgtgtttcctctaatgtaaggaacggagactatgcagtgcctgaaggacttcttcctttctgcctca
tcttgcaattagatataaactgtatcccgtatatatcctcccattggaacaaaagatgtgactgcttccctatccctattccatgtatgctcagaattat
tccagtttgtgcataccatcaggttcatattatcatgcattttgttaattcaaattctatttcctacattaaacttatgtcccattttttcttgttttat
tttaagatttattccagttcatactttccatttaaagacagcagttgttggccaggtgtggtgggcctgtaatcccagcactttgggaggccaaggtggg
tggatcact UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 61 466 145 NA intron
1349 chr3 100209392 100209393 RIP_Alu_chr3_100_01 0 + Yd3JXd19 ATCAGGTGCTCCAAATGTCTAGT GCATGCCTCAGACACTTGTAAAT SINE Alu Yd3 tgggggcaatatgggttggcaggcacaaacactagtgctgggggagaatcccatgggtgaccaccaggttcccagaggtgtgcctaggcatggagctggg
aaacctcctccctggccccaagttatctgcatggggaggggagtcagcctaaactcctaatgtaagagagtggagctccagatgcctggagatttgcctg
agcatggagcaaagaggaccccacttcacaacagtctttgtataggaaggactggctgggtcaggctgcttattcaggtgatcaggtgctccaaatgtct
agtgatctgcctgggtgtagacaggagagaacccaccctacaccaggatctttttattagccagatgctgtcacaggggctgtttacccatgttctcatg
nnnnnNNNNNNNNNNnnnnncccaggattttggatgtccttcacaattctggtggattccaattttccttcttgaattaaaactcacagagatgatcttt
atgtactgtcttgctatttacaagtgtctgaggcatgctaaaagcttctaatctgtcatctttgaaaaaaactttatttacaaaacttggtgccaacctg
caggctgcagtttgtcaactcctgatatatgctataatgttctggcagtaatccaccttggaaacctctaggagaatgagaaggaagatttttctattag
tatccctctcttctctgttcccctactcacccttcaaaaggcacttgactttttcttgccatcctctagcataatattcagtaagtctagtgtttgaaaa
tgagatacaggagggaagtt Other - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
Candidate screening precise insertion position unknown TSD unavailable 60 550 238 NA intergenic
1360 chr3 101659956 101659957 RIP_Alu_chr3_101_02 0 + pAlu3-101458495 NA NA SINE Alu Ya5 tctcccttgacaagggattatgaggtttacaattcaagatgagatttgggtggggacacaggcaaaccatatcattccatccctggcccctcccagatct
catctcctcacatttcaaaacacaattatgctttcccagtagtcaaagtcttaattcattccagcattaaacccaaaagtccaagtccaaagtttcatct
gagacaaggtgagtcccttctacctatgagctggtaaaatcaaaagcaagttagttatttccaagacacagtgggggtacaggcattgggtaaatgctcc
cattccaaatgggagaaattggccaaaacaaaggggctacaggtcccatacaagtccaaaattcagtggggcagtcattaaatctAAAAACCCCAAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AACCCCAAAACAatctcctttgactccatgtcttacattcagggcacactgatgcaaagggtaggctcccatggccttgggcagctccatccctgtggct
ttgtagcccctctgcccagccctccatataccagctgctttcatggctagtgttgagtatctgcagcttttccaggtgcacagtgcaagctgtcagtgta
tctaccattctggggtctggaggatggtaggccctcttctcacagctccactaggcagtgccccagtagggattctctgtgggggctccaaccccacatt
tcccttctgcactgccctagcagagattctccatgagggctctgtccctgcagcacacctctgcctgcacatccaggtgtttccatacatcttctga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1362 chr3 101893248 101893249 RIP_Alu_chr3_101_01 0 - pAlu3-101691772 NA NA SINE Alu Yg6 aaagactttcctcctcaatgacattttaccatagccagaaacagccaacatgacaccagcttcacactgtagttaccgttcttagcaacttaatgggata
gtcatcaaaattgcagtttcttcatgaaatacagaatagctcatcctgatattgaacaaagatgttatctactgtgaaagatatgcacaagcaagttcct
tgcactcagagtactgatgttctagttgaggagatgagaagagtatgcataaaaagttaattttatagggtaaaaagaagagaggacaaaaacatttaca
aaacaatatttttatttgataatgagtcatatttattcacttagttgatagttaataaggctagaatgaaagtcatcaccacaaAAGAATAAAGCCCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAATACAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGAATAAAGCCCATCaataaataaactatgtagattgtatcaatgtcattttgataatgtattaaagtaacataagatatgatcatg
ggaacagttgagtaaagtgtacatgggaattctccatactatttgcaacatcttatggatctaaaattgtttcaaaataatttatgtttaaaaagggatg
acataagaatggggaagggtggagccaagatggccgaataggaacagctccagtctacagctcccagcctgagtgatgcagaagatgggtgatttctgca
tttccaactgaggtaccgggttcatctcactggggagtgccagacagtgggtgcaagacagtgggtacagagcaccatgtgtgagctgaagcagggcgag
gcattgcctcac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1376 chr3 103766477 103766802 RIP_Alu_chr3_103_01 0 - pAlu3-103564923|6153 NA NA SINE Alu Yb8 gaatttgagatggccattagaatccctgaggggagattggatgaaactgtctataaaaagtatgagtagatagagaaaagcagaggacaagaagaggaag
tagagccaacaaaagcctacagaagaaaagccaggaagtagcagggaaaatcagagacttgaaggttttgagaaaccccacatatgcacatgtaattttc
tgcgagagaagggagcagtgatatgggctggactccctccctcccactgccaaatttatgtgttgaaatcctaacccctagtatctcacaatgtgattgt
atttggagatacggtgtttaaagaggtaactgagttaaaataagattgttagagagggctctaattcaatatcactggcatctttatAAGAAGAGGAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGGAAATtagttctggaaggagttgtactgcacatctagtgccccaattatctggcttctttcagcttc
tccctgggagttgcacaacatatccagctgcccaacttttctgcctgctacccaagggactggcttctaacttgactatccctgagagccactgggatct
ggcatctgctaggcccctgggagctgcagagagcaaaaacacagtttgaaagagtgtgcagaatgaacgagagtacaggcattgctatagctcttctccc
cagctcaaaggggagtaagtgggtgataaactccagctttcagcttctctctgaggagagaagggattggaccagccatctaatgccccaatttttttac
ttgctactagatggactggcttctg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1385 chr3 104936086 104936087 RIP_Alu_chr3_104_01 0 - pAlu3-104734610 NA NA SINE Alu Ya3 ctgccactcactgcattcttttctacttatctgacctttggcatggtttctttcttgttccttagtaaaatttccaatattttctattacttaagaatac
atgttgttgggaaaaattttccaagttccaatattatcagttatcaacaagtggacatttttaaatgtcaccatcttatttttaaataaatacattttct
ttggaaagacatacaatccatttgtcacaattaagaaattaataaaaattattttttaaaaattactaactaaaaattaaccttaattctagaaactaag
ctatcttaagagttcaattatagtaaactaagaaatagttatcctcaatgatgggaattttatacttcccttaatcaaatgtttAAAAAGAATTTTACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACGAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATTTTACTCaaatttcaatcatttgactcctaaattaataagactataaaattctaaagttgaaagagatcttcaaaagaagagactatataaatca
ttaattgaaggggttgaaatttgagactcaatgaagaaaaaagatttttcaagactccgaatctagtgaatggccagagctgaaacacaaaaatagttca
tcaaacttttcattttaaattttaattagtcatcacaccactctcctctaaggtagtaccaaataatagagtgcaatagtctgttataaacaccaacatc
agttgtttcagtcaactggtggattcacttactctttttgtaaattgtattacagcataaaaataaccagtaatgtgcaggattcttaagggaatg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1386 chr3 105030612 105030921 RIP_Alu_chr3_105_01 0 - 18035|Ya5ACA1044 CCAAAACACAATAGAGGAGCTA TTCTACCACCCCAAAAATGT SINE Alu Ya5 taaattccctgagataaaattaaattcagcattctgttttctaggttatatattaagaatccttattataattcttctcacttaaatcctaacttattcc
aattttctgagccagataaatgtctcttgttcattctaccccatgttgcctatttctaggtcaattcttccttctaaatacagataatataccaaaacac
aatagaggagctatggttaaaatcgttcagtctgaagccaaatctctctgagtttgcatttttacagttccactcaatatgacctttaaaaaatacatct
ctctggggttttttggtaaaaaaaaagatgactgcatctaatatgtatgattaatgtgaggattaaatgaatattatatatatcgcatttAAGCATTCTC
TGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGCATTCTCagttacatttttggggtggtagaaaagatattggaattgttgttttcttcccacttgccaaattttcttttctttttggaa
gatgtattaaagctttcaattaactttaattgacatatttatttaaaattcaacaaattagggtatactgtctaagtactgccaaacactaagtattcag
gatacagtagaaaataaatgaacagaagagtacttaaactttctgacttcttaaactttctattttaagaaaaatattggaagaaaatatacaaagttga
aaatatacagtatattagagagtgacaagtaatatagaaataaataaataagggaaaatacaggaacagtggtgcattggtcaagaaaagctgttttgtt
ttgttgcat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 552 233 NA intergenic
1437 chr3 111702114 111702409 RIP_Alu_chr3_111_01 0 - pAlu3-111500551 NA NA SINE Alu Y gaacatgtggtgttcaggtttctgttcctgtgttaatttgctgaaaatgatggttttcagcttcatccatgtccctgcaaaggtcatgaacttattattt
tttatggctgcatagtattttgtggtgtatatgtgccacattttctttatccagtctatcactgatgggcctttcagttggtttcaaatctttcctattg
tgaatagtcctgcaataaacatacatgtgtatgtgtctttagagtagaaaaatttataatcctttgggtatatacccactaatgggattgctggctcaaa
tggtgtttctagttctagatccttgaggaatcaccacattgtcttctgcaatggttgaactaatttacactcccaccaacagtgtaaAAGCATTCCTATT
GGCCAGGCGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCATGAGGTCAAGAGATCAAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAATATACAAAAAATTAGCTGGGCTTTTTGGTGGGTGCCTGTAGTCCCAGATACTTGGGAAGCTGAGGCAGGAGGATGGTGT
GAACCTGGGAGGTGGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTCCATCTCAAAAGAAAAAAAAAAAGCA
TTCCTATTtctccacatcatctccagcatctgttgtttcctgactttttaatgaccaccattcaagctggcatgagaacgtatctcattgtggttttgat
ttgcatttctctaatgattggtgatgatgagctttttttcatatgtttcttggctgcataaatgtcttctttggaaaagtgtctgttcatattctttgcc
cactttttgatggggttgtttgtttatttcttgtaaatttgtttaagttccttgtagattctggatattcacccttagtcagagggatagactgcaaaaa
tgttctcccattatgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaatt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1437 chr3 111753719 111753720 RIP_Alu_chr3_111_02 0 + pAlu3-111552258 NA NA SINE Alu Ya5 tttaaagcctagttggggatccacaatagacaaaataattaacgaatacaaacaaatgcattaaaaggtacttaataaaatgtccttggaagtaggtggc
aatgccttaatagttgtcaggcccaagggccccttccattcttgtcaaggggagtgctagccttctctccttgcatagcacacaaaaaaatgtccttggg
aagagataattctcaccaagaaaagagagagtattttctatatttgaggaatatccaatactattaaattctttataactaagtcaaattggaaaacatg
tagttattggcaggaagaaatgcttaaggatagagtcatttgatgactcttgaaagaaacagaatggcaaaggaaaaaaaggacctattAAAATTATTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATTATTTAaatttccaaaattcaatgacaatacaaatgtttagacaagttacacctgtgcttgattttaggttca
tattttatatgtcaaacaggtgtaataatgtcttgttaaatgtagcaaagttaataataaattgcgttcactgtgaacaaataaataggcagtgacttta
ataactactataaaaatagcttaggaagtagtgggttggaaaaaaaattataagttaatacagtattagagtaacattaacagaatctttcagagtgtga
gaaaatgtgttcacaggtggttatcagtggttaagctaatcaagaaagaaactcagtagaacttttagtccaaggacattcccttatcaagatttttatt
taggagctctcacataagtcat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1443 chr3 112470168 112470169 RIP_Alu_chr3_112_01 0 + pAlu3-112268707 NA NA SINE Alu Yc1 agtgttttagtaccatccgcttggtattgccctcatgatagtgagtgagttctcatgagatctggttgtttaaaagtgtgtggcacttcccctgtctcgc
ttgctcctgctgccaccatgtgaaactcctgcatcccccttcgccttatgccatgattgtaagctttctgaggccacaccaggagcagatgccaccatta
tacttcctgtactgcttgtagaaccttgagccgattaaacctcttttcttataaattacccagtctcagatatttctttatagcaatgcaagaatggccc
aataaaatcagcaaatatgatgtaagcagagacttaataagcacttatgtattgaagtgtgtcctcttcaaaggcagctgcctcaatgtAAGAAATGTGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCTTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAATGTGGaaaagtcatgtggaagagaaccaatgtgccccagttggcagatctagttatgtaagccatcttggaccatccacc
tagtcatgctgccatgagtgatcttaggtaagatgggctgaagaactgatcagtccagccaaaactggagaattatgagccaacaaatttttgttttaag
tcactaaatttcagaatagtttgttaagcaccaacaaataactgactcacaggtatgaaaactcattgagaacagggcttatgtcccatatgtttagatt
aataacctcctggctatttcagttactctgcagaaatgaaggcagagctacagttacctggcaaagatgggaccacttaacacaaagtcaggcattgtct
atgagggagggata Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1454 chr3 113950091 113950402 RIP_Alu_chr3_113_01 0 - pAlu3-113748530|16468 NA NA SINE Alu Yb3a2 tttaagatgattctcacttacaagaacactgagtggtaagttgagaaaactatgattctcatgttcaagactattttccaattgttcaccctatatttcc
tgttcaatgcccctttacccactttctctgccccaacctgttttcccagataattctccccatctagtaactcccctttccttttgctcattatccccaa
cttttagtactttccagagtgccagctctggaccctttatccttcaggctcaaagccctgtactattttattttctctggtgcaattatcctccataact
gaaatccagagctcaaatcactaacaactaaaagctaacttctaaggatgcttagtcatcatacacttcctagaagggaatAAGAAATATTTACCTTCCC
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAATATTTACCTTCCCtcctgggtgtggggagtgatgggaaccaagtgggagcagagaaagttccctccctcctagaatgggttta
attactccttcccttgcaaagaagcaaagagaaacagaaaacaggtagtgatgtcaccatatcaaaactggttaaaaactcatatgctgttacctttata
ttaccatatgctgtgtcttgtatgttcagaataatttcttataattaagggaagaaaattatgatgcccttagagcttcatgtgtgttggcttctgttcg
tcctctgtttgatcatgtcccagtgggctggtggaaaggatctggtgaaagtgatttctttataaatttctcttttattattacattatctgggccctgg
tcaccaaatct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1464 chr3 115336723 115337037 RIP_Alu_chr3_115_01 0 - 981 NA NA SINE Alu Yb8 accaacatggtgaaaccccatctctacttaaaaaaatacaaaaattagccgggcatggtggcatgcacctataatcccagctactcaggaggctgaggca
caagaatcactctaacccaggaagcaaaggttgcagtgagcagagatttcaccactacactccagcctgggcgacagagggaaactccatctcaaaaaca
aacaaacaacaacaaaaaaaaacaaacaaaaaaacacaccataatctctgttgtaaataggcattcagataaaatgaaatatgcttattttaattattag
aaaatgccatcaaactaaaaaccaaaaaatgttaaatatgtattctcttaacttgacgtcatgttaagtgaaataagccagacatagtAAGACAAATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGC
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGACAAATATCacatgttctcaatcacatatggaagctaaaaaagtggttatcgtgaaaatagagagtaggttcatggttaccag
aggctaggaaggagatgggggagggggcgagaaagagaggtggattcaggggtacaaacatacaattaaatagaaggaacaagttctagtgtctaatagc
acagtagggtgactacgcttaacaacagtttttatatatttcagaatacctagaagaaaagatttgaaatgctcccaacacaaagaaatgataattgttt
gaagtgatgactagcctgatttgatcattacacattgtatgcatgtatcaaaatattgcatttgccccacaaatatgtaaaattattatatatgaatttt
taaaatcttcaaga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1469 chr3 115949173 115949481 RIP_Alu_chr3_115_02 0 + pAlu3-115747612 NA NA SINE Alu Ye5 tgggattaacagaaagggtggaaatagccaaatgtattcatatttttggccaggcgcagtggcttatgcctgtagtcccagcactttgagaggctgaggc
aggcagatcacctaaggtcaggagctcgagaccagcctggccaacatggtgaaaccctctctctactaaaaatataaaaaattagccaggcatggtggta
cacacctgtaatcccagttcgggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgagcaaagactgagccactacactccagc
ctgggtgacagagcaagattctgtctcaataaaataaaataaaatgacgttcatatttttaaaatacagcaatattcatttgtttAAAAAACAAGATTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACCAAGATTGAGAagagcacagttatatagtgacttttgatacatacacaataaaacttattgaattttcaaaaagtgagaaaaaaa
ctactctgctttaaatttaaagtaataaataataatgaagacatatcaacattggtaactgtcagagtgagaaaaggaaattgaacattcaatgtgacca
gaggaagggtgaacatgggagatactgcccaggaaaagtgctcatgatgagtaattcaaagacccagaatcttaacataaattttttatagttttctttt
caagggactatttgaaaaaagatggttctggggtttttgttgtagcttctttctttctttctttctttctttctttctttctttctttctttctttcttt
cttctttcttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1483 chr3 117757974 117758285 RIP_Alu_chr3_117_01 0 + 30973 GTTGTGCCCCATTTCAACTACTG GCGTCTAACATCCTTCCTAGATTG SINE Alu Ye5 atgtatatggtatataagaaacaaatgcatatcatgtttagacttaggtcccatccccaagaaatctcattatatatatgcaaatattccaaaaatttta
caaaaagatctgaattctgaaacacatctggtcctaagcattgcagataagaaatactcaacctatatatatttgggtgaaaaagtttgatgggtttacc
catttatgtttgttgtgccccatttcaactactgtttgtcctagaaaatgagatgaacaataaaatttcagatttaggttttataactttttaaatatac
acttaaatgcacgcgcgcgcacacacacacacacacacagagtagctaataaatggctcctacttcaccatgttcgaattcctttataAAAAAATCTTCA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATCTTCAgaagtatagtatgggcctttcatgaagggtatacctaaaaggtacaatctaggaaggatgttagacgctgtcctgat
taatacttaggaaacctgaactaacttttctgtagaataaaaagataaaaagaggctggccttcatctgaaagagggttataaataaaatccatatcatc
attttacttatgacaaaaatcacaatttttttctcctttaaaatggcataccttattttgtcatttttaaaaataaataaatacagacctgggtagttaa
aattgccaagggaatggaagtgggtagcgatgtgcatgcagtgtgatggcagaccagagctgtaggagctcttcacactgcttcagtgaggttgctaagg
gatatgagccc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
1515 chr3 121908164 121908165 RIP_Alu_chr3_121_01 0 - pAlu3-121706690 NA NA SINE Alu Yb7 aggtgatatcctaaattctagtgggcatcaaagtttttcctcttttgtctatatcttgctgtaataattaattccctgattttcctttctatctaggatt
ttaattgattctcttcagttgtattttattgtatttctgggcctcgttacattttgttatttttctcaatctatcaaaatccgtgcatgtactttctact
atccatacttctttactatttaatgtctcacccactctcttatagtggcatatttcttttgctctaataactaaatctcttacaggtaggaagcttacat
aactaatcattattcaaagaactagaaaattagacatttgaatagattagtctcagatgatctacaggacactattttgtcagctaAAGAATAGCAATTG
GGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGC
GCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCA
GTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAGCAATTGtatcaaatcagtactattttagtagatt
ttcattacctaatattacttttagtgagtataagtaatatatgtatgtactggtatctatggcagtactgtgtacagtgaagaaacaacataactttttg
agtgaataatttcatatgtacttgaagtagttttgattctcttgattaataaagtggttctacaggtaggaacaggcatggagtaggcactcaggaagtg
ttgaatgaagtaaagatctgctaaaagtttaatgggatttcgtcagcccttgtaaaataaagagttataaaactgacagagaaaggtttatggctattta
taaatatttgtagagaaaattttaaaataattgtctctgagttgttagtcatactaga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1527 chr3 123486134 123486135 RIP_Alu_chr3_123_02 0 - CASR TCGAGCTACCGCAACCACGAGCTGGA GGATCCCGTGGAGCCTCCAAGGCTG SINE Alu Ya4 gtcgggtcagcgtatcgctgcttttctgggcctccagggagttctggtgcgtagaattcctgtgggccatggcgttcttctgaggctcatcaaagctcag
tgagaaggtgaccgtgccgctgccaaagatgaccttctgcttgcatctgggctgctgctgagatcgttgctgctgtgggagggtcaggggctgctgctgc
tgctcttgctgggttagggccagcggctgctgctgcttctgcctctcgggctgtgggaatgggtcttcgctgttgctcttgctgctgatggaggaggagg
gggtggatcccgtggagcctccaaggctgctggaccgcttgcgggagacgttgctgcggcgcagcgtggcccgggcagccaccttGAAAGCGTGAGCTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACTTGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTTAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCNNNNNNNNNNGAAAGCG
TGAGCTGCggtgctgcaacgcacctcctcgatggtgttgcgggatggcttgaagagaatgatgtagatcttgttgaagaagatgcacgccagcaagccaa
agctggctgccaggatggcaatcacctctacggcagagacaaacttgccataggtgctggcataggctggaatgaaggagatccagacgatgaagaagat
gagcatgctgaaggtgatgaacttggcttcattgaagttctccggcagcttccgggacttgaaggcaaagaagaagcagatggcagccagcaggcaggtg
tagccgatcaggaagcccagggccatgagggagccctcgtggcacgtgatgaagatgatctcatcctccagctcctggttgcggtagcttgac Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.PMID: 11700292.
- Janicic N, Pausova Z, Cole DE, Hendy GN. Insertion of an Alu sequence in the Ca(2+)-sensing receptor gene in familial hypocalciuric hypercalcemia and neonatal severe hyperparathyroidism. Am J Hum Genet. 1995 Apr;56(4):880-6.PMID: 7717399.
Direct sequencing NA 0 96 374 Familial hypocalciuric hypercalcemia exon
1528 chr3 123621141 123621458 RIP_Alu_chr3_123_01 0 + Yb8AC1197 GCTTTGGAAGTTTCCTCCCT ATACTGAGGGGCAAGGGAAA SINE Alu Yb8 ctggccaacatggtgaagccccttctcaactaaaaatacaaaaattagccgggcgtggtggcaggcgcctgtaatcccagctactcagggggctgaggca
ggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagattgtgccatcacactctagcctgagggacaagagcgagacttcatctcaaaaaa
aaaaaaaacaacaacaaccctttgtagagacagagtttcactacattgcccgggttgaccaagcaaaatttcttacatggtctcattaacagtttctatt
tctgctgcccttaatctttaccatctaagtgctttggaagtttcctccctacagaaatcaactagatttctttaaatttcccagacatcttAGAAATGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATGAAagtctcttatcttaatatagtttaaaggtgtgtttcccttgcccctcagtattgtaaatatctaaacagatgtg
ttgccacaaatggggcaatttttaaatttaaaaacaattttttttttgtatgtgtgctggaccaaaccgtggcatgggagtgattcccacattaaggaat
gtctcaacatccttcatagcaattcttgactaccaaatccagtctcaatatcaagcattaatagaactatgtatacctagttgcttaagaccattagcca
atgtatgaaaatctagttgggctttataaatatggagtggccacgtaacattatctaaactgggacatttttaaaagtgaaagggggcagtaaaataatt
cacaggtgttagctgat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 447 122 NA promoter
1536 chr3 124719447 124719751 RIP_Alu_chr3_124_01 0 + pAlu3-124517886|Ya5ACA1011 CGGTCCCTGACCATAGATGT AAGCAGTCAGTGTGCAGCTC SINE Alu Ya5 agtcctttaactccagcaatgatagcccagagaacaatattctcagcaattggtgactgtggccccaagaaaagagctggggcctactcaacccacagtc
cgcccccaaatctccaaatgcagtatcccaatgtgcccacccaacactccagaggggagaagatttaccactgacagaaaggtaactgaaatgtcaaaag
aacatgaaactggcaatatattttgtgaaatgtcatggttctttctgttctatgacagtgtaataattgcaaaaatttcaaaaggtggggaaaaaaagct
atgaacaccatctcttggaccagaaatatcaaaatggtgacctacggtccctgaccatagatgttctgtttgggcttgtacagtgctttAAAAATATTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATATTTGaatcagtttttaaaaattaggggatttctcattttaaaaatctagatttctgccttttctcaaaaaaattagattttgcactact
gaatctgtctggcaatctctagctgagctgcacactgactgcttgtgtgagatggcatgcaccctccagtcaccatgcttttcttccatgttcttttaaa
atcctgtgggacagacctctgccgccagtagatagcctctgctacagattgtaaagtgctacacaaatgtcatgcaacatatttgaaaactctaaagttt
taaaaactttagttatttaaaagtgttatttaaaagtctgattagtttttacacttgaggctctgaacatacttttctttaaggcaatgaccttggccaa
agat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 500 185 NA intron
1545 chr3 125889212 125889213 RIP_Alu_chr3_125_01 0 - pAlu3-125688109 NA NA SINE Alu Ya5 ggattacaggtatgagccaccacacacagcctcctctgctcatttctaaatgagcataagacaagctgtaattttaaaaaatgtaaatgcaacataatcc
caagcagcgatagacttgtctctttcaactagttccttactcccaagtattttcgttatcatttagttctaagtgtttttcttcaactatgatttttttc
ttttacccagttgtaatgagtatgtttttacatttccaaagatgtgagatttttaaaaaggatatttttgttgatgatttctaacttaattgcattgtgc
ttggaggacttggtctgtatgatactgattccttgttttttgttgaggtttgctttgtaagtagcacacatggtcaatttttgtAAAAAAATTCCATATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAATTCCATATGGgttttccaaaaaatgtataatcattaatttgggggtacaggtctctatatgtgtccatgtgtcaagtacattgattgttt
tatggatatttctagtccaaatatccccctttacccctcaatattttggttagagaacatttagtgtgctgtcaaaaataaaaaggatgaaaatatggct
tttaacagaataatgaaagcatctatcacccatctcacaagatagttggttgcaaaggaccaaaatgggggtgcgttgctgtgtatgcactggtctccag
ctgctcctggcagcctaggagtcagttaggaagggactggaggtggggggccgaggaggatgcagtggtggagttacagcttcttctttataaatcacat
ttcc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1546 chr3 126051363 126051364 RIP_Alu_chr3_126_02 0 + 2237|pAlu3-125850277 NA NA SINE Alu Yb8 ttatgccacatcacctgtgtttgtttctatttctctcgccatttaccagactagtatttatttggggggcatatttgatgttttgggacatcacaggcac
aactcattatcattggaaactacatatataaatacaggaagacagattccaaattttagctctatcgaaaaaagaaaacaagaagaaagagaaaagacag
cactagatttgtctaccagctacaataagatagccaacaggcagagaaaaggggaattaattcagaggaaaagaacaaagagaaaagctagtgtctggca
ggtgtggccttttctgtctcaccctatagagttcaaagagaggctcaagtcagggcaataactggaagacccaggccacgataatgaTAGAAATTATGAA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTTAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAATAGAAATTATGAAaaacaaatcacttagaaccaactttaaggctcaactcataccagatcattctatctgccttgggcttattaacct
ttcaggagtgccaagagatgccctatttatcctgcagtagaactgtctacacatacttgaaatttggatagattctttgtgtgtgtagaggcacaacagc
aaaggtggcctcactcctgcccagcgggtctacacctgacttgccggcagccacatctcagagcaaccagtctttcatctcaagctgacaactagcaagc
tgaagccttctttaacttgcagggaactcaatcctctatgcttcctctcctcctcccaccgtgacaacaaggcatatttcactaactagatcacgaagaa
tccaatgatcaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1553 chr3 126972113 126972411 RIP_Alu_chr3_126_01 0 + Ya5ACA1063 CCCTTTATGAGCAATGCGAT CTATGCCCAGCATTTTTCA SINE Alu Ya5 aacacttggggtcagaccattcgtggtggtggtgggaggggcgtcctgtgtattgtaggatggttagcagcatctctggtctccatcctctaggtgccat
cctaccctcccagctatggctaccccagatgtctccagatgctttcaaatgctgtgggacaagggagtggtacatgagcaaaaccaccccagttgagagc
cattggtctacacttgtggaaatgtttgagggtgagagtgtcgagctcgggtccctgctgtaccctttatgagcaatgcgatcttggaaaattaatacga
ctccaggggccttagttttctcatctataaaatggagataaatgagatacactttcataggaaggttatatgggatttactgagataatAAGACAGTACA
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GACAGTACAtgaaaaatgctgggcatagcatttatttatttttatgttttttaaagacctaatcttactctgttgcccaggctggggtgcagtggcatga
tctccgctcactgcaacctccacctcctgggctcaagtgattctcctgcctcagcctcccgagtaggtgggattacaggtgcccaccaacacacctggct
aatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctaaggtgatcctcctgccccggcctcccaaggt
gctgagatcacaggtgtgagccaccacgctgggctgggcatagcattgtaacacagacaaagcacaaaatacttgggcaatatctttttacatttggc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 466 157 NA intergenic
1560 chr3 127841636 127841947 RIP_Alu_chr3_127_01 0 - pAlu3-127640448 NA NA SINE Alu Y tagaaaagagaggaaaggatagggaagtgggggcaagaaatgacagagggttgagcaaagactgaagtctggttgaagggtagttgaaggcataaaattg
accagatatggtggccagttggatgtagacacttggctgtgtatcagaatgtcttgtggactttaagaaaaattacaaaccacttgtctctttgtgcaga
gattttgatctggtagatgtgggcagtgtacgtgcacatttaaagcatcatagatgatcctggttctgaccgtagccaggtgattatgacagggcatcca
ggtcatggtaggatatggattgagggagaggaaagaatacaggaagagagactgggggggaaatggaatactgttcactgagatAGAAAACACAAGCAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAAACACAAGCAGCtttggtttattggcagggtggggttgagttcaggataatgggttgatgctggacacatttctccagtcaactc
aatggagagccttaggtcaagctaggatcagctggttgtagataaaatgaggcctcctgacttggcagtgtaattttggggtagttttatttgctttcaa
gaatccttcttctggttgggcgtagtgactcacacctataatcccagcactttgggaggctgaggtagaaggattgttcaagcccaggagattgagacca
gcctgggcaacatagtgagactctgtctctacaaaaaatagaaaaattactctacaaaaaatagaaaaattaggcaggcatggtggcatgcacctgtagt
cctagctactc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1567 chr3 128813228 128813541 RIP_Alu_chr3_128_01 0 - 22588|Ya5ACA1070 CGGATCCCTCAAGGATGATA TCCCCAGCTGACTTCTGTCT SINE Alu Ya5 aagggtgactcatctgaccatcctaaggattaggccaaaattcaaacctaaaaagtctggcttcagactgcatgctgcttctgttagttctttaaaatct
ctaagtgttgggcatgaccctgatctctttaatactttaccagatcagtgtccagggcccacggaaggcaggcagggccatgaaactgacagagtagggg
acggggtaaacctggggacacaggccctacctgcaagggcagctatgcctcagctccgtcagcgttaccagagaggaacacagagccagcacccacagat
cttggattttcaaaaagcatccggatttctatgtgaagtctccggatccctcaaggatgataactaactcaaaataaaaacaaatacAAAAAGTCAGCTG
TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGTCAGCTGcagaagcctgcagggcttcctgctggagatggaatctgcagaagacagaagtcagctggggacaagtgagggag
aaggtgctctatgtagacacaaatagcaggcatcaagacacgggagcggggtagggctgcctccatttggggaacaagtcgttttggaacctggggctcc
agaagcacatggggatggcccgggcagatgccttattagtgcccaggcatgccatgcccgccacacgctcacctatgggtctctcacctcttcaatcaac
agagtgggagattagtggctgaagctcaaggcaaaggaagagaaggtgccagaagagagttcctcaagcatgcagctcctttggcgtggtaggcacagac
acagataatcatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 442 120 NA intron
1581 chr3 130667184 130667478 RIP_Alu_chr3_130_01 0 - Yb8AC1202 AGTCCTCTGCAGCCACAAAT GAGCTCTTTGCTGTGGCTTT SINE Alu Yb8 gctaatggcctttgacagcattagacatgcatggtacagcatgggccaaaaaaaattattcaggaagaagcataataaccttccaaacaaccttctaaat
caagtaggcaaccatctgtaaaatgacattgagctggtaaacaagtaggacctttcgtttaccctcagaggactctgtaaaggatactgatggtttaata
atattataggatatataaagagcatatagggtcaggcacagtggctcacacctgtaatctcagcactttgggaggctgaggtgggtggataacctgaggt
cagaagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccaggtgtggtggcaacAAAAAATTAGCCAGGC
GTGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAA
ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
TTAGCCAGGCgtggtggcaggcacctgtaatcccagctactcaggaggctgagacaggagaactgcgtgaacccgagaggtggaggttgcagtgagccga
gattgtgccactgcactccaggctgggcaaccgagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaagagcatataattagtttactctcaaagt
cacatggacatagaaagcaaagtgtgtataaaatttaagaaggtaggtgccaattgtttgtgtatctctaggctttagggacgtctgtagacttaatttt
gactttctgacaagggcaaaaaaaggctcatgaaaaagctatttattaacaggtgggcacatattctgcccaaacttggagggaagaactaaaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 1175 864 NA intron
1587 chr3 131395393 131395697 RIP_Alu_chr3_131_01 0 + pAlu3-131194206 NA NA SINE Alu Ya5 tgttagataggatgttaagttgtctggctaggaggctgtctgtctcgctggctttgaagatgtgagctgccatgtcatgagcggccagatggagaggccc
atttggcaaaaagctgagggcatcaacaaactggggccctgagtccagcagcctgcaaggaactgaatgctgccaacaaccagatgagcctggaagcaga
tcaatcaccagtcaagcctccagatgagaactgagccctggctgacactatggttgcagccttgcactgaacccagctgagtcacgcctggattcctgac
ccacagaaaccatgcagtgataactgtctgctgtctcaagccacaaagtttgcagtaatattgttgcacagcaatagataactaatatAAAAACTGTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGGGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAACTGTCCTacatcatgtacattactgagcgaaatgtagaacctggatttgagctctgatttcagaggtgtggtctcagtctccccagggaga
cctgtcctgggagacagttatgccaggctgtgatgctgtgttgattgttctcttcctacccagaagctttcaataggcatgtcaagcatgtgaccctagc
tacatataccaaatgtatttctgacaaatgccaggacatcgtgagctttcttgttttactgagagctccataaaggaatgactatctttttctttttttt
tttttaaagagtctcactgtcacccaggctggagtgcaatggtgctatctcagctcactgcagtctctgcctcctgggctcaagggattctccagcctca
gcct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1614 chr3 134972998 134973307 RIP_Alu_chr3_134_01 0 + Yb8AC1204 CAAGCAAGAATCAATGGGTG AATTCCAGTGGGCTCTGCTA SINE Alu Yb8 aagcaccaagatattggcttgtaagtactcttctttactaaaaggaaccagaactccttggaaaaatagctgacttcagggctggggcaggaaaaataga
tgctgagcctagaacaacacactgaagtgctcaaacagtgatgggacactcaaagcatacaagaaccaatttgaaggatctcctgttgccaagtctggga
attttgagcattaaaataaataatgatagcagtaagggataatagcccattgaaagaaataagaatgcatgaggcaatactgattaaacaaatgaagaag
ggaaaactaatcaatgtggaaggaatgatagagttagaaaactatcacttggcaaccaatatattgataactgattcaagcAAGAATCAATGGGTGTTAA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAGAATCAATGGGTGTTAActtgtgggtgaacgttggacagccataatattaataaaaacaaacaaaacaaagcaaaacaaacattggcca
gactgagcactccacacctgacccctcagtatcactaagtgctagcagagcccactggaattcaagctgtgaatacttccctgccttctctcatgttcat
tccccaactcctcactttcctgggcaactcatccagaatgaaccggctcagcaccagcccctccaggaagccttcccagatggcataccctgtcctacaa
gaagactcctctgttcatattgccattatgattgaattcaccacactctgtaatacactttggctacagaaactctttgagctctttttcttcatcttat
attcccaga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 59 380 67 NA intron
1674 chr3 142801306 142801307 RIP_Alu_chr3_142_01 0 - pAlu3-142600205 NA NA SINE Alu Yb7 tgtttttagtcttttcacactgcagctttgggaaaacttcattccctgatttgtgtttgtcttggccttcctggtgtgcagttactgctgtagaaaaata
ttaatagcttcatttcatataaacgtaagtaacttccacacacttatgtagaggactaaaaatgtatctggtatttaagtaatctgaaacagttctgcaa
gtgactgtgttttgtattactgtgaagatataaaaatgtagttaattacaatttaaagagtgttctacataacttaatttctacattccctcccttactc
ttcgagggtttcctttcaataagcaatttttccatgctcttaatgtattcctttttagtaggaatccagaagtattagactgaatGAAAACGCACTTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACGCACTTGCCatctctggctatggttcacaaattgaaatgcctcctttatcacataaggaggtcat
gtatatctgtggcaacagggagtttccttattcactctttatttgctgctgtttaagttgacaacctcccttcccaataaaaattcacttatacctcctg
tctttgtagttctggtattcactttactatgtaatagaagtagcatgttgctgccagaatacaacattgcttttggcaaattaaagtgcatgtcattttt
taatacactagaaaggggaaacaaattaaagtacacaagtctaaatttaaaacttttgtacttttctatgcagatctgtgcacgtgagagggtgtcctgt
ttgtctagtgattgttagagttggaacac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1692 chr3 145187982 145188291 RIP_Alu_chr3_145_01 0 + 4020 NA NA SINE Alu Ye5 gtgtcagttgaaaatattgttatttgaaatatatctaacctacgggacatcatagcttagtcttgcctaccttagacatactcagaacacttacattagt
ctaaagttgggggaaattgtgtaaaacaaagcctatttataataaactgttgaatataattatattcatgtaatatattgaattctgtactgaaagtgaa
aaacagaatggttgtatgggttcttgaaatatggtttgtactttatttttaaccattttgatgatccctggcactgcagctctgagtttggtttgacatt
ctgattattacatctcacccaaaactttgctctccatttacttttgagttcttcatgggatagatgagtagtgtctgaagtgttttGAAAATTAAATGCC
GGCCGGGTGCGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AAAATTAAAGAAAATTAAATGCCatagaagttgtaaagcatcaagaacaaagcctgtaggtctagaaccaattcagttagcaaaaccaaagggttgttgc
tccatggtgagggttttatattttttaatcccctctttccccctgataaaagtaatatgagtatcttttgacaaacaaaggctgaaaatttacggcacct
ggggaaaagtttatgtgacagccatatattaggttgacatttactttttgcatgatcttggcatgatcctattaaatacttgatttttcccactcccttt
ttcagattttatacttaccagaccacttttctgattatttcttgacttgccatgtagatcctcctacaggaagtgaacaccctgctggagtattctactc
tctatttac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1722 chr3 149111345 149111644 RIP_Alu_chr3_149_02 0 - Yb8AC1133 GGAATGTGGTATGTGATGAAGGT ATATCCCAGCACACAGTTGAAGT SINE Alu Yb8 gctattctgggtcttttgcagctccatgtaaactttaggattttaaaaaatttcgaacagaggtatttattaggttggttcaaaagtaattgtggttttt
gccattgaaagttatggtaaaacccacaattgcttttgcatcaacataataacatgatcaaagaggtcaaaaatggtttcccccaagaaaacacctataa
gctgaaagctgaatgatggacaggtgctaactagaagaccagaaaaagcaagtttcaaacagagaagtggcatgtgcaaaggtcctgaggtgggaagaaa
catgctggatacaagacttgatgggaaaccattgtgactgccatggcaagaaaagggggaatgtggtatgtgatgaaggtggcatAAGAAAGCACCAGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAA
AGAAAGCACCAGAGctctctcttttttttggtgagagttttgtttttttctcaaataactaacattttctttaaaacttttaaggaattttaatatggac
agagtacttcaactgtgtgctgggatataaattgtagaatatttgttaaatgaatgagattaattataattttgtttttcaaagtaactttaatagtaat
aaaaaataaaaaatatcctaaaggtacaatactggtttgtttaaattgattttagtacattcatacagtacaatgttttgaagttgttaataatgataat
tctgcagaagaatattcattggcgtgaagaattgtcctcaatacagtaaatgaaggcagcctttgacaataaaacctcagactggcatggaatccgtga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 471 157 NA intergenic
1727 chr3 149689185 149689492 RIP_Alu_chr3_149_01 0 - 12662 NA NA SINE Alu Yc1 gtgtgtatagaagggaagttaatcagaggaccatttaaagccattttctggctcaggttgtagaataagctattttgtttttattggagcagagtaggac
acaaataagatagctgtacttaaatgagtcttcaatcagagcaaaaaagcccatgtatatttgtttttccatttttcatctacttttgccaattttgagc
aaagttgcaaaacacactaacaagtgttcgggagtatcatcaatctcattaactgtggtgaaagtataaattggtagatgattttaaagaaacctgtcta
tctatctgtatctatctatctatctatctatctatctatctatctatctatcatctatctatccatctacctacctatctatcatctatAAGAACTTGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAACTTGAGaataatatctattccatttggcccagtaattccaacttttagaaatttatactaagaaaattagatagagatttatttataa
agattttccatgcattgctattcttaatcatttattttaaaaattggcaaatataacacaaatgatgaaaactacataaaacatacaacaattataaagc
aagcacatatatgaatatcacataaatcaagacagaatggggccaacacacaaaaaacctctttcctacttgccccaaaggtaaccactatactgaattt
tatttcaacaccaagcatgcatccttaaataatatgggttttcctggtttttaaatcttatatgaatggaataattctgcatatatgtgtttgtgtcttg
cttcttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1729 chr3 150049500 150049808 RIP_Alu_chr3_150_01 0 - pAlu3-149848310|Yb8AC1126|238424 CTTCCTTTGACGGTAGTGGC CCCATTTGCAAACTGCTTTT SINE Alu Yb8 tgcaagacacatgccctggattggcacctttgtgtagtgcgctctgctttccattttgttaatctgtggagagggacaagatacttgttggctggatatt
cttctggcttcccatttttcactttgaagttgtattattattattattaacagtgtcatgtagacatctttgcaggggaggtgcaccaaagattgggagc
ttcttcctgcccaataagtgcagccatatggctaggtttgagagccttttctcccagttttaatttctctgacaataacaaggtcacagaattcaatatt
tcattgtcctttagaattttggaaatctaaattcattgtttttcttttaagtctcaaaacttcctttgacggtagtggcaactttatattAAAGAGGTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT
GAACCCGGGAAGCGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAGAGGTCTacactgagagactggacagtttatgaggccattagaagctcagagtgcactttgtattcttgctttaaacaatatagtatga
gtaaaagcagtttgcaaatgggaaagcattatatgtgtaagatattcttgttattccatctactttctactgctctgctaaacatatcttagagaaacat
tgtagtcttctctgcaatccatataatacttttcctgttctttacttcattggtcttttgcattcttatctctgcctttctttcttctgaaggttgtctc
atgatatgagcaattattaggcaagctacatgtaaaatcattcagaaatgaaggcacatacatttttatcatgactcagatatcaaaggactgctgttta
taggatgt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 60 463 145 NA intron
1731 chr3 150327084 150327398 RIP_Alu_chr3_150_02 0 + pAlu3-150125897|9502|Ya5ACA1086 NA NA SINE Alu Ya4 cttaaaggcaaggataccctctaaatgcagcaagccaggaaaactacagaagtggcctgcctgtgccactttggcaaagaaaactagggaagagagggga
gagaagaggaggctagggaagagagaaggagggccatttggagctgtcgtttccacctccttacaccccaccaactgctctatctgaaggctgagggctg
gacacctcaatgctggcacctgatttccccaagtgccttgggcttctctgacagtagtgatggtgttgtttagagatgcagaaaccacttcatccattgc
tctgagagagtcacgttctattcttcaggaagcatgcttacaacaccaacctaatttttaaaaaatctttcagaggccccttttttAAGATGCAAAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGATGCAAAAATAatggagccacctatgcaaatagtggtcagctaccttttgggaattcctatacactttccttgtttgtttttt
gtgacttttccagaaagaactttgaggaaataaagaaataaaaaatgagaagtaaatggtattttgtgagtgactttctcaacacattctctaagaccaa
tgcagatatcccgaggtacctcacagatgggataggaaatcagtgctccagagatccagaatccttcttttctaggctggttgagtagagctctttgtcc
atgttgttgcagaaccatttttgtagccatccccagtggtgttgtcacctagaagaaacttgggggagctttttacccacatagcaccctcaatctcccc
agcaaatacagctt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 0 0 0 NA promoter
1776 chr3 156131075 156131381 RIP_Alu_chr3_156_01 0 - 4679|Ya5ACA1100 GCATCCTACAAAGCCATT GCCTGGGCAATAATTTTCAA SINE Alu Ya5 tcattatttgtcaacagacaaatgggtagatgctaggagtaagtagaggagtaagtaaattcagagggaattttttttttgaagaaaccggggcaaggtg
agggtggctttagtttatgatattacccatgctcgctattatgactgtgcttcctgtactaatttccgtatctgttcaagctgaatccacatgcctgttg
attggtactttgcttggtttcagggacctctctcaaatgtagcctagagcttctgaataaaaaatatcaagttaagatatttgatgaaagtttttttcta
cttgtttgccttgatttatatagtgcatcttacaaagccattgaaattaaaccacatatccataatctgttaagaaaaggtaagtAAAAGAAATAAGGTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAATAAGGTTatatgaaattgggactattttgaaaattccaggaagtatgctggcatatatttctcaattgttttctcaacattttgaa
aattattgtccaggctgtagatcatgttgtcagtggcttctccccatctaataaaatatgaagaccctctccaccttttggaggaaaatgctggtatctt
ggagtttgatactaccgtgtagaaaccaatatactaacttgtaagagacaaaagtttatttactccacgtattgttgaaattttatcataaaaactgata
ttctttgggaaaatgattataaaagccacaaattttaacatctattcggttgtaatttaaaaatacctgaattttcagccatttgcagtggctcatgcct
gtaacc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 492 170 NA intergenic
1779 chr3 156523377 156523378 RIP_Alu_chr3_156_02 0 - pAlu3-156322276 NA NA SINE Alu Yb7 agagggtgttagacaccaaatagtcaccttgtcaaggacagttgtgctggatctaatgcagcaaatcccaccaagtctttagaaggctagatgtcagact
tgctgtggacaaatcatcttttcacagatttcaaaaaagagtgccttattagtgtatttaacaaatcagagtaattttaaattgtttttctaattaaaaa
taaatgtttactataggaaaataaagtaccttaaaatatgaagaaaatttaattccacctataaccaagctgaatttatattgtgtttaaccgtatggac
ctactagacaacaaaactcacaatttcatatgatttaacgtactattttggtatctgtctctttttcctatgcgtatacagtgatAAGAATTTGCTTTTC
GGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACT
GCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAATTTGCTTTTCatttaatactatagagagattgtgaat
taaatatttatgtatgaatatattacttactagtttgtgttattcaaagttctcaaaattgtatttaaaattgcttagtcttttttacctgtaatttttt
tagctgctcaacagcaacaaaaaggcaacattaaatcggagtgaccactcttgtgttaagcattaagtataacagaaaattaaaaaattccttgatttca
aggcatttataatctcattgggaaaaggagattagtgttgcctgaatgagtaaaagtgaaacacccacaattccagtataaagtggtcttatattcagtt
acagattctaagtgctacagaagctcagagaagaaagaaatcaagattatctgaaatt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1843 chr3 164946877 164947175 RIP_Alu_chr3_164_01 0 - 238904 NA NA SINE Alu Yc2 actctgaaagataaatataagaatatatccgtgacattgattgaactttttaacagaacagaaaaattaataaccataaaataatgtattggtaatttga
caaattatagagctatttgtttattgaaacaaaaaaggaacaaaatcaaaacaaggacaagctacatcagtgaagaataaatgatattgattctttcaat
tcatgagtatgggatgtttttccatgtatttgtatcatctctgatttctttgaaaagtattttgtagttcttctaggagagatctttcacctccttggtt
agctgtattcctaggcatttaatttttttgtggctgtcataaaagggataatgttcttaatttgactctcagcctgaatgtcactgatgtatAAAAATGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATGCtactgatttttgtacaataattttgtattctgacaccttgctaaaaggtttacacagatgttgttctagaaccaagaaactattaaattagaag
tagaaaaaaattatgcatttgtttagaaattaataaaaacacttctaattaactcatgaatataagaaaaaatttataatttttaattatttattttaat
ttttgactcttgttatgaatatacaccagtatatatttattgtatacatgtgatattttgataaaaccatacaatgcataatgattaatcagggtaattg
tgctattcatcacctcaagcatttatcatttctttatgttagtgacataatttggatatttgtccccactcaaatctcatgttgaaatgtaatctcca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1859 chr3 167030378 167030379 RIP_Alu_chr3_167_03 0 - BCHE NA NA SINE Alu Yb8 cctttaatgctccttgggcggtaacatctctttatgaagctaggaacagaacgttgaacttagctaaattgactggttgctctagagagaatgagactga
aataatcaagtgtcttagaaataaagatccccaagaaattcttctgaatgaagcatttgttgtcccctatgggactcctttgtcagtaaactttggtccg
accgtggatggtgattttctcactgacatgccagacatattacttgaacttggacaatttaaaaaaacccagattttggtgggtgttaataaagatgaag
ggacagcttttttagtctatggtgctcctggcttcagcaaagataacaatagtatcataactagaaaagaatttcaggaaggtttAAAAATATTTTTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGACGTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTTTTTCCaggagtgagtgagtttggaaaggaatccatcctttttcattacacagactgggtagat
gatcagagacctgaaaactaccgtgaggccttgggtgatgttgttggggattataatttcatatgccctgccttggagttcaccaagaagttctcagaat
ggggaaataatgcctttttctactattttgaacaccgatcctccaaacttccgtggccagaatggatgggagtgatgcatggctatgaaattgaatttgt
ctttggtttacctctggaaagaagagataattacacaaaagccgaggaaattttgagtagatccatagtgaaacggtgggcaaattttgcaaaatatggg
taagtgctgatttttgtcattgttctc Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.PMID: 11700292.
- Muratani K, Hada T, Yamamoto Y, Kaneko T, Shigeto Y, Ohue T, Furuyama J,Higashino K.Inactivation of the cholinesterase gene by Alu insertion: possible mechanism for human gene transposition.Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):11315-9.PMID: 1662391.
Direct sequencing NA 0 0 0 Acholinesterasemia exon
1865 chr3 167845015 167845016 RIP_Alu_chr3_167_02 0 + pAlu3-167764341 NA NA SINE Alu Ya5 atgttgctaatataaataaattttcaggaagttgaaataaatgaagttattgcaactttattttttgagcaatacttttctgaaatagtatccatgttaa
agcaaagtgttgattacaataatcatgttaatatcaataatcaattagtaaatccatgctaatgtggatactaagttgtttgactgtagatgcttttcat
tttcatgatccagtggtttagatgttgaattacattcccagcaataattcagtaggagatatatgtcccagccttactgtacctcagactgtttcaactt
tttgttagtgaccttggcttgcatagcagtctccatgtggatgttgagcatggtttatttggttggtattcagcattttctactttcctttAAAAAGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATTAAA
ATTAAAAAAATAAATAAATAAAAAATAAATAAAAAAAAGGGGGgagagaggcactacatttcacatgagactctacaatgactatatctttctctctctc
ttcacttgtctctgaggcctgagtcacagtcagctcctgttcattggttaaggtcactggaaattgaactgtaggtgaccactctacatgtttcaccaga
tttatgtcatagaatgagctactctattagcatcctactttcagaatattcagatgatgattgacgtttccaaatgctctcctccctctcccacatgcat
acagaaaaacaaattcagaaatcacatattaagaattaactcagcatttattgttctggtggcaacacatgatacgtgcgaggtcgggtcggggagctag
agattcagtaattctatataaccaggcttcctat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1865 chr3 167872925 167872926 RIP_Alu_chr3_167_01 0 + 21709 NA NA SINE Alu Ye2 aatttgtgtatttttgatggagtcggggtttaaccatgttggccaaactggtcccaaactcctgatctcaggtggtctgcctgcctcggcctcccaaagt
gctgggattacagttgtgagccaccatagaggtggaggcaggagaatcacttgaacctgggaggcagaggttgcactgagctgagatcatgccactgcac
tccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaatgctgactctcacatcactggtgatcttcctttgctaaaccccaggtct
aatgtgcttaggtattcatacaaacctactagtcatcaaataaatatggaaaacatcccacataaaatatcccttttatggagttttataacAGAATCAG
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATCAGaatcctctaaacaaacctgtggtaaagaaatctgcttaactttgtttcacactctctctcaaagttattttaccctagcatt
tttttgttttctaaataatagctcataaaactatgattctatagaacaaattctaagaaataccgcattcactagtaaatcgagaggtttaatttagggg
aaagaaaaatttggaacagacaatggaataatgaagactatagaagagtagtgtgatcagctaaaaaaaactcacacattcaactcttccatccttttca
tttctttgcaagtctcaccctgctgctgcccagcagatgtcaaaatgagcaggaaaaccacattgctatacagagattccttaatggcaagctcttgctt
ccctaagact Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1889 chr3 170957023 170957024 RIP_Alu_chr3_170_01 0 + pAlu3-170876349 NA NA SINE Alu Yb7 ccaaataatgacctaaattttaattttgtaactgaaaaacattagaaagcactattaattacagatatctacttagcatttgcctctgtgctggtgaaat
catagttacaattagctggtctgttctctgccccaacagcactccatcatgcattcaacaaacaattattgagcacctgttatgtactaggcacctggga
tctgtcaatgaactcaatgacttgggttctgcccctatccttataacccagtgaagaacacagataagcaaataatttattgcaaattaggaaaacatgt
tataaaggtaatcaacagaagatcataagaggaggggtaacctgcttcaaaagggggtcagagaggattctgaggaggtgatatctaagttAAGACTTGA
GGCCGGGCGCGTTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAGAA
AAAAAAAAGACTTGAGggaggagagaaggggccaggaactacaagtgcaatttaagcagagaacccaggatgagagtttggtacaaaggaggctggtgtg
gctgaagcacagtgcaagaaaagaagagggtgtattagtttgttttcacactgctggtaaagacatacccgagactgggaagaaaaagggattttattgg
acttacagttccacctggctgtggatgactcagaatcatggtgggaggcaaaagtcacttcttacatggcggcagcaagagaaaatgagagaagaagcaa
aagtggaaacccctgataaacccatcagatctcgtgagacttattcactatcacgagaatagcatgggaaagactggcccacatgattcaattacctccc
cctgggt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1926 chr3 175893439 175893440 RIP_Alu_chr3_175_01 0 + 239031 NA NA SINE Alu Yb8 cctcatgctgctgttctggaagctgtattttaagtcttttggcttagggccactatggatatatttctgagatactaagggtaccaccaaaaaagaatgt
tcggaaacctctatactaggacaaattactaagcccattcatgtttcagaatttacatctttaaaatagatgaagtatatcctgacacataagaaaccaa
taacaaacttggctatgtgttgtttatatttcatatgcttgttaggaggaagtatatatgtaaaaatgctgtgtaaaatactgcaatcattattgtctct
tttaaacaagttttcatattttacttcattttgttcctgaactcaacttgataataaaattattggtataaaaggttctatttgtaAGAAAGGTATGAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAGAAAGGTATGAGTgagattcaacatacagaatataaataccaaccagtaaaataataaatgataattaattcctctgtatcactttaagtc
tgtgatcaaagtagaagtctaagttcatgatatctcttgtggattaagacccagtaggcactgttcttccagtactgctcttagggccatcaggagttaa
catccaatcactattcaccaggatgttcttggctttaattattattgcttaactttggttcatttagaactgaatgctaaagtccatgcagcttgagtgt
atgaaaacctgttttatgacatggagagtttactgcattcacttttcttaattcatgtcaaactttcaaatgttttacttggtagaagtggaccataggg
tgttgcat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1928 chr3 176098323 176098636 RIP_Alu_chr3_176_01 0 + Ya5HS4.75 CAGCATTACATACAATAGTTAGGAGC GTGATATTTGTCTTTCTGTACCTGG SINE Alu Ya5 ttgatcattagagaggtgaaaacaaacatcttgaaatcaaaactagagatataatttcacctcagttaaaatggattatatccaaaagacaggcaataac
aaatgctggcaaggatgtggagaaacaggaacccttgtacattgttggtgggaatataaattagtacaatcactatggagaacagtttggaggttcctca
gaaaactagaaatatagttaccgtatgatctggcagtctcactgctgggtatatacccaaaataaaggaaatcagtgtatgaaagatatatctgcactcc
tataattgtcacagcattacatacaatagttaggagcaacctaagtgtccatcaacagatgattggataaagaaaatgtggagtcctattcagccatAAA
AAAAGAATGAGATCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAT
CCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGG
CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAATGAGATCttatcatttgcaataacatgggcagaattggagattattatgttaagtgaaataat
ccaggtacagaaagacaaatatcacatgttctcacttctttgtgtgacctaaaaatcataataattgtactcatgatatagagagtagaaggttggttac
cagagattgggaagggtagaggggggttaggaggagggtagatagataatgcgataataatagataagtaataataaataaattaataataaatagaatg
aataagactgactatttgatagcacaacagggtgactatagtcaataataacttaatggtatgttttaaaataatgtgaagaatataattcgattgtttg
taactcaaaggataaatgcttgaggag UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
Candidate screening|Library screen NA 0 0 0 NA intron
1940 chr3 177625734 177625735 RIP_Alu_chr3_177_01 0 + Ya5ACA1130|pAlu3-177545061 AAATGCCTAGTAGGAAAAAGGGT TCCTTCCCTGCATTCATTCT SINE Alu Ya5 gttccctaacacaatctattacacataatgaataaaaattaatctcgtggattaaagagataagtcagacacaaaactgtaaaacaggaaaggaaaatga
taattaatttaccttataaaattaaaatcttcctttagaaagaaataattaatgaagttaaaaacaaatgacagtttgggtgaaaatatatgtatcttac
tcaaaaggttgatttctatgagaaagaacttatataaattaacttgaaaagaaaaaaaaaatgcctagtaggaaaaagggtaaagaaatataaacaggac
actcacagaataaggaatgaaaagctactaaatgtatcaagcaattatgagaaatgtcaaaaaagagagattttttccccctgattAAAAAAAAAAGAAA
TTNNNNNNNNNNAAAAAAAAAAGAAATTaaagactaaagaatgaatgcagggaaggattcagaagaactggccttgacatgcattgttagagtgaatgtg
gtccatggggtctaaatggagacagtctagcagtttttactacattctaaaatgcatcgccgggattggtcgctcactcctgtaatcccagcattttggg
acgccaaggcgggtggattgcttgaggtcaggagttaaagaccagcccgaccaacatggtgaaaccctgtctctactaaaaatacaaaaactagccgggt
gtggtggtgggtgcctgtgatccgagctacttgggaggctaaggcaggagagtcacttgaacctgggagtcggaggttgcagtgagctgagatcgcacca
ttacactctagc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 0 0 NA intergenic
1955 chr3 179593747 179593748 RIP_Alu_chr3_179_01 0 + D1 TGCTGATGCCCAGGGTTAGTAAA TTTCTGCTATGCTCTTCCCTCTC SINE Alu NA attcagttaacattactcaaattggcaaaaaaaactagtcatgcacaagacaattattactaatgtgtttaaacatccttaaatacgttctgtttcactt
ctttcactttatttggataatcaactccactttaattttccaatactgctaatcagggttcaatccccaaaagcaagtaaaactgagatgtcccttaatt
atcaagagatcctactcttcagatctgctgatgcccagggttagtaaaaaatgtgtcagtactcagattagcaatacttgtggtttattttacataaaat
acttctccactggtatttcttcattgattgatatatgatagctgatatcagtgtacatcaatccaaaatatgctgtggtagatttttgcttaAAAAATGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAA
AAATAAAAAAATAAAAAAAAAAAAAAAAAAAAAATGGgaagaagtagatttcggcaggccaatgctgcccctgagaataaaaagaaaaaaagccacataa
catatggtaatcatctgtttgaagtcttcacactgctacaacagaaaagagaaatggaaaaaccataactccagagagggaagagcatagcagaaataca
cagaattctgtagttatatttacccttgtggcttttggcaattttgtgcatgggccaaaggatgaatgttatatgtgtagattaaatgatatccagatac
ctggtaaaacattatttcttggtgtgtctgtgagggtgtttctggaagagattcacatttgaatcagtagactgagcaaagaatatccatcctcaccaat
gtgggcagcatcatgcaatccattgatgg Other - Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.PMID: 8576959.
- Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.PMID: 7714898.
Library screening NA 0 0 0 NA intergenic
1976 chr3 182444604 182444918 RIP_Alu_chr3_182_01 0 + 32944 GAGATGGACTGGGAAGAAAGCAGG GCTGCCACATCAGCTGTCTGTGG SINE Alu Y tcccttcagcaacctgtttagcctccctgtgcctcagtttcctcatctgtaaactgcaaatgttggtgctcatcttatgtccctacactgggttatagtg
cgatttgaatgaaagaactttgtgtaccacgtagaacaacacagttctcactatgattaggattaatcttaatattattgtaggtagttaagttagaaca
atagataaagaagttaaactttacctaagagtagaactggccttagttacctgactgaatacatttcaaaagttttatcaccccttattttaaataaatt
gaatagtacagagagatggactgggaagaaagcaggacctagaggtgacagagtcaaaccttattgcctgacccatgtagacacttAAGACATGCAGCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGACATGCAGCTTacatgaatgagccatagagatatctaaattatttgaaatttctgcattacactttttaatttctttctaagt
ttgatacaagaagaatatatttgttttaaaatgaagagcatcattatttaaaagaaaatacaacaaccaaaataaaccatagataatcagagtgccacag
acagctgatgtggcagcagataataggggaggaaacctggggagggatagaaagagctcaaattcattgggcgcttatgttctagacactgtgataagtg
ctttctacacctggttgtatttagtcctcttgacaagtctaaagggtagatgctggtagtatcccattttatagattaggaaactaggacataagagaga
ccaagtgatttccc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
1984 chr3 183477560 183477561 RIP_Alu_chr3_183_01 0 + 239223 NA NA SINE Alu Yb8 acaggccctgatcccgaggagcactgagtgctgtccagctgctagaactggccagtgctgcatcttcattgcccttcctctggttcagttccctgtccag
aagtccagggagtgacagctgtgtttgggcaccgcgtagcaggctccagaggggcctgcactgcaaaacctccctgccagggctcagtggggaaggcact
tcttatcacagcagatttccatccacctgtttccttggccttcctctctcagcagagtatactatacagctttttaattttgtgggtgagaaggttcttg
ggacctttttcttattcttccctaagtttctcatcattttggatcagcatctccctactccttactgggattctcctatttcatccatgAAAGAAAGGCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAGAAAGGCAccacagaacaatatttgtattttcagagggctgagtttaattttgaggcaaaaaaattatacagtcttcaaaagatgtctat
gattatgaaattctcaccatgttgtaactcagatttttcttaaaattaaaaagtatacatttaaaatgttcatgtttttccagcaatcaatcttagcatc
actaaagataacctgatatgatatgcctcctgggaaatgcaatacatacattgattcacctaatttttttccttccatcatggtattacttatgtactgt
aaaagtcaaagtagttcaatgagttttgaaaaatctatgcacccatactactgtccccaaatcaagatacagaacttttccatcacctcaaaaattctcc
tgtgccc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2007 chr3 186500045 186500355 RIP_Alu_chr3_186_01 0 - pAlu3-186419268 NA NA SINE Alu Yb7 ataagccgagatcgtgccactgcactctagcctgggcaacagagtgaaactctgtctgaaaaaaaaaaaaaaaaaagaaaagaaggaaatcctatcatat
gctacaacacagatgaactctgaggacactgtgttaagtgaaacgaaccagccacaaaaagaaaaatattgcatgattccacttatgtgaagtatcaaaa
atagtcaaactcttagaaatgggaagtagaatggtgctactagtagaatggggaagagagaaaaggtgagttattcaaggggtacagagtttcagttttg
caagatgaagaagttctagagatctgtttcacaacaatatatataccgttaacactactgtactgtatctttaaaaattgttttaaaAAGAGAGAGAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAGAGAGAGAGagaaaacagacagacatacagagaagatagcaatatgaagatggggtcatcgactgaaatgttgttacacagcacat
tgctgtacttcattctggcagccctaggaaagtaacacaagggcccacagaagaaagcttgcaagtgagtgcaggctccttttgtgactggggcttcccg
ttattctgaaatgttacattagcccacattcagcctttaagaattcattacagttttagctgctttcttcttacctacctttacggtgccttctcttcct
cctatgctctgccaaaggtaacacagtttctgtgtcctgtctctcttcaaaagggcttgcctctctttggaatttcagttcatctgattgccttgtgacc
tcaactctct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2015 chr3 187512325 187512647 RIP_Alu_chr3_187_01 0 + Yb8NBC181 CATGTACCTTAGAATTCCACTCTCA CCCCAAAGTTTATAGTCTGTTGTCT SINE Alu Yb8 ggtaggagcatgttttgcattcacccagactgtcaggactatccacatacagttctgtcctaaatcgggtgttcagaaagtttttctctttgatcaaggt
taccagtgccctaagaagttttcagtccaaaattgtcttctatactttatgtgccaagaactctgggacctaaaccaagcactgttcctagtgtttgagc
aaattcaaagccttttaaagggaaaaatttggccctacacacagacacctttgttgccttgtcagtgtgggacaggggtgcgttccatctgaacaagcag
acaaatcagagacttcagtgtttacagcagaatattagttgtgctgccaggactagaccccaaagtttatagtctgttgtctagttAAGAACACAGAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAACACAGAGTAtttgagcattagaccattaaactgttaaactccgaaaaaactataaatcaacattttcaaaagt
gaatctgaaaatccatatatgagagtggaattctaaggtacatgataactcttcattcctcaaagttctctatgagcttctcaaactgtaatgtgcgtat
gagtcacattgggatctggtaaaaatgcagattctgtaggactgggccacagcctgagattctacattctgaataagatcctaagtgacaccaattttgc
aggttcacggacctcacttgatacgcaggctctaagcaatgtccctgtggatctggggctgactgctgaggcttgcctgtcacaacccagaaaagaccac
gatgccgaggacaaaggaacat UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intron
2029 chr3 189381300 189381301 RIP_Alu_chr3_189_02 0 + pAlu3-189300625 NA NA SINE Alu Yj ccctgatggcccaagggcccttcccctttgtttctgtctggggaatgttctgtctcctctttcttgaacctccttatattccctcaagaagacttaaggc
aaaaacaaacctgaacttactatgtgtggtatttttgtgttataagtgtaggacctagtcatagtaacacatttcaaaaatatggaaccgtataaagaaa
atgagcatcactcataaatcactatttagacacaagcattgtttacgtttctaatattctttctttagtggtgcttttcatgattttatgtgcatttgca
ttttactgactaaatattactatacaaacattttcatatcttgccacttcccctaacaatacagcccaagcagcttctcatggcattAAGAATTGTTTGT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATTGTTTGTacatgtaattttgaatggctgtatgctgtttcatcttaagaatataccataattctaatttttcatc
attataaatagcactgtgacgaacatccttcttaacaaaattctttgtctgcacctatgattattttctaaggtagattattagaatttgaaatgccttg
cacaaaggacagtaactttttcacccttagtttcagagagaacatgttgtctctggagaaacacagaaacatgaaaaagcataaagaagaaaataggcct
ggcacggtggctcatgcctgtaatctcagcacttttggaggccgaggtgggcggatcacgaggtcagggattcgagaccagcctggccaatatggtgaaa
ccccgtctctactaaaaata Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
2032 chr3 189787551 189787866 RIP_Alu_chr3_189_01 0 + 511|pAlu3-189706776 NA NA SINE Alu Yb8 atatgtgacagttccctgggagtttctcccctcctcgtaggtatttttagcaaaatagtccttaaacattgttttttttttttttaagttggagtctcgc
tctgtcgccaggctggagtgcagtggcccgatcttggctcactgcaacctccacctcctgggttccagcaattctcctgcctcagcctcccgagtagctg
ggactacaggcacgcaccatcaggcccagctaatttttgtattttttagtagagacgggggtttccaccatattggccaggctggtcttgaacacctgac
ctcgtgatcctcccacctctgcctcccaaagtgttgggattacagacgtgagccaccgcgcttgccccttaagtgttgttttAAAGAAAGTTGGCGCTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAGTTGGCGCTCTactgaagactggagcccaagaagacatttatagggattgtttattttcatgttgttactacactcca
tggtctgcaaaaccagagtgccagatgttaaattctatcagcataatgcatctttaattaaatattatatacgccatacaattaataatgtggtctgttt
ccaaaactttattaagaaattaccataattttgtataataggctaataaaaaggcactgtactttgaaacagcctttcgtaaagtggttatatgatttgt
atctgttgaatttggaatttagattaagagattgtgggccagaattatctgatgcaatgtactcaggactttaaataagttgcgaatcttgtagggtcta
ctattatttggcttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
2045 chr3 191438122 191438411 RIP_Alu_chr3_191_02 0 - pAlu3-191357341|Ya5ACA1048|10422 ACCACGGTATGACCCACACT GCTGATGCTACTGTTGTCACCT SINE Alu Ya5 gttagaccacggtatgacccacactttgttttccgtgagttattaaagatgtcttgagggaagaatgaaagttctgcaacctgtagaggacccataatgc
cctaactcattcatttttaatatgtgtctaaataaacccggttaaggagatatatgaattacattactcacttcggggctttataaggttcttgcaaaaa
attaacaataatactataatttatcaactctaagacacattttttcacattttaatatctctaaaattagaattcatcttatagtgtcattttatattta
attagcaacttttttattttttagtgtacataaaagaatgatgtggttttggatcaatgtcatcttaaatttgattaaaaagcaaaatAAAAAACACAGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACACAG
Gtgacaacagtagcatcagcacttctaaccaaagtaggagatcttcatcaagcaccttatgataaggaaacatttatgattgctggagaccaaacatatg
ctcccttaaaatatgataataagaaactataataccccacttcaaagtatgcctgtttggcagaagcattattttgagatgattattttgagagactgag
gacacagaagaagctctgaaaacacgagtagatgtaacagaaatttatatctatgaagaaatctccatttgtaaaggtgtctccctctctacaagagaga
aaaagatgatctaactcaccgatatgcttatattaatagaggtggcaccaacttaaatgtaactttagatttaaatctgccttaattct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 55 715 413 NA intergenic
2048 chr3 191773350 191773639 RIP_Alu_chr3_191_01 0 - Ya5NBC51|Ya5NBC345 ATATTCCAGAAGTTTCCTTACATCTAGTGC AAAGCTTTAAGTCTCCACCATCTCT SINE Alu Ya5 tagcatttcactaagaatactgcatgcagcgggagggagaaagtcctccaacacttccgattactaattactccattcacaatttccatgatttcaatca
acctccaagtaaagctacaccctcctcttagacttgaatatagattggttgggtttctactgtgcctcaagaaatacactgctactagcaaaaacatttc
acagctcagtgtcaattgcaaacagcagattgtttctgccttagaacgtataaacttgcaaaagggggtccagagtcttacacttttgcccgccatctct
tcttccttcattatcctgaggggcatgcaaagctttaagtctccaccatctctgctgtacactttttttcagaataaaagtatcctgattaaCAAAGCAT
TCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC
TACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG
GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAACAAAGCATtaa
ccctggacatgctgaccactctcatggctgtaggggcactagatgtaaggaaacttctggaatatttaaggtttctattttctctcaccattttaatata
ctcggaaggagggaaagagtaagaatgtaaaataaacaaacaaaaaaacctagaaaacattaactgttcaaaaaggaaaccattcaatgcaaagctcagg
aaaaaaaggggggagtatttaaatgtggtattaaaaatggtttagcttctttggtaatctgaaaaaagtatatagccgggtttacatcagatccaggaaa
cccgtgtaggaatattttatctctatttttctctttgcattttatgcctctctctctctttttcctactatctctctttttcaaaaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate sequencing|Candidate screening NA 60 437 140 NA intron
2051 chr3 192152509 192152823 RIP_Alu_chr3_192_01 0 + pAlu3-192071734 NA NA SINE Alu Yc1 acacactggattgaataaatgacagataccacagaataatatgttagtaattatgcagatttagtaattgaaattatccaaaataaaacacagagaataa
ttttttttaagtaaacagtgaactggtgacctgggggaaaatttcaagtggtctaacatacatattattggactccctaaaaggtggggcagaaatgagt
atttgcaaacacaatggtaaataattgccaaatttgatggaaactgtaaccccacagaaccaagatgctcagtgaacttcgatcacagaaaacattaagg
aaattacatcaagacatttaataatcaactcatttaaaaccagataacgatgttttaaaagtagttgaactgcaggaaatcacattgtataAAGAGTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAGTGTAaagaggaagacaggtgagaatgtcagcaacataaagttgaaaacaatttcagaagaaagaggaacaacatctttaaa
atactgaaaggaaaatactgtaaattaagaattctctacctagcaaaaatacctttaaaaaattaaagttacagaaattctttttagacataaaaaccca
aaagaagatatcactggcagaaatgcagtacaagaaatacaaggagactacttcaggatatatatacacacacacacacacacacacacacacacacaca
cacaccagttgggaatacaaagaatcaaaatcaaaatggtaactcttggctaaatgtaatattttttatttaaaatacgttggggtgatcagacccaaca
ccaggtcgtggggg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2060 chr3 193338799 193339125 RIP_Alu_chr3_193_01 0 + pAlu3-193258024|22416 NA NA SINE Alu Yb8 gtatcttgggggacaatccaacctccaggtcttggttgacttacactagtcaacatatctcaagtctctggccatggtcagtcactgaagtgtggacaga
tgatctaaatcaggccaacgaaatgtaagatgtcgtctgggggattctaatagagaatagatgatataagcatgcaggttctgaaactactaaaggaaat
tctgcctctaagggagaagttatacatggaggtggacagagctgagagaactacaaagtaagcctcgatggtgatgctgtgtacctagatattcgagatg
aagcgccagtttggtttggggattctgtctgagcaaccagaagcatcctagcagatacagatgttcaaacaaatacaaaggctgtattGAAAACCTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACCTTTGAgtaacttttcgtttttattgatctcaactcagtttttcttccacctccttttctgaacattc
ttcccaaccaagccctgttttccaagtatccatctttcattcaaatgatttcctctacttgagaggcctttgtcgtccccctttatcactcagcaaatat
ctgttctttttcaatcgctgtcttgcctctaatccctgatgatgcctttgttgcctcctcagtggtatataaaatcttttttgcatttatcatagcacat
acttttaggtattgcattatttatttatgtgtctgcctttgttgttgttgttttgagattgcaattcagtgtatgatgcctaaactcaactgagcctcta
gttggtatgttatgaataaaagaata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
2061 chr3 193545896 193546193 RIP_Alu_chr3_193_02 0 + pAlu3-193465121|13748 NA NA SINE Alu Yc1 ggcagaaacatcttccaagaaatctttgcatgttttgaagcttttagatttgcatcctctataaacctttcatcaaaaactatgttgccaaaatcaatac
tatggcctactaggtttattcattaattcatcacatatattccagacattgtgccaggcacttgcaatacagtggtagaaaggacagagatggtacctgc
catcatagtagttaaagtctaaaatagataaaagtaaccacatgtgtaatatgtatccatctttacagaccaggaaactgatactcaaagatactgtttt
cccaaggttataaagtcagctagtgaaaaagctaagctgtgaacctagattctggtggctacaaagctgtaaaatattgttgctcttAAGATATAACATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
ATATAACATAaaattctaatgataacaattcaagtagttgtgaagaaagtaggaaaaacagactataataagaaaatgtgaaaaccttacaaggaatgtt
ttagccaagtagaaccatcctgctcaaaaggtaaaaaatctttagtttttcttagataaaattacacacaggcaacacaagcacacttatttgagttgat
ttagatatgctcaaagctttgcacgttgttatcattaatacctaaataagaaaatatgactgcctaattccaaaaatattaagtggatctatagaaataa
acataatgtggaaagattttttttttttagaaattagggataaaaaaggacttgaaaaataaaatgattattttgtccttactattctctacttcaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
2081 chr3 196096036 196096337 RIP_Alu_chr3_196_01 0 - Ya5-MLS29 CGCTCATAGATCTGATCCAATCTG GAATGCGTTGAGTTTCACAATGAC SINE Alu Ya5 tcattatttactttatattgactttgtaaatgctatttataggtgagccatgatgagtactacaattccttttctttctcctcacaactttttgtttacc
ctggagttaataattgccttcttttttcccatttgctaaggtttctatgtactaaacaccaatttaaactctcttgaatgtgtacattttctcttaatat
gttcaagcacactaagaattctgtcaatttaattttcttaaagaagccgctcatagatctgatccaatctgggagttctttcacctctttctagattcag
atttcctctgttttgaatcccatattcttttctttctcagctttctcaatcattttggtgaaacaagttctttctctccttttctAAGAAAGAGCGCATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAGAGCGCATAgtaagtaaatttttgttcctgtcctgacacaactgaagaagtttttagtttattctcatacttaattgatgtggaattttaggt
ggaaaaatatcatctctcaattttgaaagcactgtgccattgtcatgttgtttccaacttagtcattgtgaaactcaacgcattctgattctgattcctg
tttctttgaatgaaatcagtttttctctgtattagtcagggttctccagaaagatagaagcaataagatagatagatgatagatagatagatagatagat
agatagatagatagatagatagggattttttagcagaattggctcatatgactacagaggctgagaagtctcatgacaggctgctgtctttaagttggag
a UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
586 chr4 253968 254238 RIP_Alu_chr4_000_01 0 + Ya5ACA1185 CAGCTTAAAGGCTTTTCCACA CCTTTAGACAGTCCGGAAACC SINE Alu Ya5 gcagagcttgcagtgagccaagatcgtgccactgcactccagactgggggagagagcaagactctgtctcaaaaaaaaaaaaagagagaatttgaagtct
ttgccacattttaatttttcatatggcttctcatcaatatcatttatcttatgtttagaacacagtgaggtgtggttaaaagctttctcatatttttcac
atttctggagtttctctccattatgaattatcttacgattagaaaagattgaggaacatttaaagactgccacattcttcatattggtaagacattcctc
cagtacgagttctcttatgtttaagaatgctggagtacagcttaaaggcttttccacatcctttacacttgtatggttttatctccagtAAGAATTCTCC
CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTA
GCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGAT
CCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCTCCtatgtacataaaggtttcc
ggactgtctaaaggctttgccacattcttcacatgtgtagggtttctctccagtatgaatcctatgttcaattagggttttggagctattaaaggtttta
tgacattctaaacatttatagggtttctcaccagtatggattctcttacgtttagcagaatttgaggatgaggtaatgactttgccagattccttacatt
tgtaggtgttctctccattatgaattttctcatgtttatttatgggtgaggaccgtttataggctttcccacattctttacatttgtaggattcatctcc
catatgaattttcttatgttcactcagggttgtggaccatctaaaagctttgccacattcttcacatttg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 378 96 NA intron
607 chr4 2904860 2904861 RIP_Alu_chr4_002_01 0 + ADD1 ATGTAATTGTTCAGGACATGTGGC AAATAACATCCAGAATCTTCAGAT SINE Alu Yb8 aaaccaccctcacagagtgaaattcagaaaaaaaattttgtttcaataaaaagattttgaaagatttcatcacttcaacaaaactatagttaaaaaatta
aaatattatattaattgaaggacagtaacagtataatgagggagcaaaaatagagaaagtagctgacattgccagaagataagtcaaattctgctttttc
ccacatgtaattgttcaggacatgtggctcagaatatgtgaattagtatagtaactacagcagagtctctctgggttgtgttatttgctcaattgcgaga
tagcatacttataaaattatttctagattcactcctgaaatcttaactgcagtctgctttgtggaatttcttcttggaagaacttgtttaaGAGTATGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTTCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAGTATGCTgattgatatttgttcatgggccatctgaagattctggatgttattttattttattttttgaggcagtct
ccctctgttccccaggctggagtgcagtagcacaatctcggcttactgcacccttcgccttccgggttcaagcaattctcctgcctcagcctctggaata
gctgggactacaggcacgcaccatcacacccagctaattttttgtgtgtgtgtatttttagtacagacggggtttcaccatgttggccaggctggtctca
aagtcctgacctcaggtgatctgtccgccttggcctcccagagtgctgggattacaggcgtcagcctctgtgcctggcctggaggttattttaaatcgtt
ttttttttttgggatgaaaaca Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.PMID: 11700292.
- Goldberg YP, Rommens JM, Andrew SE, Hutchinson GB, Lin B, Theilmann J,Graham R, Glaves ML, Starr E, McDonald H, et al.Identification of an Alu retrotransposition event in close proximity to a strong candidate gene for Huntington's disease. Nature. 1993 Mar 25;362(6418):370-3.PMID: 8384324.
Candidate screening NA 0 460 118 Huntington disease intron
616 chr4 4159306 4159625 RIP_Alu_chr4_004_01 0 - pAlu4-4033862 NA NA SINE Alu Yb7 gacatggtctctggctgtgtcacccaggctggagtgcactggtgcaatcatagctctttgcagcctcgaactcctgggctcaagtgatcctcctgcctca
gcctgccatgtagcaggactacagatcctacagatgcacatcaccatgcctagctttttttttttttttttttttttttttttttttttttttttttttt
tgtagatagggagtctcactgtgttttcaaggctggcttcaaactcctggcctcaagtaatcctcccacctcagcctcccatagcactgggattacagcc
atcacctaccaatccaagccatgagtttggctttggatgtaacaaggttgaggtgttcacgagttgacaaatggaaaaaacAAAAAAGAAGTTGAGTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGAAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAAGTTGAGTGTTtaagactgctgtttgaaggagaagtctagcctcaagacaaaagttcaggactcatcagctga
gaaatggcactgaaaattacgtaaatggatgagctcagctagcaaacaagaccagagagagcagaaagtccagagagagcagcactgggctatgcacctg
gcctaatgctgccccgctcctcccaatccctgtgttatgctggagagggttcagcctctggtgagtttcaccaaacccccacatctctttcttctgagac
cttctctaaaatcccgtcttttatacttagtgaaatgggattctctttttcccatccagcttaagcaaaaacttttgactatgagaagaatgaggatgca
tttattatctgttctgcat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
658 chr4 9628578 9628809 RIP_Alu_chr4_009_01 0 + 2013 NA NA SINE Alu Yc1 ggaaataataatgagatgaacttccaaggctacaacactcaccacacaaaaagtggttttgagaattggatgtgagagaagcacccacatagagcccccc
catgggtcatctttcaagaaatgctccttcccctattcctaaaacattttctatttttcaaagggtttggatgtcctctgccttgcttggttctcaagca
atcttatgggaaaaaatgctcaatatcactaatcatcagagaaatggaaatcaaaaccgcaatgagatatcatctcacccctgtcaaaatggctattatt
aaatgacagatgctggcaaggatgcagagaaaaaggaaaacttaaacactgttcatgggaacgtaaactagtatagctgtgAAAGAAAACAGTATGGAGA
GATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCTCAGCTACTC
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACGCCAGCCTGGGCGACAGAGCGAGACT
CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACAGTATGGAGAtttctcaaaaaactaaaaatacaattaccattcaatccagcaatctcacc
tctgggtactactcaaaggaaaagaaattcatacgtcaaagggatacctgtactcacatgtttattgcagtactattcacaatagtaaagatatggaatc
aacctaagtgtccatcaatggatgaataaagaaactttggtatatatacatcatggaatactatttagccattaaaaagaatgaaatcatgtcatttaca
gcaacgtggatggaattggggggcattaactaaagtgagataagccaggcacaaaaagacaaatattgcatgttctctctcacttatatgtggaagctaa
aaaatttgatcatatggatgtggagagtgta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
658 chr4 9633103 9633408 RIP_Alu_chr4_009_02 0 + Yi6AH16|10548 AAGAATCAGGGAGAGGAGAC GTTAGAGCAGGAGTGAAAGC SINE Alu Yi6 atggtcaggcagttgttaaactgtctctctaaaataatagttggtcacagctggcaattattgggaaaggcagtcagtctcccaatagaaaaaaacctaa
aactggtgatcataagcttcccgacaagatctcaggagttgggcgagtgggctcaagcatatgcacgaagaggcaaaatggcagagtttacctggtatat
ggccttcctctgggaacttttgactggtgagggaaaaacgcctcaagtcagcatgtgcacaacgtcagtaaacacacggcgtgtgcggcccctcctaagt
gctggcaggccactgtgcatgcaaacagcccaatccaaggggaagaatcagggagaggagacgcaaccccctggaagcataacatatAAAACTCCAAGTC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAACTCCAAGTCaaagttcaaaccgtgcacttgatctctcaagtcgctcccttggtgctctccaagtgtactttacttcctttcattcctgctg
taacgctttttaataagctttcactcctgctctaactcttgcctcagtctctccctctgccttatgcccctcgtcaaattttttcttctgaggaggcaag
aattgaggttgctgcagacctgtatggatttgctgccgcggacacctctgtctctcaaagattccagatttgggtcagtattaaccttttgagccccact
ggacattctctagggattcttattcagaaagtctgaggtagggctcaagcatctggatttttttttttttttttttttttttttgagatggagtttcact
cttgt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 60 494 176 NA intron
713 chr4 16879034 16879335 RIP_Alu_chr4_016_01 0 - 689 NA NA SINE Alu Yb3a2 tcacctattctttctatattgggaaattcaggaatattaattctacaaagttcattatcattagtgagacgtttagaggctatctcataccgcttattct
ttctatattgggaaaatcaggaatattaattctacaaacgtcattatcacttgagtgggaaaaaggtgtaaagtgacaacaacctatgaatattgttgca
aacttaataacacctcaaaattcagcagaagcacagttgttggaaaatgacttccactggacccaaaagaacactagaaatgttttggaatcctcaataa
tgtcaggagaacatggccttcacaggagatcaggaactgattagagaggtaataggatgggaaataatatgacattataaattcaaaaggcAAAAGGATA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAGGATAagacataaaggcaacaaaatgaaataaggagggatcaggatgaggaaagggatgattaaaagaaagctaatattgcaatcagagaattaa
aatctgtatttgaggaagtaaagagtagaccttagtaaatcaaattaattatgtggaaattaaacttcagatgcattctgagacagagagagattatata
taagtggaggaaaaaaaatcatctgtatatagttaagttataggtaattttattttcttttttgtttattagtttcaaaaacatttcttctataataaat
aggtattaattttgaagcagaaaagttttttttctttccttcaaaattgtgtttttaatatacatttcattcctgggtacctatccaatgcaaacttcgt
t UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
763 chr4 23397951 23398254 RIP_Alu_chr4_023_01 0 + 238456 NA NA SINE Alu Yb8 tcgatatctaaagaaagctggggattgatcgaaactaagtagttgaaaatgcatctctatccatgacttgaaccacaaaggtggtgggaggcggggtaaa
ggaaagagggataggaacttggagcaggggcaagaaagagagaaaatttattgaagtagagaaagataattggtatctggaatttcctctgcaatttaag
gctgtcaggccagcatcttgcacatcttcccacattgaacacatcgctattacggaagcagagctctattctaggatagattaaagagctgataggtgaa
accagctgcagagagcatctgttttgtttttgtttttgtttttattttttttttatttcagagcaggagtccttgcagaactAGAAAAATACAGATTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGACGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAGAAAAATACAGATTCCAgagttcttaggaggttgtagtctaggagggagttttcacaaccttccaatctttaaagtgcactgagctcaatgaatcc
ccatgagtccttccaacacgtgacttgccatagcaactttatcttccaaaatattactggggtgaaaagacctggagcacagcttcacttttacccaagg
tatttcctattcattgccttattatttgactaacgcctgggtggctatgtttgcagatcctgtcttctaggctaccgtgaggagttgctccattacttat
ttcctaaatgaatagaactacctcttctcagtcatcacagcctaagcaaatggtttgaaatgataaacctgccaaacagcttgtggtcacacagctgact
tgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
784 chr4 26114899 26114900 RIP_Alu_chr4_026_01 0 - pAlu4-26126966 NA NA SINE Alu Ya5 tcaatgtgaggtccagaaacatgaggtctaacctgacgttagaaatgactactggctctatttatagatgaagatccattacctttaagatgaaaaaaac
gctttaagacaggggtgtcttatctttaggcttccctggaccacactggaagaactgtcttgggccatacacaaaatacattaatgctaatgatagctca
aaaaaaaatttaaaaatcgcaaaaaaaatctcacgttttaagaaagttggcaaatttgcattgggccacattcaaagccatcctggaccgcgggttggac
aagcttgctttaaggggtccatgatcactctccctagctttgtgtaatctagcgcatattcaagtgtaagacttggccaggggaactAAGAATGTTAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATGTTAGCAaagaggtcatattttttccccagacttttccttgtatcatctaaatataaatatctgaccaccacaataagaactcag
tcatgaaggtttaacgagcagaagaaaaccagaagccctgatttttgagttgtgtgatgaggaagaataaagggaaggacagccttgcagggaggaaaaa
gttctagaagagaagaaaagctgccagagccagctccaggccactgcaggaataacctagtcacactccttacccctttatatgatgatggtgggagtgt
ttctagatagttgaaatgtaagtaattatgagcatcctgactctgcccagcaccagtagacattatcaaacaggtaaagaagcaagaaattgactgacct
acatgctca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
800 chr4 28240569 28240879 RIP_Alu_chr4_028_01 0 + pAlu4-28252549 NA NA SINE Alu Yc1 ttttaaaaagtcatgtgacttattaacaaggcagttcttattttcaacttctggaggagaacataagagaaactgtagtgttagactcactgaccacatg
taaaatcaaacatgaggtctagactaagaaacagaaggcactaaagaagtctggtaaagaaaaccaacctagcaaccaaaaatggattcatgaaggtgag
tcttcttgttttttattcatctgatatgaaaattagttatttggtcagtcagttatgtaatctttactaattaaatgccaaatgtacagctttttgaaaa
ctgctacagattgtggacaagggttatgaggctttccatccaattaacaaattaatgcagtcatctacctaacttgactcttcagtGAAATGAGTAATAC
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAATAA
AATAAAAAAAGAAATGAGTAATACtaagagctagttgactcttgctgttaacttcctgagtaaatcctgaaaaccaataaacaatagtcggttttgcctt
tggcaaaaacaaaccaaagattaattaactggcatgatatactggaaacagatactcaagaagcacactgaattccctctgaatgttatagagggattac
aaaaattaaatagagtttgaaaatgatttatgtttagacagtgttgcctaaaggcaggaagagctttcctaaaagataaatttccctaaaattctttttg
cttctatggattattgccttataaaaacattagcatcctttgtagaacattttctgtttgtactttgccaagaattctaagcaaggttgttaagtctgcc
gcatcatttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
820 chr4 30882096 30882403 RIP_Alu_chr4_030_01 0 - pAlu4-30894070 NA NA SINE Alu Yb7 atccccatcgcttttttttccagagtgaattagtcatagataatcactaacaaatgcacacctattttattatagaactaaagaaactggtattgtttaa
acaatgcctgactgccttcctcctcttgaattagattcccttacaatgtcaaaaacaaatactatgaaaaacaatagtataatttatttctaaactggat
tcatgaaagatattaaatagccaagtcattttaaaatgaagcacaccagctgcaaattttacttgataaccattggttgagcggggcgggccaggggtag
ggggggaaacactagaaaccataagaagtcataatgattttatttattcatgatcttgtacacacactccctggtctgaaaaagatacAAGAAGCCTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAGGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAGAAGCCTTCAatttcaggttactgaattagataatttctcagtgtaacttcttcaagaattgagtgctgacagcatataccatggagagac
agatccatgatgagaggtctaggtaacagataatgggaggatggccagctaggcaattagagacaggcaaccagaactgtgatgataatcgtctggtggt
agaaatcacagcagatggctgaatgtaggaagaatgatcaatcacagcattgtttgtagtaactaaaatttggaaataactaaatgcccaccattagaga
aatagataatgagaacatggactattaatggaacaatgatcaaaaatagtatatacagggagagagagacatgcaagtagagagaaattggttttaagga
ctaaata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
861 chr4 36292487 36292803 RIP_Alu_chr4_036_01 0 + pAlu4-36304466|238945 GAGGTCTTGGTTGTGTCAGTGTTG GTCACTGTCCAGACAGACTTATGTG SINE Alu Ya4 aatgcttaatgtcttattcaagccattttactacagtctcaattagtgaatatattcataaatggtggttgtacggaggtcttggttgtgtcagtgttgc
tactaagttatgagatctgttcaaagacaaagaaatattgattttaatgtttcagagcttttaagactaaaattttttggagctaaacaatatattttaa
caagcaaaattttttaatttttaattcagttttcaatttttggtcaatttcatattaacaaatatcttctatattaattcaaaggattaaaaatattttt
caaattctttaaaaataatttttgcttattttaacaatttggtctttggtcctgaaacagtaaataattgagtaagtggctatAGAAAATATAACGGGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAAAAAAAAAAAGAAAATATAACGGGTAggtaaaggaaaaatgatttacttcttgtactagaaaagaaaagcttttatgaaatagcacataagtc
tgtctggacagtgactatttaagtctatcatcagaatatttccagtgccattgatctaaaaattagagatctagctttatttgtgaacttcgacaatttt
tagcaaatgtgttatattttattcacaaagtttatctgagagttacatacagtaagaaatacagtaaaatcagttttgtcaaagtccactcttggtcttc
caaaaagatatcatctctggatgtcaagcatcctcttatactttgtgttcaagtgaatattagttcaagctgacactaaggccagagacatatattgggc
agaaaaataaaaggga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping|Genome comparison NA 0 0 0 NA intergenic
864 chr4 36665326 36665655 RIP_Alu_chr4_036_02 0 - 16933 NA NA SINE Alu Yb8 acgttgggttagtaacgagacgagtactctagagaacttttgcatttaggacctctatcatgttaccgtgtgaacaagcatgggctaggccccatgtaaa
tgagatgagccatctcagccacacgttttggggtggtttgttatgtgacaaaaaaataatatgcttggattaagtagaaggaacaaaccctaccatacta
taaagaagggcactacactaaaaaaaaattcattttcctaatcaatattcaagcctttatatactttcaaggtcaatgatagcttagtaatcatcaacct
actcttgtggttactacttaacaaattctctaagaatggtgaaatttttctttctagaatgttcaggcattaaacattctccatttAGAAGATTCATCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGATTCATCCAaaagtgaagtaaaagggaaaggcaacatcttttttttttttattatactttaagttt
tagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccgtgctggtgcgctgcacccactaactcgtcatctagcattaggtatatc
tcccaatgctctccctcccccctccccccaccccacaacagtccccagagagtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccac
ctatgagtgagaatatgcggtgtttggttttttgttcttgcaatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaa
ctcatcattttttatggctgcacagtatt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
865 chr4 36829873 36830178 RIP_Alu_chr4_036_03 0 + Yb8NBC469 TGCGTGTGACACATGGAGT TTCTCAACAGTTCCCCAAGG SINE Alu Yb8 aagagttatagaaatgcctggatgcccagacaaaagtttgctgcagggatggggccctcatggagaacctctgctagggcagtgtggaagggaaatgtgg
ggttggagtcccaacacagagtcgctactggggcactgcctagcagagcttgagaagagggccaccatcctccagacctcagaatggtagatccaccgac
agcttgcactgtgcacctggaaaagctacagacactcaacaccagcccgtgaaagcagctgggagggaggctgtaccctgcaaagccacaggggtggagc
tgcccaagaccatggcagcacacttcttgcatcagcgtgacctgcgtgtgacacatggagtcaaaggagatcatttggagttttAAGATTTGACTGCCCC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGATTCCGTCTCAAAAAAAAAAA
AAAAAAAGATTTGACTGCCCCacaggatttcagacttgcatggggcctgtagcccttttgttttggccaatgtctcccattttggatggctgtatttacc
caatggctgtacccccattgtatctaggaggtaactaacttgcttttgattttataggctcataggtggaagtgatttgctttgtcttggatgagatttt
ggactgtggacttttgagttaatgctgaaatgagttaagaccttggggaactgttgagaaggcatgattggttttgaaatgtgagaacatgatatttgag
agggaccaggctggaatgatatggtttgtctgtgtctccactcaaatctcatcttgaattcccatgttttgtgggagggacttggagggaggtaatttaa
tcatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 51 618 297 NA intergenic
881 chr4 38853656 38853924 RIP_Alu_chr4_038_01 0 + 238899 NA NA SINE Alu Yc1 aaacaagttgctttatttttaacttaggacttcagagggcttattatttcgaaatcaaatctattaaacatcatgagtatattatttctcattaagattc
cttttgaattcatttcacatgttaaagacagggtatcagtgaataatttataagtaaaaattattttataatatttatcttagaaattaaagtgaataga
acatgagaaaaaatgaaaaaaaaggacaagaaacgaatggagtaagactaggcaggggaatttcacaaggttaattgcagcacttctagagcactcttag
cttaccatcaaataattttactagctattttatttagcattagttgtcaatttaactcatttcataggtcaactattattgtgattAAGAACTAATTTTT
TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTAATTTTTaaaaaccaagacaattat
gtccaagttttcttcatttaatcaatatgggactatattaaatgaggctataaaaagatgttactggtgatccataaaccattagaaaaaaataatggtt
tttattattattattttattattattacacaattgcatgtgtataacattttgcctagtaatcaactttttgtttatggcagctctgtgcaaaattcctt
ctaccactaaataatgtaaaagaagacagtggtttttgaacatttttgtttgttggccccaagtagggttcctttgaaacaaaattccccaataaatcca
cctgagtgtggtggtatgtgcctgtagtcccagctgcttggggactgaggcaggaggattgcttgagc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
896 chr4 40852192 40852193 RIP_Alu_chr4_040_01 0 + 238217 NA NA SINE Alu Yb8 aatgataagttaatggatcatgaggcgcattgccacacccatctagacttgggacttggttttctctgtgtataattctgcttttgtacactttagcaat
gaatctgattttgaaacagttactacacaagatccatctagtttcatactctgtgtcttcaattttattaaatcccaaactaaacataaaattacatgtg
ggtaccactgaaacctgtacccaggaaggttcaaaatgatgcatcttttcaacgttttcataaagcaaacatgaaacactaagtgattaacagagagact
atatacagtgtgaccaacaggtatttatttatctgagccatcatgcttactacctggggccactgagggaactgtatctttgaAAAAAAACCCTAACTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTGAAAATACAAAAAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCANAAAAAAA
AAAAAAAAAAAAAAAAAAACCCTAACTAGgcagtagcaagatacaacctttcttttagaatcagggccaaggcactctttaacttttctaaactcctatg
aaaatagtcatttcacagatgcttttcctttttcaaatagcctcttgttttcttaaaggacagactacagaggaggaaaagggcagccacatattgtata
catgattgattgtacaaaaagaagttactaaacagctggagggggcgattcagtagtaaaggaaaatagaaagtagtcagtctctaggttagccattgca
ttttattgtataaatagcattctaacttggaaaggatgcccctgaggtagaaatgagtctatttttctaggctccccaaagtgcagtctacgatccaaag
ataattgcatca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
899 chr4 41286140 41286222 RIP_Alu_chr4_041_02 0 - 13233 NA NA SINE Alu Yb8 gtttacagaaaagagtttagccattgcttacaaatactgtaaattaacagatcttcgtttctcctaggaaatggtacttttggatcacatgtgaaggttt
aaaaaaatacagctgccctggcttcctgaaatctggaaagctttacagcatgaaagaagaatggtttcattggataataatccatctgcaataagagcaa
agtccatactactattaaatgtgtttatccactgattcatctgaatattccttgatttgctttaagtaccataatcaaatgttgttatttaattcaacaa
cgattcaggaaaagcaatttggaatctcacaggtggtctgaattcactgtgttggttacatttgatgcacttcccagagcagAAAGAAAAAAAACATCCA
GATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAACATCCA
atatgatttttttttctctttaccttggagcataagacatgaagcttttatgagggaaatcattccccaaaagtgaaactgttgcttgctagcttatgtt
tccatttaaacaaatctctaactaaacacacatgaaaaatgataggacctttcctttgataaaaatctagcatctaatattggcaggcaaagtttaagtc
acttcctgaattgctaaacaaacagctacacaaaagaatcacacagtacatttgtatgtttccctttcatttacttagcaattcctttcttcatattaaa
aatcttagttttccagcaattattgtttaccctggttaaatgactgatgtataataatgtaattacatgtgatacaatagag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
904 chr4 41928984 41928985 RIP_Alu_chr4_041_01 0 + Ya5ACA1184 TGGCTCTAATGACCAAAAGGA CCCAGGTGATTCATTCCATC SINE Alu Ya5 atccaaggctcttgtttttaaaaaacatgaggccgggccccaagaatatttgaaagggtttcaaatggaaaataaaacaaggggttggcaagtaaccgct
tcttgatgaataaggtttttccaggatttttttttttcgccccacggaactttgtattttccgtgattcacaatgtttggcgtgttctatatcacaaaag
cagtcttggcttaacgacccccatgaacaaacttaggaatgtgatactacttattgtactgtttatagtatgtctatttacctattgatcttactttttt
tcttaagcaactatttctctcattagtatgctatagtgaaaaagtttgcaaatgttttcattggctctaatgaccaaaaggaatAAAAAGAAACAAGATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAACAAGATTttattttgctacaaataatgtggtggtgatttttctttccagaaacgaaatcctgaagttcgacatgtagatttggagatact
gtgagtttgatggaatgaatcacctgggtggggaccttggaaacaagtttgtccgtccactctacaaagtttcctcctctcctacactgaaagactcagt
gccatgcagaagccttttttttaagatgaaggaaatattttatgtaaagagcaactcagcaggacacagaactaaaactactacttacatctaacagaca
cactacaagttgaatcaatttgaaaatcatgtttttatgcttccatagggaacattttggttatttaaattgttcataatgtcccatatttcacctgttc
a Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 467 150 NA intron
904 chr4 41928985 41928986 RIP_Alu_chr4_041_03 0 + pAlu4-41937980 NA NA SINE Alu Ya4 cttatttaataatcatagctctgttttctagcacagggcccggcccaagaatatatggattgttgctaaagtatataaaatgagtggttgtcaatttact
ctttttgattattattgttttgcagtgattttcttttcaccacacaaaaatgtgtatttccagtgcttcgcaatgcttggcatgtactagatccttaatg
cacttttgtattaacaaacacatgaacaaacttaggaatgtgatactacttattgtactgtttatagtatgtctatttacctattgatcttacttttttt
cttatgcaactatttctctcattagtatgctatagtgaaatagtttgcaaatgttttcattggctctaatgaccaaaaggaataaaAAGAAACAAGATTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGAAACAAGATTTtattttgctacaaataatgtggtggtgatttttctttccagaaacgaaatcctgaagttcgacatgtagatttggagatactg
tgagtttgatggaatgaatcacctgggtggggaccttggaaacaagtttgtccgtccactctacaaagtttcctcctctcctacactgaaagactcagtg
ccatgcagaagccttttttttaagatgaaggaaatattttatgtaaagagcaactcagcaggacacagaactaaaactactacttacatctaacagacac
actacaagttgaatcaatttgaaaatcatgtttttatgcttccatagggaacattttggttatttaaattgttcataatgtcccatatttcacctgttca
gtg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
914 chr4 43240915 43240916 RIP_Alu_chr4_043_01 0 + pAlu4-43249909 NA NA SINE Alu Yb7 aagttatatggtcaccatattcatgggaacctacattctctgattcgtacccacatgtccattctcattttttgctaccccttcctctctctctgtgctt
catctacacttgattttattttccttttatttttatgtctgtgacataatccatctattactgagtctctttttccatatattttccttatcatccctcc
tctctttctagttaagcccttttcattctccaaatcttagttctgaagtcagttcctgagtcaaacttttcatgaccctacagacaagatcagaatctgc
tatatgcttatatagtgctcagtagttaccacaatctgcagttatcgtatgtgtgctcctttttggctgatgccttttccttagttGAAATTTAAGCTAC
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTTTAAGCTACctgaaaattagggcatatctttctttttctttaaccttccattttaccccaaggc
ctgacacataataacaagcatttaataattttaaatgcatttttttcttatgcagaaaaaggtttgaaccataaataaccatagtaagtgtgacactcag
ataacctgtgaagagatagctttaatctcaatcaaaggatttgtttatctctttcatctcctggaatatatgactcaaaggtcacccttgaatgatggtg
gaaagtgtcggctctgtctagacagggattgttctgcatgtcttctcacaaacgaagacaattaaggatgggtaagaatgatttattccaatctttctta
actatgtgggctgatgaaattgtacgtgttt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
923 chr4 44350322 44350623 RIP_Alu_chr4_044_01 0 + Yg6AH44|9369 GAAAATTCTGGGATGATTGA TGAAAACTACCAAGGGTGAG SINE Alu Yg6 acccacaggataggagtcaggggaggaaggtattgttgttccttaaaaggtgtctatatattactcaaattgtgcagcactgttctagtttgaagcagaa
tatggtctcagtgtgttttagccttgcatgaccttttgtttttaaaatgactctttttcttttcgtctttgctatttaccttggaataccttcctacaat
attttacttttgtggctctcatgatacagacatggacttttctctctctggtatataccatctataaatcctaggattttttactcatagaggctgggca
ttaagagtacacaccagatttaatagatagtgaaaattctgggatgattgatgatattcagaaccagaagaacttggatgtgtAGAAAAAACATCAATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAGAAAAAACATCAATATcaggaaagcagggaagccccagtgaagacctcacacttaatttttttattcctgctcctcacccttggtagttttcatggca
ccttcaggtgatgaaaatgaagaaagacagataaaatatttaatcatcaaagtttataaaacttgtgtgaaagtttgctttactgattcaggcttaagac
aggatattatctacttcaattagtttggaatacccatgagggcagtaaccacatataccttgtttacagttgattccaacactaagaacaatgaccagaa
caattgctcagtaaagactgtatttatttacctcattatttctagtatattcagcgtatgagggtaagaggtggaagatcaagatatcggtatctgtaaa
g UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 55 464 146 NA intergenic
926 chr4 44711650 44711827 RIP_Alu_chr4_044_02 0 - pAlu4-44720539 NA NA SINE Alu Yb7 acagaaccttagccctctgaaagcacccagaaatgaagccaatcaactatgtacaacatatatcataggcaaatcctcagagaaaaaagaatataaaaac
aaaaagacccattcaaatgacaacaacttcaaaaagataaactctagccctctcagaatagaaagaatcagcacaagaactctagcaattcaaaaaatcg
gagtgtttttcttacctccaaaggattgcactagctccccagccatggatcccaaccagattaaaatgtctgaaataacagatgtaaaattcagaatctg
gatagcaaggaaattcaacaagattaaagagaaaactgaaaaccaatccaaggaatccagtgcaatgatccaagagttgaaagaaacaaactgaaccaaA
TTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGA
GATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAaagaataaagaaaactctatca
tgcaaacaaaaaccaagaagcagcagaggtcattattcttatattagataaaacggactttaaaccaacaacagtaaaaaaagaaaaatacaaagaagga
caatacatcatgataaagggatcaactgaacagtaagtgttaactgtcttaaatatatgcacacccagcactgaagaacctggattcataaaacaactac
ttctagacctacagaaagagttggctacagaataagagtgggggatatcaacacttcactgacaatgttagacaaatcattaagacagagaaataacaaa
gaaattattgacttaaattcaacaattgaccaattggacctaatagacatgcacagatcttcattcaacaaccacag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
939 chr4 46509072 46509073 RIP_Alu_chr4_046_01 0 - pAlu4-58017031 NA NA SINE Alu Y atctctcagcatttgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattctttact
ttaagaaagttgaatattggcccccactctcttctggcttgtagagtttctgccaagagatcagctgtcagtctgatggggagctcctgaaggaagcact
aaacatggaaaggaacaaccggtaccagccactgcaaaaacatgccaaattgtaaagaacatcaaggttaggaagaaactgcatcaactaacgagcaaaa
taaccagctaacatcataatgacaggatcaaattcacacataacaatattaacgttaaatgtaaatgggctaaatgctccaattaaAAGACACTGACTGG
GTCAGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACAGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCATG
AACCTGGGACGTGGAGCTTGCAGTGAGCTGAGATTGGGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAGAC
ACTGACTGGcaaattggatagtgagtcaagaaccatcagtgtgttgtattcaggatacccatctcacatgcagagacacacataggctcaaaacaaaggg
atggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgatagaacagactttaaaccaacaaagatcaaaaga
gacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactattctaaatatatatgcacccaatacaggagcacccagattca
taaagcaagtccttatgagacatgacagcatgctggcagccctcgctcactcttggtgcctccttggcctcggcgcccactctggccatgcttga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
989 chr4 53063369 53063370 RIP_Alu_chr4_053_01 0 + 17800 NA NA SINE Alu Ya5 gtagaccaatgtgttgatgactcacctcaggtttgtgtattgcattgttttaaaatatttctctttgtgcctcaaatttagaagggaactcaagacagca
gtgaggaaacaagaaataggagaaaatatttgtttgcatttggcaaaagagaagccgaaaaagagcctgggctgttgcactttacaactttgctcccttc
ctccacccctcgaattggggttcatttataacagggaagcagcttgacaagaagcaaatatgacttatctgtaatattttatttattttaaaaaagaaag
aaagactagaaccaaatctgactaaacttaaaacttactaattttgcatggtagaaagatgaatgtttgtcatgtgggtctttattAAAATGTATCTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAAAAAAAA
AAAATGTATCTTTAaaaaaggttctaaaggaaaaagaagaacagaagattcaaaacatttgatcagaacatttggtaccagcccttgcattaccatgtca
gtctatgtgtccctgagcaagttattgaagttctctaagccttgtgatcataagacctgtcttttaggatgtggttaatattaaatcagaatatgtatgc
agaacacccagcattggacctagattcatatgttcttaattcatggtggccactatggctactttctgatttcccaaaatgtgtctgctacagttttaaa
tgtatattctctccgaaattcctgttgtaacttaatccccactgtggtggtgtattagtctgtccttatactgctaataaagacatacccaagattgggt
Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1007 chr4 55323364 55323668 RIP_Alu_chr4_055_02 0 + pAlu4-55332259 NA NA SINE Alu Ya8 ttacctaatgttagagctctaataataagttaaagaactgggatttaaaccagttaaatataataatgataataacagtaaacaattcgatcctcagaag
tctttgtgtgagctctgagctctgatttccattattaacgccagcctgtctttcgagggttgtgaagattaaatgagatagtgcctgtaagaacttaaca
ctgacttgcccaatcaacaagattaatagttgttattaataatagtaactggatccagtattcagaaggctctactgggaggaagtatagggacaaatag
caatggagaagtgactgggaggaagaaagaggtaaccggtatagacttccctttggaaaatttcaggtttgaagtttgtttttAAGAAAGCTTATTTACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGAAAGCTTATTTACCatgactgctatggactgaattgtgtctcccttccctcccccaaatcaacaaattcatagcctgaagccctcatcctcaa
tgtgatgatattagaaggcagggcttttgggaggtgatgaggatggagcctttgggattgaattagtgccctaataaaaacagactcaggagagctctct
ctctctccctgccatgtgaggatataatgagaaggcaattatctgcaagctgggatgtgggccctcaccagacaccaaatctgttcgcaccttgacattg
gacttcccagcctccagaactgtgagaaataaatgtctgttgtttaagccactcattctatggtattttgttgtagcagctcaagctaagacagtggctg
caag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1011 chr4 55839489 55839817 RIP_Alu_chr4_055_01 0 - Yb8AC1257 GGGTCTGTTTTGGGTGCTTAATA GGGATTTTCCCTGGATTATCTT SINE Alu Yb8 tgaagagaagatctgtggtttgggggttgggtggaaggtaaatattcaatgcggctgggattctgcaggtggggagggcaagatctaattacctgctttg
cattcttccttggtcagccatctcagagtgcctcttctaagtcacttagcttttcatgcatctaggaaaatggaagctattgttatggagaggcagagga
agtcagtggcatcaattcacttagcctcatgccttgaatgagattagtcctcaaaaaaacaaaaaaccaaaaacaaaaagctatttgtatgtgctaggag
gggtctgttttgggtgcttaatactgctctgcttttaagtcctgattccaccacttacagttatgggacattggaaaagttacttaaactttctAAACCT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACTTTCTAAACCTcattttcccatctcccttaaatgggaataattatagtatcttttctattgagttattatgtgcatt
aaataagataatccaaggaaaatacctgacacatagtaactgctccaaaaatctaccccttctttttattgttattgaaaaaagcaaagaatgccctgtt
ttttttttttaccatattcctaattattgatgaaaaaacttcattgattatttacaaagagatataacaactttttttttgggcaagacttttaggaagg
caaagggacatttacttaaattaagaataaatattttttctctttacttcttttctttctaaggaatactaatagtgcttgccacctcatgggatgttat
gaggatgaaatgagaaataaagtactca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 525 202 NA intergenic
1013 chr4 56212889 56212890 RIP_Alu_chr4_056_01 0 + pAlu4-56221885 NA NA SINE Alu Ye5 ggctcacacctgtaatcccagcgctttgggaggcggaggcaggcagatcgttagagctcaggagttcaagaccagcctgggcaacatggcaaaacccctt
atctactaaaaatacaaaaattagctgggtgttgtggcacgtgcctatggtctcagctacttgggaagctgaggcaggaggatcaactaagccctggaag
tccaggctgcaatgagctgtgactgcaccactgcactccaggctgggtgacagaacaagaccttgtctcaaaataaaaaataaaaaataaaattaactgg
atgtaatttccagttttatacatagctgctaaacatgtttcttaaactttatacttggaaatcattcaaacatgcagaaaagttAAGAATAGTTCAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGGCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATAGTTCAAAGAGgcttctacatatcctttatcctgatttgaccaactgtcaacaacaatcctgttgaccaactgtcaacattttgcat
tattgtccatatcatacataaacatattttttgaaccatttgaaagtaaaatgcacatatcatacctttttacctctaaatacttcaactatacctccta
acaacaaggatattctcttaaatatctacagtatagttaccaacttcaggaaacttaacagttatacagtatcttaatgtaatgcctattttctctcttt
ttttgttttagttgagcaaaaactgccctccaagactttttccctcttccaatactgaatccaatccagggtcatgtactgcatttagctgtcatgtcta
cccagact Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1026 chr4 57932440 57932708 RIP_Alu_chr4_057_02 0 + Yb8NBC96 GAACCCAAATAGCCAAAGCA TGTCCTTCCCCCAGTTTATG SINE Alu Yb8 aagatgtgctttgttaaacagatgcttgaaggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggacacaaacactgcggaa
ggccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatctgctgacattccctccactattgtcctgtgaccctgccaaatctcc
ctctgcgagaaacacccaagaatgatcaataaaaaaataaattaaaaaaaaatctttaatccatcttgagttcatttttttatatggtgagtgataggga
tccagtttcattcttctagatgtggcttgccaattttttagcactgattattgagtagggtgtccttcccccagtttatgtttgtgtatgctttGTCAAA
GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGC
CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGGTCAAAtggttgtaagtatttggctttatctt
ggggttcttttttctgtatcactggtctatgtatacacttttataccagtaccttactgttttggttactattgccttgtagtataatttgaagtcaggc
aatgcgatggctccagatttatttttcaagcttaggattgctttggctatttgggttcttttttggtttcatattaattttaggatgttttttctaagtc
tgtgaaaaatgatattggcattttaataggaactacactgaatctacagattgttttgggcagtgtggtaattttcacaatattgattcttccaatctat
cagcaatgagatgtatttccatttgttcgtatcaactatgatttctttcagcagtgttttgtagttct UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 498 224 NA intergenic
1027 chr4 57988958 57989270 RIP_Alu_chr4_057_01 0 + 238724|Yb8NBC71 GTGCTGAGCGCAATCTTGA GGACCAAGGGGTGCATTTA SINE Alu Yb8 gatttgaaaatgcattttgggttagcaaccccatttccccctgatggggggataagggacgtgaataccacttttgcactcactggctgatcgtgtgtgt
atgtgtgcacctacatgtgtggtggagggatgggagggatgggagaaggccatgcaggaggaacgtgagaaataagaaggaacataaatattctcccagt
cctttggaaaatgcttttgtttctgatttttacccttggtgcccaatccaagcaggagtgaggaaagagaaatgggcactgagtgggagaatgatgaaaa
agatggaggaccaaggggtgcatttactctttgtctttatcactagcatctaatatttgcctctgaaggctaaatttcaattctttAAAAAATATTCAAC
CTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG
CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATATTCAACttaattttaacttttatcttagaggactcagctgtacgccacatatttaatctaatcaagattgcgctcagcac
tgctttcagtccttgctgagagctctattgagtcatttattaactcgatgacttaaatggaattcacaggccagacacaaatctaagagagaggaggagg
ctaggctcaggaaggaaaggggaagagagttggcttatttcaccttggtaatagaaggccctggacaatataacaatggtctcgagacccaggaatgttt
gttatgaaaaggatggagaccactgtttgccatcagtatagagtggacaaatagttcattgttttattttgttgaattttaacagtcccttagaggctgc
tcctgatcaagg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Trace comparison|Candidate screening NA 61 493 167 NA intergenic
1038 chr4 59448533 59448837 RIP_Alu_chr4_059_01 0 + Ya5ACA1161 AGTGGGAATCACTATGATGG GTCTTGACCTCGTGATCTGT SINE Alu Ya5 tgtattaataaatgacacattagtaatgtgtcatttattaatacatgtgtcatttattaatacatgtgtcatttattaataaatagttttccagggtcat
gagtttagggacaaagtctgttttcagtcattattgttagttgttttctgagttcatctctattaataccttggaaaacacagccaataacaatgaacat
acagtattaatactctgtatttctacctatagcctcagggttttaagattactagacattatctgagtttcaaatggtcaaaaacaagatttgccagaag
ttttactatcataaagtgggaatcactatgatggcctgggttcaagttttcacagcagaaacttatgtaattgtaagtcctcttAAAAAAGACAACACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCAGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGACAACACTGctgggcgcggtggctcacgcttgtaatctcagcactttgggaggccaaggcggacagatcacgaggtcaagacatcaagg
gcctccttgtcaacgtggggaaactccgtctctactaaaaatacaaaaattacctgggtgtggcagcatgcgcctgtagttccagctactcgagaggctg
aggcaggggaatcgcttgaagccaggaggctgaggttgcagtgagccgagatcacaccattgcaatccagcccggcgacagagtgagaatcggtctaaaa
aaaaaaaaaaaagacaatactaaattataaatataaaattaggtacaaaatcaagtacttgtttataatgagaaaataaataaattacaaaataattaca
aaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 479 159 NA intergenic
1053 chr4 61398007 61398324 RIP_Alu_chr4_061_01 0 - pAlu4-61506906 NA NA SINE Alu Ya5 tactatgggatttagaaatattgtttttcactataagatctttaggttaaactgttttttgtttgtttgtttgtttgttttttgaaatggagtctcactc
tgtcaaccaggctggagtgccgtgttgctatctcagctcactgcaaactccccatcctgggttcaagtgattctcctgcctcagcctcccgagtaactgg
gattacaggagcctgccaccacgtctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctca
ggtgatccacctccctctgcctcccaaagtgctgggattgcaggcgtgagccaccgctcccaatctaggtcaaactgattttttaaaAATGTGTGCTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATGTGTGCTGTAttactttaatgaaaagtaaaactttattttaagtgatcaatatttttaatgaattcctaaatattataat
ctcataatttcactaaaaaattacttggaagcatatacgtttggtggaaaaaatcagtgaccaaaatatcaatagagaaaatattgaatactagagaaaa
actagagactgggtataatagactttcattaattcgaaagaatttgcacattgtagtgcctgaatgtaattcgttatttatacaaagagtgattagtacc
agtgatcaagactgagaaaactgaaatgactgatggaaatattaatatttggaacatcattctgcttaatatacttttgcaatacttaaaggaattggaa
agggtgaagaatgtgag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1092 chr4 66584156 66584421 RIP_Alu_chr4_066_01 0 + Ya5ACA1168 TGCCTTATACGGTTGTTAACCC TTCCTTTGCTTTCTGTTACCTG SINE Alu Ya5 ataataatcaaagaatttgagcaattattcaataatcaatgaatatcactatttagtgttaagcacccttccaagtacttggtaaaacagataaataaga
cagttttttacaaaagaaggtaactgtctaatgaagaacacacatacacacttaaacaatatattacattactttgtaaacattttctacaatagaagaa
gtcattagtgctataaaaatacaaatatgatctgtatgatgcggcctggtgactctggaagattttattctcaccttcttcaaaaaatattgaggaccta
tttacatgccttatacggttgttaacccttaggatacaaagataaagcagatctcctgcacttaatatttcatggtctaaaagtcAAGAAAAACAAACAA
TTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAACTTGCAGTGAGCCGAGATCCC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAAAAGAAAAACAAACAAatatatagaaaaagtaatga
atgttatagtggaaagttacgtaacaaatttatgggataaacatgaatattaaagaggaagtttccaaaataaaatatcaggtaacagaaagcaaaggaa
cacatatggaaaaaaacaaatttcaggagaatacaatgtacagaggagtgtttccagcagagcgtgcctataggaattagccaaggagaaaactagagat
atgggcaaggccaggtcaggagggccaatgaaactatgattgagaattttggatcttttttttagctcattctttatgtttttgcttctaaattttcttt
cacataagaagcaaacattctgatattttgggttacaattatacctttgaggaaagttttctaag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 493 214 NA intergenic
1095 chr4 66935382 66935383 RIP_Alu_chr4_066_02 0 + pAlu4-67044377 NA NA SINE Alu Ya4b tttttgcactagctgaaactttctgcctgaaaccctcttcacccatattatttcatgacttatcccttctagactctgagttattggtgaaaatgtcatg
tcctccaaaggactacttgctgcctaatagttcctaatttctttattagtctattcatttattttgtggcttcctccacaagaatataagctccacaaga
gcaggggattttgtcttattcgtatcattctatcttcaaagagggtaagagtacttgacacattattggcactcagtaagcaattattgaatatgcaaca
tgcaatgataggagtgccccaattagtatagaaaatcatagatacgtctttgtaggaaaagacacttgcagaatttcaagttAGAAAGATTAAGATTTGC
GGCCGGGCGCCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAGAAAGATTAAGATTTGCtcaggtgtcctttatgtgtgggctgaaaaaaaaaaagttattatcctgaaaagaataacacggtatgagggagttcacctt
acatggataaagaaggctgtgttgatgacctcaaaggaaaaggcaacacaagaaactaaatgtttataaggtaatgtcacttcttagtaaagcttgtgtt
taagactggaagacggaagacactctttacgtggtgttccagcaatcttgcttgataaaaatgtcttggtataagatcatgaagaaaaagtaagtgtaat
tattaggatgaaggggagagaactttgctttctaaccagggacctcagccagctggagaacacttgctacacttgactagcaatcactgaactgtgtata
a Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1109 chr4 68773545 68773546 RIP_Alu_chr4_068_02 0 + Yb8AC1254 CAAACCATAGTCCCCCAATG AGAATCAGTCCAATGCCTGC SINE Alu Yb8 tgttttatctgcaaattgtgttgccaagtgaaagtagaaatctgtggttatctgcagaaaggtgggacccaggaggccccagtagtgacctcacatattt
gggtcattcctcaggtttggatcagttctgagtcatgacacttacaatttcactaagcttctctgagcccattttatttccatcactcagggaacaggga
gaaaaggtgatttttgtatctctagcacatctgattaatgtcctttgaaattctgaactgtgtacatatgacactttggggaaggattaggagtcttatt
atattagagtataagaaaatatcaagattcaattcaaactaaaatgtgatattaacaaaccatagtcccccaatgcatcaacctctatttAAAAAATGGC
NNNNNNNNNNAAAAAATGGCatattctggtatagtacaatactggtgtgacctttactaaaagcttacaagtattaattccatactgcatggcaggcatt
ggactgattcttttgtttaaaactcacactaccttaggaggaaaagtatcattctcatcagctccatttgatagatgaagaaactgagactcaggatata
taatcttgtctaaggtggcacaggaagtggtggctctgtaatatgaacccagggaagccatctttagatcttgtgttaagcgcattaagtgactttgaca
accttgaattaattacatatttgaagcagatgttaaagttggtgggagacaggcaggtaggaaggtcatggtgaaagaaacccttaaagaagccctcaaa
ggcatctttt Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 467 136 NA intron
1110 chr4 68865673 68865980 RIP_Alu_chr4_068_01 0 - 16457 NA NA SINE Alu Y aatgtgtctatgtctcttttttctatgccatttttataaaattatgagacaagcagcctactcaacacagtagaagcttaatatgctgaatcaagtggca
cactgatagtacaagcgggggatctttatacttgcatgcttgttcatttgtgctatgcactgcttacatccacttcctcatgagaactgcactggaagag
ctcaggtttatatttaaaaaatttttaaagatttatacaaactttaaggttttgcccagaaaaaatattgtcttttaataatattttccaggttaaggtt
tgttaaggaataataaaatacatgaatgagtgaaatccttcttagtaaatgctaatgaaaagaacttttcaaaaattttattgtttAAATACTTTTTCTG
GGCCGGGCGCGGTGGCTCGTGCCTGTAATCCTAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATACTTTTTCTGgattccaaaaataagattttcagattatctcttgtataaaagtaaatttgaaggaatagaaaaaccccatacctctaaa
agtagctttttcttcttggttctgtcatattttctttgactaaatattagctctggactaataaaatacttttctggtacatcttccctgaagggctcct
aagggttttataccacagaggaaaattctaactgaaatactgacatggggattaattacaaagagacattagtgcttgtatgtaatatagtctggtaaac
aattcaaaaatactactaggtcataaaaattccacttaattttttttgcaagtatattatgtttatgaacacctccaggctgcttataactcacccacct
cttttta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1118 chr4 69971633 69971926 RIP_Alu_chr4_069_01 0 + pAlu4-70040703 NA NA SINE Alu Yc1 tttgttccatcacaaaagagtaacagcacagcaggcactactgaaaaaattggtacaaattactaaagagagaaaatcaagtattaacaggaattattgg
agtaaattatgtcttttaactgactcagtcactcagtttcttatcaagacaatgtataatatgaagatagctggcctctactaagggtattcatgtaaat
atgtgtatgcatgcagcacacgatggttttgaatacggcccaacacaaacttgtaaactttcttaaaacgttgtgatttctcttgctatttttttctcag
ctcaccagctatggctagtgttagtgtattttaagtgtagcccaaggcaattcttcttttcccactgtggtccagggaaggcAAAAGATTGGACACTCTT
GGCCGGGCGCTGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAT
TGgacactcttgttctataggtatattttgtgcttaccatgaggattgtataaaaaattttataataaacattgtgtaataaaaatattttaaaaaataa
atacataaataaaatagaaataaaataaaaatatagaattaaattattttacataattaatgaaaaataattataaattataaaaaataaagcataaata
aataataaataacattaaaatattttaaaataacagtccattttaaaccaaaaaaacctttaattatatatgaaaactgtatttctttacatctcccatt
tctactttatgttagtaatatcactagttatatattttatcttctgtcccaattaatataaatgtaatgttacttttatgcttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1123 chr4 70594434 70594435 RIP_Alu_chr4_070_01 0 + 5298 NA NA SINE Alu Yb8 cagcagatgccaaaactgctggtatcttgatctaggactttttagcttccagaattgtgtgaaaataaatttctcttctctatagattgatgaatctctg
ttatttttttgtaacagcaaaagtaggttgagacaatatgtgaatctccaaaagagaatatttgaaataaaataagaatgtgagggtaatagatactaga
tccaaaatccgattaggaaacaaaatgataaaagatataggtgagatgttaaattaatttgaaataacacttgaaagaattgataaataaattagaaaca
gaaatcaaggcttatggcattaaagtgaatttactaattgaaattatttaaggcaatctcaatgagctaagaatagtaaaaattaattaaaacaAATTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAATTAGataatacagaatgaggatagtcaaaatattttaacatagggacaactgaaatctgatgtcccaaaagcagagaaaaaatg
gaactgaaaattatcctaataatcaaacaaaaattaatttctagcataaaaaatgaatatattaaatcttggattagctgtgttataaagacacactatt
agcctggaaaatgtataaaatatataaaaatatattaaaattaagcttctgagtttaaaatgtaatgatttttttctagtcaaaatggaaactttaaaaa
aaaaatatttgacagatcttaaaaactctttagtagcatttaaagctggaagactgaatattatttacgcagttccgaagggaagaacgtgagagctaag
tatatgatattaag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1143 chr4 73194678 73194991 RIP_Alu_chr4_073_01 0 - pAlu4-73230177|238850 NA NA SINE Alu Yb8 aagcaaaatataaacaatacaagaaaatcaaactcacagtcagtcccatgtataatcataaacaatcatctaaaaaaaattagaaaacttttacaaggaa
tataaatttaggttaacatacaaaagtaagaaaagccatgttaaaggtgagttaaaagtgcaaacagtattcagtaaaattcagtacttttttattttaa
aaactttgcaaatttacacaagaagaaaactttcttataatgtctaagggtatctaccaaaaatgaaaacacatattacatatagtcaatagtaaaagtt
aaaaatacattgtttaaaatcagtcacaacacagagattcagtttttatctctactattgtacagaggttctaatcaatgtaatAAGATTACAAAAATAA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAGTTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAGATTACAAAAATAAgttacgatgaacaaaaatcacaatgacgtaagaaaaatataatttgtagattctataaagaaaatcaaata
ataacttctatggagaaagtattagaattaatagagtttagcaatgttattgtgtataaaattaattacaatagagagttactataatccaaactgttta
ctctaaaatctaagtgtactttgaaacgtaattcagaaaagattgcatttataataacaaaagttagttccgatcctttataagttgtactacatgatat
aaaaggtaaataaaagttattcagttcatttaataaggctaggaaactgttgatattgagctcacatcagaacaattcacacacaaaaaggatcatttca
cacacatatatag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1191 chr4 79516694 79516695 RIP_Alu_chr4_079_01 0 + pAlu4-79552295 NA NA SINE Alu Ya5 caacttaaccatgatcatgcaattaataaactgctgcccagagattttacctgaagtctgactgatgccaaagctactgacattaacttcaacatgcatg
aaccatcgaatggattgaaagtcagaactgacttattgaaaaagattttctaaaaatatcatttgggtctgccactgattgtattattgtgctactattg
ggctccctaggaacataagcaagtctttgactcaataaatctccttgtatttgaccaagtctatgattggtatttcctcccttcccttctgttaaaaatt
ttcagttttcttctgactacacatctattctgttagaataatactttttctagttgctgactcttttctttttaaagtgaatctatttttTAAAAAAGCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAT
AAAAAAGCTtaagctttaaatttgaacttctgaaactcccaggacaagaccaattattgtattcataaagcattctgtcaatttaaaaagtttatttttc
tagtttttggcttcctccaataattaatcttgagtctttatgccatctaatgctaataaggttctgtttgtaccagacactgaagtgaaggtatgccttt
aagagtattccttcatttctgcatgagtgtattcctgagaagctgggagtactttaagtattggcaaatttgataagatttttattgtatattatggagc
tttatgtttatagggtaaatattcctaaaaaaatcattatttggcttgctaagcaagtcatgtcagaatctgagctggtggcaaaaacgccatgaaaaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1199 chr4 80562921 80563235 RIP_Alu_chr4_080_01 0 + 238695 NA NA SINE Alu Yb8 aattactaatcatattaatttgaaaggctctacagaggttgtgaccctaagtaacaatcccatgtccctctcagggctatagtgtcccaccaaagtcaat
gcttaaccatggctctggagtaatggaaggcaatatgaatcagtataaaggagtctcatcaacaaaatgcttttctatttacttcttaaatcgaatcttg
actgtcatagggtatcttcctctgaggtagagcataaattttgatatccatgtctatcaatcaagtttgattcaagagtatcaggttgattatttttaaa
aaatctaccattagtcatcataggtaacagcctctagcataacagattctagttattgttgtttcttgaagaatgattgatgtcttAAAGAATGATTGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAATGATTGAGgtctttaagaatgtgcatactcagtattaaagtattggttaggaggtaggtgactaatttagcacatttttt
gaaagagtgttggtagattctttagtggggtgcatttaaaatcaatcagatattacactgtagcttttgcagcattggacagaaccagtagatggtggtc
ttaagttgcaagttgcttttacgctaacacctgtcagcatgtgaaacaactactgctttcaacaaaatgttgaaattcacctttctatttatcagatgcc
ataaattggatgaaggtggcacatgagagcattttgaagtgacatgttaactgttgtttatttttcaaaagcactgatctgaaagaacacacagactatt
catcacagcacttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1208 chr4 81659715 81660044 RIP_Alu_chr4_081_01 0 - pAlu4-81695227 NA NA SINE Alu Yb7 ttgcctatggctagcttatttttctcttttaaatctggcatacattttgaacactaacctcaacctcagcttcactccatttcttcaaccttttctttct
ctccatcttttaaaatctttttgtcataagatatacacatttcccttgttaattgcctcaaattcttttgtaggaatgcagactatagatagctgataga
tagaaggaagatagtagaaggaaaaaggaacaggaggaaggaaatgttttgaaactatttcccagaagcataatcgggcagcagatcataatgaactatg
aaggatgttgagactgaacaaccaggtaaggcattgcaacaaaccaagtcaactggtttgactggattagcgatttacaagaattttaaaAATGTATATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTATATGttaagagtaattataaataaaagaatcagcaagagtccatttttcattaccaattagaatt
ttcatcaaggagattttgaagacactctaaaatataaaatctatagggccaaaaatatggtattatcataataaaaatggcattttggcatgggaaatag
aattcagtgaaagaaaaataatgagctatttttaaaggcattttgttattggtttgacaaaaagtaacaataagaagtagatatggagctaaaagcccag
aagaacagacatgcttgaacatctgaccaaagttaatagaagacataaaagtgtgtgacatattgaagtagtggaatataaaagaggtgtaaatgagaga
aatgtcatttgggagagatccaaattagt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1209 chr4 81813677 81813856 RIP_Alu_chr4_081_02 0 + pAlu4-81849177 NA NA SINE Alu Ya5a2 aagaatcttcaagcttctaaattctatagagtgtttacttgatttctgaataataaaagtaataaagattaaaagagaactgtcatttcacccttgtatg
acagagaggagagactcggagtttagcaatttgtgtgtgtgtgcctattccattaagaagaatcatcttcaatctgggtaggacaaagcacccatcataa
aaatataataaaataagtgggaaactagttcccgcttctcagacctagcaacttacctgataggaagttacacagaatgatcattttgttttcagagttc
tttagaatgggaaaaataccatgatacctgaaaggggacccttccctcattttcccaatgggaaaaatatttaatttcacactAGAACTGAAGAGCTTCA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG
AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTGAAGAGCTTCAtatc
actctctagccatgtttctggatggataaataaacagctgattggtgaacgtttagtggagagaagacattaacattaaaagagaacctagattctcagg
tacagaaatctcaaaaaactctcttcctgtttttgataaatttactagcttggcagtcacccatttgctttgtgctttaactgggtatgactgaaccttg
ctcatgccttaggcaattaagtaaaaatagcttttgggtttgttaagatcagtatgtgtcaatagcatggtgtaattatttagaagtgtaaagcacaaat
tatccttgtatcctcagttggccacctctagagtatagtgctagaatgtgaaaactatattttgtagaaaatacactct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1213 chr4 82348709 82349015 RIP_Alu_chr4_082_01 0 + 3330 NA NA SINE Alu Yc1 gcttgcttattgcatcctagctactgcgtggagccagtgacccctcccaggttaaccagaatgtgaccttgctactgtgcagaaatagtttttaggcagc
cctctcttccagtgattccagagaaggttgaagaccatagagttttgtctttctctttactgtgaactaattatccattagtgaggctcttcagtggaat
tttgaagttacatttagatgttcacataatctctctctctttctctctcctcctctttattgttctctaagagaaaataatctgcacatccctgttctca
gcgtcatttattcctgcccaaaaagaattctgaacgattgcatttgtctggtgacggctgttgctacactgaaataggaaacatcAAGAAATAGCTTTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAATAGCTTTACtctttaatctaatataaagtattaaatgccaaatggttctagaatggagttccttttgatcttatgttcgattaaaact
ttttcaggaaatagattcagaggtaccttttgtcacattatttgttgttcagtcacagaggacataggaaatttagcatttgtcatctttttctatgctt
tgaatacttcttgaatttacacagcttgtaacaaacccatcaaaccctttgaatctagaaatatttgactgaggacaggaatgtttagaacactctttct
gcttaaaagcaatacagataaaggagaaagagacagagagagagagagagattccatcaatatctaagcacagcttcaaaattccactgaagagcttcac
aaacag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1218 chr4 82987327 82987328 RIP_Alu_chr4_082_02 0 + pAlu4-83022928 NA NA SINE Alu Ya5 tttattgcagcacaattcataattcataattgcaaagacaagtaaccaacctaagtgcctgcccatcaaccaatgagtggataaagaaaatgtggtatat
atagatgtggaatactactctgccataaaaaagaataaaataatatattttgcagaaacttgcatggagttggaggccattattctaagtgaagcaactc
aggaatggaaaaccaaacaccgcatgttctcacttgtaagtgggaactgaactatgggtatgcaaaggcatacagaatggtataatggactttggagact
cagaaggggggaaggtgggaaatggtagtagagaaaaaactacatattgggtacaatgtatactacttgtctgaccagtacactaaaatATCAGACTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCTGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATCAGACTTCActactatacaattcatccatgtaaccaaaaaccacttatccccaagagctattgaacttgaaaaaaaaattatctgttttt
tcattctccagctgaatggataagacactaagaatataaaagagggtagaactgtaagatggaaggaagttgggtctctgaatggaacatctcctcatcc
ctcccatctgaacaagaaaattaatttttattgtatcaagctactgaaatgcaggtttttttcatacagtagttagcctgcctggctagtgagtattatt
attaccattcaaaagcagaagttttaagaatgtaaggaatggaatttaaattataaatatatgtttaagtttcattctagtgaaaataagatacttgaaa
atgccaat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1223 chr4 83697871 83697872 RIP_Alu_chr4_083_01 0 + pAlu4-83733473 NA NA SINE Alu Ya5 attaatagaaatgttattacataatgagagcaatatatttgacaaataaagccattcaaaacacattgtctatggagagaagaaatttaaagggtttcct
ggtgatgaaatattgaaattattctataataccacttaacccccactgctcccaccctcctgtcattcctctgcttgcagggtctatgaaaaacatatat
gccccagatgtttcatggttcaagggcaatctaaatagtgagtcaatttcataggccatgtctttcatgggaagagtagttgctccagattatccaggct
caaattccattaaaggaacaagaatggatcaattgtaatataatcctactttgctacaatagagctcaacactcagaaaccaagtgtattAAAGATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGATTACTGgaccagtcttaatgcttaaagtcaagtatgcctgataggagttttatagtttaatagactgcagaatgta
atcagcattggtgcattcaattagctgacttcctcattttaaaatcaggggattaaagctaaagctgggcatggtgacacatgctggtaatcccagcact
ttgggaggcctaaacggtaggatcactggagcccaggagttcgagaccagcctgggcaacatagtgagtccctgtctctaagatgataaaccaaaaaaaa
aaaaaaaaaaaaaaaaaaaggttaacttgggcgatatggcaagacctcatttctactaaaaatcaaaaaaaaaaaaaaattagctaggtatgatggcaca
tgcctgtggccccagctaca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1230 chr4 84578898 84579172 RIP_Alu_chr4_084_01 0 + 290 NA NA SINE Alu Ya5a2 taattggtttttgaaaccaaagtgtatgagaatctacttaagaagtatactctagctattctttttcttactctaaccaataaaaattaatgctgtaaaa
gaatcacactgatctcacatggtatgatattttataccaacccacatacctttgatagcaattatataaaggtatattttgctttagtgaatgtgttacc
aagaattatgtctttttagagtaaataatttaaatgcgttgagtggatcttgatatgtcaagttattttgaaatgcaaacttattctctaagataactgc
tagtttgtgttcacatccttttgctttagactcttagggtgagttatactcatattagtaagtattcatacataaatttcctgaatattAAGAATTATTA
CACTTTGGGAGGACGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCCATCCGGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTATTAgaacttgatatagtt
gactttgtcttttgctccctgtccaaactctctattctgataaacaccaataaatttattgaaagtttggaatgaacaaggaaaattacttacttggaaa
gtaatccatgaggtcccaaaggtcttagaaggtatttatccacttgcttgttagaaaaaggatagggtaaccgcaagtacttggtgacattatggaggtt
tatggcatacagagttaaatctccttctttataccttggactaaaagcaaagaggttaacttaatagaaatatgtatctaatttaagcaattaaaaactc
aattacaaatgtgatcctaagtattagtatccataatgacaatccataatgcatcctaagtattaggatccata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1248 chr4 87017948 87018257 RIP_Alu_chr4_087_01 0 - pAlu4-87053447|238106 NA NA SINE Alu Yc1 gcctgaacccaggagtgggaggttgcagtgagccgagatcaccgcactccagcactgcagcctggacgacagaggaacactccgtctaaaaaaaaaaaaa
accccaacaacaacaacaaaaagaatatcccagatcggaggtaggtactttcaatagaagttctcctctgagaagaaagcatttaaatagagatttgaat
gataagaaatagccaaacaaacaaacaaaacaaaacccaaaggcatgtactctgtaaggaggggatccagcatgtgtgaaaggccatcgatctgaaaaat
ctgtggacattcgtgaactatgtggcaagtctgtgtggctggagcatgggagcaaggggcgataggggatgggatcctgtaggctatAAGATTGAACGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGATTGAACGTGgagttttcacgatatggagagtgtaatgggaagctgttgaaggctttacacagccagttagcacaatttaaaatgatc
tttctggaatttggaagaaaatggattctagaaggattaagtgcagaaatctaacagaaagatgatttggtatacatgagaagaaacaggagacagagag
aagaaaaccgagcagagatatattttggaagcagaatcagcaccactggttgatgattggatgtcaagtgtgagaaacagagaggatgcaaggataatgc
cctgacttatggcaagtcctaagcttttcgttcagttaaatgcatattgaccacctgaagatggaaatgcatagaagggttctgggtagactcaaattac
aaagcctac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1251 chr4 87423547 87423714 RIP_Alu_chr4_087_02 0 + 15570 NA NA SINE Alu Y atccagaaactccatgtttgctttcaggacaaaaataaaggaatacaaatgttaaaaacttacagtgagctgctaaataagtacaactctatgaacacaa
ttggataaatttgcacactatggacacagtagctaagtctaagtttctattccctacccggtaatatgtttaccaaaaaaaacccaaaaaaacaaaaaag
atatcaatgataaagcacttctaccaattagttttatcctccttaaaatacaacgaagcagaaaagtggcaattttacaaaaattactctgggtccagtg
atcttttctagtatttttttctacttttcctttcaattgctttttcctatgtagcacaagggtcaaaagatttcttggtccattcAAATTTCTATCTCTA
GCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGAT
CGCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACACCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATTTCTATCTCTAtttgatgattttagaaaa
ttagtgatgaaatattatacagcataccaaacatgtgttattgtaagcaaaaatagtatttctcaatgtttctgtttcacaaagaattactgcttctttt
caaagctacttctatatgtaccatcctgcttcctccgaaattgttctctaacaattatttttggtttcttgagtctctccatttctctctgggaatctct
cagctgcctgcttgatgttcctacatctctctgtctgtgtgttctctcttcctcttcctcattgtgtatctgtcatctatttctctctttcttgctattt
ctgtgtatctttcttcttctgtctctctgtctcattctcctcttttactctgtctcagagcctctct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1254 chr4 87742872 87743163 RIP_Alu_chr4_087_03 0 + pAlu4-87778373 NA NA SINE Alu Ya1 aaacccatttagctgactttgtgggtattctcgataaccattttcttaaaacgaaactgtttccatttttgaaattaactaattggattttccctaaaat
aactaatttaaaccaattgaaggtgctaagaatgtttttacagatgggtctagtaatggtaaagcttcttattctggatcaaaaggtaaagttttccaaa
tgctctatacttcagcttagctgtaattgaggtattcactgcttttgatatgcctattaatgtgatttctgattcttcacacgtggttcattccacacaa
ttaattgaaaatgctcagttatgatttcatacagatgaacaactgatgactttctttactcaattgcaaacagcagttaagagtAGAATGCACCCTTTTT
GCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTCGGATGCTGAGGCAGGCAGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGC
GAAACCCCGTCTCTACTAAAGTACAAAAAATTAGCCAGGCATGGTGGCGGGCACCTCTAGTCCCAGCTCCTCAGGAGGCTGAGGCAGGAGAGTGGCGTGA
ACCCAGGAGGTGGCGCTTGCAGTGAGCCGAGATCATACCACTGCACTCCAGGCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAGAATGCAC
CCTTTTTacatcactcacattagggctcatacacctcttccgggacttttgactgcagggaatcaaatggctaatcgcctagttgctaatgcaatatcta
atgctagacactttcacaatttaacacacgttaatgtctctggtctcaaacacagatacagcattatctggaaagaagctaaagctattatccagcgatg
cccaacttgtgaaatggtacattcctcatcttttacaggaggagttaatcctcgaggattggaacctaactctctttggcaaatggatgtcacacatgtt
cccttgtttgggagactagcttatgtacatgtatgtgtggacaccttttctcactttgtctggactacatgccaatcaggagagtcttctg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1259 chr4 88389331 88389648 RIP_Alu_chr4_088_01 0 - pAlu4-88424830 NA NA SINE Alu Yc1 acattatttgggtgttgtgatggaaaaaatgttttcataagggattgattaaaaatattttttaggctgggcgcagtggctcacacctgtaatcccagca
ctttgggaggccgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatta
gccagacttagtggcacgtacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagat
cacaccactgcactccagtctgggtgacagagtgagactccatctcaataaaaataaataaaaatgaaaataaaatatttttaaaAATAAAGTTTAAGTA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG
GAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAATAAAAAAAAAAAAATAAAGTTTAAGTAgataaaagtgccaaggttttaagactttcaaatatcctgggaatattttatctttgtttagaggatca
aagtttggactttcatttcttcctctgcgtctcctcatcccacccccaatctgccctcccagtgctggtgcaatccaaatactgcaaattggaaatagga
aaaaaaggatataattattttttattaggtgttttaataaattggcaaaagttagtatatttgagaatgaattatgattttgaattaagaagttttgagc
ttattattatgcacaatatagatttactcttttagtaacactacatagctatggggaatatgagtgcaaaatttttttttaaaaagagcattaaaaaaat
ggaagatacacactaat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1265 chr4 89132828 89133131 RIP_Alu_chr4_089_02 0 - pAlu4-89168327 NA NA SINE Alu Yb7 ctcctagtttcaagcgattctcctgcctcagcctcctaagtagctgggaccgcaggagcatgccaccacgcccggctaatttttgtattttttgtagaca
atgggtttcaccatgttgctcaggatggtctcaaacttctggactcaaatgatctgcccatcttggcctcccaaagtgctgggattacagtgtgagtcac
cgtgcccagcctgattgcatttttgatcttattgctggtcttgtaggtttaggaaatgctgtagagctcagcatattgatattagcaaagcatttgacaa
aattcttttgtgagcatatctaggccagttaataatagagccatagtcattattaaccaaacagctgcacccaaaaagtattgattAATAGATCAGCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAATAGATCAGCATCaggctacaagggggccaacttcaatatgctgcaggcactgtcctagcctgccctctgccctgttcaaaatttcttcaaactgg
tgaatgaacacccaggaagtatttgcatcttaagaactgggagtgatagttaatatttaggatcacaaaatcgagattgaagaaacttcaataaaatagc
attgtgaaatagagcattatgcatcctggatcagaaaataaatgatataatactgtacaaagagcagagctggtctaatattgttttttatggagtaagc
acatgagcaaacaaaaaccagaaggaagttagtacttatataattagaaattaaataaggagaaagggaaactaatatgaatttagcctgtattttggac
caa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1267 chr4 89394865 89395183 RIP_Alu_chr4_089_01 0 - pAlu4-89430373|238956 NA NA SINE Alu Y aaccccccgcgctcaagccatcctcccacctcacccaagcagctgggactatagacacatgccaccatggctatctaatttttgtattttttgtagagtc
ggggtcttgccatgttgcccaggatggtctcaaactcctgagctaaagcaatctgctgtggcctcccaaagtgttgggattacaggtgtgagccactgtg
accggcagacactacttaattttctggtaactatagattgcagctttagcccttgagtgggtatcggtcaatagagtggttagtcctaaacctgacttag
atgggccaaaatttctaacaatcttggacagcatggttctttttatttcaaattgaaatgtgtgatttttaaaattttagatAGAAATGTGTGATTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGTGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAATGTGTGATTTTTTttaatggcttgtgcggtctgcatcattttagatatatttggatatgattacaaatgattcccta
tgatcctaaatataattttagatattcattggccatgtttcttaattaggttttaataaaggggatgaactaagagtcagacttcaggccacgctgagtt
cagatgatctcatcatccaaagctgaatggttcaggtgtgctgtgctggccatgttctatcgagaatactgctcaggggatttgttctctatttggaatt
acagcagcacagcagttgatttggatttctgaattaattaattaattaatttacctttgagacagagtctcactctgtcgcccaggctagagtgcagtgg
tgctttcagagctcactg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1271 chr4 90038651 90038960 RIP_Alu_chr4_090_01 0 + pAlu4-90074152 NA NA SINE Alu Yh9 caattataaacaaaagtgtttatgaaacagtttgctcacaaatgtattccttaagtagcacagatgggtacacaagattttctttaggaatagctagaaa
tgtattttggcaaatatactatcattaaatgaaaaaactaagaacatctggaaatcataagtgatttcattaatgtatgagaaacgtttctgtgctgaaa
gcactacttaagacttgcagctacttttaatagccacccaaccaacccactttgaaatcatcagggaatagccagggctttttactattatatttccatg
aaatgatgcatggagacatattttcttcacatttgggataaaatgaaataccatcaatcgggtcctgatgagctactaaagtcttatAGAAATGCCAAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAATGCCAAGTatatctggagatttaagatagtttaaaaatgcagtttgtttactggggaaaaagccagattaggcatttatgtcacaa
aaagtatttttcccttaagctaaagcctaagtggaccagggttaaatgcccaaatctagttctcagctttttaaattacaaagccactcagttaccaatc
atgagtgtgcctgggttgcgggggaggggtcgtgggcggggggaagcaaaagagagtaagaatatgcatacagcaaataagcattttctcaaaaagattt
ataatgcttattacctttacagacatcaaaaaatactagaaatatgatttcatttttaaagtatggtatttccttcacgaggaacatacatcaagtcatt
taagccctc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1284 chr4 91739387 91739696 RIP_Alu_chr4_091_01 0 - 7235 NA NA SINE Alu Ya5 tcctgttacttagtagagtgccaggcacaaaagaggcactcaataatctttggtaaatgaatgagagactgaagaaaagtgaagtgaggcatgggggaaa
agaaaagatgctagccaagcacaggaaagagtgtgctaaaaggcattgagatatgagaaaatgttatatatatattgagaaatggaaataattcaatgtg
attggggcctagacaagacacaagacacaagaagttaaggaagactgagctggaggcataggtcatcggcaataccttaaacaccttctaaacttaaaaa
cttaaaaacattagtatttgatcctaaagttaatgggaattgataccgatcattaaacaaagagcaacatgatcagctttatatatttttAAAAATAGCC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATAGCCtgggcaacacctaagtacaggaacaagactgagtgaaaccactgacagcactattgaaataaacaaagtgagaaatggtga
gggcttcttattatttgaagtagcagtgtagtggactagaggggaaaaagtcgagtgcagagtattcagaaatgttaacacttcatttcaaatatatagt
cacagtctatatctacttattttctttattaagatgaaatacaattctcagcacattacaaaatcagaaaatacagccacagtacagatgggtgtgagag
aagagccatcaaaagaagaaagcaaagaccttcaaattattaggagacaatttagtttacaatttaaatttaaaagtattctatacaaccatattattta
aggctaata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1300 chr4 93750256 93750562 RIP_Alu_chr4_093_01 0 - 12299 NA NA SINE Alu Ya5 tatgcacctacaataatgtctaaaattaaaatgtgtaaccacaccagtattgatgaagatgtggagcaactgaaactcttatacattaccagtgggaaag
taaaatgttacaactcatttaaaacaatttgaaactttcttaaaaagttaaacttataccaaccaaatgaactcatcattccattcctaggtatttaccc
aaaatttcaaaacatatgttcctatacagacttaagtgtaaatgttcatagcagctctatttgtaacagccaaagctgaaaacaacacaactgtccatca
acgtgtgagtggataaacaaatcatagtatagccatccaatgaaatagtataaatttataacaagcaatgaactattgacattcatAGAAATATGGATAA
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGAAATATGGATAAatccccaaataagtatgctccgttaaagaaacaaggccagaaatgcaatgtagattgtatgattctgtttatataagcct
gtataaaatgcaaactaatacagtgaccagaaaaaaaccacgttttcctgggtatggaattgcagtcaggaagtgtgggtgagaagaattacagagaagc
aagggagtttggggggaatgatgactactttgtgtttacaatttttaagtatgtcagtatttatcaaagtgtacaatttaaatttgtttaagttagtata
tgctggtcatacaataaatattttaaaatgcatgtgtaaattatttttattatttcagttggttgtttatgtttattattaaaatgttaacagttagagt
taaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1316 chr4 95856150 95856458 RIP_Alu_chr4_095_01 0 - Ya5ACA1197|pAlu4-95891648 TCCATAACCTGTTTGCTTTTACC TGCAAGCCACACAGAAGACT SINE Alu Ya5 tttattttcagagtaatcaagtttttattgtcctaatatctagacacttgaaatcaagctatttttaaatacacccagtttgcaaatgcaaagcagtaac
ttgcctgaaaatgatgcaaaatatgtagtaatctcttttctcctgaattttgcacagtgctggacagcaggcatgtgcttaataaacactgccaattgat
taagaagccatcataaaggctctataatactgcctagtttcagtttaaaaataataagctttaaatcatttcaagttttatcaccaaagctgtgcttata
aaacacaaaacttaagcttggtattttcagatgttttaaatgcagtacttttccataacctgtttgcttttacctctacaactttctattaaGAAGAGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAGAGTTttttatgagatttcaagaagcactagtagaaaagattttagttaagacacttccttcaatggatgtttttctactgaacttgga
atttaataaacatggtaaacttctgttttagtcttctgtgtggcttgcatttgacagacagcatctttctttgcaggatatctactctgattactcgaaa
atctattgtcttaaaataaacatactaaaaaaaaaaaaaaaaaaaaaagattacgaccaaacactcctgaacactccatactgtttctcttcctcacatg
aaagaaacaataacattcttttttgaaggatactagttttcctcaatatatatatatatatatcagaactttagaaagccacccacaacctcaagaccgt
atgtacag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 498 182 NA intron
1332 chr4 97929292 97929599 RIP_Alu_chr4_097_01 0 + pAlu4-97964793 NA NA SINE Alu Yb10 ccttttcctctccctatggctttgtgaacacgtctgtccaacactgatatttcttacaagtgtcaggaagagagaaagttattaaataggtaaaaatcgc
cctaaatgcctcaaactccttaaatatatgccagttttcctccatacctcatacctactcagtatttattgctttcttttcttatgttcaaaatctttca
aatctttattttcctaatttttttgtatcaagttaataaagaagatatactacagtgttttccttcctcatagtacttgcattttcaccattaaatacat
tttaagtgataagtgtgatgctcaccagaggtcctgaatttgaaagaaattttccacgttaatgtttttcaattcagtgatgtgagaaAAACAAAATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAACAAACAAAATTTCtaggacacttgcatgaaaatgtatgtgggtgaggaggagaagggattgtccggatgtaaatatgactccttggacaattat
gacacatttgttccactccccactttatgactgaaaaacagtcacctgtctatcaagtcaacttaaatcagtaccatcacccttcattctgttgccagcc
acttctgctttcacctactttcagattctgtcccatatcatgaggaacctttgtcagataaagcccaataactagcataggatatgaagttgtgtcaaat
aacaggtattagaaaataaggaacatgcttccttatctgataaaatttattcctttaggacaattctggttggtctgagagttgatttcttcccttagac
agatagt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1334 chr4 98254388 98254709 RIP_Alu_chr4_098_02 0 - 12119 NA NA SINE Alu Ya5 gagaaaaataaaaacggacaaaacatctttttagtttaatagcagtattgtgtatatgagagatgaaaatagagagggtagaggcaaatgagagagaaag
gacctatttggtcttaaattttacatatattttataagtaatcataatctttctgtttttactctagaaacagaaacagaataggattaatcttttattt
ttgtaaatgaaatattttcttaatcttttattataagaagtcattgtataatgtttacaagacttcgactgtttctaagaaatgttctacgaatatgtat
tttaacttggtcctacctgtgtgtcaaattatagctaaaagggaggaggaagggttagaaaagaaaaagataacttgtgaagactAGAAATGAGAGACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAATGAGAGACTTgcgtgtactttggattcgtattaatagtctaaaagttaaattatttacacatatttcgaactct
ttaaccatgttctattatttgaactcaattatcatcgggtttaagttgggttcttattaataaaataggtcccttcagaaggcacattagtgctttaagt
caagagtatattaatagttttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaatggtgaaaccccgtctctacta
aaaatacaaaaaattagccgggtgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggagct
tgcagtgagccgagatcccgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1336 chr4 98467834 98468148 RIP_Alu_chr4_098_03 0 + pAlu4-98503335|54298 GTCTTTGCTCAGGGCAGTTTTGG GTCTACGAGGTATCTCCACTTAG SINE Alu Ya5 gctcacagtgtaatttgatcctgatccgtaacatcaaaggtgcttccatctaaaccctgaactctgccttctgatgaagatttctgcaattactatagaa
gagggtgtgcgtgagtgcgcacgtatgtgcatgcatgtgtgtgcacttctatttaaaaattattctaatgtaattttaatgattacatagattgcctatg
aaataacaagtgaggatttttttactaaattttataggatacataaccaaagtgagtgttctacttcaaagagttcccttgggggaacacaatttattcc
atttcactgtctttgctcagggcagttttggaatgaaattcctctgaagaatttgccttttaaaaagaaaaagaatttgcccttagaaTTTGCTGTAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAGTTTGCTGTAGAGgaaaattgtcaacctcattactttgtagtcataagacatgctctcttatcctgaacctttattttctcttcttt
tcccttcctctatcctaattttttgatgttaagttctacaatttcctctttacactcaattgttttttgcaaaacttattagaaatctaagtggagatac
ctcgtagacaggtagataatgagagatgccatgggttttaaatgtaaaactgggagtcagaagcatgccaggtatttctgagtcatgagactgccttaga
tcatcaagaagtcaatgtatagacagaaaaagacatgagactgtggtcaaaaacttgggaactttaagatttagaagacatctgcgagaagagaaacaag
ccaagaagactgag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping|Genome comparison NA 0 0 0 NA intergenic
1336 chr4 98490568 98490867 RIP_Alu_chr4_098_04 0 - 12977 NA NA SINE Alu Ya5 ctgcagcaaactgattgtgcactgcaaactgcaaactgattgtgccactgcaccccagcctgggtgacagagcaagaccctgtctcaataaataaacaac
aaacaaacagacaaacaacattgatacaatatgatacaatatcgagcatttggtgccaaacagcaggcataattctgaataacagaaactgtttagtccc
aatactactgctgacagtacctctagtgtccttattcaaataaataatcttttattagatgataatagcaaatcctaatacagtaagtcttcacttagca
ttgtccataggttcttggaaactgtgactttaagtgaaacagcagaaaaggaaaccagttttaccacaggctaattggcataaacAAGAATTAAGTTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATTAAGTTCCTatggcatatttatggttacaaaaacatcaccaaactaaataaagaccaaaacactactaacactgaacatagaaataattgtaacc
tgtatgtacatttaagaaagattaataaaaacaagtaagatgattatttaagttcaaggtagtagatggacagtgcctatcccagcatctcaggacacca
ggtggaaactgacccttgacaggatgccatcctcttgcagggtgcacacacacacacatacacacacacccatactcactcacttggactgggaccatgt
agacatgtccattcacccaacccagagaaaacctatgcagacatggggagaatgtgcagactccacagggtcaatggccctggctgggaattgatttct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1336 chr4 98538455 98538760 RIP_Alu_chr4_098_01 0 + Ya5ACA1204 TTCTCATCTAGAAGCAAAGGATGA TGACCAGAACAAAACTTGCAC SINE Alu Ya5 tttttaacttctttgccatgggttcaaacttcctcctttagcatggagtagtttgatcatctgaagccttctttgcctcttctagctaactataaaaagt
atttattgtttttaaaatgttgcacatctttaataaaataatgttggttaaaggagttttttattttgaaaagtactctgtaaatggcagtcatttattc
acctatccattcatgcatttatttatttatttatttattgctttattctactaaagaatgaagtcatctaaatcagtagaacactgattaccaaacctct
gtattgtttcagatgctatagtgacttctcacttctcatctagaagcaaaggatgagtaatatttatgacaacctattcattttAAAATTATACCCTGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATTATACCCTGCTaattcaaatttggttttacatgtgcaagttttgttctggtcactttttaagttatgtttcagtgagaaataatcagatt
gaaacttgcaaatatttatcaataagatggtcagtttatatagtgctttaacttggcagcacctgcttcaatttctcctaacttcctgaaaaagcttgga
aaagaaatacgtcattcgtatttctgttcaagtaacattccttaacgaagccttcctgaccttcctgtgagaaatgatggtctttcctctttctccccat
gttaaggtactttccaacttggccttattttctttaaaacatgtatatcaatgggaaatcatcatttttgtgtatgtattatttaccttctttccaacaa
ggtct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 431 110 NA intergenic
1339 chr4 98947843 98948148 RIP_Alu_chr4_098_05 0 + Yb8AC1219 GCTTTGACTTGCATCACCAC TGGCTTCTGTACATGCAGAGTT SINE Alu Yb8 agactagccaaatgtattttaaggatcttttcaaacattctgatggctgagtttatttttattaaggtaatactttacaaactctgacctaattagtctg
caaaaatatatatactcatgtatattttgggactcctaaaggccacctggatgtcgcatggatgttatatgttatagtctcatacccagtatattaaaag
ttaggcatatgtatgaaggaattgactaataatgcttctattgaagacacaatcttgcagaatcaaacatggaggtttagtttggagaataataagaaaa
ccagtaatgtactgacaaaatgtagctttgacttgcatcaccactgatgttctgttctatttttatttttattttaactttttctttGAAAGTTTATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAGAAAGTTTATTGCatcaagtttcagcatgaagtcattataatgctaatgaggttatacatattaaaagagttacagtaaagcaactctgcatgta
cagaagccaaatttaatatataacaaattggatttattcccaatgtgaagggcttctcattatagataattgctctgaaaagcacatttttttattattg
ctatattcctaacaaaggtaaaaaggtatccttttttaaaaaaattgtaagtataatttaaaaaaaaccctatccaagaaaaataaacttcattaaattg
ttgataacattttttgatgagcaataaagtttcaatcttaaggattcaaattagaaattattaacatgtatttcctgtaatggtatatatgcttcacctc
tgtgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 56 479 161 NA intron
1350 chr4 100380228 100380555 RIP_Alu_chr4_100_02 0 + 238927 NA NA SINE Alu Yb8 tcacaatggcaattaaatttccccatagttttggagggaacattcaaatagtaacatctagctagaacagcctgtctgttggcagaatgaagtagaacag
tttagtgggaacaaggatacaagtgtatttttcatggaccaaatacagactctggaaaggatacggttgtggatcatcgggaaaagaacttcacgaaaga
gatagatgcacagatggatagtgaaggtcaccctggtgaaagccaaggactgaatgcaggtcttaaatggccagttgtggaaagaatcatccttataaaa
gaattgagataggagatctctaatagaggaggagttctctaatagaggaggagttctttgtgaaacccacagaaatcccccaactcaaaaaaAAAAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACCaaaaaacgtagtatctaaaaggtagggcaccaatatcaaattgcaactgtactggccatatgcaa
tgtagagcaccaatatcagatcgcaactgtactggccatatgcaatgtagtctttttctccaggtttcccctctcttctaggctggacaatggaggaggc
ttgaaacagtagctggcaagtggtagaagagatggagcagagaagcaagaagaagcagactcctcactccttcaccagggtggatttgctggtttgaagc
agacctgagttgggagaggagagaggcgagaagttttaattggatgaaatatttctttagactggtctatacttttttctttatatctaaaattcactgg
aagagctatgaaatctgtccaagattt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1351 chr4 100427482 100427782 RIP_Alu_chr4_100_01 0 - pAlu4-100462978|12480|Ya5ACA1202 ATCAGCTTTGCCTAAACCTA GAACCTTTTCTTGGGGTCT SINE Alu Ya5 ggcaagcatgaaaagtgaaagtagtgaagcgcttgcccagccatacaaggccagcatagagctgcagtaaaagcaaaggcatcaagctggaaaatgatga
gaactatagcttttccatacctggcaaaggggatcaggtggattaatccaaagcacacaatggcaaagatcttgcaaggctacttccatttttattatac
cccagggactctaacctcatgtgcctagtctctaacctgaatatcagctttgcctaaacctaatagaggacaccaagatggacccaacttaccagagggg
ccaatgagtgttgtgcagactgaatttccttggcattaggtaacatcttaaggtccttttatagtgtccccagaagatgatgctAGAAAGGGGTCTTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAAGGGGTCTTTTCaagatccagaccccaagaaaaggttcttggatctcacccaggaaggaattcaaggtgagtctcagatttctgtgagaagagata
gtttactgaaagccactctgtcacccagtaaagcatcctcaaaatgaaagcagaggaatgcactgtctttaagtttttcttatataggggtcttgcctat
gtaaagattaaactaagctgtgcctatgtgcaggtgggctgacagcatgactaaatgtattattctactgatttaaagaaaactatccttgatatcttaa
tgtgtaagtccatcgaagcataactatatcttgaaagcatatattgttataggtgttgtaacatctggacttttctgttgtaggactttgtccttgcagg
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison plus genotyping|Genome comparison|Candidate screening NA 0 0 0 NA promoter
1353 chr4 100733985 100733986 RIP_Alu_chr4_100_03 0 - pAlu4-100769574 NA NA SINE Alu Ya5 tctagttgtctgtctgataaatgacattggctagtattccttcataacatctctcatctctagtggagaaattgataaggaaatatgagaagaccaaaac
tagaggagcagttcagcttatagaaatgctaagggaattcaaagggacttgaaaaacagataagctttaaaatatgaaaaatgctactttttaatcaaaa
gtgacattacaattttagagactaaaacatgatgttcaagaaaatgtctttcattgaaagaatacaaaaatgtagactggtagttcttcatagagtatgt
ttttgctgagaacaaattagcctagattttatctttactcttctttttggaaagtagagttatttggggacaaaagattattgatatAAAAGTTGATTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGTTGATTAAacatgtattatattgtaaacttcttggaacagaaactacatcataaccattttaatactgccaacttaaataacaaacagaagaaaaggc
tctccaaaagaaaatgatgtttattcaggaatagggtattgcaatgggaatatgtgtgccacagtgtactatgtgcacattcagggagatgaagaaagac
aaaggttttgaaaggaaaaatgaggcgggatgtggccaagaaagccaactagaagcagctagtgtgcatggctttcatggagaaaaagagaaggggcaag
taaatacaacaccttcaactgaaacatccaggtacccgcattgggactaattaaggaaacaatttgacccatgaagaatggagaaaagcaaggcagg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1360 chr4 101602029 101602288 RIP_Alu_chr4_101_01 0 - Yg6AH28 TGACCCTAGTTTGGGTCTAA TCATGCCTTCTCCATTTAGT SINE Alu Yg6 ttctagtacaagaaatgtagttccaggcaaagcatatttccttaggttaaacatataaaaatctgaatttttagtaaaaaaaaaacaataataaattgaa
gggtaatatattttgtcagtattttttactataaaatttatttaccttacaagctgtatgttaccactgtcatctgcttgatttgcaagcatccagctta
ggtgtcatttttccagaatagagcgttagtatgaaagtgccctgtgctcatgccttctccatttagtaggcaagaaaactaccatttccaccttaaatct
caggattattttaaattaaaggtaattaaaaaatgcaaagtgtcttgaattcctcaatagaaatgtgctacatgactgtgaggttcataatttttAAGAA
GGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG
GTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTG
CACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAAtttaggcccctttttagcagcctaatatctgtcatg
agaagagaaaaggattgatttagacccaaactagggtcattatgggcagcagtatgatcatttgactggaggtttcagaaattcttgtttgaagggtaag
aatgcagaactgccactgctaattagataccaatataacaatagaaaacaacagctgtgggccaggcacagtagctcatatttgtaatcccaacactttg
ggaagcaaaggtggcaagatggcttgaggcctggagttccagataagcctgggcaatatagtgagaccttgcctctagaaaaaatttaaaaattagctga
atgttgtgacacgcacttgtagttccaaatactcgagagaatgaggtggaagatttgct UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 60 492 218 NA intergenic
1366 chr4 102398925 102398926 RIP_Alu_chr4_102_01 0 - pAlu4-102434515 NA NA SINE Alu Yb7 tgatttttgcatagtttccttagatatttgtggtatactgaagaaacaagaaacttaagacccgattcatgtttaaattagagacagccacatatgtaaa
ttttcaaaatattcaaagactttatggatgttatgatttaagtcagtttaagatactgtgacacctatttgttttatagaggtaaacaaaaatgattcat
ctcactgtggcatataaaaaaacttttatatagtgtcttcaattgaacattagtcctgacatgtaaatttaagataatctaatctaagttctcagatttt
tagatttgtacttcttttggacaaagaaaacaatctcatgccttttcttaatgtaatttgaaatttcaaagtgaaaacatcattataaAAGTAAATGTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAAGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGTAAATGTAAagtatttataatttaacaattatttttagaaaaattatatatgctactgcctctgttgagtaatgtgatggatgg
aaatgggcaataaaatgatttgcccatatcagacatcaacgggagacctaaggcctaaacccgtaggagtttccagtacagagagggaaatccactgatg
tcaggaagctgatgcttttcagtaccattgtttatatctacatcttctcaagtatgcccttcttgaagccatatttttatttttgttattatcccagtat
aatgcagcacaagtgaaacgtcaaccagtcttcagtgtttattcatcttttaatacagaatatttagtaaatatttcatgtttcagtgttttattcattg
tttggatatttaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1374 chr4 103490535 103490536 RIP_Alu_chr4_103_01 0 + 1387 NA NA SINE Alu Yb8 tcttaaactcctcacatcgtgatttgcctgcctcagcctcccaaagtactgggattacaggcttgagccatcgcgccaggccaagacgtgtcattttcaa
taaatcattgaagttgtacggacttactggtaaaatgaggttctgtcttgtccccatttgccctgctgggtgcgtctatcgaagttactttgatctactt
tatgcttcctccttccttggtgcttttcagagtgcaacacaaaacacactgggttatcacagttcagctctaattctgtgagaatgccaataatgaggat
gatcgattgatgggtaatagaacaaagccttgcatttgaaatgtaggagacaccttacaatagtaaaaacttaagaggactcaAAAGGTCCTACAAGATG
CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACC
CCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCG
GGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAAATA
AAATAAAATAAAGGTCCTACAAGATGtagaaaacataccatattatcatcagttttaattacaaaataataaatattagcgttattataaattgttcaaa
tttacaaccattctgttaacatgtgataacttgagcctgacacatagctgtagttttgcagcaacatagatgtggctggaggccattatcctaagtgaat
tactcagaaacagaaaaccaaatagtttataagtaaaagttttataaaatataaactattttatagatagtatacttcattgcaattacaacaaagagta
tgttttctttaaatggagggaatatcattgcagttctcctttcaaaacaaaggcttcagagaaatgattaaccaaaagatctatataatagaaatcaatt
gtttcttaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1386 chr4 105102220 105102221 RIP_Alu_chr4_105_01 0 - pAlu4-105137815 NA NA SINE Alu Ya5 gaggtcgggagttcaagaccaacctggccaatgtggtgaaaccccatctctactaaaaatacaaatacctgagcgtggtggtgcatgcctgtaatcccag
ctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtggggagccgagatcgtgccattgcactccagcctgggcaacgagga
agacaccatctcaaaaaaaaacaaaaagaaaaagaattagtagcatctctttgcttaacctgtctgagatcagttggacagagaccaatcaaatatggcc
atgtctctattaaaccttggctcagccaggttattctgcagggctcttatactaccgccttaccctgtgtatgaaggatgctgctAAAAAAAATCACCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATCA
CCTAtggtgctgtgtctatgttttgtggaaataatatggctcaagaagactcaatctagccatctctttcaagctgcccaactcatactgtcctgccaaa
tttactctcatgtagctgcatgccagttggtacagagtggccaatgaggagtctgcacgtacactcccaacggtgattatgagtaacatgtgtctgctcc
tagcttaaattatgatcattaacataatgtactccttagtaagacaaggcccacagaaaagagaatcagaacataattcagaaattttttgtctcttttc
tatttttgtttccacacttcccttagggactaaagaataaattaacagtttcttcattcatttttctgtatagatttccccataatatt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1407 chr4 107777403 107777700 RIP_Alu_chr4_107_01 0 - Ya5ACA1145 GGAGGTTTGAGAACTGACCG CCAATCAAGCTTTTCTCCCA SINE Alu Ya5 caggagttgaatatgaggcatgttgagtctaagagatattgctggatacaggaatatcaggtctggacaaaagatggtcctagaggtatgactatggaaa
taattaatatacggataatatttaacactgtgagtataaagaggaaaacagaaagaacataatatttcaaaattaagaagtcaagaagaggattcagcca
agaagactgagaagtagcaaccaggaagatggaaagaaaacaaaaagaatatgataccttggaaaccaagtgaagaaagtttattaagaaagaggaagtg
atcaaatgtgtcaaatgatgctgaccagccaagtaagaggaggtttgagaactgaccgtcagatcatggaggttattggtgaccttaagaagagcatttt
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAgcc
gggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaa
accccgtctctactaaaaatacaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaa
cccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaagaagagcattttttttttttttactcaactgggagaaaagcttgattggatcagattaagagaaagggagaagaattacagacgaggaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 719 400 NA intergenic
1420 chr4 109465294 109465579 RIP_Alu_chr4_109_01 0 - Yd6JXH44 CTATGACGTGTCCTGCCTTTT AAAGTATGTCCACGTGGTTGG SINE Alu Yd6 aaataacaagaaccttggatttcacaatcctccccgcatcttgactctagcgtgtctttgtactgacttcaagtctagacaaagcttaactttttcaacc
aattgtcaatccgaaaatctttgaatccgcctgtgacctataagtaaccccctcatactatgacgtgtcctgccttttggggccaaaccaatgtatacct
tgcatgtattgatctatgtctttgttgatatcttctgtctccctaaaatgtataaaacctaactgcagccagacatgcagctcacacctgtaattccaaa
actttgggaggccaaggcaaacggatcacttgagcccaggagtttgaggccaggctgggcaacatggcgagacctcgtctctacAAAAAATACAAACATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATACAAACAT
Tagccaggcatggtggtgtgtgcctgtagtcccagctactcaggaaattgaggtgggcagatcacttgagcccacaaggtggaggatttagtaagccatg
atcgtgccactgcactccaaaaaattgtaacccaaccacgtggacatactttctcaggacctcttaatactgttccccaggcctgggtcactcatattgg
ctaagaataaacctctttaaatattttacagaatttggcttgtcatcaatagttttaagatcactctgtgagctttgcagacaatagcaggtacagcatg
gtagaaacagggagacctgttaggaggctatgataaatatctagatgaaaaatgattgcagcttgaactaggctggtgagaagta UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
Candidate screening NA 60 695 394 NA intergenic
1430 chr4 110856361 110856669 RIP_Alu_chr4_110_01 0 - 237808 NA NA SINE Alu Ye5 tgagttatcaaattttcatacatcaaccagccattcagatttcaagaactatattcccatatattggtttatgagcacttaggaggataactttaaaatt
taagatactggattttttgtgtgtggggggaagagagagagattggttttaagcaacaaaagagatagctatgtactaaactctaattttgctacagata
cgatactgagccaaactcttttgaagttccttgcccaatattcttggattatttgaagtcatatttgacatctgactatgcaaagaatcaaactctcttt
taattaattgaagttttccacataaaactgatgtggctaggtcacttttgtggtcccttttaatatttaatctcataggtcttAAAGAATTCAAGTACCC
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGACCAACATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCGGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATTCAAGTACCCattttaggctatgaaacgatcaagttttagcaatattcaaagctctacttcaattaagtcaggtgacaggctggg
tctgagccttagttgctttatcagttgatcaataaatacagggtaatatcagtacctatttcccaggactcccagaagtgagggggactgagtgagacaa
agctcatgatagtgtatggcacatgctaagcattagctatcgttttacatgtattattaatgaaacaaaaggagtgctgacttcaaaagctgctggtatt
aaaaactgcacaggatttacttggaaaaaattagctctgtcattaaaaatgattgaataaagcacctgaagttttaacctggactgaggatttttccatt
tcagtttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1437 chr4 111740825 111741136 RIP_Alu_chr4_111_01 0 - pAlu4-111776324|Ya5ACA1217 TTTGCCATTTTCTTGTTTGA TTTCACCTGGTTCTTTTTGA SINE Alu Ya5 catctactcaaagaacccacagatttcatcacgagtatgaattttctcctgagagtcaaggtcaaaactatgcctacctgtgtccacttgcatattccac
caacaattcagttggtctaaagctaaagagtatcactccccacagaaacactgtagctctgcactccttaccatgtttcatttctccatcagcattacaa
tcattttcctcagtatcaaccaagaccttccctctctctcacagacggctagatatattataggtgcttgtcaatttgtagcttctctttctcatctctt
ggcactttgtataggttattttgtatagctttaatttgccattttcttgtttgaattttaaaaatccagagcagcaccgattaatAAGAGATAGTGTGAG
TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAGATAGTGTGAGccatagccatatgtgtaaatataaactttcttagtagccacattaaaaattcaaaaagaaccaggtgaaaataa
ttttaatattatggtttatttaacccaatttatctgtctgaaatattattgtttcgtgtgctcaaaataaaaatatgtacttaatataaaagttaataat
gtattttacatttgttggataacatcaaaacctagcatgttttatgcttataccacatctcacttaggactaaccatttcaagtgttcaatacgcacatg
tggccagtcgctgccctagtgaacagcacggctctagagctttaagactatcttatgcttgcttgtgttcatgacattttgtacaatgtgtagcacaaaa
atgtgtttggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 462 136 NA intergenic
1440 chr4 112166373 112166663 RIP_Alu_chr4_112_01 0 + 6172 NA NA SINE Alu Yb8 cattctctgcttttttatgttttagagtctgtgtttggtgctaggttaaatattattcttttcttgcatttctccatgaatatctacttgagttttgaat
ttgaacatatccagttttttaaaaaaattaaaagaggaatattttggaggagaaggcaactgcttttcatctcagtaaattcagaaaacaacactaacgt
gttttgtaaatactgacttaaaaataggaatgaaggaataaatttgagagatttctaaagactctattaaaacatttgttaacacaagccttgtttactt
cacacaattaatgtataatttaatatctatttttaaaaggtaaaattattactctcatctgatataagatgaccatacatcAAAAATTTTACTTAACTAA
CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA
AAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGCGGAGCT
TGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATTTTA
CTTAACTAAaacaatttatttaactgattaatttatgagaaagccagtgggatatatagcaagattaaaagagaaatcaaagtaccacactcttattgtc
agattaggaatgctgcaataaattcgcaaatgaatgccaaactggcaaaactggtcaatatctatagaacaataatcaactgcatttcacagaaacaatt
tacatttctataggcaggaattatttgtattactatcaaatttctacaagtgttctacaagttaatgtccatcactacagttataaaatagcctgctcaa
agactaaaattgtgtaaaattttgcacatccctaaaattgggcatataaaggtacacaactcaaaagtatcagactgtatcattctatta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1453 chr4 113827592 113827885 RIP_Alu_chr4_113_01 0 + 11642|Ya5ACA1174 CAGGCCAAAGTTCTTCACAA TGGCATGCTGCTATAATGTG SINE Alu Ya5 gaacgtatttaccaaagaacttgtaggctaaaattagagagtgagctagtcctaatttaattcctagccatcagaaatcttaggtcatcgtatctccaaa
tttttattattcctacatacaaaatggaaatcaacaaatgtaagttacttaagccacaagcccattaacaagaacaaataaaagacatattttgatattc
agacggaaagtatcacaatatcaagcatttgttaaacatctaggatgacgcacatattttatcttctagatgaggttagacaacatacattatatcaaca
caggccaaagttcttcacaaagaatattaaatatgctaacgaaatattctttgcttaaccttcaagcacattagttttatttatttAAAAATGTAAAGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATG
TAAAGATgactaattctaaacaacagtaaataaaatgtactcatagcctgtaagtgtatttgaatcttgtaagttacacattatagcagcatgccattac
tctcaaggcaaaaagcttcataaaaactgatttttaatctctagaattagatgtaaacaatagggaaatctatgaattttctaattagatgtagtcactg
acctagtagcccgctatctatacacacatgtgtacatacacatatacacacgtacacacacatttgtgtacatatacatacgtgtgtataaacacaaaca
catacacatacatgtacatatacatatacagtcatgtgccacataacaatgtgatgttttggtcaatgatggaccagatgtatgatgatggtc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 496 189 NA intron
1469 chr4 115982212 115982474 RIP_Alu_chr4_115_01 0 - pAlu4-116017714 NA NA SINE Alu Yb9 agaaggtcatgtagttgaaatcatacattatgtagcctttcagattggcttctttcacttagttatatgtatttaaatttcctctgcattaatcaaataa
ttttatgtatagaattccaggcttcactaccagaaattatgctttggtaagtttgagataaggccaagaaatgtgcattccagaggattctaatacaaag
gtacatttatcagtttttgagaaacactgttctaaatgtcctaataataaacacatgatgctctttcctatagagtcagtcatgctcatggcaatatgcc
aaatgcaatcaagcaaaataaatgatgtgttacatttatatataatataatacagtttcagggcataattttctgataatgtggctattAAGATAGACTT
GTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCG
CCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAG
TCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACAAAACAAGATAGACTTtagagtatctgggtgtggaaactaggg
cccaaaggataaaatgagaagggcacatgtgccttgtgtggccagcacagtgttttacaaacaaacaaatcacatttgataaatgcccttgggaattatt
catgctcttgatatatattttgtgtgtatatgtatatgtacatgtatttgtatatgtatagaaatatgtatatgtatagaaatacagactaatctacctt
tacttgagtgggcccctaaaggcctttgggcttgcaacctcaattatagcaatggttttcagattgttcattgcacagctgggggtcccactaaagacaa
catggttcaataggagtccctggggtaaactcttctttaaatccattttatttactggactg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1482 chr4 117609091 117609401 RIP_Alu_chr4_117_01 0 - Ya5ACA1233|Ya5-MLS47 CACACACTATCATACCCGAAT AGCAGTTCAGAACCATCCTA SINE Alu Ya5 atcatacatttcctttttcaccatttttccaatattctacctaatatcttgtacatgtgctactactatgcaagttccatctgctactcgtcaatttgtt
gtagttgagattctaagttgcctccttaacatgaatattgcctttttactttgccattatcagttcttcagaatggagagtgttattctatatttataaa
ctatgggttattaatttttaattttttaacttttatgttggagagacctttctccgttgccaagactgagtacaatggcacgatcatagatgactgtaac
tttgagcttctgggatcaactgattctcctgcctcagcttcctgagtagctaggactacaagcacacactatcatacccgaataagcttttaAAAATTTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATTTTgtagcgataggggcttattacctaggatggttctgaactgctggcttcaagtgatcctctcaacttggtttcccaaagtact
gcaattacagggttgagtcaccatgttaagtctatgtttatttgtaatatttgatattatcaaattactggatatttataatacatatgtaatttcaaac
tgtagtaataaaatgaatacctgagtacataccacttaatttaagatcttatcattttaatatctcatcaaaatagtacaaaatactgtagagaaatgaa
agcataatggttttatcaatttttgtttctataaaaaattaccttgactgggtaattgataaacaatataaatttattgctcacagccctggaggctgag
aagttcaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization|Candidate screening NA 60 398 80 NA intergenic
1503 chr4 120371402 120371403 RIP_Alu_chr4_120_02 0 + 30866 NA NA SINE Alu Yb8 gcaatttatgggttaacttgtctttgaagttcttttttactcatcacccttcctctgccccaaatagaactgactttttttccctttatgtccctactgc
ttccaatacaggctatttttcatagcccttttagtatagtaagcccacaagtctagcacaatgcttgcttatctgattctttgatagacacaaacataat
tcatggaccgtgaattatggaccatgagtgcctgtggctaaatgttggaaaagtggaaagggtcatctctgccctcatagcttacttatagtcacaaaat
aaaaacttgcagtccaaaagtcaaaagcactcccaagcccactctgtgtcacagatgtcacagatgatatggatttacAAAAAAAAAACTACGTCAAACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAACTACGTCAAACTttgtttttttttttttgagacggagtctcgctctgtcgcccaggctggactgcggactgcagtggcgcaatctcgg
ctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccgcgcccggctaatttt
ttgtatttttagtagagacggggtttcaccttgttagccaggatggtctcgatctcctgacctcatgatccacccgcctcggcctcccaaagtgctggga
ttacaggcgtgagccaccgcgcccggccagtttgacgtagtttaagggatctgatttatagacctcctaaagtcctgtgcttatttaatattttcaaata
ca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1503 chr4 120374855 120375158 RIP_Alu_chr4_120_01 0 + Ya5ACA1242 GCGAGGGCCTTATAAAAGATG ATTGGGTTTCACATCCGTGT SINE Alu Ya5 ccgaacaaaactgtctgctttctacatgttttccacagtacccctacttgcttctacctaacattcaacatcttgtaatttcttatttgctaatccattt
cccctagtagactgtctatgaaaggaggcatgtagttcttaacccaactggaattttagtatacatttgttgaattaacagatgaaggaaaagcatacgc
tttactattaactatcctcactataaactaatatatgtcattgcctttgcggctaacctcagatgtcacaaacctacaatgctaaatctgtcatactaag
gatcctctgtgcttttgttaagtttatccaggctatggttaacttcagaattctctcctttccagtgactgcgagggccttatAAAAGATGCTGCAATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGATGCTGCAATGAatttctttctttatttcatttgcttgcttattattcttattccttctacataaaacgaacaaacaaaacaaaacaaaagc
acaagctctggtggcaaatagacacggatgtgaaacccaatttcaccactgctagctttatgatcgtgaaaaattagtcttttagtttcagtttcttacc
tataatacttacatccatatcataggattgtcaaagaattaactggtacatatcaaggcctcctggtacatagtaggatgttggtaaatatgaaacctat
taaatctcttttttctcttacccctttctcataactcccattattacagcctcaaaatgcttaccacctgattattcagtacacgagctgcttctcatat
ttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 471 151 NA intergenic
1513 chr4 121765265 121765575 RIP_Alu_chr4_121_01 0 - pAlu4-121800764 NA NA SINE Alu Ya3 agaaaagcaggactcctgtctgttttcttcccattattgaagccttagagcctaataaagtgcctaacaaataattaacactcagcaaatgctgctttga
ctgagggcattatggtgttatccaagtacctcttaggataggtagcatggaaatagcgatgcattataacattgcatattctcccaagtttatgcaatct
cttaaaccatgccaatacacatattggaaatctggggcaagtataaacgtttaggactctattttcactaacaaatacaccacatatcacaaaggatagc
caagaaaactcctctgatgaggagaacaattatgcttttgtacttgctttctctagagcatctctcttaggcatatattatccttttAAGATTTGTGTGA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGATTTGTGTGAattatatttttcctattactcttttccctcctgtttgagttactggatttgagctgtagatgtaagttctttctttg
tttccattcctatattggtatatttatcaccaccaagagtttctagttgatttttccaagtttctctgttataagttttatcctgttgtttgtctttcac
tggcatttccattgataatttacttttcttctttgatatttaacaagcatttatccttcaacttttaagtttctcaagaatttacttccttgaggagcac
aaagcaatgtgtaacatttcaggagcttgagaaatttattttaaatttggtaaaaaacccaacagtaaggttaggtcacactggggagcaagacttttta
gatcaaacaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1517 chr4 122166547 122166851 RIP_Alu_chr4_122_01 0 - 237878 NA NA SINE Alu Ya4 gtttatcataaaatggaatattataaagattttatgataatatttctattatgcttagcaacatgggtgaatctcagtaacaaagccttgagtgaaataa
gctagagaaaatggaatacatctgtttgattccctttagctaaagtttgaaagcaggtgaagctaatctataaaattataaatcaggattgtggttacct
cactgtgagggtagtgattagaagtagatatctggggagactgtttcttgatctgtgtgatagctatatggctgtgtttactttgtgagaattcattgag
atgtatgcaccaagtttctgcgcctttcagtaattgtgtgacacttcaataaaaagtttagttaaaataataagacagaacaacaatAGGATAAAATGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGGATAAAATGTCtaggctgtgggtttctgctttagctgggctgtcaagttgtggtaggacctaaataataagtgtagcggccatctgaagaagaa
ctaggtgaagaaaccagattgtagcagagatgacaatgaagtcagattgttcaaaggacagaaacaaagcagctaggctaatggttagtggatgagagac
cagtagtggtgtgtaggattagagaggcaattctagattagataatgaggtttattctggtggtagaaggaagtcatttaagggatttgagcaggagact
gatgagatttgatttatgtcttgagaaggtctttgtgtctgcctcgtggagaacaggtagagaggcaagagtggagcagggagaccacctagatgtctgt
tgct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1546 chr4 126029356 126029662 RIP_Alu_chr4_126_01 0 + 238661 NA NA SINE Alu Yb8 ttaattctcttacactctagacttgtacatccacgagtgagcacccagttcataccaaggtgtccaagaagctctagtcagaaagcaagaggcatgtgtt
gtagtcttggggttgctgtttgaagctcgtggaagtttgtgtggaactggttgctgcagaagggcccgtaataaaagttgaggctataaagatttgatgt
ggcctacaaggttcctaatttgcaagggcctagccacatgaactgaaattactcaataattctaggcttctgcttccataccaccacccatcacacatcc
atatatttagctgggctgcttagacacatagtcatgcaaaacaattaggggcacaattagcacaaaagaagcttttgagtgaattatAAAAGTTGGTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGTTGGTCCTgcccagtggatgaattatagaaaggtgtctttttacatggaaccaacccaaatgcccatcaatgattgattgaataaagaa
aatgtgatacatatacaccatggaatactaggcagccataaaaagaatgagattatgtccttcgcagggacatggattaagctggaagccatcatcctca
gcaaactaacacaggaaatcacatgttctcactcataagtgggaattgaacaatgagaacacctggacacagggaggggagcaacacacactgggtccag
tcggggggtgaggggcaaggggagggagagcattaagacaaatagctaatgcatgtggggcttaaatcctagatgatgggttgataggtgcagcaaacca
ccatgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1548 chr4 126224978 126225295 RIP_Alu_chr4_126_02 0 + pAlu4-126260480|55248 GGTCACAAGCATTTCAGACAAGG GGAAATAGCTGGTGTGAGGAGTGG SINE Alu Ya4 ttgaacatccctaaactgaaaatccaaaattcaaaatgctccaaaatttaaacatttttgtgtggcaacttgatgtcacaagtggaaaattctacagcta
agtacataatgcaaactttgtttcttacatattattaaaaggtgtatatgaaatataaattaattttgtgttgagacttgggtctcatccccaagatatt
ttattaagtatatgccaatgttctaaaatctgaaatctgaattcttaaacacttctggtcacaagcatttcagacaaggaatactcaacctgtagtagac
atttatgtatgctaaaaaataactctacctgcttgcataaaataaaagtgccttagtaatgatactaatatattttaagaaataatttAAGAGATTTTTC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAGATTTTTCaagcgatgataatataaatggatacaactctggatgtcctttttaattcccataaaattacataatttaga
cttcccataagtacataatttaagatattgatccattttctactccactcctcacaccagctatttcccactgctaaacagaggattttcaagggattga
cattttgtttcatagacagccacttagagtaccccacattggtgctcctttatttattccttgtttcataacatcatcatcacatcatagcatatgtgta
tgtgcatgtccatgttgtttcacactctcaggttatctctgctgaaattgaaactaggataatggtcacacattgcctttaggaatcttggcagcaaact
aaggaagtgaacccgtc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1573 chr4 129564854 129564855 RIP_Alu_chr4_129_01 0 + 9011 NA NA SINE Alu Yb8 ggaaaagcttgaactaggtataaaatgctgtctaaatccttgatttaaaaaaaatttacttcgcttggcctgtttaaatactgtactttggccctgttct
cttgtcccacgtgtgcttaagtaaacaaaaatgtattaaccatttcagttgatataagtaggcagacaccttgtgttcacatttatgtaaccagaagcaa
aaactctgtaagctatgtatttacttggttggattaaatgtgtatatatacacagaagtacaaacaactaagaaataaattacataattcaacaccaaaa
atctcctatttcttatccctattccaatgaacaaactacaaaccaaagcacttctaaaatatcttccagctatcaagcactgaaatcaATATATACTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAA
AAAAAAAAATATATATATACTTCTtaaatcttatacacctacagattaaattaaggagaaaaccagcttacttccagactgccaaccctatgactttaag
gcttggaggtactctctccaataacaggtcactttaggtctctaatttaattatttattcttattgtagtcaccacttttttttaaagcttagtattaat
cagtgcacaaccaggatgcacaatgttgctcaactgtatgatataccaacaggttccatgagtctggggtttattaacataatccaaaatgtatgctaca
accacactgtaaaaaaagggcgtctaaatcaactaccctacacaaagttccctgaaaacaaagttctctcaaaacaaagttctaaaaatctttaacttgc
ataactggcaca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1600 chr4 133076804 133076805 RIP_Alu_chr4_133_03 0 - pAlu4-133112388 NA NA SINE Alu Ya5 acaggggtaaaaggtcacacacaatactgtagaacaatccaaaatattaatttattcctaaagtttttaaaatattagaataaatacagagcattttgtt
AAAACAATATGGTAAACCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAG
ACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGC
TGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTC
AAAAAAAAAAAAAAAAAAAAAAACAATATGGTAAACCTaaatgtaaaaaaaaattaaattgagttaggaatttcaaaaagacatttcatgtgccttttca
actttcaatttcgtatgaaagttgaaaaaacttgaaatcagtaagtgtgcatgtatatgtaaaacaaaattactgcatataaaaacttttttgaggcatc
tagaaaatatttagcagtgtgccataatttagaggcacttaaaaatgctttttagtgatacataaaaaattaattaatgacacagtctatgaaaaacaaa
tagagcagcttgaaataattcacatatttttcatgtaaaacttttaggagaagtccagtgatgtcacgatagctctacgatgttgatttattttgttgct
tttatatgcttattttata Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1603 chr4 133471658 133471964 RIP_Alu_chr4_133_01 0 - Ya5ACA1251 GGCAGATACTGTGAAATGCT AAGTGCTGGGATTACAGATG SINE Alu Ya5 agatgtcttcaatgaggttaaatgttaaattatttactcagcacttatttctttattataagggacatttactaggcgagttccccattctccctttaga
gatacttaatatctagctaattcattactatttcagtaagaaaaattagaaatatttccagagattactttgggaaccaattactatccacacagtgcat
aaaaccatactgaattggagatgttcactccttacaattcagaaatacactatgtgataacattcagaggcagatactgtgaaatgctttgaggcctaaa
gattttatttaagaatatcatcatatatcataaatgaccaaaaaaattggtgaaaatgaatcatctcacttcatatgattgattcttAAGAAAAAGATGG
GGACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAAAGATGGgctgggcatggtggctcacatctgtaatcccagcactttgggaggccgaggtgggtgaatcatgaggtcaggagttcgaga
ccagtctgaccaacatagtgaaaccccgtctctactaaaaatacaaaaaaattagcggggtgtggtggtatacacctgtaatcccagctactcgggaggc
tatggcaggaaaatcgtgtgaacctgggaggtggaggttgcagtgaaccgggatcatgccattgcactccagccagggcaacagtgtgagattctatctc
aaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaagatgacaccattctccctacttcatctgcctccccaccttactctcaccaaaatgaatagatgca
aataaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 489 170 NA intergenic
1607 chr4 133977495 133977787 RIP_Alu_chr4_133_02 0 - Yd6JXH34 GCCACCAAAATAAGCATTGTAAC AATTGCACTTCCCAATTTCACT SINE Alu Yd6 ctaatgttctttttttaagttttgtagttttattccttacaattatgtctttgatcaattctgagttactttgtgtgtgtgtgagtgtgtgtatgatgtt
ggatagggtctaaatgcaactgttttacatatgaaaatccagttatcccagcactatatgttggaagacaattacttccccatttaattgttttggcatt
ttttggcagtgctgaaagcaaagcttaaggagcaggacaagtcatttaggtgcctttgagaagaatactgaaaacgagaagctgcatgaagagggccacc
aaaataagcattgtaactttatatatccatagatgtatgtttttatttctgtactttcaattctatttaattgatctatgtctatcAAAATGCAAGTATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATGCA
AGTATCacactattttgattattgtatcttaccagtgaaattgggaagtgcaattccttctactttgttatttttcaagattgttttggttatttggagt
ctctattttcacgtgaattttagaatcagcttgttaattttacaaaaataggcaattgaaattttgatggagattacattgaatttgtagattaatttgg
agagtattacaatctaaagaacattttgtactcctattcataaacatggaatgtctttccatttacttagggtttctttaattttgttcaacaacgtttt
gcaatttttaatgtacaactctttcacctctttgattaaatttacttgtaagtattttattattttaatattattgtgaatagaataatttt UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
Candidate screening NA 60 461 155 NA intergenic
1608 chr4 134177218 134177528 RIP_Alu_chr4_134_02 0 + pAlu4-134212719 NA NA SINE Alu Yc1 taaatggtgtttagaaaactggatatctatataaaaaagaataaaattggacatttaccttataccatacacaaaaatcaacacaaaatggatcaaatgc
ttaaatataaagcctaaatttgtagaaatattaaaggaaaacagagaaaaacactacacaacactgatttggataactttttaaaatatgaacccataaa
cacaggcaacaaaagcaagaatagactaatgggattacatcaaattaaatagcttctgcacagcaaaagaaacaatcaattgagtgaaaagacaacctac
atcatacatctgacaaggggtcaatttccaaaatatataaataactcaaacaactgaataatgagaagacaaatgactcagtttaaaAATGGCTGGAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATGGCTGGAGGAaaagaatacatatttctcaaaagaaggcagtcaaatggtcaacagctataagacaaatgcttcatatcactaatcat
caaggaaatgtaaattataaccacaatgagatattaccacacacctgttagaatggcaattatggaaaggaaaagataaatgttggtaaggatgtggaga
aaagagagccattgtacattgctggtgggaatgtacagccattcccacatctgtttagccatgtatacaatcattgtggaaaacagtatgaagtttcctc
aaaacgttaaaaatcaaactactgtaaaaatctagcaactccacttctgggaagacatccaaagtatattaaatcagtatgtcataaagatatctgcact
tccatgttca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1611 chr4 134499222 134499517 RIP_Alu_chr4_134_03 0 - pAlu4-134534717 NA NA SINE Alu Ya5 aagaaactagacatactataaaattcatacgctctactctgttttccccacaacaatctttagtaaatttctaacccacttaataaagaatagtgatttg
aaagagcaccaagttagtaatctaaagatggcaattgtatttctcaaatccttgtgcataatggatttcactttataaagtcatgtcacatcagtagtcc
tggtaatatataccctgtaatgtttcatgtgtttgggtataagtagtctcttataatgtctgaaaatgtagaaaactgtggtggatacagaatgacaaac
aatatcaggagcagatgtacacaggagatttcagcaggctttcttgtccagcacatcattcattagatggcccaagatatttttatAAGAAATGACAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGCCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
ATGACAGAAGgacataaaagttacactgtttaaagtgtttctgagtcaaatgacattgatggtttaagttactgcaatatacagacacaaaaaaagagaa
atacattctcagaaaaaaacatttgcctcttaacacccaaagttcaatactgaggaatcattaagtttatcagagatttcttttaacattttaagtgtaa
agatcagttactactaatgcctaacttgcttccatgggaaaataaaagcagcattttttacctatctatatattatgaactttattaggctactcacatt
ttgctctattttagacttgatttcaaactcaaagaatagtttgtctgccttggagctcacagcagatcgtaaaccagaaaatatgctcaagaaaca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1612 chr4 134653165 134653468 RIP_Alu_chr4_134_01 0 - 20624 NA NA SINE Alu Yc1 catggatgggattttctcacaactgcatcagagactgaagctcttcctctctaatgtttcttctttatccctgtcttttcagaggtgtcaaacttgcatc
acatgtttaaaaaccctccctattactactcccactctcctttgactttaactgatttttattcccccaaatctctttcgcttccaacttagattgagta
tctgcttcccagtaaaacatggattcccactgtatatataacaaatgtcaatggtattcaaaatatagtcttttctgtttataaattattaaagaaaaat
ataaagaacatgcgtgaagtgaaaaagaaatgtattagatttctattgctgctataacaaattacaaaaaaacttaattgcttAAAAAATACAAATTTAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATACAAATTTATtctcttaaaattctaaaaatcaaaagtccaaaataagttttatgaggctaaaattgaggtgttggcaggcctgtttcctt
ttggaggctccagggaagaatccatttccttttcctgttcagcttctagtgggcacctgcattctttggttatagaccctgcttccatcttcaaagtaca
tcactccaatttctgcttctgccatcacattgcctttttctcttaactcaattttgaaggccatttgtgattacttttagagccaatttagataatcaag
cataatatactcatctaaagatcctttacttaatcacaactgcaaagttccttatgccatataaggtgtatgggattagaatgtaaacatgttggggaaa
agg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1634 chr4 137576463 137576464 RIP_Alu_chr4_137_01 0 - pAlu4-16634501 NA NA SINE Alu Yb7 gaacttccccaatctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgagaagagcaactccaagacacata
attgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttaccctcaaaggaaagcccatcagactaacag
cggatctctcggcagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagc
caaactaagcttcataagtgaaggagaaataaaatactttatagacaagcaaatgttgagagattttgtcaccaccaggcctgccctaaAAGAGCTCCTG
CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA
ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGC
AGTGAGCCGAGATTGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GAGCTCCTGaaggaagcgctaaacatggaaaggaacaaccggtaccagccgctgcaaaatcatgccaaaatgtaaagaccatcgagactaggaagaaact
gcatcaactaacaagcaaaatcaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaatataaatggactaaattctgc
aattaaaagacacagactggcaagttggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagacacacataggctc
aaaataaaaggatggaggaagatttaccaagccaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1640 chr4 138301444 138301737 RIP_Alu_chr4_138_01 0 - Ya5ACA1257 AAATACCAGTAACGGTGTTGAGC AATCTTGCTAAATTAAAGCAGAAAA SINE Alu Ya5 tagtagtcagatatagtgttttaattaaacatcagatattcgttgaatagtttccacaagctccgttttgttttgataaagcatggacattgaattagga
aataagtttgaattttattcttgctcctcgctcagtaaccaatttgggggaagcttcttagaagtcttttagattcagtctttttttttctttttggaat
gtaaaacatcggaacatctaattcataggatttttttttataaataaatgaaataaattgtgtaaaataccagtaacggtgttgagcttaagaaaatttt
tattctgaactttgggaggccgaggtgggtggatcacgaggtcaggagatccagaccatcctggctaacacggtgaaactctgtctgtattAAAAAAATA
CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGCTTGCAGTGTGAACCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCATTAAAAAAAAAAAA
AAgttttttctgctttaatttagcaagatttagaaggatattaatattaataatttatttgacttttacacaaattgtaggaaactttgtattgtaatta
aaatccacaagagaaataactcattgattagtaccaagaaattcatttgggacttgtcttttcctgaatgacttaaatgtgttcatttgattggcaccat
gactaacccaaaatcaagagtgacagcaggccaatagggagaaacaagatggcaagtgcctgcacagaatggaagctgcagacccggatgtaaactagta
agaataaactagactaatgagttgctgaagtctgactgtgacctggtgtgagagtgagaagcccataacggctagagatacagggagaggttc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 466 155 NA intergenic
1642 chr4 138656610 138656611 RIP_Alu_chr4_138_02 0 + pAlu4-138692211 NA NA SINE Alu Ye5 tgttggttgagcagaagaatcaactaaactaagtaccttctggtataaaaagattctaaaatgtataattacacaaacataatacaagtttgtttctttt
tcatgtcaatagtaatgggtgataccaccctccatgcacttattcaggaccttaagttaacagaagttctgtgattttttaacacatggctgtaaatggg
tttatcttcattccaaagggtagaaaagcattctgtactctagcagtcaagaatatgctactctcaaatctctgactatggggagtaaaattgactatgg
tctcagctgctgtgctttgaaaatcaacactgcaattatgccacacttcccacaggctgctcccaactggtgactgggcatgtcAAGAATAATGTTACCA
GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATGGCGT
GAACCCCAGGGGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AATAATGTTACCAaaatgccaagggtttggtctaggtcctgtggctcatcacacataaagccaatcaaaagagacaatgagtattgccacggaagaaggc
tttatttggatgctgtagccaaggagttgagaggtaagtctcaattctatctcccccactgacttaaattaggggttcatatagcagtgaagaaatctaa
cgatatgtggaaaaataggaattagggagaggtaaggaagcggagttggtcaacaggcagcaaatggtcagtgaggcagtcataatggacgaggggtctg
gtgtttcattgtccagatgtagtgatctggtaaatttcagttccttggtactatctgggaggcctgatgatcaatttcctgagaaaggaactttgat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1670 chr4 142284545 142284846 RIP_Alu_chr4_142_01 0 + Ya5ACA1259 TTTTGGAATACAGCCCATTTG GCACATTCCAAGATTAAAGTGG SINE Alu Ya5 caagtattgaggaattccatattcggtgttaagcagaggagaaggagcctacagatgagtcagaaaagatatacccaagagataggaggaaaaaccaggc
aggaccaatgctacaattaggcctgctaagagagaaagcattgttttcagggaccagaactgtaggataagtaagcttccttaaggtggtatgagggtct
atgcactgcacaagtacttagaatatttttcctgaattgcagataaaacctatgagaaatgtggctacaacaaattgagtgttaaccaacccatcttaca
aattgatttttggaatacagcccatttgtaatttgagtatatcatgtactatgacagaggaacacgttttactttagttagataagaaATATTTTAAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA
CATATTTTAAAAGaatggaactatttttttctaataccactttaatcttggaatgtgctataatttgaatttctatttttaaaagctagaatgaagagta
ggaaggaaattatatatatacacacatatatatacacatatatatgtgtatgtatatatatacatacatatatacgtatatatatacatacatatatacg
tatatatatacacacacacacacatttctccatttcttgggcatttttcttttgtctttgaccactttagctgtcagttctgtaatctcctataaactaa
ttgaactcttccttctgtgtgacagcagtaaaattgatcaacaagatccctgggaaagtgacatctggcaacaaggaacaatggaagggaatacagctaa
t UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 451 138 NA intron
1690 chr4 144930906 144931219 RIP_Alu_chr4_144_01 0 - Yb9NBC10 GTTTTCCTGGTGTGCCCTAAATA TTTACCTAACTCACAAGACCCAAAG SINE Alu Yb9 acctcaggagttcaagactagcctggccaacatggcaaaaccccatctctataaaaaatacaaaaattagctgggcatggaggcatgcaactgtaatccc
agctactcagaggctgaggcaggagaatggtttaagcccaagaggtggaggtggcagtgagctgagatcgcactgtactccagcctgagcaacagagcca
gactctgtctgaagaaaacagaaagaggaaaagcaggaaagcatgcagtcttcacctcaatttacctaactcacaagacccaaagggactgaatgggatt
ttttttctatatttcatttcatttgccactttcatttctattgctcgttaaggcttttaaaactctttatgtattactctttttttAAGAAAGGAAAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAAGGAAAAAGaccatttgaatgaatagttatttttaaatttatatatttagggcacaccaggaaaaccaaatgaacagggaag
aaactggcagcgtgtaacattaagcacaaaatggtaagatgttatacacagctagggacttgtgcagaaatacaatacacagaaaaatcttttgaactat
tagttcttcagatattacaaaaaatgcagctccaagaatgagtccattgaaaagaaaataatagtaatgctgaattaaagtacactattccattcagcac
ataactgattattttatatgaaagtgacctatgtcatctttacttccttctctccttccatctgttaagaagtataaatgacttaagggtgggctttatt
attttctcacagg UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 60 524 197 NA intron
1712 chr4 147816647 147816959 RIP_Alu_chr4_147_01 0 - pAlu4-147925127 NA NA SINE Alu Y ttatctcatgtcctgagctccctctgtgaaatgtttagtcaactgcctgacctccacctggatttgtaataggcaccttaaagttgtctccagcgaattg
gattttgctcactaaatctgctttcccatctcttctatctttgtaaatgatactaactgtgatggttaatactgagtgtcaacttgattggattgaagga
tgcaaaatattgatcctgagtgtgtctgtgaagtttgtcctcactggaatagacattctgaatgtgggtttgcctaccctgcacacaatgcttctgccaa
gactaccatccatggactcatggaatgctttatccatcgtcatggtattccacacagcattgcctctgaccaaggcactcactttatggctaAAGAAGTG
TGGCAGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAA
CATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAAGAGAAT
GGCGTGAACCCAGCAGGTGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGCGACAGAGCAAGACTCCATCTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAGTGccgtcatggaattcactgaccttaccatgttccccatcatcctgaagcagctgaattgatagaacagtggaatggccttt
tgaagtcacaattacaatgccaactaggtgacaatactttgcagggctgggtcaaagttctccagaaggccgatgctctgaatcagcatccaatatatgg
tactatttctcccttagacaggattcatgggtccaggaatcaaggggtggaaatggaagtggcaccactgaccatcaaccctcatgatccactagcaaat
tttttgcttcctgttcctgcaacattatgttctgctggcctagaagtcttagttccagagggaggaacgctgccaccaggagacacaacaacaattccac
taaactggaaat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1718 chr4 148613652 148613653 RIP_Alu_chr4_148_01 0 - Ya5-MLS57 GGTAAACATAGGCTTCTGATTCAAG TAGTTTGGCCTGAAGGAAAAGTG SINE Alu Ya5 gcaaagatttctttctgaaagatggtagaaacaatttttcctttgatgttgtctctcagcattctgaatttgatttgtgaaggtattttgtgcagcacat
caatctttgctaaaattcttcaagtttctctttgcaaaaaccagcagaaatttaccagagtaaattatgaaacattgctgcagttgactccaacaaacca
gagttccacaacaaaatgaatgtacaatacaaaaaataaaatttagtgggccttgttattgttttacatatagtttggcctgaaggaaaagtgaaactaa
gttataaattaagttgtatatcatctaatagaatgaggttttgaagtagtaatagaattttgaaactctctgaattcttgtctaaaacAAAAATCATCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATCATCCCttctttttgctgtattctcttgaatcagaagcctatgtttaccagctgctctaagtcactctttcctttattgcagtgt
ttgacactataataccttaaagtgggggttgcttatcttgggagtggtggtaaatgttgagtgaatgtgggaaggaattatagatgtttaacaactgttt
gcaaaggttccagggttcttgggagggaacaggaaatattaattttatactagctcccaaagccaaaaggaagaagaaaaaaaagaagcttcttaatctg
tttagattacctctaaggagatgagtcatgagtgaaattcaggattaatatacaagaagagctcctaagagaccgtctagactacaggccatctttctct
ttcacagaa Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
1733 chr4 150518661 150518986 RIP_Alu_chr4_150_01 0 + 13443|pAlu4-150627143 NA NA SINE Alu Yb8 tttcattgataacatatcaatgcatctaatacattggcaaacttttatttagtaaaaaatctttaaagagcaaaaagcaaattttgtgaagaatattgcc
atgattataaacagatgaagaaacacagatgttaaaataacagtgttgatgcagatgtttcagagaaacaatatgtagtcaataattcctaaccaaaggc
ctgtaatggataacaggcctaatatattcacgtagggggacactaaactcaggttagacaaaaaccgctttccaggaaagggttatctaagattggatga
ctgacttcataaagccttctgctttgctttattaagtgtcttcatatcttttgcttgtaatttccctataatcggctatggttAAAACTGGGCTGCTCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGGGCTGCTCTAactcaaaatatcaaggccttgctgattttcttgtcttaattgtttcctgtgacacagc
catcaagtaaagtcaaagcatcatagtattgttgccttctagaccaatactatccaacagtaatataaagcagtcctaaagagcaagccacatatgtaat
ctaaaatttcctaatatattttgaaaaaggaaaaggaacagaagaaattaattttaataatgtattttcatttaactcaatgtccaaaatattacaattt
taatatataattttttatagagatggggtctagctctgtcacccaggctgaagtgcagtgacatggtaatgagtcactgcaatctcaaacttttaagctc
aagcaatcctcctgcctaagcctcc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1739 chr4 151308645 151308954 RIP_Alu_chr4_151_01 0 + pAlu4-151417127|9448 NA NA SINE Alu Y tcttgaattgtagctctcataattcccacatattgcaggagggacccagtgggaagtaattgaatcatggaggctttttccccaatactgttttcgtggt
tgtgaataagtctcatgagatctgatggttttataaggggtttacccttttgcttggctctcatttctctcttgtctgccaccacgtaagatgtgccttt
caccttccgccaagattgtgaggcctccacagacatgtggaaatgtgagttcattaaacctctttttctttgtaaattacccagtcttgggtaggtcttt
atcagcagtgtgaaaacagactaatacagctttaaaataaacaaagtgtttctatagcctggggaaagaggaaatggtctacgttttTAAAGTATTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACAAATAAAGTATTTTTAaatgttggtttgttatttcttttgtttatgcccagtactcagaatggcttttttattttattttattttattttattt
tatttttttagcgatggggtctctctatgttgcccagaatagagtacagtggctattcacaggtaggatcagagcatactacagcctgaaactcctgggc
tcaagcagtcctgctgtctcagcctcccagtagctaagactacgggagccaggtcactgtgcctggctcagaatgacataattttagaaggaagtgaact
taacatttattttcttattttctccatttttccccagctctgtaacacttactttcatcacaattagaatgatttgctctgccttttctgtaggcagaaa
tttaaatct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1739 chr4 151369244 151369245 RIP_Alu_chr4_151_03 0 + pAlu4-151477829 NA NA SINE Alu Sp ataatgataaaaacaaaacaaaacaaaacaaaaaaacgcacaatgaaaattcccatagtgagctcctgtagattttgggaggccgaggcaggcggatcac
ctgaggttgggagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacgactgtaat
cccagctactcgggaggctgaggcaggagaatctcttgaacctgggaggcagaggttgtggtgatccaagatcgcgccattacactccactccagcctgg
gcaacaagatcaaaactccatctcaaaataatgataaaaacaaaacaaaacaaaacAAAAAAACGCACAATGAAAATTCCCATAGTGAGCTCCTGTAGAT
TTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAAATTAG
CTGAGCGTGGTGGCGCACGACTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAACCTGGGAGGCAGAGGTTGTGGTGATCCAAGATC
GCGCCATTACACTCCACTCCAGCCTGGGCAACAAGATCAAAACTCCATCTCAAAATAATGATAAAAACAAAACAAAACAAAACAAAAAAACGCACAATGA
AAATTCCCATAGTGAGCTCCTGTAGATtttgggatattcttggccccatgtatgaggagcaaaaaaaccagatcacagatctgatctgctggttccatcc
tacccaggagattagatacgatttcttcctcagtgggtaagctacaaagctttttggttactgggtgggttttcgtttttacatttagctaatttatttg
gccttaagttaaactcctcccagatttcaatgctaaaacatggatttgtggacatacctatttcttcatagatattcgtagggtcaaagcagattttgta
cccccttctcggtagaaggtatcacagaccatacaactggatgtgactttaggagatgatttggttcagtcacttgcctgcag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1743 chr4 151831554 151831856 RIP_Alu_chr4_151_02 0 + pAlu4-151940026 NA NA SINE Alu Ya1 gctcaccatcactggccatcagggaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaa
caggtgttggagaggatgtggagaaacaggaacacttttacactgttggtgggagtgtgaactagttcaaccactgtggaagacagggtggtgattcctc
aaggatctagaactagaaataccatttgacccagccatcccattactgggtatataaccaaaggattataaatcatgctgatataaagacacatgcacac
gtatgtttactgcggcactactcacaatagtaaagacttggaaccaacccaaatgtccatcaatgatagactggattaaaaaAATGTGGCAGCTGGGCAT
GGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGATAGCACGGTGAAACCCCG
TCTCTACTAAAAATACAAAAAAATAGCCTGGCATGGTGGCAGGCGCCTGTAGTCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGA
AACGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGGCTCTGTCTCAAAAAAAAAAAGAAAAAAAGAAAAAAAAG
AAAATGTGGCAtatggaatattatgcagtcataaaaaaggatgagttcatgtcatttgtagggacatggatgaagctggaaaccatcattctcagcaaac
tatcgcaaggacagaaaaccaaacactgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacagggaggggaacatcacacacca
gggcctgtcgtggggtggggggaagggagagggatagcattaggagatatacctaatgtaaatgacgagttactgggtgcagcacaccaacatggcacat
gtgtacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaagtacaaaaagaaaaaaaaaataacactccctcacctggca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1785 chr4 157359649 157359948 RIP_Alu_chr4_157_01 0 - pAlu4-157468140 NA NA SINE Alu Ye5 gatatactctcaaataagcaacaatatagaattctttactaacagacagccccacgtgctatattaaaagagatttcttccggtagaaataaaaggacac
tagaaacagacttaaagacacatgaacaaataaataatattggcaaaggtagtaaaaataaatagcaacaataataatacccatattgtaagtatactac
atgaaatttgttatcagttttttttactttataactcttttctatctaaacaaaagacaacttcataaggcaattatcataaaactgtgttgatggactt
atataaacgtataatttatgtgacaatactagcacagtgaggggaaacaaatgaagttatatttgagcaaagtattttatactattaaAACTAAATAGGT
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCC
TGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACTAAATAGGTattaatctagattagatcactttaaattaagatgtaaattataatccccagggaaaccactaaaagggtaactcaaaagaatacagtaa
aagaaaaacaagaagattataataatacataagaaaatatcaaattaatacaaaaagtgttataataaaaaagggaaaaatgacacaaggcatacagaaa
gcaaaatgcaactttaatccgaacttatgagtaattatatgaaccataactgaataaaacaatctaattgaaagacaggcactggaagaatggttaaaat
aaaaccgtagctcaactatatattttcaacaaaagacacatatttaattaaaaaaaaacacaaataacttgaaaataaaaggatggaataaagatatgc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1813 chr4 160986080 160986081 RIP_Alu_chr4_160_01 0 + 238918 NA NA SINE Alu Yc1 aactgatcatgtgcagtgcagcaacccagtttaaattggcctacttcacactgatagtgtcactatgggaactatcctcacagacccactagagacctgg
ggtcactatgggaactatcctcacagacccactagagatctgggggcttttcttctagtgactaatatccctcatctgatattttgctagatggaattct
aaatagggaacttctttacatcaggctaagcaggtccaatgtctaaggcagaaactagaacacataatatgtcccaaatatttacggaacaaacactgat
ctatcaaagtgctttcagaatttcaaaatacatggattttagaaaataatttttttattgttaaagatttatgttcctgtccacttaagAAAAAATTAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATTAGTagaggtaagtatgcattgccaagttaatctttggtaatgttagggagataggttttaagcatttgaacacacaaaattt
gtttctatgtttttttcattttgttccacaaggagttaatgatggtaggctgggaggcttgtgtcttccttttagtggcgcacagattacgtagaaatgt
gctattcaaagtataacctgtggacccacatttgcatctccacaaatggcttgttacagtctgcagaaatataagtagagagacttataagaaccagtga
atagaaacattttatagcaatttgatattgtcaaaacaccctactattcttgtagacccatttttatgaacgtgatatagaccaacaatatcaatcaata
taaaaatgaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1833 chr4 163590019 163590319 RIP_Alu_chr4_163_01 0 + 53704 NA NA SINE Alu Ya5 ataattgctattatacagtttagaaaacttttaaagagaaaatattgaagctagagttgagtagataaagtttttcaaagttctgagcaaatttggcaaa
ttggaattttgaattggccaaagtatcattcagctacaagaaatgggctgaaagcatgcttggacaaatagtatttttgttcaaataacttctaaagaat
gttctagaagaagaaaactgaacacagataatatgtgagataataataatgactaaattactcaaaaaaattggaattcaatactggaaaaccctaacat
ttgaatggcaatgagtgatatcatttaaatgattctaaggtatatatgttactcagatggaagaaaaaaattgtgattaacttttaagtatAGAAATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAATCTTatatatattttaagttgtaaaatctaacagaaagataatgagtatcttccagaaaggtaaatcaggtaaacagaaagcacaaaagaaatct
aagtataacaagagacaaactatattagaaatggtctaaatgtctgtcttaatgatcaaaattattacaattgaataaattaaaaaagagagagaaatag
caacgcattttactaggtgcactcaatcaatataaagaagactggccagggacggtggctcatgcctgtaatcctagcactttgggaggccgaggtgggt
ggatcaagagttcagaagattgagaccatcctggccaacatggtgaaaacccgtctctaccagaaatacaaaaattagctgagtgtggtggcaggcgcct
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1844 chr4 165115368 165115369 RIP_Alu_chr4_165_01 0 + pAlu4-165223948 NA NA SINE Alu Yd8 cagagtaactggagaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaattttaataattgctcgtatataat
acaggactgaattagagaaatagaaatgcattttttgtgaaaattaaaaacatcatatgtataaatataaggcaattatcatatttgtataatcataaga
aagttaagtgcctaacataaataaggacacaccactaatttttggtggattcagaatcannnnnnnnnnnnnnnnnnnntgccttggcctcccaagtgct
ggggattacaggcgtgagccaccgcgcccggctaatttatttttttgatacacatttactctacgttatatttcagggcttgttaaaagaATGCCTCCTA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GTGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCAGCCTGGGCGACAAAACGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGGATGCCTCCTAgtctctctgctgtgaggaagaaagttctacctttagaataaagtagacaaaataaggaaacagagggtccat
ctggccaaagctgagtaatagaagctgtagtcatcagcagaggtaagtgtgacccccaataaacagtgataccaagtgcgccgccattggcagcaaagag
cactgagtctgcttgatgacaggactacaatagaagaattattcctgatctcatgtgagttagcccattagccccctggaagcctcacagagtaactgga
gaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaattttaataattgctcgtatataatacaggactgaatt
agagaaatagaaatgcat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1861 chr4 167252893 167253194 RIP_Alu_chr4_167_01 0 - Ya5ACA1274 AAGCCAGATAACCTTCTCGGT GCTGAGATCAAGAGGCCAAC SINE Alu Ya5 acataagcaggtactgccacggtattttggcaatggagatttggagctggcaatgagaatcccatcctgggttgttggagcttcagcaaaaaatagcctc
tgggatataatataagtataattattaaatctttctcttgtactgatggtaaattgtaaaaataaatgctggtgttatatatccagagtttgtgcaatac
agggaaaatagtaactctaaggatagtaaattgggtagctaatgctaaactccattaatgcttgttaaatgttaacaaaagattggtcacaattaatgaa
tcattaaaagctatgagtgaaagccagataaccttctcggtaatatacaaaaatactgtcatctcctacagcttgatagcagagaaaactAAAGATGAGG
CCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTATGAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAGATGAGGtccaggacttaatcctaagagttacagagtgcagttggcctcttgatctcagcaggtcagctatgccagggtacagttctactttgaaa
cccagacacatgggatgaaaaaatataatcttgaaactccagacttctctgatcctattaagaactaacgctggttgggcacagtggctcatgcctgtaa
tcccagcactttgggaggccgaggcaggtggatcacctgagatcaggagtttgaaaccagcctgaccaatatggtgaaaccccatctctattaaaaatac
aaaaattagctgggcatggtggctcacacctgtatttccagttgcttggaaggctgagacaagagaattacttgtacctgggaggtgcagattgcagtga
g UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 444 133 NA intron
1862 chr4 167465708 167466034 RIP_Alu_chr4_167_02 0 - pAlu4-167574198|8359 NA NA SINE Alu Yb8 attttcaccaagacagagacaagatcccaggttaaagaaaaataaaagcagaaagagggtagcataggggaagaggcaaaatgtagctctagtttatgtt
tctactgtgtagctcagagcaatgaggcatagccatactgttgactcctgtactacacatacgcctaaccacacccataaacacactgctaaccagtaga
aaagactgtattattttcacttggtctacaaaaaatgaaagaggcatttctatggagaattttcctttatgaatgttggatatgtataccagaataaaga
caaaaaaaagattgatttctttagatcaatacaatataatctttatatttttaagtgtacaacaagtgaaaaagaataggatgtAGAAAAGGTTGGAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGGTTGGAAGAtaaacatttgggggcaagaatctagaatatggtaaataagagtaagagaaaaaaattg
gaaaatttcagaacaaaataaaaatgaaaaataacaggaaaatgtatacttcttggtcttttacacagaaaatgaatgtaatgttacttttaagactgaa
tatttaacttctaaagaattaatgcaaatttggataaatggggatatttacctccatgcttaatgctgcttttatttttatatcattccttaaacttgaa
attcttttattctacaatttcatttatacactcctttcctggtttgtcttcattttgaaatacacctcagttgtattttgggggttcatcctttatcatc
ctcctttaaatattggagttctctaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1864 chr4 167696404 167696405 RIP_Alu_chr4_167_04 0 - pAlu4-167804973 NA NA SINE Alu Ya5 gatataatagattttataaaaagtttcatccaacagctgcagaatacactcttctcctcagtacataaattattctcaaggataaatgacatgttaggca
acaaaacaagtcctgaaatactcaaaaagtttgaaataatatcagtcatattctcgatcataagggaatacaattaaaaatgagtaaaaataggaatttt
gggaattatacaaatacatggaagttaaataatatgctcctgaagaaacactggatcaaagaagaaattaagaaaaaaatttaaaaattacttgaatcaa
atgataatagaaacacaacatacaaaaacctataggatacagtgaaagcagtactaagaggagagtttacagctataaactcctgcattgAAAAAGTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAAAAagtagaaaaatgtcaggtaaacaacctaataataccttttaaagaactgaaaaagcaacagcaagccaaacctca
aattagtagaagaaagacataataaagatcagagcagaaataaatgaaatggagatgaagaaaacaatataaagttcactgaaacataaagttgtcttaa
aataaacaatttaaaaaatcaacaaatctttggccagactaatgaagaaaaaaagagagaagaccccaaaacttacatcagggatgaaaaaggagttatt
acaaccaatacaacagaaattcaaaggatccctagaggctactatgagcaactatgtatcaataaactggaaagcctagaatacatggacacattcttag
acacatacaacttag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1864 chr4 167769648 167769744 RIP_Alu_chr4_167_03 0 - 52971 NA NA SINE Alu Ya1 agaatagagagaagtagatgaagacacaataatctcttttctaggcatcctaaatggattgtctttgcttctagtttagacttatgagtaggctgctgct
taataccctgcaggagtttcaggaaacccaacatgcctcaaattacactttcttcatttacttgctgacccttgaaataattttaacaccggtcattgat
tttagttctataattaaaatgtaaaaaattaaatgataatagcctagccatagaagaaaaagcacagtgatagtaaagactcttaagtgccttacatctt
tcttgaaaattaatcctatctgagtagaaagaaaaagataatgtactaagattatatgagggaaatacaggtacatagaaacatagAAAGATAAGGTTCA
CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAG
ATAAGGTTCAgggtagagaagacaaaaatcatgtatttcatatcaagtagatttatttaacattagtaaatatatacagaaagatatataatataatatg
aattcctgggttgccttagaatagaataaatatatacagaaagatatataacataatataaattcctcggttgccttagactaaattcctggttgcctta
gaaaattggaatcctttcttgtgccttaaaaagaaaaaaaaaagcctgaaatcaacacagaagagccaataaaaacacatataacttactcctttagcat
aattggaaaacagagtaccatgaacacaaatttgtttgtaaatagagaaataaacatcaagctgatatcacatgactgttcagagagggaaatgga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1891 chr4 171209328 171209329 RIP_Alu_chr4_171_01 0 + 4651|pAlu4-171419045 NA NA SINE Alu Ya5 tgtttttgcaaagctctggaggtaagtattgctttacattttaaaagggttgcttaaaaattttttttaaaaaaaagctaagaagattgggcagcagaga
cttcgtgtggtctgcaaaactatttactatccagtcctttacagaaaaatgtgctaatccctgggctaaaacaatggtctccaaagtgtggtatgtacat
tccaaagattgtgcaagataattcagtaggttcttaattatttattcttttgcattcatttattgcttatgttttataatgcacataatttttagtatag
taatagatacatataatttataaattaacatatacatacatgttttgggaataatgctcagaaattttttaataatgcactttatgataaAAAAATTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATTTTGg
ttaaaatacaaaatttatgagggcaagcgccatattctctccttccatattcccaccatctaatacacactcaatgtaatgctttttgaataaatgatag
cagtagacttaaacatttattgagcacatattaactaagctctcggaatgtaatatcttctttaatgattagagccaccctatgagttagatcttgttac
ttttattttacaaacgaggaaactgaggcccagagaagtcaaacaacttcctgaagctctcacattactagtaaaaactggaagctgagtctgatgccag
tctgactccaaagccagtgtttttaaccatgaatgacctgtctctaatttcattctttttttttactctttatgtgtatcagaatgcaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1899 chr4 172263600 172263904 RIP_Alu_chr4_172_01 0 + 7126 NA NA SINE Alu Yg6 tacaacctaaattaatgtaaaatttcatttttccttgaagtgattacacaatggtatgttggcaaatcctaaataatcagatctctagggttttactttt
gcttaaaagctctgttctatagcatttcctgattttcatgttgtaaatattcccacaagggctgatttagagctatcaatgtaacatcactaaatatgca
atgggaaagccagtgggaaccagctttaccacaccactataacataaggtttatctttcatccttctggtaattatcatcttgaagcaactttacttgtc
agttattaatatttggttctggggaaaggtaagtagagcgtcacacaataagaatcattaatactaacccagaatatctcatctcAAAAACTGACGTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAAACCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTACAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAACTGACGTGCAgagtatatctgcaaaatattttaatgagatgatgtgaatatttctaataattttataattagaattgtttgtttttgaaac
taatgcaaatacataatccaatgcagagtttagggccagatattgtgtattaaattattccaataattttttataaaatataagaacaaattatattcat
cacaaccacagtcaaatactattggaaatgtgattttcctgaatctagtattcctgctttaaaaatctctttggtccagtgataatctctgttacgcact
gtaactaatacttaaaacatactttcacaatgatttcaaatccctaaaatagaaacaatagatgtatttgccaataaagtaaactgtttccagtttgtca
atat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1921 chr4 175161437 175161438 RIP_Alu_chr4_175_02 0 + pAlu4-175371158 NA NA SINE Alu Ya8 gttagtgacagtcctgtccatcactgtttctgatattctgaaatttgtgatggcttagaaatgaaactaaaagcatttaaaaattttgagtagaaagtga
aattttcagacttaagggactttgaagtgaaaaaaaagttgaggcatagagctttaagagtcaatttccatcttcgttagcttttttttctttacttaaa
aatatcatcttaaaaaaaaaacactgagccctttatcacaatttttctccatactttcctcttctggtttatggacttctgcataggaattagtaaaatt
tgtaggcaaaactttagtttcatatgggacccatttaattgtgtaccttaaatccattggaaagctagaataagctttcatcttaagaaaGTTCTTTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGGTTCTTTCTGaagataatgggaggcttctgtttatggaccaacaatttgaggaatgtagtgatcacatgtatacaaataaatggctcaaaa
aaggtcctcaataaatcataattatcacttattattgagtctagaatgataaaagaattaacaaaatatgttttataggcatttatttaatttaaataat
gctttatctaaaagtctgaaattttgaatgatataagggaaattaaaataattgccttctattttcaattaactaccactataaccaaaccataaaaatg
tttatttttttgaaatacgaattttggtaacatcctgtatgtctcaatgtagcctattgattaaataaattatataggtatttatatcatataaagtatg
ttgtcatta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1927 chr4 175909035 175909036 RIP_Alu_chr4_175_01 0 - pAlu4-176118742 NA NA SINE Alu Yc1 agagaattctgtacaaacagactttgttaaaataattcttatctttcattagcctccccacataatttagttacttttccagaattgctgctctttgtta
aacctgataatatggtttagatgtttttttccactccaagtctcatgatgtaatgtgatcctcagtgtgggaggtggggtttggtgggaggtgtttgagt
ggatccctcatgaatggtgatatgggttggctgtgtctacccccagatctcatcttgaattgtagctcccataattcccttgtgttgtggaagggaccaa
gtgggagatatttgaatcatgggggcagtttctcccatactgttctcatggtattgaataagtctcacaagatctgatggttttatAAGGGGAAACTCCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATAAAAAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGGGAAACTCCTttctcttggctctcattctcttctgctgtctgccaccatgtgagatgtgcctttcaccttctgtcatgat
agtaaggcctcaccagccatgtggaactgtgagtccattaaacctctttcttttgtaaaatgcccagtcttgggtatgtctttatcagcagtgtgaaaac
ggactggtaatagactggtaatgtacagtaatggactggtaccagtagagtggggcactgctgaaaagataccaaaaaatgtggaattgactttgaaacg
gggtaataggcaggggttggaacagtctggagggctcataagaagataggaaaatgtgggaaagtttggaatttcctagagacatgttgaatagcttcac
ccaaaatgctgataat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1944 chr4 178244481 178244783 RIP_Alu_chr4_178_03 0 + pAlu4-178453682|Ya5-MLS05 TAACTGGCATACGGATTCTTTCTC ACTACTTATACACACAAGAGAGCACATG SINE Alu Ya5 ccttttttgtcccctttagtggcaacaatggttatttttgtttcctttaccctcaacaaggttattacttcatatgagctggggtaactgtaactctaaa
gtgtaatgtatgttataccagtacttacatttggcaaaatagaatccttaggaacataattcactctcaattaaactttcaacatataccacgaaactaa
gaagtcaaataaaattacgcatcttagcacctgcttagatgtttgctagaaaaatttagtttagatttgggagacaggtaaagtcagtcttgtctttaat
aatgaaatactcaatttgaaactggagatttagctcctggtatttgcagcttactatatggtaactggcatacggattctttctctAAAGAACAGGATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAACAGGATTAacagtgaaggtctctgataattttgtggatagcaagtctcctcttattgtcatcatgttactaaagtaaccaagaaggatcagc
gaacatagtcttcctaagggtagaaaaggagttctatttttttatcaaaagaaacttggtacatctttaatgattgaaatatttattgattccaagaaac
tataaatgctcatttaaagctcaccgcaaatagttatttctaccccacatgtgctctcttgtgtgtataagtagtcacacacacaggcacgcagacacac
tcatggattttaactattagaatacaatgcctacaggactttctggtcagaccaaagtatgaaatgataaggatgtttctgaaaatttgaaattttacta
tt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization|Genome comparison NA 0 0 0 NA intergenic
1947 chr4 178531986 178532305 RIP_Alu_chr4_178_01 0 - pAlu4-178741188|238465 NA NA SINE Alu Yb8 ctttacctgttgcagaaggcaggattatagagttaagagaactaggactgagtatcctagctgatgaagcactgcatgttatatcttttcttttcttgga
aattcactatactcattaacatttcaagactctaataagtcctgcagtgaaaaaaaaatcaatactttctatcaagattttccaggcatatttgacacag
aatacatttttgcgtaccatctattaatatttaggaaataatttaatagaatataacatctttggataatatattctgccactatagaaagttatatttt
taaaaatttgttttaaatattatgagaatatcttgaatctttacaattctagtgaatatagtcattaaacatagatattgtataacatttAAGAATACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAATACTTatgtggtcttgtccttaagagatctacaccagaattaagattagacttagatatctcaaattcaatcgacc
atttaagttgaacttcagttctttgatttacttctctagattaaatcctttaaaggctgtttcttcctcgatattatttgggaatataaacccaatctta
taagaccagaaaaaaatatcaagtagttatttctcctttaatcacaaaacccttgcaggagataaaagattagcctcagactttctgacctataatgtta
acatattttaaaagaccatcatttcaaatgctctagtttcttttttgagcaaactgtgaaaaaacaaaaaactcttctagtatctgtcttctgtggtctt
cactacatatctcctgaat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1949 chr4 178889406 178889712 RIP_Alu_chr4_178_02 0 + Yb8AC1217 GGCTATTAAAGCATACACTAGGGG TCAGCTGCCAGGTATACATCA SINE Alu Yb8 ctatttctatattttcaaaaaagttaatttgttaatcaaaagattgaacttgttagttactaaacagattgtctctaattgttagacaaagaatatttat
gtgagcaattgacttttagcaatagcaccataaagataaaggcatattaatttaaaccttaatttttatgggtaaggaaaatgatccatagaaattaaat
gaacattgaaagatgatatgacaaaattgttcttttaacctttttgaaatgttcactttttctaaaatgtgcacttttgtacacattattcatctttagc
atctttagtactggatcagtagaaatagtattttttaaattttacatgagtggctattaaagcatacactaggggtctttaaattatAAAACCTAAACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAACCTAAACAAatgattaatctctcctaacactaaaatattttaaaattgattactacagtgctggtaatgatgtatacctggcagctgacc
gtcaaatcttatgaaggattaaaacataaagtttgcattaaaggtaagatttctatgtatcttataactgtttcatctcagaaaacaatataacaacttc
cttttctaacaaccagtatttcttttttcacaaacataaatctgtgagctattagcaaacactgaattgacattccattgaaaagatacacactgaaatt
tacagtgtaaaatacattttatgtcctctttatggaaaacacaaacacatacctacacatgcacacatacacacactcacactcacatggaactctatca
acatag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 447 128 NA promoter
1963 chr4 180632118 180632119 RIP_Alu_chr4_180_01 0 - pAlu4-180841405 NA NA SINE Alu Yi6 aacagaatagtctatatggattaatgaacaattaatttatttgtactactttctacttattaaaagatggacacaataattctgcagtattagaaaattt
cccaagttctttcttctcacttacattgctggacttctacttatacatattttcttcactgcataaaaaccttgtaaagttcaccaaaggctgtagaaat
tcctctgcagtgcagacaatgcaaacaaaatccacataaagattcccactacagggtaaactctcaaaaatattttctggcactacttgacagcattgga
aacaccaggccacttttgaatgcaataaatagactctaacatgcaacgcatatacctggacacattctggagacatttaggcaatAAGAAATTTGATTTA
GGCTGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAGAAATTTGATTTAatggagtaaaaggcagaagaggtcaatggaactagctgaccaatattaatcacagacttgttaaaactgttatcaagaaacaaa
tacaagtaataatttatagaaagaggattagacacatgagctgtatgtaccagatgtcagcatgctattctcaaattttctaaattcaacaaatgcttcc
tagagtgaatttattcttctaaatttagcagcttatgaagggaatttttaataagcaagaaatacctgtaatctgtttaagttgtctatattaattaaga
aaattggctgcaaagcacacttaaagcctattcttcacgatacacaaaacaactttacctacatagtttatctttgaaaaacgagtttattttcccatac
c Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1971 chr4 181692438 181692603 RIP_Alu_chr4_181_02 0 - pAlu4-181901637|16436 NA NA SINE Alu Yc ggtttcaccatgttgttcaggctggtctcgaactcttgacctcaggtgatccaccagcctcagcctcccaaagtgctaggattacaggtgtgagccactg
cgcccggcccaagaattaaatattgtcaagaagaacgttgtagaatcagcaattagatgtggaaatatcgcattcttaaaataatattcattaatatgaa
ttatttagaatgagtaagagactatatcaattctatgagaagattctaaatttctggcataatacaaagttcttgattttactgactttttttgaatatc
acaactaacattacaactgttaactaatatcattttagaatgtaagacctatgaaaataatttgataaaagatgaacattgtAAAAAAAGGACAGCCTGT
GGTAGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACT
GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGACAGCCTGTtctgtagaataaactaa
atctccagggtataagcttttggatagtttggctcatataagcataaatgaatttttgtgaaatttacatggaatatggttttaatttacatttatgtta
agctgatttgaataaaaaatttaaaaacacaagttcaaaaacaaaataatgtgcattaaagattgaaaaaatcaactttaaatcatttgtttatttgatg
tgttcagtagaacttgactctggtgctagacaacatcactttctgctataatcatgctttcttaaactatcatttattgaatattgattttttgtgaatt
gtgattacatatacatgtatataatcatacatgtgatatatctataattatatataattacaata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1972 chr4 181878185 181878186 RIP_Alu_chr4_181_03 0 - pAlu4-182087477 NA NA SINE Alu Ya5 tacttatgtgtgcagggacgtcaataattcatatttttgacatccagacattatatgacccactgaatattcttaattagttggggaaggaagcatctgt
atggattcacaaattgttttaaacatgcttttaaatattttaaattagagcttccaattaaaattgtacatgtcacattgtctcatttaattccactgtt
ctttttaggaagcacagcctcagctgaacaagcctcactgatgtgagctgagctcaattagtttctgatgttctgccaaattgcctcattacctgtcata
caaacaccactgacacttttaaagtggagccctttgcatccatattattgtctttagaacaaaaataattattctcattagagtagtaaaAATAAGCATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATAAGCATTttgctaataaacagtaaaccaatatatttgtaatataaataatacaataaagcaatgatgagacataaatcaagtgt
gtgcttacacatatacgtatgtgcccctgtggggacacacgagcacacaatgttttaaaattatatagactgtgggtccttcatgcagtccctggaggtt
tgttattacaattactttgaccactgggttttccatattaactgacaatgtattgatgataagagaaactaggagttttccattctgtctatatttgaat
ttaaaatgtacttcacccttggatcataaaaccattatgaattcctcattgtacagaaggcttaaagtggcttaaaatacacttacactacattctagaa
gagaaagtataag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1972 chr4 181924589 181924891 RIP_Alu_chr4_181_01 0 - pAlu4-182133785|Ya5ACA1153 GGCAGGAGTTAGCCAGGTAG CCTGGGTTGTCCTTCTGTGT SINE Alu Ya5 atctccctgtacttcactgaatattctggaatgcctaaaagcaaccctaattattaattcatcaatttaatcatttaaaaatatatgtgtacctaagata
taccagatctcagtctaggaatataaagaataaaacagtccttacctgaaggtttttagattagagaaaaacagtgacacggaggaagtaattaaaatat
gttattagaactgccaccaaatggatatgcacaaggtatcgtggaggtacagtggataattacctaaaccatccttgggtatcagtgaaagcttcttagg
ggaatattaccttagagaaattttaaagtttgggcaggagttagccaggtagagcagaactaaagaaaagcactctagatagatatttAAGAAGACACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGAAGACACAGaaggacaacccaggagtgtttttcaaggttattctacagactacaataaatcacagtaattattaataattgtctcacttacatgg
caaaaagtcgtattgtctcatcaatatccattcttctccttctttaaaaatgaaatcccagcattttagctgggcagttggctgaccatctaaagactgt
atttcttagtctcccttgcaattaggcatgggaatataactaagtcccagtcagggatatatgagcagaaggaaatttgtaatttatttttattttttga
aattttcataaaatctagctcccagaagaatgaatttgtgatttctaaactctgtcttcaaaggaaagtggaatgacttctattctatctttaaagctgt
ct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 0 0 NA intergenic
1993 chr4 184678852 184679158 RIP_Alu_chr4_184_01 0 - Ya5ACA1172|pAlu4-184888050 CTCTCCACCAACAAAGAATC TGCTAGGATTATAGGCATGAG SINE Alu Ya5 caaccaaatggctttctgtttgtctttcatgatgaaattccagaatggtttccctaaggaatgaaacgtgaccaataaactcccagaatctcaaaaaaca
ccagtaaaaagccaccttccctgctgtcctcagcatttgacacatacgtggccagtgtgtgtcctcacaagcctttcctttgccctccatcctctgattc
tgctggaggaagtaccaagtgctttggagccatggcttcataaccagggtccagttgctccctctccaccaacaaagaatcttaatctttcttttttttt
tctgtgttgtacattttttattggtatggataacttattaaagtaacaaatctgaaaacacattttgcttttgctggtggtggAAAGAAAGTGCTATGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAGTGCTATGTTaggccgggtgtggtggctcatgcctataatcctagcagtttgggaggcggagtcatatggatcatgaggtgaggagt
ttgagaccagcctggccaagatggtggaaccccgtctctgctaaaaatacaaaaattagtcagccatggtgatgggtgcctgtaatcccagctacccggg
aggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcgcaccactgcactctagcctgggcgacagagcaagactcca
tctcaaaaaaaaaataaaaaaattaaaaaaaaaaagtgctgtgttagagaggatctaagagaaaccagaagtcatttgcaaaaaataggcatatgatata
gtctgg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 499 176 NA intron
1997 chr4 185130002 185130300 RIP_Alu_chr4_185_01 0 + 2532 NA NA SINE Alu Ya5 cgcttaggtctggcatcatcaaagaatgtctaactctgcttggtaatgatgaaactggtgggggtttttgaattactcttaaaaagttatttccccaggt
aagttcatagcctggatatttccccacataaaagatcaaacattccttaatctcttctctatatcccaccctttaagaccttcaggttagagaggagaca
ttctgaaaaaatccaaatgcaaacagtggtatgtcagaagaaatggtttcaagtggtcgcaacagagaaatagcgttggcaaggcgggatcggggctgat
gaaaatgatacaggcttttatatttctgcaggagttttttttttttttcattccaagcataccagagtttcaccaaagcaggtagAAAGAATGTGAGAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATGTGAGAAGgtgttgtcacaaaatccaggcatgagtgtatttctcctccttagagccagcctcttctggcaagccattggatctcttcaagcctca
gcttctccatctatagaatggctacagcagtgttacttgcttcccaggagaggagcattccatcagcagtaaagcattcattgatcttccttttgtttct
ctgtcacagcctggcatggtcccaaaatattgtagtaatcaatgtgttttgaattaatgggtttctaaatattcccatgcttcacacagaccgttttgga
tctctgaagttttgcaccgtgcagcctgttaggcagttgatcaacctgtgactaccttgtttgtggcttattttccccagccagagcagcccggatct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
2020 chr4 188170860 188171167 RIP_Alu_chr4_188_01 0 - pAlu4-188380059 NA NA SINE Alu Ya5 ctacattattaaaggccattaaatcataacagagaacctttagggctgtgtagaatggatacatttaactgggaataataaaatcattcatttgatttga
acaaatgtttaaggtttagaatcaatctgtcattaaaatcctataagcagaccacagtggaaaatgctagttgaagcagggcggaagagcctgaagtctt
actcgtatgttcccagatcatccacctccttcacaatcaatatcatccccaccaccaccaaagttaccccaaagagcttatagagcactgttctaaacca
tagagcactataagaatgtcctctccataatctctctgggaaaataggacgacttatcctattggcaataaggaggattctccataaAAGATAATTTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGATAATTTGTTGgctggactcacatgaagtaagagaaacctccaggagcctcccaagcccctcaaagtgaaatgaaagtggagcattccat
ggtgggtgaagaaaagggcagcagtaatccaagggcagatgtccattccatatctgtggccagcaggctgagccttgggcttgaggaaatgtaggaaagc
tgaacacaagactgatgcaactgtggaatgcagcaggggtctaaataatatttagctgagaaaaaagagaaagaaagaagccatacacattgtacatttt
gagaatttattttctagaaaagtcagaatgtatcatgtccactgaatctcagcacaattccctctggtatgcacaattctctcccgccaaaagcaatatc
gatataag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
2027 chr4 189061316 189061317 RIP_Alu_chr4_189_01 0 - Ya5-MLS50 TAGAGGGCACACATTGAAGTTTTC CACTTACATTTAGAGGTACCAATGAC SINE Alu Ya5 gccagctcgaatgcctggctttatatcccaatccttgtccctcccgctgcgctctcaggcaatagatgattggctatttctttacctcctgtttttgcct
aattcgcattttagtgagctctctgattggtcaggtgtgagctaagttgcaagccccgtgtttaaaggtggatgtggtcaccttcccagctaggcttagg
gattcctagttggcctaggaaatccagctagtcctgtctctcacctccagatcctattttcccctcacttacatttagaggtaccaatgactatttccag
tagtatggagagcattgacagttcatagcatgatctggcagtagaaatttgcaaaatattaccattagattcccctaatcaaccgcttatAAGAAGCAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
GCAGGgtgagtgtgtatacaatattatacaatattcttcaatatttttgtcaaaataatgagtataatgatattggctgtttgctcctaatgtcactgga
caatgtgggaaaagaaagaaataagctcccagctcaagggttcaatagatgacctgaaaacttcaatgtgtgccctctaggaggcctcatctctagccat
agggctgagattgctgaaaatcaagcctgaatcttgtcctgtgaccagctcaggaggcctcatctctctagccacagggctgagactgctgaaaatcaag
cctgaatcttgcctcatctctctagccacagggctgagattgctgaaaatcaagcctgaatcttgtcctgtgaccagctcaggaggactcatccc Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
2035 chr4 190168403 190168707 RIP_Alu_chr4_190_01 0 + 8061 NA NA SINE Alu Ya4 ataaaatattaaatattctttccaaaattcaaatgtttgtatttgtaacatttattcctgatgctgtatataaagtataatgctaattaaactacagtcc
ccattctcgagtgggcatttttgttttgggttatgactggaatagtctctatttcttatgaactacgtggatttatccagtgaaacttccttcagaaatt
atataaggctgttaggatgcaggactcactgtagcaccagtatcatttcttccctaaacatgaattatcatttaaatttacttcttaaacaacgcttttc
atgagtgaaaaatggcatatgtcatatggataaagaatcaccgaatgacatcagtgtatccaaaaccattgcggaaagataacttGAAAGTACTGGATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGCAGTGACAGGCGCCTGTGGTCCCAGCTACTCGGGTCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGAGCTCGCAGTGAGCCGAGATCGCGCCCCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAAAAA
AAAAGAAAGTACTGGATTAagtctaacgccttaagaggaggcggatggtttacatagtccttgacactggaaacatgtctcaatgacactgtatgttttc
tctctttagttttcacttcattttgatccatcgcttcatgtgaattaaacaatgggagcaggtggtatggaagtcctgatttgaccacattcttctctat
gacatgtcttaaatttcatgagtttcctgtgtaaactctctttggcagaccctctggatacttcgtgatggcaaaaacacatcttactctggtaaaatat
taagggtgttcctcgaatctgaataataaaatggcattgagatgaagtacattaatgatgcttggcagaacaacagtcagggtgttttcaaggtattcct
cctt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2037 chr4 190344844 190345179 RIP_Alu_chr4_190_02 0 - 237921|pAlu4-190554038 NA NA SINE Alu Yb8 ggatctgtgggctttagttttctcaataatgaaatcggagggtaagtcttaaaagtgtgtaacttcacttttggtttttaaattatggccaaataatatt
atgagaaactttatatcatataatcattagatttgaaagaaaacagatattatcgagtaataagatctagtctctatattgatttgattcttgtttaatt
ttgcacagactatacctatggaggaaatgaaatggcttttgttgtaggcagatatttatattattttaaactgcagggatttgcagtaaatgagggatta
taaatatgtacgtgggaaaagactggatattaaaagaaaaaagaactactcaaagataaaatggatggcaaacatttttttAAAAAAATCTAGCATGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGG
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTAGCATGCTCaagaacatatgtgatagacaaatcagaaatcaggaaagtcaagaat
ggtgaagcttgtaaaagaaaagagaaggtcctgtttaagaaaaaaagagaagaatgagtagtttcaagagctagtatatcatccaaatgaagctgcgtga
ctccaccactggctaggagtgtgaccttgtgacaaatacttaaccttcctaaacctcagtagtttgttgatgatcatgatctctcatgaaaattctctgt
gggacttgcacaaacttgatctttaaaaacatagctccattgttatgaatttctcctaacactgaaaacagaaaggtaaagaaagaagagttctgaatag
gcaaaacagacaatacacctattttaggagataaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
2039 chr4 190666580 190666886 RIP_Alu_chr4_190_03 0 - 4965 NA NA SINE Alu Ya4 ccttcacagaaggggagactgaggctaactgggggcgtgtccttcccacactctcccaaacccacagacctgaactcacacgggaatgtatatcttgggg
gtaaccaaaggcttttcaacaggtgcgagacttcgtataagagagatcactttcagatcctagcttcattttagtttctcctaaaattaatctccctgag
aacaagcctgacatgaaagaactggcctttcctttcctgcctccccgttcccagttggaaagcacgtcttcccaggtatgaatctttctgggagcctgac
ccaagttataaaaacctggagtagccctaaaggaaggacgagggatatcactgttgagagagttcatggctctgatgacgactgcatGAAAATGACTCCG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACAGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAAATGACTCCGatgactgcgtgaaaatgctttcgtgggccaggtagggtccacttctttgctctggaggagaagctgctagataattaccta
tgattgttgttaatgtaaatgattatggaattttcagcatatacttcaaaaggatttaaaaccattgagtgacgttgctataaacaaactccttcaattt
ccatctacttgtttatgggaacaaggttttagaaattacatctataaaagtgaaaagtaggaataaaacggatgttgaatccgacctcattgtagcagta
acatctgtggaaatgtgacccactggaaaaaataagctccattcatctcatgaagagatgcatttccaataataactgacttcaggtttatcaatcactt
aaaatc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
2042 chr4 190999785 191000081 RIP_Alu_chr4_190_04 0 + Yb8NBC402 CATTTCCCACATCACATACCA GGTCATCCTCACTTCCAGGT SINE Alu Yb8 ttcaagaaaatctcctaaatgttgataaaacagtggaagtctgtgccctctgagccagagctagttcctattccctcctccagctccatgtcacaggaga
tctccacatcacatgatcacacgtcacatgaccaggaacatgggaactccttttcagccccactcccagtcaaagacgtatgattacaccccaggtgatc
tcatccccagacaccacccctctaagtaaaggaaattaggatgccatctcacatcaaggggacagatgagatgtttcaacaatgttgatgtttggacaac
taggaagatatatgaaaaaataaagttagattcatttcccacatcacataccaaaataaattccaaataagacaaaaactttaatgtgaatAAAAATAAA
ACTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAC
AAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA
ATAAAtaaataaataaaataaaataaaataaaataaaataaaataaaaccatacaaaaacataaaataacattaaagaatttctttaaaacctggaagtg
aggatgacctttttatttctgaaaatccagaatccataaagtattaacattttatcacatacaaattaaaaatttctacatggcaaaaaataaggtattt
ggatctaaagacatataacaaattggagggcagacatttgtaatcatatcacagataacgggtgaatctctctgtataggaacttttagaaatgaagaag
gaaaagataaacaacagaaaaggattcaaagattaatagttctcagaaaaattcaaataattttttgatagatgtcaacctcagttataaaacgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 62 477 172 NA intergenic
615 chr5 4048199 4048200 RIP_Alu_chr5_004_01 0 + pAlu5-4027937 NA NA SINE Alu Ya5 actagtaacattttgccaactcaaacatcaaacccagacttgcttctttcacaaaagccactagaacttcctcaggaaatagttctcatagaagactcat
tgtgcaatgagctatggaaaactcctcagtcttgcaagcagaaagagtcctttggttttgtggggacaaggatgaggctgattgcaggacaaaagcaaaa
gagagaaagaagcaaggtagtaactgctcacctgcagccctcagcctgcctgggcaccttccctccagagttcatgaactccaccagctgcaggcaagga
tcaggctgaccctggatgtatgtgcccagcaatggcttttccacttataaaactccagccaggtcatgagtgccgcctcacctAGAAAACGACAGAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGCCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAACGACAGAAATCcactgcacacatggttccagaaaacaacagaaatccactgcacacacggtcccagaagtgtgggttgagggtgggt
ttgtaatgagctctttgtttcctgtgggtcaccctgccaggcccggtcaggatggggtctttcaccttcagctcaaccttggaccttcatccggctcctt
ggtgtccccttccccagggaagtgcctggctgaccacgtgccctcggatgaggcccacaggtttgttatggacccattctattctaaccacatcagcagc
aaccgagccttagcaatctcatttccaatttgggatgacagagagatctaagttcttgagcagcatggaatcagccagggacactgacctacacacgttt
atcagca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
633 chr5 6337535 6337536 RIP_Alu_chr5_006_02 0 - pAlu5-6317258 NA NA SINE Alu Ya5 tatgcagaatgagcaaagacttggaaccaacccaaatgtctatcaataatagagtggataaagaaaatgtggcacatatacaccatggagtactatgcag
ccataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccaccattctcagcaaactatcacaagaacagaaaaccaaacactg
catgttctcactcataagtgggggttgaaaaattcttatataacactttaatacctttcattcatgtaagtttatttgatcctcacaaccttattatgtg
agctagtcagttattcttagtcccatttaagaaatttagcaaccaaacttcagaaaggttaagtggttttctgtttgtttccttAAAAACGTTTGAATAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAACGTTTGAATACataatttcaaccttgtcttctgttttaatattaagttatagttatttaaaatctgtgtcaaacatctg
tgcctccttgagtttctttctatgtatgtttctgttggtcttcttttgtgagcttttatttaagtgtttttctgttttaaattgtatccggatatggtat
tgccaatttgtatggaagaatattattgcttttctccagtgtagatttacacctattttgcaagatgcctggctacacaaacaatgtgagattacttctg
tctaatttcaaggcttcagatcattttaaattgaactgaaatactgtgagattctacgttatattgactcttatttttagggtgcagcttttgggattca
aatccaagagaaagac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
635 chr5 6577387 6577694 RIP_Alu_chr5_006_01 0 + Yb8AC1290 AGACCTCCTGTGTGTGGACC CCCAGAGCTCCGTTCTGTAG SINE Alu Yb8 atggtttttctctcctgagcacatgaggatgcctgagcctggctggtcctcctgcccttctcagggagacggatggcgtgttccatctttgctctctgct
acattgtgcatttgggcgcagagacaaattcagaaaggcttctaattatgcaaggaatcgaggtctcatctcctcagcacacttgtttacagcactgagc
cctcctctccctctccctccgccacacactggggctttgtcccctctggaacagacactggtcaacagcctggtgtcatcccacagacctcctgtgtgtg
gaccaaaggtcctcaacatttagggatggtcccctcacagggggtcggccctctgtgtctgaacgtggccaagccacgacccctgatgGAAAGTTACAAG
GAGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAAC
CCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGATGCTGAGGCAGGAGAATGGCGTGAACCT
GGGAAGCGGAGCTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAGTTACAAGgaggccagtgtgaggaagaattttctacagaacggagctctgggagaaggaagaaatcaccctgcggaagaagtgagttcc
ccatcacagtgggtatccaacggctgaacgcccatgagtgaggagtgttgaagaggtctctggatttaagggtaggaggcatgacagagtctatgtcctt
tccaactccagcatcctcatggcctcgataccccagacagagtgaagactatgaggccccaagtcctcaagagggagaggggctgctgcctgcaagggag
aaggatagagccaaggaagcaagcccaggggcccctgggagacactgggcgagattccagggggcagggtctattcccagaaacgagatggattggaacg
gccacag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 479 160 NA intergenic
657 chr5 9464773 9465074 RIP_Alu_chr5_009_02 0 + 20788 NA NA SINE Alu Ya5 atttagctcagccactgggctcaagtagacaaataggaagtgagttttccatgtgtactctgttccttatctgcacagtgggtgccctctgaactgagcc
tcatcagaggctatgtgtctcagcccacacgcaagcaacgtgcatgctgcctgaagtggaagcaaaagtgtgttgttagttgcgcacccatagaagcaca
cctgagcctccctatacagtgcccaactagaagaggctgagcacttccctcctgtcatttgtagactgatagtccagtcccatcattaccaggtctcacc
cactgccagaaggatggctcgtcctcagtcccatgaactcagctgtgctcatgagttaccaatgaggaagggatgaaaggagaaaatAAAAATTAATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATTAATCTTgtatccacaaaacataaaaactcacattaagtatcccatcatgattataaaatatcaccactcatcacctataggaggataaacta
aggctagttaagggtaaatgatattgtgactgtcaggactagggcatttgtttagaatgacatagaaggtcttagctaaatccatgcaaagtgttccccg
aaatgaacgttcagtctcctccaggaaggtgattccccgtctcagtaaaacataggtagaaaaatcagtcttatcatgggttacagaataccctttcctt
tctacctcccccttctgcttgtcctaattaagtcctcgaaaattaattgtataaaaacaaaatgtagtctaccacttattagattatcctatacccaata
g UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
660 chr5 9830993 9831290 RIP_Alu_chr5_009_01 0 - A6 ACTACTCACCAGCAAAACACCTG GCAGCTATAGCCTTATGAAAACA SINE Alu Yb8 atgaatgtcactgaactaaataatcgattgtcaatgtagacaaaacaaccttgtattggaagaagatgccatctaggactttccaagctagagagaagac
aattcctggcttcaaagctttgggagacagattgattatcttgttaggggctaatgcagctggtaactttaagttgaagccagggctcatttaccatttt
gaaatcctagggcccttaacaattatgctaaatctactctgcctgctctgtaaatgaaacaacaaagcctgaatgacagcacatctgtttacaacatggt
ttattgaatattttaagcccaccatcgagatctactgtttaggaaaaaaagaaacttttttcagaatattactactcaccagcAAAACACCTGGCCTCCC
GCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAAACCATCCTGGCTAACAAGGT
GAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAA
ACACCTGGCCTCCCaaaagctctgatggagatgtggagatgtacaaggagactaatgtcttcatgcctgctaacacagcatcaatctgcagcccatggat
caaagggtaattttgactttcaagtcttattatttaagaaatgttttcataaggctatagctgctatagatagtgattactgtgatggatctgggcaaag
caaattcgaagccttctggaaaggattcacccatctagatgtcattaagaacacttgtgattcatggaaagaggttaaagtatcaacattaactggagtt
ttgaagttgattccaaaactcatggatgactttgagggattcaaggcttcagcgaaggaagtaatggcagatatggtgaaaatagtgggagaactgg UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.PMID: 7714898.
Library screening NA 0 0 0 NA intergenic
671 chr5 11392038 11392349 RIP_Alu_chr5_011_01 0 - pAlu5-11371677 NA NA SINE Alu Ye5 atttgtgattaggtttcagcctacaaatctagggggtcacaaacattcagaccatagtggctgccataatagattaccacaaagtgggtggcataaacca
ggagaaacttatcatctcacagttctggaggctggaagtctgaaatcaaggtgtcagcaggaccatttcccttcaaattcagtttttcctgtggcaatac
catctgttcctcaccatgtaccagccctcacctcctcccgcggtactgcttttgtcacatctgccttatttccccatagcatgatggtcatttgtagatg
tccctttccctctcacacaactttgaaagctcattaaaaaatgaggctgtttaaaaaatgaggctgtttaatgaaagctcattaaaaAATGAAGGAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGTTCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATGAAGGAACTGtgtactcagccctcatagccaagagggaagataggaagaagggagagaagactccaaggcaaaaagacctttttgt
tttataaaacttccttttcaagagttcttttatcagtttaaaagaaagtaatgttcacacacagtatttgtctgtgataatattgatttttttcagtact
tataataaacaattgcattccaaaataacaactcatttctaatgctacctaaatatacccacctaatttatactaaggcaggttctggcataggggcctc
catgatatcatgtggtcaagagtaatgagagacaggcaatcatgcctgatgcatagtcctacccaaagtactagttacttaattcctcgttagcaaatac
cccatcctttg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
678 chr5 12239500 12239791 RIP_Alu_chr5_012_01 0 - Ya5NBC123 ATCAAGTTGACACTCAGTATTCACCAC CTAGTCTGCAGAACTGTGAGAAATGTA SINE Alu Ya5 ttatgcagaatgtttagtttcagacaaacattgctgaaatgatgggatgaacattaaaactgcttttatgtactaaataacaattttgtaatgttataga
tcatctcatttataatcagtacaaattcatcttctctataatttccataaatgcagtacatcaatttatgtgtatttaaagttaaaattaaattgtatgt
tgtttcaacatcaacaacctaaaaatgcaagtatttttaaaaatctagttgtattgaagtattatcaatccaatcaagttgacactcagtattcaccacg
acaagccgcttccacatttgtaggcattttgttacagcagcattccacttctcactactaatttctgtttagttcattcttactgcaAGAACAAAATACT
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA
GCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAGAACAAAA
TACTacagaccgggtaatttataaataatggaaatacatttctcacagttctgcagactagggaagacctggatcaaggtgctatcagattcagtgttga
gtgaggactcgctctctgcttccaagatggtggcttgttgctgagttctacaaaggataagggtccaaacattgtgtcctcacattgccgatgagatgca
tgggccaaactgctctctgaagcatcttttaaagtcattaattccattcatgaggccagaatcctcatgacttcatcacttccccaaaggccctacctca
ataccaccacagtagggattaagttttaacatgaatattggaggggcacattaaaccatagcagtgctctttgttgaattttgtcaagtat UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening NA 55 490 180 NA intergenic
691 chr5 13908315 13908616 RIP_Alu_chr5_013_02 0 - pAlu5-13887951 NA NA SINE Alu Ya5 tatttacccagtaggcattcaggagctggttgttcagtttccatgtagttgtgcaattttgagtgagtttcttaatcttgagttctaatttgattgcact
gtggtctgagagactgttttttatgatttgcattcttttgcatttgctgaggagtgttttacttccaattatgtggtcgatattagaataagtatgatgt
ggtgctgagaagattgtatattctgttgatttggggtggagagttctgtagatgtctgttaggtccgcttggtccagagctgagttcaagtcctgaatat
ccttgttaattttctgtcacattgatctgactaatattgagagtggggtgttaaagtctcccactattgaagagtatgggcattaaAATGTAAGATTTAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATGTAAGATTTATGgatgaaaatctatgtggagtggttcttgttagtttacttttcatattgagtgatgcatgaggtaggtgttcagagtaatattct
gcatcatagtgagagagaagcattttttattttacttaaaattaagttaaatgtaattaaattactagtgaatcattttactgattgtacttttatgcta
taaaatgcagtacatttgaaaatttttaggttatgtgtaagcttaattttgtaattaaacatttctttaacatgttaaaaaaagtctcccactattattg
tgtgggattctaagtctctttgtaggtctctaagaacttgctttatgaacctgggtgctcctgtttcgggtgcatatacatttaggatagttagctcttc
tc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
691 chr5 13948092 13948379 RIP_Alu_chr5_013_01 0 + pAlu5-13927730|Ya5513 TGGCAGGTAGAGTAGCCAAAA GGCTGTGTAGGAGGTGAGACA SINE Alu Ya5 tattcaacagatgttaggaactcagcctttagaattcagaaatactaattattcaggcagacttactgatctttgcaaaagtgttttctaaataagcctc
aatattcagtgatgtccaggtcagtgcagccaagccaggttggagagcttcatccactttggccaagtgagggacaatcaattgctcaatggcagcaggt
atttttgacttcactctctgatattcagctagcatcatctgcaatgaaattggggttaagtaatcaattaatatctcacttctaatgtctgttaatatct
catgtcttatacaaaatgactacttttatttagggtcaaactgtagggctctaatagcctggcaggtagagtagccaaaacaataaaaagAAAAGAAGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAGACaag
gactctctccataattacaaattcctaatccaaaaaaatacaactgaagatgaacaagaatttaagactaacagtgtctcacctcctacacagcctaaaa
agggagaaaatctaaggccaagtaatttttctaaaccatgcagaaacacgggaatggcaccttcacctgctcatcaccaggcttgtttgttcctctttgt
acactgatacgacatgcgtgctgctcctctggggacctcttgtagactacacccatcacccaaaacatgtgggtcgccagaggtctacctcagccctttg
ctaggattataggccaaatcttgttgccaagacccaaagcacaccgggaaccagtattgatctcaactagtgtcacggctttgaatt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 58 436 139 NA intron
712 chr5 16769626 16769627 RIP_Alu_chr5_016_01 0 + pAlu5-16749365 NA NA SINE Alu Yg6 tggatggaagagaaagtttgcatcctggagacaggacgaaatctatgtagttttaatgtatactttggataatttaatcctaccaaaaataagtagaaat
acttatttccacacaatctgaaaaatactatttcagaatgcctagatgattaataatgattaataacagggcacactaaaccctctacaaaaatcactta
caggcaatccttacctcctgcagcttatttagataaaggacaacagaggtgctgacaaacagggacaccaagagcagggagggtgcttcccaatgaagac
agaaatgcatttatttatgtatcaatgaatccaattgccctgaacattaccgagccttccataatttcatgaacagtgcatgacaatAAGAAGTATGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACAAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AAGTATGACAGgtggatttggaaacagccatttgcctatggtaaggggacattcaatctgtgcttatttaatgaaagaaaatacagtgagtttattatcc
atggaccattaaagttataatgtttttcagcatttgagaaactcgcaaaaaccaaccaaggcatcctgagaagagcccaggaagacgtggctgggggtgg
taggaatccagcttgtcacacaggagccatgggtttttccagagccggccaagattttagggaaaagccattttgtagataacgagactggaaattagga
aggcaaaatgacttgttcaaaccggttattttttttatttttttgagatgaagtctcactcttgtcacccaggctggagtgcagtggtgtgatcttgg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
722 chr5 17959798 17960110 RIP_Alu_chr5_017_01 0 + pAlu5-17923529 NA NA SINE Alu Yc1 gaaatgaaatggcatagttttttcatagaacttttaaataatgtctatgttacttataatacttagtacaatgtaaatgctatgtaagtagttgttatac
tatattgttttagtgtgatttttattattattgcatttttttttttttaatatttagatccttggttggctggaatcagttgcgcaggaacctgtggcta
tagcgggtggactgtgtgtttcattctaattcctaacattcattttctttgtagaaagaattcttgcccactctgttctgtgttctttttgagtgctttg
ctcagatgtttctcgggtgagggattgatctagagaatataattttccattacactaagggctggatatggttggaggaacatAAGAAAACATGGAAGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAACATGGAAGGGaaactgaaggcaaatattgaaatgacagatgagatttataaaggagaaggggagtgctaacattcagaaag
cagatactagaatttcattagtttgaaagcattggcttttataaagtctttgatcaaattagtttagatagaaaataacctctttttttttttttttttt
tgagacggagtcttgctctgtcgcccgggctggagcgcagtggcatgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctc
atcctccccagtagctgggactacaggcgcccgccaccacgcccggctaatttttttttttgtatttttagtagagacggggtttcaccgtgttagccag
gatggtctcgat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
726 chr5 18605921 18605922 RIP_Alu_chr5_018_02 0 - pAlu5-18569744 NA NA SINE Alu Yb10 ttcttggtgcttttgtcaaaaataagttggcgatagacaggtggattaatttctgagctctctattctgttctgttggtctatgtgtctgtttttatgca
agcactgtggtgttctggttactaaagctttgtggtgtatttagaggtatggtagtgtaatacctccagcttttttcttttagcttaggattgaagctaa
gaaaaaatacgttaaaaccaaataaatctcagcaaactaattctctggcattatttaattcttcttaaaactgctcatttgcatattcctccccaaaaag
atatgcccaaaggacacaattgtttaccaacttgatgtggattccacattatcacttttctctctttctgcggaggtttttcatatcaattAATAGTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAATAGTTTCacatggaaggggaaaaaattaaaaatattcatattctattagcattcactgaatggttagaatggtattagtccgttctcacact
tctatgaagagatacctgagactgggtaattcataaagaaaagaggtttaattgacccacagttcctcatgactggggaggcctcaggaaacttaaaatc
atggaggaaggcacctcttcacagggtgacaggagaaagaatgagagatgagagaaggggaaagccctttacaaaaccatcgtatctcatgagaactcac
tattatgagaacagcacgagggtaactgcccccatgattccattatttcccactgggttcttcccatgacacatggggaatatgggaaatataattcaag
atgaga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
728 chr5 18800818 18801139 RIP_Alu_chr5_018_01 0 + Yb8NBC505 TGAGCCTATGACTGAGCATGA GGGGCTCTCATCAGCATTTA SINE Alu Yb8 atattagatcctaaaactaaataggttagtgttttttttttctgaactgaaatagattaacagaatatattaactgaagtaactttgtcctattatttat
aattcttattagacacatgtaattgagcctatgactgagcatgaagactctataaaggacatcgatcaagtatacaatataattttctttaattttgatc
tgaaagacttaatagaaagactgaaatcctgttaaaaaattgattacatttctactggatttgggaaatatgtagcatcagtaataaagtacttaatgat
catttattgtgtttggtgtatgatttattatatccccattttttataaccctcaaagtatttgcaaaattaatagaactttcttAAGAATATAGTGACTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGTCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAATATAGTGACTGtcctcaaaatccacttaataagttgatagcctcaaatttatatttcacctactcctccaaaat
aattatctgtaaatcacagaattcaaggaaagagatggcttacaaaaggaagtatgacttctcatgttaaatgctgatgagagccccggtaaagttatga
gtggttgtatataagtaacactcttagaaatcatgattttcataaaatgtcacttcagcaaaatgaccgggtcaaaatcaatgtggaaaaaatgggtttt
ataggttgacaaatctgttggtttgtttactgaatttttaaattaggtagctactctagttttccttattcatatattcatattacactatgtgtcaggc
agctattttggtgtggcatat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 60 764 427 NA intergenic
738 chr5 20054667 20054963 RIP_Alu_chr5_020_01 0 - Yg6AH35 AATACCAAGGCACAGTTCAC CAGGATTTTGTTTCCTATGG SINE Alu Yg6 ccagcaagaggcaaattggcccccatgatccaatcacctcccacaaggcccttcctccaacattggggggttacaatttgacatgagagttgagtgggga
cacaaatccaaaccatatcaatatgctattttataatgactctgtgttaccatatatcatccgtaaaaagtatgcagatctcattaatttagtagtcatt
cttctatgtcaactgtaagcaaacatttcttaacattagtgagtctattttgtgctttaaaagatagtatcattcttattttattgtctcactataagta
ctacaattctcactccttttgtagtgatttcatggtgcttaattccatgaaaataccaaggcacagttcacattctcaggttcattAAGAATGCCTTATT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAGA
ATGCCTTATTctcagagaactctcttaagggttttgtatttaaagtaccacaactgtttttaccagatctgaatgttccagttattcatttttattccat
aggaaacaaaatcctgattcttctcactttcaatattaattgaatctataaccttaaagaattatttgggaagccaattctataaaagtcatgcagtcat
agatatctcatattttttatcattttcttaagaatcttcacacccaaatatcaaagattgtttagaatacaaaatggcatactttatgtacatgaacttt
gtgtcaggctcattcaaaagcaaagctcaatgagggaaggttctctaagtggtaatgcttcacatgtttactccacactagacaaaagaatcttgt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 55 465 155 NA intergenic
748 chr5 21374012 21374302 RIP_Alu_chr5_021_02 0 - pAlu5-21337738 NA NA SINE Alu Ya5 tatagttaatgatgaatgaaagaaggaagatgttaagatgttagggaaggactcaaaagatgcagtgcttgagttagaattttaagggagattatgcaaa
agcagtcacttaaggtgggttggggtaatctagaatgtgggaatgaggtatgcaaagtcacacaggagagatacagcatgcatgtttagaaaattgttaa
ttacatatggaaagtttgcaggacttgcatcctagaatgtcaggattttaagctaagtagggttcaaattaaatttttcacatacttcgctgcattataa
taactagtttatgtttaactcatccactaaactaagttatttgaaaagagatgccagtgttcactcaatctagttgtctgtcattaataatttAAAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAata
ataatttaaaaataattgagattttaattttggtctgctaagcctgtttaattaaaatttgacattaaataagattttacaggcttctaatttttttttc
agtcatcacagtttgaatattaaacattactacttttatctccctcagtcagcataaaacatactacttatggttttaataaccaaattcaatgagcacc
aacaaaatttgatgtaactattaactttgaaattttattgaaatagaactatgccttgggtatcattcaaagcatttaattgttgcaataaaaaactttg
agataaattgaaatgatggacaatatgggtcgaaagcaacattggcttgagggaaaaggctaatgtttgagaacggaattgttaatgaca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
750 chr5 21687340 21687648 RIP_Alu_chr5_021_01 0 - 6000|Ya5ACA1320 TGCCCTTGTATTCTTACAGCC GATTGGTGGCTCCATCATGT SINE Alu Ya5 attcgtgtgtgtgtgtgtttgcaagagagatttttttcaagatattttctcaatattgaaaaaattggaccacttttttttagcccattcatttatattt
tctagaaattagaacctagtctgtcattttgggttcagttactttcctagacttatcatttgcatttacaatttaaagacttctaaaaactgcagtagtt
gttctggttggttttacactttgacatcatcatctagttgtcaacattgttatgtaataaagtttatcaatgtttacattaattagtgcttacagttttt
taattttcattttttgaaaaacatcatactgtgaggttatttatttttaaatgcccttgtattcttacagccatgaagtttaattAAAAAAAATTATTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGAGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATTATTTTtaccctgggaattactttgaggaaagaaagtggtagatttacagttttatttatcaatgtgatagttctgggactca
tatgtattgtacatgatggagccaccaatctcatacttaacatgtagctaaccacatttcacttaactaaaaatgtaagtgatggtaggttaagaacata
catgctattattaagctttaactgaattatgatttttatctttaccttatcaatttactagaaaagtttgttttctaaaatcatattaattgatcattat
tctttttttaattctatatttcaatgctttattatgtatttacaaatggcattttttttcagtaccagaataatttttttccacagctcatcagatattc
tgaattct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 479 156 NA intergenic
759 chr5 22832382 22832685 RIP_Alu_chr5_022_01 0 - 1159|Ya5ACA1318 AAATCATGAAGAAGAACAAAGT TGTTGGCCATTTATATGTCTT SINE Alu Ya5 agctctctggatctttttttttttttttttttttttataaaggcactgatcccattcatgggggctccaccctcataatctatttacctcccaaatgccc
ccctccgaatactaaagggttagaatttcaacataggaatttgagcgtgacacaaacattcagtctacagcaaatagtcccctgatttttcattaggctt
cccttgctttctatttttgacatggataagaccacccattattaactctttgcaatgtgttgtgagattagacacagagtcagttttaaatcatagtatt
attttatgaaacttgcttttcctcctatgatataattccttactattttatgtgagattaaatcatgaagaagaacaaagtatttAAGATAAAAAATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGATAAAAAATCTGaacagaagtttttcaacagaagacatataaatggccaacaggaatatgaaaaaaatgttcagcatcctactaataactgaaa
tgcaaatcaaaaccacaataaaataccaccttactccaattagaatggatattatgaaaaagacaagataaatgttgtcaaggacatgaagaaacaaaat
tcatgcactgttggtgggaatgtaaattagtaaagccattatggacaagagtatggaagttcctcaaaaaattaaaaatagaactaccatatggtccagc
aatctcataatggggtatatatccaaagaaaatgaaatcggtattcgaaagagatatcagcacttgtatattattgcaacacctttcacaatagccaaga
tgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 400 81 NA intron
763 chr5 23449522 23449824 RIP_Alu_chr5_023_01 0 + pAlu5-23413253 NA NA SINE Alu Ya5 ataggagagatgccatgtgacaacagaggcttagattgaaatgttgcagctgcaagccaaaagatgcagaggttactggcaaaccactctaaactaggca
gtggcaaggaaggaattgtcctctacaaatttcagaaggaataaggccctgccaatatcttgactgattttggactattgatatctataactgtgaaaca
atatatttctcttcttatacctactcctctcctccacatttgtactgtttagctatggtagccctaggaaactaatacactcattgatggagacttgttt
aatattggataggattacagatcccaaaacattaggaacagcatttgctgtcccctgcagtttcatcccaccatgtatttagctaAAGAGACAGAAACCG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAGACAGAAACCGcttcttgaaactgagactatgagctcttttaagttggagttcttttttcctaattaatttttaagagagacgtcaagctttga
gagcagtgtgtgtgtgtctataaggatctttgcctgccggtgggtttgctagtgacttcctatcattgataaaatactacttactttcatacatggagtg
taaatgaaaaagattaattaaatgtaaaccaatccacagtgatccaaattactaagtgattgaattaccaggtagtggattaatatatggtgacatatag
tattagttatttccaagcaattttgtggttttatacattatagcaaacttaaaattttgtaagtgtttctcttctagtctgcactcattcatttagtgtt
tt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
769 chr5 24127379 24127689 RIP_Alu_chr5_024_01 0 + pAlu5-24091110 NA NA SINE Alu Ya4 agatggagctggaggctagcatcttttgcaaactaatgcaggaacagaaaaccaaatactacatattctcacttataagtgggagcttgtgttacaagtg
ggaatgtgtgttgttctcccccaaccatccatgtgtccttaccacgtgtgcagggtatgcagatttattacataggtaaatgtgtgccatagtggtttgc
tgcacagatcatcccatcacccagggattaagcaaagcattcactagatgttcttcctgaccctctcccctcctcctaaaccctgccctccaacaggccc
aagtgtgtgttgttctcccccaagcatccatgagatagaacttataagatagatgaaccattattgtcacccccattttccacatAAGAAAACTGAGGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAAACTGAGGCAtagggagattaagtaacttattcaaatttatatttctagtaagtgacagagtggagatttgaacccatgacatct
ggctctggatcactatgagtaatatctcaaggggcagcttaaattctcactcacctagtattttatcaagtgacatatgaaataaagaaatataagtata
taatttattaatatcagaaatcttggccctaaatttctattttaaatgtaggatttagaacctttaataattgtaaatgtcaaataatgttagttatact
ttattaaaataagaattggcatacttatctttattatttttcatatgtatttttcttgcttcatcttcttttgtttaactccacatgtgtatgtggttaa
tacaacaaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
771 chr5 24488609 24488918 RIP_Alu_chr5_024_02 0 + pAlu5-24452340 NA NA SINE Alu Yb7 aaaaacttcaataatgattgtatttagtatgataattcatatgtagttattcacttcaattttatattttctgtaatacaatattctggtatttttgaca
gtattactatcaaagaaaaaaagtgtgttcatatactatagtaggtaactggcttaaggaactacagaattcaatgaaagtcctcaaaagggctgacctg
ttacaatctctaattttccatgttgaaaaaaaaatcattaattttaaaaatgtgttcacatgtttaaaggcttggaaagtcaacagtgagtctttaaata
attttgtgtttttctcatcattaaaccaaatgaaattgacaggaatgagaacctctgccaaggggagacacttgttattttctgcttAAGAAAACAATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAGAAAACAATAGaacttggacattttagtgtctaagacaaccaaacactcaaacttagaaaaaaaattagagtatgtggttgtataattt
tagatttctgaattccttgtataagtttatttgtaatgtagattttattaaatttattttctattgtataaatgattgcatacatgtaacagattctaat
agattattgttaaatatagtagttaagagcataaattcaggtgttaaccttccactgttaaatcttattttgataaattattatctgcatgaccttgagt
aaattaatagcacctttctcgttgagatgttacgggaattgaatgagttgacatgtgtaaatgacttataatggtctgcacgacattcagaaatcaatca
gtaaaattt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
778 chr5 25311168 25311477 RIP_Alu_chr5_025_02 0 + Yb8AC1275 CAACTGCATTTAAACAATTAAGC AAAAGCAAAGGATCTGTGCAA SINE Alu Yb8 tactgtttctccatatactttgtgccttaactgatatacgatgactataaatagaaaagtaggatatggaataaattacatgtttttgtttgtgtttctg
gtctacaatagcaaatctagaaattcatactatgtttattcatatatatgtacatatatacacatgtgcaattgagaaatcaactaagctatgcaaaata
tattcaaaattataaattcttacctaatataataagtgaaagcttttctaataaataatactaggttagaaatatataatatctatttaataagtcacta
gaaagtcaataatttagtctcatatttgactattttaagaaaatatatatttacagattaatattaattaatacaactgcatttAAACAATTAAGCTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAACAATTAAGCTTCTtaatttctcccaaatagtgaataatgaaatgaactattcttttattgcacagatcctttgcttttctaccttgaa
aatactacattgcacactttattaggtaaaaacaaaggttgcatttcagagaagatacattcacaaggacatacacagggcatctccttagtatgcctca
ctgcaaggcacctgtatctcaaaaacaatacctaaatcgaaaattactgtgcattaagaaaacatacacttttagtcactctaaaatcactgtaccctct
agatgatagcaattttcaagattctttttgttgcatttctcaacctgttccttgtaaatgtaatcatcaaaataacaagcatctcttctccttatttgca
gcatgcggt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 417 93 NA intergenic
781 chr5 25813078 25813387 RIP_Alu_chr5_025_01 0 - 5105|pAlu5-25776807 NA NA SINE Alu Yc1 tgcccggctaattttttgtacttttagtagaggcagggtttcatcgtgttaggcaggatggtctggatctcctgaactcgtgatccacctgccttggcct
cccaaagtgcctggattacaggcgtgagccaccgcgcctggcccctttgcctgtttttaatcaggttatttattttatttttttgccgttgagttgcaaa
gtttttaaatgtattttggatataacccttatcagatgcatggtttgcagatttttttttcacatttaatagtttgtgtcttcacaccggttattgtttc
ctttgctgaactgggcattttagtttgatgcaattctatttgttcattttttcttttgccacctgtgcctttgaagaatacgcttAAAGTTCTGGGAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGTTCTGGGAAAAacacaagaaaacaaaaacaaaatccttccaaccaagaatattaatttgtttttagtttaagtaaaaccataagatt
gacttcagccacagacaaaataattacttaaaagctttgattcaatttccaataatatagtttctctctacaatctgtgtaaaattaagctccatttaac
ttttaatgtaatcatactgtacttggccacaaattatgagtattcatgcagatatttgcaatgagataaaataattttggctatcgaaatttttgaatgg
actgctttgcattgtttttgtaagctcagactttcttattataattttatagaattaatgcataggttttggaatctttgaatcactgatcacacctata
gttttcttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
784 chr5 26146959 26147271 RIP_Alu_chr5_026_01 0 + pAlu5-26110690 NA NA SINE Alu Ya5 ttacttataattgtaaaatgaaaaaagaatggatctttatactatcaacattacagatatgtccccaataaggagtaattaaaatgctagtctcacccat
gtttccagatcatagttcaactagagaaaaaaaaaaaaatcatcactcctaattatgcaaatgtgggaatattgatagacattatccttggattacgatg
ttactaagggatgaagtctgttctctgatatatatctggtgtaaaaaatttgtccttgcagaagtcattggccaatttaaagaggctttcttaaaatgtc
taaagccgacttcctgcagatcctctttctctcattaccaagtatcacactattttctctttatggtgcatatatataagctataaAACAATACATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACAATACATTACTGgcttcttcccttggacttataatgtcacctctttatttgaagcaagcatctagtcattttctttcatcttttc
acaagtgcatattatactttagttctctagataattacctctttcacttttatcaccctgcttctggctaacttccacatcacagctactatgaggtaat
atgaaccactcctaagtaaatgatattcttgaaactgctgaccagaaaattttacatccctatagaagttatagatacagcaatgccttaggatctcttt
tgaaaagtggcaaatacatctggttattctgcaaatttctaaaccctgagttatacctgtcatcattgcaggattcaaaaaagtgttcctgctctatctt
tgtatgtcaaaca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
809 chr5 29475155 29475438 RIP_Alu_chr5_029_01 0 - Yb8NBC509 CCTCCTGAAGGTCCCACATA GAACCTGGGGCAGAATGTTC SINE Alu Yb8 gtgtttagtaaacaaaatatagttcaatgtgactgaagcatactaagaggcagaagaatgtggtgtacactgtagtgtagaggagtgtcttagtttgggc
tgctatacaaaataccatagattgagtggcttatagatgacaaaaaaaagtatttcttactgttctaggggttggaagtccaaagtcagagtgccaggat
gttctggttttggggagggcccttttgcaggttgcagactgttaggtttttgtataagcacatggggaaagaagtgagagctctcttaggtcccttttgt
aagaacactaagcctattcatgaggcctctactatcacaacctaattacctcctgaaggtcccacatactaataccattacactgacagttAAGATTTAA
TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGCGGTGGCGGGCGCCTGTAGTTCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCGGTGAGCCGAGATTGC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTAAatatagaa
attttgagggtacactttaaaaattcagtccataacattctgccccaggttccccaaaattcatgtcttcacatgcaaaatgcagtcattccattccaac
aaatccataagtcttaactcattccagcctcaagtccagtctaaagtccaaggtcttatttaagtattaactaaatcagatgtaggtgagattcaaggta
cagttcattctcacaaaatttctcttcatctgtgaacctgtggaatcaaacaatatgaacattcaaaatacaatggtgagacaggcataggataaacatt
cccattccaaaaggaaccgctattcaaaaaaaataaaataaatgaatgctgtgtcccaagtaaatctaaaacctaacagggca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 62 404 112 NA intergenic
810 chr5 29494736 29495052 RIP_Alu_chr5_029_02 0 - Yb8NBC510 GAAAGGCAACAGGAAGTCTG TACTGCCTTTGCTTTGTTTGC SINE Alu Yb8 gaataataatgcaccataaacacattggacttagttcataaagggaagagccctttgaaattcagaacattatcaatgtaattgtatgatgatgatttag
tcaggaaaaaaaatatatgtgatcagaaaattaaaaaccaataaaagcattatatacatttatttctcatttctattaaaaaattcacatttacagaaga
gaatttcaatatcctggaaataatatttgtaaaatccagcttaaaaaaattatactaacataaaaaaatttaaaaagcagctttttctctgaacaaagaa
aggcaacaggaagtctgtttctattatctctactagacttaattttagaacttatggacagtagaataaggcaaaaattgaatgtaaaaaatAAAAATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAATTAAAAAAAAAAATATtatttattcatataatttataataaaatttatgtaatctatatatcattttaattacaaaatatgcttatcaaata
tttccatataagtctgaggtgcaaaaaatcaattgaatgtgtatataccataaacaattagagaaaaatggtattagcagtacattgaggaaaactaagc
atatgaatattagatgtaaacatattctgcactaaagactataaagcttattgctatacatttgaaaagatctaaataaatcaaggacagtattatgtcc
ctgaaatcaatgattcaatattgttaagtattaaatgtgctaagattgttctaaacattcagtacaatcagaaataaaatgactgttgggttatttttgt
ggatattgtaaaatat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 62 857 533 NA promoter
826 chr5 31713198 31713505 RIP_Alu_chr5_031_01 0 + pAlu5-31676929 NA NA SINE Alu Y ggactgctttccccaaggccagagacatggcggatcctattccttcccctgccaggtgacttaactcactcccttgttgtaggcctttgtgtcccctcga
tagggtcagccctatgaaaaaaggatgaatctacctaggagcaaggccctgcttggggaaaaacaaccaaaatgaaaagtggttcatggctgataagagc
tgaaagctttgaaagcttcagttgccaggaagggttgcattactgtcaagccgaggcggtggggaatgacagcggattattgtgtcctgccctccctagc
cttgcactgggtttcaggggagcttctgggacaaaaccattcgagagtgagaccctgtctctaaaaaaaatttttatttgtttaaaAAGGAGGTATATCC
GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAGCACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGAGGTATATCCatgtgatggagtactatttagtgataaaaagaaatgagctattgacacatgcaacaatgtggatgaatctcaggatcat
tatgctgagtgaaagaagcaagacaaaaaagagtacatacggcataaatgcacttatatataataaaattctagaaaaggcacgctgatctttaggggta
gaaagcagaccaacgtttagggggtcgaatggggatggtaggacagcagcagaggaggaaggggggaggaccaagggaagggagggactttgggggctaa
tgagtatgtccgttatcttagttgtaaagatggtttcatggataatgatggttttatatataaccatatgtaaagatggtttcataggttaaaagttagc
aaacctg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
833 chr5 32607279 32607280 RIP_Alu_chr5_032_01 0 + Yb8AC1334 CTGGCTAGAGTGGTTTCCTGA AGTCCCTTGCTCAAAATCACA SINE Alu Yb8 atttctttcactctagtggaatttctatttttgattctagtattctagtacattgtacatgtatctgtcaacagattctaaactccctgaaggagacaaa
ttaccagtggacaagaacacagcctctggagtccaataggcctggtgcattcattagggtaagtggtgctaggtgctataacagataaacctcaaattat
ttgtgacttcacacaatataaccttatttcttcactcatatgaagtcgtttttagtacacattgccatttatggacataggctcttaccttctcatgatt
ctttgctgcttaatctggctagagtggtttcctgatgtacacagtgacaaactcagagagacacagctacttactagattgagctatAAGAAACTGATGA
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAACTGATGAcatatgaacataaatactgtctacaaaatggcagtttcacatgattaaacctaacttcacatgtgattttgagcaa
gggactctctaaatccatttctttagctataaaatggggtaccaatactcattccctccaaggagattataaagatcaaataagaggatgtatgcaaaga
acttcgcatacaggctgacacagagtcagtaactcaaacaggttaggtatgatttacccaatgcctagcacagactctctggcacatactagctattctt
taattatatatatgcatgtatgtatgtataaattgagatagaattcacataccataggctgggtgcagtggtgctgtaatcccagcacttcaggaggcca
aggcaggcgga Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 492 168 NA intergenic
839 chr5 33391332 33391651 RIP_Alu_chr5_033_01 0 - Yb8NBC419|16571 CATCTCCTGGCAACACTGAG ACAAAGCAAGGGTATTTACAGC SINE Alu Yb8 gtaagagatgccacatactataattctgatgacatcaaaaggttcagtggatgtattcttgaatattctctggacatatgtaaacattttgaatatatca
caactttcatttttcctaataatggaaaattaaccatgcaattaaatatatgacagtcatggatgacttcataaagggattttaaactgaattatagcta
ataaaaaatacaaagcaagggtatttacagctactatgaaaaaattacaaagaaaacaataaaatcatctttagggctttcttattaaaattagtttttg
ctgtctaaatgtaaactttatccttaatttaggttttgttattagcaaattatgttttaaattaattggtggtgtcaaaagtatcattAAAATGTGTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAAAAAGAAAAAAAATGTGTTAAaaagatattattgattgagcactctgtagtctcagtgttgccaggagatgtatttggtttaactgaaat
ataagatatttttgcctttagttatttatagccttcttaggtaaacgagagaaaacacatgaaattatgaaaaaagagtcagtggcgattaagtgacata
ctgtgtcttacaatcactacttggataaataattgattggtatgagctgaggtagtttgtcttgtggttcctgatagagtttctaaaattaaattactat
tccagtatcttcttggacctaaccatttggttaaaggtcaaattccttctgctacatatcagaaattccgtctgtaatttttatttgaacatttccctac
ctttttcaataatgtattc UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 60 572 241 NA intergenic
859 chr5 35945006 35945007 RIP_Alu_chr5_035_01 0 - MIVI-2 NA NA SINE Alu Ya5 tttaccatactcagctagttgcactccagtgaactgattataataaaatatatttaactttgaaatgagatcataatttaattttggagaacagatttac
aaggcctttcaggatgttttagtgccttcacactcatcctcattcatcttcacactttgctatgtggaaatgccatttaaaggtagtttttggtaaaggg
aatgtcaaataacagaatttactctgatttattctttagtgtgctttgagattaacttacatttctaaactgcactgaatttgaaaacaaaatcaaccgc
ccatctccattaacttttatcttcaagttacaaatgcatagcttggtagggtaaggaattatatagctccatgactgtgtctaggctgagatGAAAATGT
TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCGTCTCTACTAAAAATAACAAAAAATTAGCCGGCGTAGTGGCGGCGCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
AAGAAAATGTcatctgtcctttatcaacagccctaaattgactttttagaaaaaaaaaaaaaaccctgagccagttctgttcttagatgatctaagggtt
ttggtgataaggaaaggggattgtcccttgagtaacagtcagcagcagcacagccccagggttcattgtctcttaagccctttacagcacaggaaaagat
aagtggcccagtggacaagaagagagtggttaagggaagaagaaataaaccttcctcttctgaagggaatgtgctccaactttttaaatgaaacttcatg
atgagtctcattagcaaggggtgggggataggaaggtgacctttctgttcttcctgctgacatttccctttcagggatggagacataccctctatttcag
gc Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.PMID: 11700292.
- Economou-Pachnis A, Tsichlis PN.Insertion of an Alu SINE in the human homologue of the Mlvi-2 locus.Nucleic Acids Res. 1985 Dec 9;13(23):8379-87.PMID: 3001638.
Direct sequencing NA 0 0 0 Associated with leukemia intron
869 chr5 37329576 37329887 RIP_Alu_chr5_037_01 0 + 238457 NA NA SINE Alu Yb9 ctatgcagatttagtctgacatcataaagagactaaactagcagtaacagaaacttaattctaggtctggcttcaccagttactagccatgtgacttaag
caggttatttaacatctctgctcttgttttttgcaatataagatggagatactacagttacctgctcatttccatcacaggctaatgttgtaaagcactg
tgtgatgctgctataaaagacacaatctactttgacaagtttttatttggatcttttatccttagcataaaaattacaaaacatatagtctgataaggtt
cagcagggtgagaaggatctttaagcactgatattttagatgaggttatagtaaataaatacaatgtaatcttgttctttTAAAGCAAATGATGATTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACGCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAATAAAGCAAATGATGATTCTTaatgtaatgagtttagcccacaccttggtttagcctctttcaccaagagtaaagcatatttattaatat
tcaaaaataatatttcattttaatcatgatatacaggaaagcaactctcattatcagtttaaaaagtcaaaagcataatttccaagactcaaccaagtgt
aattagactaagtgataggatacaaaaatgcaatcaaaataccccactctatatctacaaagttactttaattaaagaaaataattttatgttatttaat
attttccttacccgtgatttgaacaactgatcataaacttctagtagtctaggtaatggtactccaatttcattcattgtctgtattacgaagcccacat
cccagttcaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
885 chr5 39328737 39328738 RIP_Alu_chr5_039_01 0 - pAlu5-39293110 NA NA SINE Alu Yb7 gctatctatatctcttaaatggggaacttaatgtatttaccttcaaggttattattgataggtgaggacttatccctgtctttttattgattgttttctg
gttattctgaatatcttttgtttcttttttccttcctagttgtttatctttgcagttgaatggctttctgtagtaatctgggcatgtaagaccccctggc
cttccaaccaccacagatgcctttctgcttccccctgaactccagcactctccctttaacatttcagttaaatcttgtttattcattacattgttccttt
cttgtcctgactattcttttttattcagtatgttatatgattccattttatttccagtattgatatattactcatgtctcttttaaaaaATATTTTTTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATATATATTTTTTACtctataacatatgattcacaatatacatccttaatttatcatagtctgccttcaaatgat
attatgctgccttatgtatagtgtaaaacaaatacactatatttccaaatcctccctcccatttttaatgctatttttatcatattgtatcatgagttta
tagtgtatgtatattttacatacatatttttaaatttttacatacactataaactcatactacaatgcgacaacatttgctgtagataatatatgttaga
gcaattaaaactagaaaggtatatttttgccttcattttagttatgctcagagctcatgattactttatgtaggtccaaattttagttctttgtggtaat
tcttctgcctgaaaaatttcctttggcat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
933 chr5 45641875 45641876 RIP_Alu_chr5_045_01 0 - pAlu5-45606247 NA NA SINE Alu Ya4 gtgaaatcatattctctttttttcctatttttaattattttttctttttttgttttacatcagcttagacatgatatacatatatatgcacccctacccc
acacacaatctgttctgtaccaggtggagtttctgtatacactcactttgttatactgtctaaaacaaaaatcgtttgttctttttctatttttcactag
gtttaatgcaaaggaaaatgttttaaggtataaaagtgagagaaattttctggcaatggttgcttaagtagtataagagtcatggtgttcttgatggtgg
aaccataaactgaaagagttggctgacttaacatttccaaccctgcctggggaatatttgacaaagtttgaggtgaaagtttgtgttAAAAAATTAAAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATTAAAGGatgtgaagctaatatttcccatcaagtatgcttacctttgaattttaattttgcttataagtttcattattcacacacaagt
cagaaatgttaatttagctctttctttagatgtattaatttctctcacaaaatgtcttttcaaacttattttttaatcttcacaggtgagttaattttct
ttaatttgtaatcatttttaaacaatattaccagagtgatacatctactctttaaaattgtaaatataattatgctaagagaaaaatgaaagtcctcatt
cagatgaggactgactccaatagtttcattcaccagataacaactgttaattgatttatctacattcttccagtctctttggctatgtactcatgtacaa
tgtac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
983 chr5 52267545 52267862 RIP_Alu_chr5_052_01 0 - 3878 NA NA SINE Alu Ya5 tgaactcactatccagaggtccttccctgcttaaaaggtacaactgaactgggacaaccagatgcagttgtccccttcctactgctgaagcataatctgc
aggcctgaaacctatggcatccctgtgcagcttctttagctgggtagggaacgccttgatctacatagatagacccaaggaaagccagtgatctacccaa
ctgagccttccagactgagagctcctcagatctgaagcagtttcctgggtttgtaaagacgaaatacatcctttaattctggaattctggaggttcctga
ccagctgcacctggacccttaaacatgctccctaactcttatcttcttgatttccagtcaaattctgtttcctgatattcagttAGAAATCCTGTGTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATCCTGTGTTCTgtaattaccatttttttctgattaaaaaatgttccttgtagaaacattggaaaatactgaaaataaa
cgtttcctatacttcaactaccttggtaacattttagtgtaggttacctgtcctatttgcatatatgcatatttataaaatttgtaacacaataaaatac
agttttgtaccctgtctgtaaaatgtattatgctatggcattttcctttaaatgtataagtttattgagaatatgactgttcataacaaccacaatatca
atattgttgactatgtgccacatgctgtgctaatcttcttatatgcattattgcttttaaccctgttaacaactgcaggaagcagatcctcatattatct
ttgttttatctatgagg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
990 chr5 53212698 53212990 RIP_Alu_chr5_053_01 0 + Ya5ACA1360 GCAAACTGGCCAGAAATCAT ACAGAAGATGGTGGTGGAGG SINE Alu Ya5 ctgcttaataaaagtgttgggttgatacactgcatgtctagaaagttgtaaaacaactggagaaggtccagagacaaacctgacttgctccagattacag
agaatgacagctagacttactgtttgcattcttgtctctgccttttggtgagccgtttccattctaacaaaatcttctcatttttaatatttatatgtct
aatgatttaatatcataccacatcactctggccttcaaggtgccctggacacacatttttctgatttacctttacacagattatacgcaaactggccaga
aatcattcatttcaacatgaacctctcaggtaagaattgtggtcttacttctctctccagaaacagctttcttcacagactctgtttAAAACCAGCTCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACCAG
CTCCCtccaccaccatcttctgtaagcttgtccagacatggggtacatcattaggccaggtcttccagtcattcccttgcttgcaaagcaatcatttata
ggcgtttggtgctttgtctgacatctgtttgatgctggaactctagcctttgtctcaatgaatcacttgtcggtgaaagtccattgtaggctggatttca
cactttcaggaggggtttgcctgtgatggaagtgatcttaggctttttgaaataaccagctccctccgcctccctatattccatgaagaaacaggaaaat
gagagagtctggggaacctggtgcttattcaagcctcattttgatttgttcccttgggcctgagccaggttagcatctctggggactacatt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 437 132 NA intergenic
1011 chr5 55963737 55963738 RIP_Alu_chr5_055_01 0 + pAlu5-55898505 NA NA SINE Alu Ya5 gaagtcaactgctcagaggtatttcaaatacccagaaatgtccttatacaccacagtgttcaatcaacttccccaaagtcccaacagtcgtttagaatat
gacttcacccaggactgctgggttgcacaactccaggtatactgtttgtattatattctatgtgaaggtctcccctggagtagtacagcattgccccagg
ctgttttcctacatttatacgagagtaaaaatgaagaggagaactctctggctacctaaaaaaccttgtgttgatctcacctcagggctaatgctggagt
ctcttttggctttagtgccaaggctctacttgttgattcacttatcaaaatatatttgaatatattttccaggcagaaagccttttAAAAGATACAGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
ATACAGAGAcacaaagcttctctaagacaaactctgaaccagggcaacagagaaaccctctgctcccaccaccaggctatctagttgaaacaggagttat
gactggataagtgtcaagaacataaacggaaactgtctctgaagcacagggcataaagcagccttaaagctgaagatggagtagaagcattgaaaaaaat
cctccagtaatccaacctccaccccaagggcaaggtaaaattagatgaattgaactcaatgacacactgagggcaaccatggcaacagcaaaagccaaac
acaattcagctcctgattagactgattcaacatcaccccctccttcctgattaatagcccagcagaagggacgtgtccatttctaggcataagga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1027 chr5 57958937 57959100 RIP_Alu_chr5_057_01 0 + pAlu5-57893600 NA NA SINE Alu Yb8 atcacctggattgctctcaccaaccactggtaaattttaatatgcccaagtgcagtgagctgtgttgttgaggtgtttcctggtgttttggagccatcta
tgcatttaaatagagtcatcaactgcacaggaaaggcaaaaccatacagcttatttattaaatgctcataaaattgatgccctgccctagagcaaaacaa
ttataaatcactggatccacagagagctgtaattcacctattgggatatgatttcctcaggatattgcctactgatgtcagcagcttctggtctaagatg
tgagctgtgtccatgccaccaggtcacctgtagttatttttctattgattcatttacagttatactgaactgaccagtttttctggcattAAACACAGCT
ACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGAC
AGAGCGAGACTCCGTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACAGCTtaaattcggtgcaaattaagcatttaa
ttaccccatatttatttttcaagccagacttaagaaaaaagtacagcatttttctagttggatagtacttattttcagtagtaggcatattcttcttttt
ccttgtgcttttactttcctaacactaattttgctagtcctgaacattgccactgtggcagctaaacagcgagataagagatagcaaatgtgagcatcac
ttgatacaaatcactttgctgaaggtgctgatgcatatgaagggaaggaaagcaaggtctccatcttgttttactatctctggagcaactaaatcaattt
aaaaatgtttacaaagcatcggggccaggcgcaaaggctcacgcatgtaatcctagcacattg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1052 chr5 61329397 61329710 RIP_Alu_chr5_061_01 0 + Yb8AC771 GGCAAAGCTATTTGGAAGATGA GAGCCTAGGTTGAATAGCCACTT SINE Alu Yb8 cctggctacacattagaatcacctgggaacttagcttaacagcaacaaaagggcaccctaatgtgtagccaatggttgagaaatgctgatatacaccatc
tcggtagaggtatactattattatactcgttcttcagataagaaaactgagatacacagtctagctatcttgccaaaggtcgcacattaactgcccaagg
tgcagtcttaacccagagcagctgagcagatccaactatttatttaatagatactgctatttgccatcactgtgattaatgaatgaagacagagcctagg
ttgaatagccacttattcaataagtctgtttttaatatatatataaattcccagcccctccaaaaaaggtctttcaacctgtgttttAAAAACAATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
ATAAAATAAAAATAAAAACAATTTTCtatttcttcatcttccaaatagctttgcccagcatatatatttacatatatataaaatatcaaatgtctttttg
catttaatttttaaattgaggtaaaacttacataacataaaattcaccattttaaagtgtataattcggtggcttttagtacattcataatgttgtgcga
ccatcaccacgtcgttttcatccaactgccatatggtgatatcgctcccctaaaatattttcagcaacccaaagcctgaaaactcactgtaaaaattcat
ggtttagaatcttaaaagtaattatggtttcaagaatatctattaacattgtgaaaacttgtatagctatttgctgttagcagatctaatcttaaggaag
cctgtcttttgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 464 138 NA intergenic
1056 chr5 61812488 61812801 RIP_Alu_chr5_061_02 0 - pAlu5-61747158 NA NA SINE Alu Ya1 tcaagtgggcttcattcctgggatgcaaggctggttcaacatacgcaaatcaatgaacgtaatccatcacataaacagacccaaagataaaaaccacatg
attatctcaatagatgcagaaaaggccttcgacaaaattcaacagcccttcatcctaaaaactctcaataaactaggtattgatgggacatatctcaaaa
taaaaagtgctatttatgacaaactcacaaccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggataccc
tctctcaccactcctattcaacatagtgttggaagttccggccagggcaatcaggcaagagaaagaaataaatggtattcaattaggaAAAGAGGAAGTC
GGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACAAGATCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGG
TGTGAACCCAGGAAGCAGAGCTTGCAGTGACCCAAGATCACGCCACTGCACTCCAACCTGGGCGACAGAGCAAGACTCTGTCTCCAAAAAAAAAAAAAAA
AAAAAAAAAAATGAAAGAGGAAGTCaaattgtccctgtttgcagatgacatgattgtacatttagaaaaccccatcatctcagcccaaaatctccttaag
ctgataagcaacttcagcaaagtctcagaatacaaaattaatgtgcaaaaatcacaagcattcctatacatcagtaatagacaaacagccaaatcataag
tgaactcccattcacaactgctacaaagagaataaaatacctaggaatccaacttacaaggcatgtgaaggacttcttcaagaagaactacaaaccactg
ctcaacaaaataagaggacacaaacaaatagaagaacattccatgctcgtggataggaagaatcaatatcgtgaaaatggccatactgtccaaggtaatt
gatagattcaatg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1057 chr5 61892875 61892876 RIP_Alu_chr5_061_03 0 + pAlu5-61827643 NA NA SINE Alu Yb7 atgggctacatacatgttttgaataagtctgcttagctgtcaggattaattagagtcagtttctggttttgctcaaattatccatttccagctcatgact
taaccccagttcaggtattccagttctgtggtttactataattgaattttaaccatgacttatgaggctttagcctttaaaagtatttacccacaagtaa
aacatattttaggtattttgagatgcctcctcctcttgtttcagatggaccagcttttgggaaatatgattgaaatgtgggttgatcgaatggacaacat
tacccagcctgaaagaagaaaactttcagctttggctttgctctctcttctgccatctgataataggtgaggaaatgttttcttAAAATTTGTTTCTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAATTTGTTTCTTTCaagcatcaaaatgtaaacactatttttggccatcagtattgctgtgtgttgctgggcagtggtacttttatata
tatggatgtgaattttgttagctgataatgatgtggtaaatgttggtctggatccagaaagcagtgagtgggataggtactgttggattgtgggggctgt
agtttattttggttgtattcattttacaaatttatttcattcttgtctgaatttccattttttataattacgttttattagactaatcttcagtcctctg
tttacatagatatattaaatatctaacatttcaaagtcaatagcacttcataaagtatgttataaagtgtgttaattcaacagtattattagttttgttt
tctttttatt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1063 chr5 62740207 62740517 RIP_Alu_chr5_062_01 0 + pAlu5-62674875 NA NA SINE Alu Ya5 atttttattttgtcaaaattaggaacattttctcttccaaataaagtttctttttagaaaatggaaaagcaaggcagatgagaaaatatttgcaaaacat
atctgataaattacttatgctgcattatatcaaggactctcaaacttcaataagataaataataaaaggaatttgcaaatgattttaacacatttatcaa
agaagatatacagatagttaataaatacataaaatatcacaaattcactagtcattagagaaatgcaaattaaatccaaaatgagataccactgtacatt
ctttatagtgggtagaaataaaaagcctgatcatgtaaaatgctggtgagggtgtgaaacaattttaactcttaggtaatgctgattGAAATATAAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATGCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAATATAAAATCatacaactttggaaaacagattatcatgtttaaaaaagtgaaatatacacgtttcttccactcttaggtattactta
atgaagataaatgaaaacatatgcccacacaaaggaatgtgaatggaataaaaaagacaagaaaactatgattcaattccataaaattccagaaaatgca
agcttgcctgtcataactgtaagaatatcagtggttgctggagacaaaagacaggtgatgacagggaagaatagctgtattacaaagtggcatgaaaata
cttcttggagtgatggatatgtttatttccttgattgtagtgatggatttacaggtatgcacatatgttaagttcacgaaattttacactttaaatatat
acactgtgct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1073 chr5 64058898 64058899 RIP_Alu_chr5_064_01 0 + 16397 NA NA SINE Alu Ya4 attgggaactatctgtattagaatttggaagactatcagatatcatttcctgtgagcaatccatcttcctgtgctagaataaatgatttaataatacatt
aacagaaaaccctgagctctaaattcctatttgtttttatattaaagattattagttaactcctaacgcttgaaagtgggctacttttccaatttataag
atacctgaaatattaaaatacatgtattaaatgctctataaaaactacaaagtggcagcccctggtttctacaacctattctgtatgagaactgggtcta
aactagaaataattatggttaagtgcttttaaaaaatgcctgtatgtgcaaatttatgctagtatgaatgaaactgcacgcattaaGAAAGTAGTAAGTG
CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC
TAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG
CTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAAAGAAAGTAGTAAGTG
ataacttctttaaccagttagtttttaaaagagttaatagtaaaaatgcacaggtggccgaagactggaaggaagttgtgatgctaaaaattccttcagg
tctttcacaaccctcatcagccaccatatatatatatatatatgaaactgtcaggctaaatacatataaatacaaaggtgtgtgtatgtgcatataatta
catatatatatatatatatatatatttttttttttttggtgggcggggggcagatagggtcttgctgtgttgcccaggctggagtacagtggtgtgatca
tgtctcctgggctcaagcaatcctctcacctcagccttccacatagctgggaacacaggtacatgccaccacacttggataatttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1083 chr5 65381804 65382128 RIP_Alu_chr5_065_01 0 - Ya5ACA1292|pAlu5-65316484 AACCAATGCTGGGGTTATTAAG TGCCCAGTTGAGTTCAGAAA SINE Alu Ya5 tatgagtttgtttcactggagagcagagtgaggtgtcttgactactatcagtattaagagaaactgaatcagacatccgagatggagaagaacaattgct
gttattctgattgctattgtgtgtaacttcatctgataaagaatctgtttcctttgtatcatctgaaacaaaacaaatttaagattaatgataaattccc
caagaattgtgtgaaattcttttcagtgatgacaaatggcaattataccatcctggttctatatatgaggtaataaattatattgataattggaagcacc
cctgaaaattcagtcctaatacaaagattaaataatttttagatggtgatataatttttcaaaaagtaaccaatgctggggttattaagaattcGATTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAATTCGATTTAgttactgacaaggtgatattattatgtactgttttctaaggtcagttaatttcaatgaatatacttttca
cccatttacaatttgaaaaactgataatgaaaattcatttacaacctttctgaactcaactgggcaagaaattatttcatacatatatggaattttttcc
catctactctaataaaaataagcaattcaatccacaaacatataatcaccaaacaaatcaaggaattttcaaaggtcagctctttcttaatgtttttaaa
acatttcataaacttgtttatgaatggtaaactctcagtatgtaaggtggttgtgtgtgtagcaattacatgaacagaaacagacaagtgttcatattct
ataataggtagtataacaagtagt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 499 169 NA intron
1114 chr5 69349592 69349593 RIP_Alu_chr5_069_01 0 + Yb8NBC543|pAlu5-69091653 TCCCTGCTTTCGGAATTATG GGCTGTGAAACTTGAGGGTCT SINE Alu Yb8 tcaatgcctgttacacatatcattttgttattttgcggcttttctggtttttttcattatccttcatctgtctattttcagttgcaaaggaaatgtttgt
gttgtatatgtgttgtgtacatgcatgttttgagattgagagaaaaagagacagacagacacacagggacagaaagagagaaaacaggagctcatactga
ttttgtattcattagaaggcaagccccatgaaggtggtagacgtcctgctttcctcgctgctgttatttttgtattatcttgatgcttttggcactcacc
atatatttgttggctgtgtcgtgaaatgacattccctgctttcggaattatgaggaggagatgagttacttataaaagcacttAGAATTCTGCTCACATG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAGAATTCTGCTCACATGaactatacaatttttttttttttttttttttttttagatggagtctcgctctgtcacccaggctgaagtgcagtggcat
gatcttggctcactgtaacctccacctcctgggttcaagcaaatctcctgcctcagcctccagagtagctgggattacaggcgtccaccaccacgcctgg
ctaatttttgtatttcagtagagatggagtttcaccttgttggccaggctggtctccaactcctgacctcaagtgatccgcccacctctgcctcccaaag
tgctgggattacaggcgtgagccactgcacccaacctacaagctccttaaattgtatttttattatgaagaccctcaagtttcacagccacttgaggttt
gatc Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 757 436 NA intergenic
1120 chr5 70226685 70227001 RIP_Alu_chr5_070_01 0 - pAlu5-70347702 NA NA SINE Alu Ya5 taataaagtgttcacagattgcatattttatttggaaaactatcaaggataattaaaggggcaagagattagctaagatataattggttctgggaacaaa
agcaatagagttccatgaagcaaagagcattcatgatttgggtgaagcggggcattcacccagaataaaagacttgctaagtttgctcaggttacatcag
ggacacatgtaatataggtggttaaatagatgggggggttaatgcccataaattcttagtccagcattctcatgatgacaggaaaagtaagaagatattg
tcctatttatgtgaaaactggcatggaaaagggagaagcaaaagagaaaattttacaatccattaattagtttcattagcttAAGATATACTCACATATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
GGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGATATACTCACATATAtgcatcatcaaaattctggaaaattaggccactactaacacagcttccaatatgttggtaaagcaa
tagttcatcaagattaaaaataacttagtatatacatttctcaggtacattttatatttttagtcaaagagcccacacaattgttttatgttgatatgga
aaagacagtgctgacccatttctcgtaaagtgagaaactagaacttttctttctttctttctttccttctttctcttttttctttttttttttctttttt
tttgagacagtttcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccaaatggctggaattacaggcaaccgcca
ccacgctcagctaatt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1133 chr5 71952317 71952608 RIP_Alu_chr5_071_01 0 - Ya5NBC311 TCTTGGCAAGGAGATGTGAA AATCACATCCGAGGGTGTCT SINE Alu Ya5 ttctttcttttttgaacatctgttctacatgtgaccatattcactttttctgtagttttccccatttttcaaaattcttgaaagatcagtgacagtggtt
ggatgctttcattgtacaggttctttttgtatcttgaaaggtatttttttcttggcaaggagatgtgaacatatttaggaaattaccatatcttttgaaa
cttttccaggctaagtaacaattttattttacaaagaagacaaaaataaaatgaaagttaagtgattctgtagggcctttcacttgatgatctgcatttt
attccatttccctttaaactattgaaatgcctttgttctatcagtaaagtgttatatcattatgtctcagtattggatctgcttttaAAACTGGTGTTCC
CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC
GTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACTGGTG
TTCCaaggtgtgtagacaccctcggatgtgattttttaaaatgagataaaatcatgggacacattactaatatcctagaaaaacaaaaacattaggagat
agaccccatactatactggatatttataaactttaacatacagcacaaataagatgattggagagaatagagcttcttcaatttttctgtacttaatggc
ttgacaaataatattaatagctaatttgatttttctatcacgcccttacaccactaaacttgagtctgatacaataacttaaatggtctctgtgggcaat
gcatcatttgaataaaaacagtctctggaggttgctttcatcttccaggaaggttacttcttccctaagatgtcatccaatatgggggttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 60 584 279 NA intergenic
1147 chr5 73684752 73685059 RIP_Alu_chr5_073_01 0 - pAlu5-73687606|240|Ya5ACA1339 CAGCCACAACAAAGCAAGAA TATTTATGCAGGGCCTTGGT SINE Alu Ya5 tcaatgtaatacaatgtataattagatgtttgcttgtttcagtcttccccattgcatttcagccaccacacagtcaggggccatatgtctgcttcattca
cttttatattcacagacatgcacaatgcctggagcctaagaggtgctcagtaaatacttgctgaatgaatgagtgacctttgaggaaagcctcattagca
aatatatttcttggccagttgaatccaagctcttgttttatattccagaaagaaaacctgcagattccattgatctggcatggagctggatgtctttcag
gatgaagagttttcattaaaacacagccacaacaaagcaagaaaaaagagcaattgatgtaagcatgccagtcaggttcacatgttaagAAACAGAATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACAAA
AAAAAAAAAACAGAATAAaaagaaataaaaattgataaacaattgtaaatcataccaaggccctgcataaatatgacttgctattatgcataatacaata
catggcatttttgtcttggaacctgtccaatgtggtttattattggaagaattgggtgaatcttgttaaaacacagctttacctgaaatttgatccctag
gtgtgaacccagaggacaatcttatggggattttccaattatggttttaagtaaggagttgtggaattctcatttcatcctcttcaaaatttcttgcttt
aaatgaatgagtagactgaattattctccttttaaaaaacaattgttttgcttggtgaagaccagaagaatcatgccagttctaatgcaggagagaaata
catttta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 60 450 132 NA intergenic
1160 chr5 75471436 75471537 RIP_Alu_chr5_075_01 0 - 52811 NA NA SINE Alu Y tcctagaaggtcaaacaaagcaaaggggcatgggaggaatgaattctgtatatttcaaggaattccagcatccaagtaaaaactacagaaagagaagctg
aaaacatgctcaagatctaccagagatattttctgttttattactattatatttctagagtccaaatagtgcttgtcacatagtagatgctcaataaatt
ttggttgagtgaacactctagctatcaatggaagatataggaatgccaagtagtctgacttggtacagttgaaaggaaagttttaagtaaaacaaaaaca
actactccatttctatccaaaaatatatcccagatttgtaaatatctatatttattctagaattatttagaaatattttaaaaACTTTCAAGAGCTTCTA
CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
TACTTTCAAGAGCTTCTAaaaatggaaaaaagtcaagtaaaattccagttatatgtaaaagtattgtctttttaatgctttgatattattggtctagctc
tgttttcgtccagtataccaattgactctagctaatattgcagatgttttaaagaaaacctagtatctatgaagttggaatatttctccaggaaactagg
tgaacacccaagtaggtctcccaggatgcaagactggtttggacctcagtcttatatgttcagaaacccgatatgtcagcacactaaagacagatctatc
tcttagaagcagtctcccaatggtcaacctcaccacgactgatagaaaaaaacagaatgccagttggccaattaaaatgaaaaacaggactcccaagaaa
a UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1173 chr5 77084115 77084437 RIP_Alu_chr5_077_01 0 - Yb8NBC489 CACAAGGATGTGGATTTTGCT TGCCTCAGCCTCCAAAGTAG SINE Alu Yb8 catgactttggtaatctttggtaaggttaatttggtaaatttgatctcaaaattctcttcagtagtttaaaatcttaaggtcatgttttgttaaattaaa
acctcatttttttttctcccccactgggaatttgggttcttaggagttaggtagcaggagtgtagaacatgttttcagtgaagtttataaaacacaagga
tgtggattttgctaaagaaaatgtaatttttttttaagagttgctttaaaataaagaaaaaattaggccgggtgcggtggctcatacctgtaatccccgc
actttgagaggctgaggtggacagattaacttgaagtcagtagtttgagactagcctggccagcatggtgaaactccgtctctattAAAAATAAGCCGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAGAAAA
ACAAAACAAAACAAAACAAAACAAAAATAAGCCGGAcatggtggcatgtgcctgtaatcccagctactttggaggctgaggcagtaggatcatttgaacc
tgggaggcggaggttgcagtgagcggagatcagataaaactaaatggataaaaagaaaaaactaagccagaaaggaaaatcggaaggaaggaaggaaaaa
attatacagataaacctaaatggataaaaagaaaaaactaaacaaaagttacctctgagacctgtggttacagagaagatagttaatgtgggggaagggt
aaaaccaagtaactattaaaccatatggtataatgtaaacaaattgttccatttcgtaggctggtatcatcagcttcctgagaaacctttactataatgg
attgtaaaaataactactttaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 62 591 255 NA intron
1173 chr5 77098081 77098375 RIP_Alu_chr5_077_02 0 - Yd6JX35|pAlu5-77100929 GGAACACATCAAGAGACTGGAAA TGTTGCTTTTAAACAAATCCTTGA SINE Alu Yd6 tgtcatgattttaataaatcatttgttgcctgaaatacatttgtactctatgaaatttttgaagacctccaagtctactgaagtgtatttgaacttacat
tactagtatagtattataattttgatttccaaatctagaatgttaagttctgaagacgctgcactatatcaaagtatacaaagattttcttaaggccaaa
cagttcttcacgtcttttcaggaccaaagggatggtgtctgatatatcattgcttttcacagaattgtttttcaacaaatagacacttaatagatatttg
tcaattgagctaaggactggaggaaaccagaaaagggtttatgagggggaacacatcaagagactggaaataaaagtttgctttATAAATAAAAGTGAGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC
GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAATAAATAAATAAATAAAT
AAAAGTGAGAgacttagaaatggagaaaaaagagaaacaaccgctgttaagtaataaccaccctcaaatagacatttttcaggatagtatttttatttta
ttagagatataaaagatatgaaaatatatcaaggatttgtttaaaagcaacaattttacattttttaaactaggaagagactagtctattgtggaaaatt
taaaaattattacagttctgtcaaaaagtttttgtagtttacctagaattaactagaatagattcttaaattctagtttaatagaggggtctgtgtttgt
gtgtttaactgcctgctaagttacatagactaatccactccaggttattattattattattattttgcaacttaagaaaaatagtagggacata UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Candidate screening|Genome comparison NA 60 505 195 NA intron
1173 chr5 77140988 77141306 RIP_Alu_chr5_077_03 0 + pAlu5-77143846 NA NA SINE Alu Ye5 actctcatagactgaaatgtaaattagcaaaatcactttggaaaacagtttatgtttgtattgtctagaaaagttgaacatatgctaagctagtagttct
acttctatagttctacttctatgattatacccaagagatattcttgcatatgtgtagcagtaaatgtgaataagtatgctttagaagcattgctcataat
agcaaaaaaagataaccaaatattcatcaaagtagaatgcatgagtatcatacagcagtagaaatgaatgaactgaaactacacacattgacatgaagaa
tctcaaagacaatgtagagcaaaagaagcaaattacacacaatcacagacagcatgtttgcatttatattaacttcaaaagcagacaaAACTAAACATTA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACTAAACATTAtatcttggagagatatattcaaacatggtaaaacttcaaaagaatggcaaagaaaagattgctcaaacat
tagcccaattgttagtcctggcagggaagagaggcacaatattgggaaagaacatatggagagcaatgttttacttgttatcttggatggtggctacata
atcacttactttgttactgagaggtgaagccagctggacttcctgggtcaagtggggacttggagaacttttgcgtctagctgaagggttgtaaatgcac
caatcagcactctgcagaaacgcaccaatcagtgctctgtgtctagctaaagaattgtaaatgcaccaatcagtgctctgtaaaaatgcaccaatcaaca
ctctgtgtctgactaaag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1181 chr5 78128460 78128756 RIP_Alu_chr5_078_01 0 - Ya5ACA1335 GGCATGGAAACTAGAGGAAC AAGTGATTCTCCTGCCTCAG SINE Alu Ya5 aggttgaacctgttttgatggccaaggccagcagatggatgtcaatatccctatgtgaaatacaggagtggagcaccatcgaaggaatgatgtgagaagg
aagtgagaaggctgggctttgttactgtgcaggttcacctgggctagaggcactatggttggatacacaaaacaacagtctgggttagagataagattct
ggagtctagaatacccagcgaaatgttgggcatggaaactagaggaacgaaaacattgaagagatgaacagtgaaaaaagaataagcaaatgaggctgaa
aagaatggcaggtagaggccgggcgcagtggctcgtgcctgtaatcccggcactttcggagaccaaggcaggcggatcacaaggtcAAGAGATCGAGACC
TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCAGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAGA
GATCGAGACCatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcgtgtgcctgtagtcccagctactcg
ggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaagattgtgccaccgcactccagcctggtgacagagtgagactcc
gtcaaaaaaaaaagaatggcaggtagaaatgagactcccaaagatgaacccagatggagcattttctctatgccaggcactgcagtaagtgctttgcacg
cattgtctcacttagagactgaaaaggggaaggacaccttagaaagaagaaaatttcaaaaagagagaccctccttctgccttgatcatatttgtc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 597 287 NA intron
1182 chr5 78313495 78313801 RIP_Alu_chr5_078_02 0 - Yb8AC1282 AGGAATTGCCTATATTCCGTG AAGCATGACTGCCAAGTTCA SINE Alu Yb8 actgatgctggaagaggttaagaaacttgcccaaggttacagggctagtatatgttggaccaggatttgacccagggcacgtggccctagggttgatgcc
tataaccactaagccatattgcctactcaaaattattaaaaataacatcccaaggactgcttcatacatactaaataatccctgtattacttttggacat
ttgggtcattcctaaatatctcaaggtaaagaatcaacccatcatatttctgagttaggaattgcctatattccatgtaaaataaaaatagattttattt
ctgagtcatttgttatgcataattttagacaataaaatgaaggaattttttgactgtctcaaaatgagttacttgaaggaagttgttAAGAGTCATATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAGTCATATCTatgaacttggcagtcatgctttaagttaatatttacagacccctttcccataattatttaactttagaaaagaaaagcaca
agttgataaacaagcctagactgactggactttatactctcatgaaatcctgagttttagtttttttggtttcagaaattatttattgagtaaagaggac
tggttaggaactgagatgtaggttttggtcttggctggtcagactgtgacctcgctggccatcatttccacatctgtgaaacagaggagttgggctgaac
tctagactttgtctagctctaaattaatttaactctaaggctcttgtgtccattagggcgagtttctaacttggcaaatgcacattatcatacctatcat
actaac UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 483 165 NA intron
1188 chr5 79049467 79049765 RIP_Alu_chr5_079_01 0 - pAlu5-79052320|4235 NA NA SINE Alu Ya8 ttagatttgcatgatgctttattctctcaagcaatcacagtgcactaacgggaagtatataaaacaaaagaatgtaataggtcggatatctttctcatga
agtcttttagaatgcattaaatatcaattgttattaaaatgggaaagtcacctatgatcctgcttatattacaagctttgaaagatatattttaagccat
aaaacaccaagaaagcttgtgatcttttaatacaaactgttagtgttttatatgagtcttttaaaaaatggaattcttaaaagcaatcattaactctaca
attaatatttcaccaagaattaatttaatattaatgtgtttagctgaaaaaaatatgcattgctgaataacagttcagcaaactataatatAAAATAGCT
GGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AATAGCTtaggttaaaaggaacttttatgccattagggagttaagaaaaaatttcatgaaaccatgaatgaataaattgttacacagcataattatgccg
taatagaaagtgttcattttgtagatatactaaaggccattcaacatcattgtggatggaaagaataaggatcctgttatcacaatgatcaggtacttta
gaagcctggaagttagggccctctactatttgaaacctggttatcttcccattcattaactctataatccagccaaacataggcttcactcttcatgcct
ttgctgatatctttcttttcacttagaatgaatcatctttgtatattttatctcttatttattttagagaccagctcatatatcaacttctccatgta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1192 chr5 79592954 79593258 RIP_Alu_chr5_079_02 0 + 12749 NA NA SINE Alu Y aggttgggagttcgagaccagcctggccaatatggtgaaacctcttctctactaaaaatacaaaaattagccgagcgtcgcggcacatctttaatcccag
ctcctcaggaggctgaggcacaagaatcacttgaacccaggaggtggaggttgcagtaagccgagaaaacaccactacactccagcctaggcgacagaat
gaggctccatcttgaaaagaaaaagaaaattaaaaagaaacagtctatacaggctcattccctttccccactcagagttttttcaaaggaatgtggccag
atctggaggtttacctgccttctggctctgaggactttgcagttactatttaaggtctggttaatagcttcctttgcatcgtggttggttAACAAGAGTA
GGCTGGGCAGAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG
TGAAACCCCATCTCTACTAAAAATATAAAAAATTAGCCGGGCCTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCGGCCTGGGCGACCTAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAACAAGAGTAgaggtaatgttagcagacataacacgaaacagtggcaccttaatttttattttaagtactctgcagactttttcaggggagacttg
atgttcataacacgtagataattttacagtcaagctcttttgatgtgactttttcagtaaccagcagtaacagacctgttttaataagactgtatagctc
ttggcagaccatgtgaaatatttcccccacaaaaattttcttaaattaactgaattagctccttttatacaacataattatatataagtatatataacat
aaatatctagcttataatttgcttttttctcctcctgaatttgaagatttttttggtagagttcaatgttgagtttaaaaacaccacacactggctgggc
gtgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1201 chr5 80786912 80787227 RIP_Alu_chr5_080_01 0 + 17409|pAlu5-80789769 NA NA SINE Alu Yb8 tgcagaatgagaataaagaattgcaatagtattcactgaggaggacaagaaaagtagctaaggaagagtgaaaaaaacaaactgctggtaaagcatcagg
gaggacctggctgaggctgaacatcacagatcctaattataacgtgttaagtataaggatagaaatacgcattaggcattgtggaagaatcaaaggtgtc
ctacaaatatttcaaatttaacgttcaaaaaaaaacaaaaaacaaagcccccaaacctcattgcctacctttacacctgcttcttttcctgtgatcctag
ctcagttgtgttattcccattctcccagctacttggattcaaagagttgaaatcaccttcaaaactcttaccttctctttatccctAAATCCTCCTTCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATCCTCCTTCTAaccctaccctatactttatattaaatactcattaagatgaaatgaaaggtaaaaatgaagatgtagaagat
aagcaaaattagaggattagaaagtcaaacacagaatttgaagaacttattatttgacagagaataaaattaagggccacacatactgtctggctaatct
agacagatcactcaaaaactgtgatgagaatccaaatattctgaaatattctgagtcccaatacccatgattgtggtgctgtggtagagggcagagaagt
aactagaggactttcattttgttaaatgatctgtaacattttagataagtgcctttcttcaactgtgaagtttaaagctatcttacaagcactggtttac
tagaaataagggaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1204 chr5 81218246 81218578 RIP_Alu_chr5_081_01 0 - pAlu5-81221117|19522 NA NA SINE Alu Yb8 ggtcagtttattgttcctgatcttctcagtgatgtatagatatattgcatagggaaccccggtgactagcttactattccgtgcagttagcggggatccc
cgcaagcagctctgaggccctaagagaagtccagcattttactatatcttctgccattagcaagttttcttaaaatctgcatataatctacttaaagatg
tcaaggctgtttctgctttattctgcaagagacaatttttggttttgcaagttctagtatgggtgggtggtggctatgggagagactgcacatcacaaag
caaacctatttctggataatagcagaggaaaattttgcagattccatactggctggtctaacattgcacagctctgtgtaactgtaaatAAGAAAAGCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGCAGtactaaagctacagatatgcctttatttcccccagcttttattttgaaagattacaa
agctacagaaaagttccaagaatagtgagatgaacctccatataacctttatctagatttcccaattactaaacattttgttacatttgctttctctctc
tgtacatatgtataggtgtatttgtttatgtgtgtatatatatatatatatatatatatgcttttatatgcatacacattattttgctgacacttttctc
ctaataataaagacattctcttacataaccgtaagactggaaatttaacattgatatgataacattacatattacaggccatattcaaatttcttcaatt
gtctcttcaacctccacctcctgggttcaagc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1212 chr5 82192488 82192787 RIP_Alu_chr5_082_02 0 + pAlu5-82195345|401 NA NA SINE Alu Ya5 ttctgtacatgtttacatgttccctacatatccccttaggaggacacagagaaacacttccttgttctgattcttactttgattaacatttgttaagcac
tcaatttgtgcagagaactatgtgagacactggagttgaagagggagaaggaagaagatgtacaaggagacaatacaaggtccaaccatgcaaagaagtg
ttgtatagttttaatgaaggagataaaattgtacacagatactacaagaggcaatgaaaggaggaattaagatattctgaatgatgtaataattatagaa
atcactagcttcaaattgccaaatcagaacattacagttctaatctactgggatagggcaggagagcagtacagagggaatgttAAAGAATTAGAGCTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAATTAGAGCTCTcaaatagaaatgaaagtgggtatgacagcattctatacattccagccttttcaacatcatggtgtatgtgcatagacagataaat
agataggtagacataattttatttttacaatgcctcgaggtgtaaaggatttgtgtcagaggaaaacaagtcaccagcgacctaggccttgtccagctgc
ttccaaggttaacaggactggtgcctctgaggcccaccatacccactgggaagctctgcatatttgagacatgctccttacatggattttcccactagag
agtcagaatctcaaatataatatgaaggaatgttggcccaacatagttgaccatggtacatgtgatgtggcatggttagcaaggcgatatgagccggga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1217 chr5 82941831 82942134 RIP_Alu_chr5_082_01 0 - Ya5ACA1352|Ya5-MLS06 TTGGGGAAATTGCTCTGTTC AATGCTGGATGAAGAGCAGG SINE Alu Ya5 gattcagactagcacagcttcagctgattccttgaggagtcctggagttcaaatggcccttcagagtagtcccacattgtggtgaaatgagtctgagcct
ttatatagcagtcagtcattggatgtgggctgccctaggaaggatgtgtccttgggcaagatgtgaacacctggagcacaatcacttcctcaagggatga
cacctaaagaccatcttctgagcacttccaataagagccatttcatgtcaatcacatatgtctccttgtcttggggaaattgctctgttcttttggacac
ttgtccaggtacacagtgctgtgcctgtactcgaataatctgtgcaccaccaccttgccagcccatgccaactctgcttcctttAGAATCCTCCAGTCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGAATCCTCCAGTCAGggagagccctgctcttcatccagcatttttcatgtttgtaggcaccaagaagatgcttatcatgaagtattgtttatcctg
gagtatatcatagctgtcctgaagggcttaattcttttcactttttgtcctgctcaccattctagagaaaacagctatttcctctcattcatccatattc
ttgatttcttcaacatttgttcccagtataaaagcaagttctctacctgaggactattggtacatacactaatatggtcacatttagtttttggatattc
atagttttttttgttttttgttttttgtttttgagatggagtcacgcactgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacctcc
acc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization|Candidate screening NA 55 476 157 NA intergenic
1244 chr5 86408451 86408452 RIP_Alu_chr5_086_01 0 + pAlu5-86411408 NA NA SINE Alu Ya5a2 aacgcatttatttaggaatgctttccaggaaaaggcatttttgtcataggagaaaaatctatgggtcataacataggacatgacagtttcatgcgggcta
ttgcccctgaaggccttccaggaccttctacatgaaggggttattgcccccggaaggccttcaggggcaatatgttccaggacaacatgaaggtcccgga
aggccttcaggggcaatatgtcccaggacaacaggtagaagtggtaaacagtggtattttccaccagcataggcccaggccaagatgtgtgtttgtgtct
acatttttagcaaaatagttttaaaataaaagaaaattaaaaatagaaaaggtacgtggaatagggatgtcaagatacaaaggatataAAGAAAATATTT
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG
CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATATTTtt
ctacagctgcacaatgtatttgtgtttaagtgttattatgaaatagtcaaaaggtttaaaaccatttaaaagtttataaactaaaaaagttacagtaagc
taaggttattaaagaaagaaaactttttaaataaatttagagttacctaaacgtacattgtttataaagtttacagtagcgtacaataatgtcctaggcc
ttcacattcactcactcactcacaccattcactcactactcactcagggagtgactcatccagagcaacttgcagtcctgcaagctctgttcatggtaag
tgccctaaacaggtggaccactttaaaaaccttttgtatcatatttttactatgccttttctatgtttagatacacaaatactatt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1256 chr5 88067785 88068099 RIP_Alu_chr5_088_02 0 + pAlu5-88070642 NA NA SINE Alu Yb7 aggcattttgccttgtctcacagagctcacttgaacatgtagctctctttgagctcaaagttctgaaactttcttttatttggatgtttaggcattttga
gttttcttcacttgtttctttttcttttctaggactttgaattatgaatacaagcatataagactaataagcataaacagaattagtcactatggaccat
ggctaattctgccattggcataaccattttttaatctaccaaactgtcatcttctattatcccctctcctccttccatctccatatccaatgagatacca
aatcttattcatttttcttcagaaatgcctgtctctacttccactgccaccatcttagctttggcttccatcaccatttgaataAATATTTCAGCAACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAATATTTCAGCAACTCtccatctgggcctctggtctctacttgaggggttcttcaccaggccttaagaggagtttcaggccttcag
aggagttccttaaagctgtatgcaaacttttgtgcatttgtgtgatgctaaccaacccactcaaggaagtctttctgaactgctacttccatcatgttcc
tttttcatacatgagtgcttaacacagttgagtcagtgccctgcctggctctcagaactgtctacagttgacacactctatctatgaaacctaatttcca
atggtcacagcctgccttatggtcctcggaatatatgcaaatctttgctctagcagttcaataactggcagtattggctctcctgtttaattcaaattta
tcttttaaggatca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1256 chr5 88078910 88079222 RIP_Alu_chr5_088_01 0 - 6653|Ya5ACA1355 GGGTGGTCACAAAGACCAAG TAGGCCATGTTTTCCTCCAC SINE Alu Ya5 cacagtgattagcaaacaagatgaataacactagcttcctattttatatatcttttgaaaattaggtcgagccaaattagtgtgtaaactcacgtagtat
tttgctggacatggaaatgaaattttttccctcaaaaaatactttgtggtttgtagcctcaaaatgagagaaccagatcaaatccagaccaatgtttctt
ggatccaagtctctaccaaacactatgattagaaagaatggtgaggactgagaattgggtggtcacaaagaccaagatataatataagaaaaatggttta
gatgttatgatgttttacccaatatctcactgcaccgatttgcttgccattatggaaacagctagtagtggttctgaaagtcattAAAAGTAGTAAAAAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGTAGTAAAAAAaaaaaaaatgtggaggaaaacatggcctactcagctttgatggaagtggcttgttactgcttaatagctagaa
tgctttggaatcctatattgaaaataaaaagtgtttggttgttcaattattctgtcattgtcaattcccagacagttggctaagtttaatgatcctctag
ggatagagaagactctcaatcctgtaggcataaaagtttgacacacgtaggatatagtaacattgaactaacaaaatcttatgcacttagcaaattcatc
ctcttacctcaggacctctaccataggtatgagaatcttctaattcagaaatagaagaaaaccaaaagaaagatactgaattactccaccctggtgataa
taaatattatat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 500 163 NA intron
1270 chr5 89896191 89896498 RIP_Alu_chr5_089_01 0 - pAlu5-89899055 NA NA SINE Alu Y gcaaaagctaatgggtagagagcttcttttggaggtgatgaaaatgttctggaatagacagtggtgatggttgcacaactttttttttgagatggagttt
tgctcttgttgcccaggctggagtgcagtggcgggatttcagctcactgcaacctctgtctcccgcgttcaaacgattctcttgactcagcctcccaagt
agttggcaatacaggcgcccgccaacacgcccagctaatttttttggatttttagtatagacagggtttcaccatgttggtcaggctggtctcaaactcc
tgacctcaggtgacccgcccaccttggcctttcaaagtgttgggattacgggagtgagccaccacgcccaggccacaactttttaaATATATTAAACGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
TATATATATATATTAAACGCCatggaaatgtgtactttgaaaggtgattgtttttcatatgtgaattatctatcaatttaaaaaacaatcaaacctctgc
acttccagctatctctttctcttctttcaacatttccagccaggttaatctaatacgtgtctgggacaaaacacttgtattattcatgcttctgcacctt
taatctaagctagtcccagtcctctctacctttttccactccctctcttccaccatttttcaaagtcccaatcaagtcccactttttccagaacactctc
caaccttagcttactagtctgccagagaaggaacaagctctcttcatttcattcctgctcatcaacactgttgaaattagttaaataaaactaatgattc
taactat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1276 chr5 90610458 90610742 RIP_Alu_chr5_090_01 0 - 5344|pAlu5-90613324 NA NA SINE Alu Yb9 gaccgcctgcatcaaaagcgccgcggtaaaaatgcagattcttgaagctcacttcaaattacagactcagaatgtcctggctgggtgggggcatggaggc
acctgtctgaggtcggggcctagaaataatccatcgtattaaccaactacctatcagtgattcttaggtacatttaggtttgacaactatagcaagaggg
cgaggatgtgagacattatactgggtagactctaggactccttacgatatagaacactgtgttctaaaattgatgtttaagttttgatggaaggaaaaaa
tatttccaaatttggttttatatattatattgtttgctttaactgtatatttatatagacaaatttcttttctttttttttttttttctttAAAGAGAGA
AGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG
CGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC
TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAgtctttc
tgtgttgcccaggctggcctcgaactcctgggctcaaggaacccttccgcctcagcctctccagtagttaggactacaggcgtgcaccaccactcggctc
tttttctttcttcctttttatttttatttacttattttgagacatggtctcactctctcgcctaggctaaagtgaagtggtgggatcttggctcacttca
gcctcaccctccccagaatcaggtgatagtcccacctcagcctccccaggggctggggctacaggtgtgtgccaccatgcctgaataatttttgtatttt
tttaagagacagggtttcaccatgttgcccaggctggtctcgaactcctgggctcaagggatccgcctgcctcggcctcccaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1283 chr5 91516543 91516886 RIP_Alu_chr5_091_01 0 + Ya5-MLS04 GCCACATTGTAAGCAAGTAGCAC CCTGTATATTAAGTGTGGGGTACTCA SINE Alu Ya5 aagaattttgatcaaatgtactgaaatatgttggtctgaacaaggtaaaacctatttctttattgcaagacttctcagagactggataaacataaaatca
taagggcttagattgtttataccttagttacccctgtatattaagtgtggggtactcaataaatattgatttaataaatatcctaatgcaagctgtgatt
ctctagaatgagagtgaaaatatgctatagttcccaaatatatttggcccaggtccttttttttccccacagagcatcttgctgtacagaacacacgtta
ggaaatgctaatgtttggattattcctggaagagactattactaggaatccctttcccaaaaactttctctagagcaaatcgttaaaagTAAAGTCTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAATAATAAAGTCTATTatcacaaaaattcaataagcactgacagaatgcctacagttccagt
tattgtggaaagtacaaaatattgggaatattaacatggttacaattaagtccttgcgtccagattttgccacagtgtgttgaaataatttgtgtttgac
tggcttattataatgtacactacagatataagtggtagttcaaagcaacaataaatagggaagaaggcaggggacacagtaaatagcatttgtaatacac
ctactctgagtcatgcactgtatatatatatatatatataaatttcacccacttcataggcctatgagtttagtaagcatcatgacctgctagcacagaa
atttagaggcaatatagtatattgcataagaacatggagtctg UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
1309 chr5 95019976 95019977 RIP_Alu_chr5_095_02 0 - Ya5NBC27 CTGAATACAGGTATCACTGAACAGAAC ACAGTGTAAAGTCTAACCTACCAGAGGAT SINE Alu Ya5 tgttaatgctgtgctgaagaaggtaaagaacatcttccaggaagaagaatccataaggcaaaacagagaggagagtgaaaattgtagaaaagccttttct
gagcctgtgctttcggagcctatgtttgctgaaggtgaaatcaaagcaaaaccttataggtcattgccggagaagccagacatttcagattaccccaagc
ttcttgctaataagcagagtaataacatccaagttttacattctgtgtttgaccaatcagctgaaatgaacgagcaaatctgaatacaggtatcactgaa
cagaacttaagagttatctatttaatggcacatttcatctgacaaaactcagagtctagtttacatattctgaattgctctgctttcttAAAAAAAAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA
GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA
AAAAAAAAAAAAAAAAAAAAAAAGAGaagggggctactattaaaatgtcattttctagtatttacatgatagagtaaataaaatgaatattgatgtggaa
tatatgtactgactacatacttttaatgaacaagaaaatccatcctctggtaggttagactttacactgtggtttataatataagcatatttataataca
ttaatgtttttattaaagacttgttttgagtgtctaattctttacttgggaggaaaaaaagccccatcaagatggtgcatatcaaaataaaagaatattt
attttttatatgcagactggagagtttgagtctgcctattattattttgtaaatcacttgcaaagttatgaaggatttgcaattcacagatgtcataaat
ttataaaacaaaata Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening NA 55 591 265 NA intron
1312 chr5 95369082 95369421 RIP_Alu_chr5_095_01 0 + 32645 NA NA SINE Alu Ya5 ctagtagttcctgctcaaagcaggaaatcttggaggtggtacagagtgttcttttcattgtatgtgcagattaagcttccctaagaataatgctatttct
gggtgcaagactggattaaccatccttgattctgttgactttcactgtgtgaagaatgactaaataaatttcatttctttggctatttctttgacttttg
aatttagttataactcttttgcaggcttttatggacagaatatttgtatctccctaacattgctatattgaaactctaacctccaatgtgatggtatcta
gaggtgagccccttgagaggtaattaggtttagatgaggttatgagggtggggctctcgtgacgcgatgaaattagtgcccttttAAGAAGAGGAAGATG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGGAAGATGtgcggcactgaagaaaggccatgtgagagtgcagtgagaaggtggc
tgtctacaagccagaaagagggccttcaccaaaaactgaatcagctggcatcttggtcttggacttcccagcctctaaaactgtaagaaataaatgcctg
ttgtttaagtcacccagtctatggtattttgttatagcaacctgagctaagatgcagaccttctccaacttctccagttttttgattaaatgtaaacaga
actgggcaattatcaaacctttatcaatattgagaatatggaggtgaaattctcctacttcctttatatctatcacctgttcacttttcctgttactata
ctctaaaaccaaatccaaaaatatatgatttttgaagac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1316 chr5 95935487 95935817 RIP_Alu_chr5_095_03 0 - pAlu5-95938354 NA NA SINE Alu Yb7 acatccatatccaaaaagatgaacataggcaagaaaacttcatgcctcaaagaaaaattaaccaaaaatggattgtaaacataaatgtaaaatgtaaaat
tacaaaacttttaggaaaacacaaggaaaatttgagaattagggctaggcaaagagttcttagactccatgcatgaaatacaatccataaaaggaaaaat
tgatgcattgaacttcatcaaaataaaaacgattgctatgtgaaagcccatgttgaaaaaagatgaaagacaagctacacaatggagaaaagattagcag
accgtatgttcaataaatgactagtacctaagatacacaaaaaagctatcaaaacccaacagaacaaaatgaatcaatccaattAGAAAGTGGGCAAATG
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTGGGCAAATGtgtgatgtttggataacaaatttggtgtatttccaatggaatactacgtagcaa
taaaaatgaatcaaatactgaagacaaatcatagaagatctcaaaaacattataataatcaaaacaggccagaaacaaagaatatactatatgattccat
ttatatgatgttctaaaacaggcaaaaatcatccctcatgaggaaatcagaagagtggttgtttgagaaagttggattgtctgagaaggggcacaaggga
actgtttaaatttatgtaaatattctctatcttgtttgcagtgtgagttatatggatatgcctatgtcagcattcaccaaactgtgcatttatgatctgt
gcatgtcattttttttttgagacagggtgt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1331 chr5 97871850 97872150 RIP_Alu_chr5_097_01 0 + 8484|Yc1RG194 GGGATTAGAAATGCAAGTTTGAGC AGACCAGAGAGGATTTCATAGGG SINE Alu Yc1 catttctctgatcacagaattaattattttgatacctttctttaaataacagcatcatcaaaagctgcatattttggcaatcacttatagattcaattat
tggttacctttgattgaacgagtaaccagaatgacaacagccaaggttgttttgttcctattgcctttgtgagcctttcctgggttttacatggtgacat
tcaaactggccgtaacaaggcaagtacagttactgtacccattgaccatggactactcttacttagaagctgtttttgagtaaattccaatgtgctacca
aactttaattaatcaatttcctgttatatttttgccagctatataaaaaagggattagaaatgcaagtttgagccacctcccttaAAAAATGCAATACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATGCAATACAAttgcaacttgccacacaacattaccctatgaaatcctctctggtctcaaaattatgaatattaattgtttcatccagtaccttat
gttcctaaaatattttacaatcatgtttagttaatcctcataaaatcccatttaggcgtgccagcatttatattctcatttcataaagcgaggttcagaa
aaggtaaataatggtataagtggttgagcaagccagttgaaaagtgagattgaaagtctgtgtagccattctcctttcagcagctcactgtcttccctac
aacatttccatgttaaagtgctccagtggacaaattttctttcctgtatctccagggccttattgggccccaaaacctttatatttgcttggtaataggt
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening|Trace comparison NA 65 411 95 NA intergenic
1341 chr5 99202228 99202527 RIP_Alu_chr5_099_01 0 - 16142 NA NA SINE Alu Yc1 aatttgttccatattaaactgtagcttgattagtgcaattgaataaaatgatattattaattacagatggaattctattctacaaattttataaagaaat
taaataaaatctttctgttattattactgtgcttactatatgtcattaggtctttatttaggaagattagttttgttaatatcgatttaacaagctgtct
catgtaaattaaaatattttcgtgatgtcatctctcactggcatcaagaagggtttttatcatatttgacactgtaatgaattttagaaagcttagagat
atttagaattactgatataattttaagaaatcagacatagcttttgatgttttctctaagatgagtatttttattttgttttgatAGAAAATGATAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GAAAATGATAAAGAaattttcaggtggttttaaagactgtatgaacaatgtacagcaagtccacttgttttataaggaatctcataccctggatgcttag
ttaatttctatttgccactttagatactctcaaacttcagtaaattttttcacccagtaataggataaatacattatgctttggtagtaaatcacatgct
tacaaataaaattaaaatcaactgaacccccttatgtaaaataatttttaataataatgtacactaaagatgcttactataaataaaagtgtagtgtttt
gaggtatgcttaatggccagcctaccctagtttcattctttagtcttaggtgttttctcactattacagtgtttgtcaaactggcattcctaatgagga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1346 chr5 99787375 99787677 RIP_Alu_chr5_099_03 0 + Yg6AH30|pAlu5-99790231 TCCCTTTCTAACCTTGTGAA TACTAGGGCCCATTTTATGA SINE Alu Yg6 ttacttcttctcacctagaaaccatcaagctttaaatggtgtggcaaaaggagctgaaaattaaactgaccttctactgcatacccttaaattgacccag
gaggagccctagctgctattcccatgccacgcccctctccagcaggaagtagccagagtaagtcgacgcccaattccccgtaacagcagttaggaatttc
attcctgaggggggtgtttgttataggagataaaaataaattatttgggtagacagagtaaagagagtccccggcagaatactttccttctaacaaaaag
cagctcagaaatggctccctttctaaccttgtgaagttcaaagaaatcatttctcttctaacaaagaacaacctgaaaggctgtAAAAACACAGATAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAACACAGATAAACaacttgggcacagaaagaggtgggggagtctcctcggtaatcaccaaacttcacattcataaaatgggccctagtaaaaaca
atgggccttaataaccacattcctttccctttaagcacactaagataaggaagctaaaagcaggggggcaggggaggatccctgcagctgtgcaagaaga
tgagaagatgtctggaacagacacagaaactctccctcccagataagcaaaatagagcagcagaaactaagagtctacctatgtaatcaaggaattgggt
gagagctgatagaaaactctgtgctatgcacatagcacacctgattccaactaaatcttcaggccttaggaagataagacacccctcctcactagcccat
tt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 479 161 NA intergenic
1347 chr5 99951446 99951737 RIP_Alu_chr5_099_02 0 + Yc1NBC50|12923 GGTATGGGGCCAAATTTAATCCA TCCAAGAGAAGCCAAACCTACAGA SINE Alu Yc1 tttcacctacattttattggccaaaacaaaccataaggctgcacccaagttctacaaggcaaggatagataattctttcgcaaggaagtaaattggagta
tttggctatccacaatgcaaacttatttttacctatatgccaactggctttccatagtgaatcaagtcaccatgatgtcagtgtatatatatatatatat
atatatatatattgtgtgagcagagactaaagtggaaggtatttgttcttctaaaggaatcggcctctcttcagatcccactaatagttaccatgagaaa
gtccttgcctgtgttgttagctcttagtttttactttccaagagaagccaaacctacagatattgtgtatgaaatatccctaatttAAAATGTTATTAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATGTTA
TTAGCacagaacacatatttggattaaatttggccccataccttatattttatgacatggaaaaaatcatatactgtagtatcttggaaataataattta
tttaataactgctgtcatttataagctagctttttcattaacactcattagaagtaagaatcaaagaataagaattctgataagtggctgggcgcagttg
ctaactcctgtaatcccagcactttgggaggccgaggtgggcagatcacgagatcaagagattgagaccatcctggccaacatggtgaaaccctgtcttt
actaaaaatataaaaattagctgggagtggtgatgtgcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacctg UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 60 406 101 NA intergenic
1355 chr5 101011952 101011987 RIP_Alu_chr5_101_01 0 + 32574 NA NA SINE Alu NA agtagagcagttgtttgtagctgctaatggattaggacaaggaaaggggagaataatgagtgtggtctgtgcctccagtttgttggaacaacattgcagg
aatcccaatggctttatgctttctgacatttggatttactttaaagagatttgtcccaggatatctgccttccagctgcagctattttagttcagcagtc
ccaaactattttggaaccagggactggtttagtgggagataatttttccacagatgcggggcagaaggggaatgatttgtggataaaactgcaccacttc
atatcatcaggcattagttagattctcatgagtacacaacctggatcctcacatgcgtggttcacaataaggttcatgctcttAAGATAATTTAATGCCA
GACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGATAATTTAATGCCAtggctgatctgaccagaggcagaactcagcccaccacccacctcctat
tgtgcagcctggttccctacaggcaatgagcaggtacaggtctggggcctcagggttggggacccctgttctaatagaaatgctgaagtgctagtggtta
ggaatataggaggccatatgagaagttatttaaatagagcattacttacaacaggtaataagttcagtgcagcagccctcaaagaaagcatttcaaaaaa
taagcaaaagagtttcatgcaagagatagacaaaatttggtcatataacatacagtgccaaattacatcagctccaaacaaagaggaatttaattcaccc
tgactctaggtgactctaccccgatccctttctgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1364 chr5 102191272 102191506 RIP_Alu_chr5_102_01 0 - Yb8NBC615 GTCCAAGAGTGGTTTTTAATGC TTCAACCCATGTAGGTATGCTG SINE Alu Yb8 agatcttgggctcattgcaacctccgccttctaggctcaatcaatcctcccacctcagcctcctgagaagctgggaccacagatgcacaccaccacgctt
ggctatttttttttcttttgtatttgtagtagacagagggtctcgccatgttgcccaggctcgtcttgaactccagagctgaagcaatctgctggcctcg
gcctcctaaagtgctgagattataggtatcagccaccgtgcatggccatgaatagaacatttaagaaagaattgagaatagtttcaaaaggaaaaattaa
aataaatatcagctttatactacattaatatttgtttttatgtaaattactcaatgaagtccaagagtggtttttaatgctAAAATCATAGTGAGCTTCA
CCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCT
GAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTC
CGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCATAGTGAGCTTCAaaagatattgtaatttttattttacattccactggaatcctagctat
aaaaaatcacgcctcatgaaaacagacttggaatatttcaaatttatagacattttcttaaagtaagaatattttaacaatattcaataatcatttgtat
tatgaggataaaattaaaaacagaagaaaatattagaatgtatcaggaaggtgtataaaaaaaatactaaaatgttattttattttcctaggatcatagt
ggctcagcatacctacatgggttgaatatcctttatcaagaaaatgtttgggaccagaagggtttcaggttttggatttttttttggattttggaatatg
ttccattatatttagttggccatcactaatctga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 568 315 NA intergenic
1371 chr5 103058466 103058778 RIP_Alu_chr5_103_02 0 + pAlu5-103061322 NA NA SINE Alu Yc2 actttttgttttctaatttattatccccacactattgcttttattctctattcttctaaactgtcattcaaattatacaactaaataaatgttaaaaaat
tataatttatatctggtcttgcggtcaaagatagtttgataacataacaaagatttcttacacatttttctttagtatataacatatagttaagactgat
acagaaaccttaggatgcatttgcaggtaactagttacatatccaatctttctgtctctctatctagtcttggaacctaaaaatacagaaatatgcacct
tgctaaagacaaaagaagcacagccatgctggaatgcaagaatttgtacagatgttaaggatgtgcttcagcctggttctcgcatttAAGAATCAATTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACCGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAATCAATTGTaaaaaataaagaaaattctaaagtgtatcgtcaggttcctagaaataaatagtataaagtagaggcagaaaggag
atgaaatgggggaaatagaacagaagatgaaaataaatgccaaacttggaggcattaaaataattctgtaagcatattttttacttgaggttaattctca
tttttgttaggacattctgtcttcttaatagcaaagagttgattgaccattttgaccctaatttccatcctaagcaagtcaaaaccacaaaggcaaatca
cagttattttttgtgtgaaaatagtccagatatggaccattactcttgatgcttgtatttttgtgttagaatatgtttggggaatgcctgtatttgtgaa
ccctatggttat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1371 chr5 103090215 103090521 RIP_Alu_chr5_103_01 0 + Ya5ACA1368|3715 TGTCAGAGGCTAACAAAATGA GACACAGTGTTCACATCTATCTCT SINE Alu Ya5 gaattctggtagaaattgaactatcagatgctgggttggaccagattaaatttaaggccctctcttgccttgatattctgtgaattacctttcagtaact
cacaaatttatggtgcccttcatgtcccaccatatggactgtcatctattccactctgtagccatgactctcttgtggagcctctctttcatcccctaat
tagtgatacacaagagagaatgggtgaagtactcatttaccatcttacctgcttcctaacaaatccacagccaaggggatgtgctctgcacaatcagagg
tttgtcctggcagatgggtaggcttgattacgtatgtccacatactattctttgttgtcagaggctaacaaaatgatgacatggatAAAATGTGTGTGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATGTGTGTGTGtgtgtgtgtgtatgtgtttcctactctgtagccttatagtctacataaaagagagaacagtgtacttttccatgtataaa
gaaagtagcaaaaaaaaaaaaaataaggtagagatagatgtgaacactgtgtcacatcccattgttaaatgtattcagaaggtctggggtgaagatggtt
cagtgcacctcttctggttatacctgggcacgaaagctggcagaagcagatttgactcaggactagcagttctctaggactaaatggatatgggaacaac
agggtcttgagaactcaagttgaatgtcaatttctgtcacaaatctgacacatactcaaagatttcattacagtcaaagagcagtactggtggggcattt
aatagg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 60 498 178 NA intergenic
1374 chr5 103492325 103492326 RIP_Alu_chr5_103_03 0 + pAlu5-103495288 NA NA SINE Alu Yb7 acattatttaaatgcttttcttcaccttttaattagagaagacttcgaatgctggtttgggaagaagtgaaaaaggaggatttcttgcggtactgcctta
acttgtgcatcctagtcagtaaaatgagctttgtagataaatgggtccattcattatgggaaacagcttaacaaatatcagtagctattgaaacatgtat
ctttgaggacaatcttgtcccaaccctcttacgcaataccactttcaatcatatagagttctggaaattcaatattatctatcttattatatttacagtg
gtattttgacttcccctatagactggaaattggcttcctggcagctcacgagcacccttgacatttaaaagagatttagttAAGAAATAATATATTTTGC
GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTACAAAAAAAAAAA
AAAAAAAGAAATAATATATTTTGCttggcttatttgcatttaagggcttggtggtggggacaatgcaagtctggaatttaaaagagcctacagcaggaaa
tatcactttaaaagctatcgtaatattgatagttaaaaccatgttaattgatgtcttcttggtaaggaaagaaaaatatagagaatcatgagcttaaaag
cacttgagcacttgggaacaccaagatttaaagatggaataaggaagagcaattggggaataaaacagaaaaaaaaacccaaaaaacaaaaaagtagtca
gaattgtagaagagattagaaacattgtgaatggaatgacaggaaaagatgaaagtttcaataaggtgatggtgaatagtgtgggaaagcgaaaagaaat
acttg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1417 chr5 109078904 109078905 RIP_Alu_chr5_109_02 0 + 2455|pAlu5-109081855 NA NA SINE Alu Yb8 ttctgtgaggtttggctttatttagttttttgttgagtacttcttgagtacctagccttgttgtcatccatgataagggaacagcaaaaaaaaaaaaaaa
aaattatttttgttgtgtggtctaaatctgggctggacagaaaggagttgcagagcaaccatggaagtcaggcagagcaagtcaggagggtactgggaga
gctgcaggactgaaggaagaaacagacactgctaacacatcctcctgcccagcttgtttccaaagatttgtcagcttatccttgagaagattttatttta
tttattaaactcatatattccatagggagataaatattattggcttaaaatactttgtattgactttcatataatttgtttggcctttAAAAAAAATTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AACAAAAAACAAAAAAAATTTAggatgtgatttttgcagtctagttttaacataatttaaattttacaaaaggttgtttggttgtgttgtcacatttaat
attatagagactatgaagaacaaaagtaaagttttagtttttttcccaccgttttttcctttgcatcccaacattattagccagaaggaatgctgcattg
aaaagctagaaaacaataggatacataaaagctaaatctcaattttaaaatttttctcaatttttagatgattatgcctggttgaccctgttgtagtttt
acttctaggataagataggtagatataacatatgctacatggcagaatagctatagatagatatatttttgttcaggcatagatttttaatatacatgag
atttactata Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1419 chr5 109325005 109325307 RIP_Alu_chr5_109_01 0 - 21141|Ya5ACA1376 TTTCAGTCTTGGACCATTTCAG TCTTCGACTCATGTTAGGCAC SINE Alu Ya5 cttcgctatcctggaaacagactctcttaataagtgctgtaattatataattcttaagttccaggctccactagcaagtttgagaataagggaagtatca
caaaaaaataaaaagcagaagaggttgcaagacccaaggaaacaccactcagctggttttctatgtatcaagagttatgcaacacaaatgttctcactca
gaaatggatcctgatggcattacttttgtactgaattaagttccttcaaaaaacagtttcagtcttggaccatttcagttatgtgagtcaataagtcttt
ttgcttaagctaggtcataaggtatatgcaatttatgcatctacattataaggctttcataaataactaaacaaggtaatggatAGAAAGTGCCTAACAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAGTGCCTAACATgagtcgaagatacaataggcacagttaaatgtgagctctcttcctctcccaactattttcactttattaaatccacacttaa
attggacattaaagtttaaattgttattagtaattccagtaaatttcattattaactcagttaattaccatttctcctcttgtagggctctgaaccctct
tccatcttcttatgctcaattgcaggagagaggaaggaggaagaatggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaggagggagggagg
aagggagggagggagggagggaaagacacagaaaacctctagccatatgcacaatctctctctcttttacctgtcctattggaaatacggactaggactt
ca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 472 154 NA intergenic
1441 chr5 112198788 112198789 RIP_Alu_chr5_112_03 0 - APC CAACTCTGGGCCAGTTGC CCATCCTTCTTACGAGTGC SINE Alu Yb9 tcaaaaaaaaaaaaaaaaaattattattatggatactaagacatcattagaaaaatgtgaacctttatattctctggatcacgctcatagtttttgtctt
gttctaaattttgttttcatactcttttatactatactaatagaaatggattattttgttacaatatttgtgactattttttcctccacctatgggctac
acctctcaactataatttgcttaatttagtctcctctataatactataaactgttattacattaagtacactaatgagttaaactaagagttagtagtta
tcttttcacagtaataaatatattttggcttaaaactttcatgattatataaaacattgcttacaattaggtctttttgagagtatgaattctgtacttt
nnnnnGGCGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAnnnnnaaaagtaata
taaaactctatatatacctgtggtcctcatttgtagctatcaagctggacacattccgtaatatcccacctccactttcaataatggctaaagtgtttgt
ctggctccggtaagtaagagtgccaaccaaaaatgcaagtgcaccatctacagcacatatatcagctttattctcagtgcaatgtgctgacaaattccat
aaggcactcaatacgcttttgagggttgattcctagtaagaaacagaatatgggtcatctaattagagttggaatttgtctctcattaacttctatgtta
ctgatattgaataaaagctattttttaatctatcctattgcccgtccctcactggtaaattaagaactttccatttagaaaaatgttcat Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.PMID: 15983781Su LK, Steinbach G, Sawyer JC, Hindi M, Ward PA, Lynch PM. Genomic rearrangements of the APC tumor-suppressor gene in familial adenomatous polyposis.Hum Genet. 2000 Jan;106(1):101-7.PMID: 10982189.
Direct sequencing TSD unavailable 60 0 0 Familial Adenomatous Polyposis intron
1441 chr5 112203765 112203766 RIP_Alu_chr5_112_02 0 + APC GTTTCTCCATACAGGTCACGG CTGTAGGAATGGTATCTCG SINE Alu Yb8 acttgatagttttgagagtcgttcgattgccagctccgttcagagtgaaccatgcagtggaatggtaagtggcattataagccccagtgatcttccagat
agccctggacaaaccatgccaccaagcagaagtaaaacacctccaccacctcctcaaacagctcaaaccaagcgagaagtacctaaaaataaagcaccta
ctgctgaaaagagagagagtggacctaagcaagctgcagtaaatgctgcagttcagagggtccaggttcttccagatgctgatactttattacattttgc
cacggaaagtactccagatggattttcttgttcatccagcctgagtgctctgagcctcgatgagccatttatacagaaagatgtggaattaaGAATAATG
CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGCCGAGGCGGGTGGTCACGAGGTCAGGCGGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGCGGTGGCGGGCCTGTAGTCCCAGCTACTCGGGGGTGAGGCAGGAGAATGGCTGAACCCA
GGAAGCGACGTTGCATGTAGCCGAGATTGCGCCATTGTCGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATAATGcctccagttcaggaaaatgacaatgggaatgaaacagaatcagagcagcctaaagaatcaaatgaaaacc
aagagaaagaggcagaaaaaactattgattctgaaaaggacctattagatgattcagatgatgatgatattgaaatactagaagaatgtattatttctgc
catgccaacaaagtcatcacgtaaagcaaaaaagccagcccagactgcttcaaaattacctccacctgtggcaaggaaaccaagtcagctgcctgtgtac
aaacttctaccatcacaaaacaggttgcaaccccaaaagcatgttagttttacaccgggggatgatatgccacgggtgtattgtgttgaagggacaccta
taaacttttccacagctacatc Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.PMID: 11700292.
- Halling KC, Lazzaro CR, Honchel R, Bufill JA, Powell SM, Arndt CA, Lindor NM. Hereditary desmoid disease in a family with a germline Alu I repeat mutation of the APC gene.Hum Hered. 1999 Mar;49(2):97-102.PMID: 10077730.
Direct sequencing NA 61 0 0 Hereditary desmoid disease exon
1446 chr5 112909329 112909635 RIP_Alu_chr5_112_01 0 - 239016 NA NA SINE Alu Ya5 tgagaagtgaatgattgagctactgtaacattttagttttcctcacatggcttaaaacattagaatactggactctgggaaatgtacaaactgtacataa
gagcagaggagagacctgagtctacacaggatgaccataatcaaattaacagtctagtattcactaaagaaatatcaggaagaaagctaaggataatact
taaatacttaaaatgcatcataaatattttaaagtcactgttttcagaatttaaattccttaactttcaagtaagattgctaaactcttcagagtaaata
ttttttaaaataatggaaaaagaaagaacgcaagaaaactgcagatgaacaaatatctacactttcaaatccaaaaagttacttttAAAAATGGAGATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATGGAGATCAattatttttcaaaaaatcaataatgagggcccagcacagtggctcatgtctgtaatcccagcactttgggaggcaaaggt
gggcaggtcgcttgagcccagaagttcaaagccagcctggccagctcttcaacaaaagaagagaaacaggttttgcagaagagatgaagtattcagtctg
gggcatattagaagtatctaaatccaaagctctggaggctgaggtgggagaatcacctgagcccagaagtcaaggctgcagtgagccacaatagcaccac
tgcactccagcctgggtgacaaagtgagaccctgtttcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaaagaataatgagctttaa
aaaata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1455 chr5 114119981 114119982 RIP_Alu_chr5_114_01 0 + 20676 NA NA SINE Alu Yc1 taaggattgtttgatattttaaaaccttggtaacttacaatatcaacaatatattccttggttgatatcactataaactctctcactggaagattgcttc
tattccttcaaaaacacacttagaaccctgcttcctggcagatagtagggacataaaaagctgagtcagcccggtagactttctaccaggagaataatta
ctaactggcatgcagcctgcagaaaaaaaatctatgagggtggaaactatcatttacagggaacctaatctcaggagtaacagagttaaacatggtgttc
tacatttctattcttgaagcgacccagggctaacacctgccaaggttttaaaacattataaaaggatatttagtaatggagAAAAAATAATAGAATATGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATAATAGAATATGTtaatgtcatccccattttattttttaaatgtgatagagattgataatatctagataactagacaaactaatggctaaaag
aagcatacaaactcaaatgccaagaagcatgcaaacacaaatcaaaatttgaggatgaactcaccccttgtgaagttttcttcctgaaagacctggggtc
cagaattgttttttccacaacacttaaaaatgtggctaaagcttccctatttatttccggggcaaagctgcatcctgtcccatgctatatctcaaaaatg
agaagcagaatccgtacttcccatgtttggtggtcacagtccacctctaacaagattgtttataatgatgagaggtgttccaccaacaaggctcttttgt
a Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1469 chr5 115922047 115922356 RIP_Alu_chr5_115_01 0 - Yb8NBC597|238944 TGAGGTGTTGCAGACGATGT CGCATGCTTTAGAGAATACCC SINE Alu Yb8 ttgggaccactcttcaactttagggaggttcataccataatatgaggtggctaataggaggaagacggaagcacattcattgcatctataaaaaccactg
ttaaaaatgggcaggaggaccaagcgctaaatgatctgttcatgtaaaaatcggggcatatatggagccacctagttcctgtttatttcattccaaacaa
ttttactttatgaaagtttttaaattctgaaattagatatacatgtgttctccctctccccccggctcaatgttgggcatatttatatgagtgtttgtct
cttaaattgccatgtgcaactgaggtgttgcagacgatgtaattcacaaaacaaataacgcttaaattgtgttgtttttatactatttAAAAGAATCCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAATCCTTaaatgatgggtattctctaaagcatgcggggcttaaaacctagatgatggattgataggtgcagcaaaccaccgtggca
catatatacctatgtaacaaacctgcacattcagcacatgtatcccaagacttaaagtaaaagtaaaaattaaaaaagatgggtattctatatttatctt
tcatgttacatttttctttgtggggtttctaaataaaacttgtaacatgaatgttttattctcattctgtattttaaaaagaagctgagtaacaaaagga
aaacaaaacaggattggaaaatcaactattttcagggggctttaacaaactgaatatctagaaaggttctagagaacctttatgaaactgtttgtttgga
tgtcttatt UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 60 429 108 NA intron
1473 chr5 116456094 116456399 RIP_Alu_chr5_116_01 0 - pAlu5-116458955 NA NA SINE Alu Yb7 catataccctggaaatttctataatcataatgcatcgattttttaaaaaaaggaaatttctttagtggagaaccttatcatctaattacttctttgtcaa
aatgatatattgacttattaattatgaaatggccccaatcaatgatgatattaatatcaatgtttgttactataatttaaatatcattattctgtgtagt
atcagtaaagtctgtcattggttgaatttgtgttttatattgatattgttctgatttttaattttaaaaatttttaaattaatttattaaaatcttaaat
tagtttaaaaattttatactctgccagtggacacatatagtaacagttgtaaaaagagtaatctggctaggagaaatgctaccctttAAATTGGAGTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTCACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAATTGGAGTATGtcaccgaatggtttgcctttgcatggcctaatgaaagttagcaaaagagaacttggccacatgtgtggccctgtgggaagag
gtaggatgattttatgaaaagccccctgggctgagagccacaactcctaaatcattagttatcagtcatgtatacttgtttgatcagttcattttgtgag
cctcggtttacttattgtaatagagaaataatatttacccttcagaatgagaagctaatgatatgatgcacatggaagggttttgtgaattattaaagcc
atgaaaggatagggagttccttggcatctcagtagaagactagcaatatatgatcacctgtaatccgttaaactctgattctggcagtcgttggctttat
tgcag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1493 chr5 119043056 119043363 RIP_Alu_chr5_119_01 0 - pAlu5-119045917|4754 NA NA SINE Alu Yb9 taactttttaaaaagcaaatatttaagggccagtagaatccacatatcttccatacggatttatctaatgtcaataatctacatttctttgcatcttagg
aagtagtattctcaggctgaatcgcaataagcctccatggtaatcacatcagttatcaataatttcaattctgtggggattttttttagcttagttaact
caaatataaatccccatattaaatattctcaaacactatgttctctggctttatcactagaagaaagttgtaccatgctttaaaatataatgaaatacaa
ttttttaagagtggcatttttagcaccacttttatagagcacttggtgcaggaatcaaaattattagcagtgccttttttgcttgttAAAGAGACTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAGAGACTTCTCacttttggctgatggctgcatctctaaatagattttacactccctgctcagagatggaaaagcacatacagctctcttca
cattcaaataacaatctcttcactcatcaccaccgaagtccaatacccatccagaacctatcaaattaattaccaaagcttttctgctctcaggttctca
cagataaagcatgcctgtgagggcattttacacgttttatcccactattccacaggatagtcttacattccagaatgtacctaaatggacttaaaagttc
ctctcctgtgatcctgtgaattaatcataatgactgccctggggaaaaaagagagtcctcgataggagagatccaaaaagaactgctgcttggtaaaagc
tccaggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1518 chr5 122302252 122302562 RIP_Alu_chr5_122_01 0 + 7013|pAlu5-122305116 NA NA SINE Alu Ya2 agaggaggaccctctccccagtgagtttggacagttcttagctattcatggtcaaaaaaaatcctagattttccaggattctctcttctctcagtttctg
cagctctattaataattttacctattcttataattatataatgaggtctactagcattaatagaatagaaattcacaaatctctcaattttgaatattgt
tggcagccttgttaaaatatttgagacaactttacagggacatagagataaaaatagctttgtggagcagagttttatttgggatacactgtctaatttt
atgtattatcaaggggatagcagctgctagaagtctcctttacttgcccccttgtgattgtattcgatttggcaaaaaggtaactttAAAAGGCAATGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGGCAATGAAatacaaataacaatggggtataaaaataaacataaatctgtaattttgactgtaagattgtgtgctaagaagggttg
aaatgggtcaaaaatttaatcagagtactcaggcttgactgactgctgctgccacatcaacaaccttacccttttattgcagttttggtaccctcgattt
ccatatttgaatcttgtgacatgctttgaatgttagagtttaacataaaatattttccctttaaatgtagttaaatctgttgttacttaattctcttgaa
atatttaactatattacccctccaaaaattagatttgtttattagcaagcatgtatgttgccttgttttaataggtgtttcttaggtttgtttaggagtt
gtagcccctc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1541 chr5 125427898 125428200 RIP_Alu_chr5_125_01 0 - Ya5NBC18 AGACCATCTTTAAGAGGAATACCATGT GAAACGTAAATTTGTTAATAAAGTGGTGAC SINE Alu Ya5 tttcctcatttttacttgctaaacttatgccttcttcaagagttactctctttgctagtgctatgggggcagcattgtctgggtttatgattctggatta
atgccagtgtctatattaataagaaaggaagggtgactctgtcccgatatttagcaggggcagggagttccctcagtttatctgacttgacatggtaaaa
aaaaaaaaatgaatgaacatgttagtatgaatagctataaagttgggagtctctaagcaaggagctccaatacagtgatcaatgtcaacaagaatgttgc
catagcatagaccagtatgctttttaattgatggagaccatctttaagaggaataccatgtggtagtaacaaaggcaacttcagctgAGAAATGAAGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGTTAACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCGTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAATGAAGCTCatagtacaatgcattatattgtacttgctctcttttccctgtgcacatttttttgtgtgtaacatgttctgtttgctttagcggg
tcaccactttattaacaaatttacgtttcctgtttctttaaagaaccactttcaccctgaccacattgctagagtgtcactatgttccctaatcaatttc
tgtaaacacataaccatggggtccatacagcttcaagagtcacatttgacatgccaatcctgctgcatgctcctggctgctttggctgttgtgccacttg
agcagtctcgccatgttcatagggggtttgcattaatagttacagtttttttctgtgcaagtacctctcatcatcttctgtcagtgttttgcttatttgt
tt UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 65 495 180 NA intergenic
1553 chr5 126970245 126970558 RIP_Alu_chr5_126_01 0 - Yb8AC1330 TCCCTAACTCACTTGAAAAGCTG TAGTCATCCAAATGCCACCA SINE Alu Yb8 gtaaatatgtatctataatatgtatatgtgttaggatgcactatgaaatgtacttcttaatatgataacagtaaaaaaagtgtgaaagtcactgatttaa
tatttgtactttcataagcaattagcaggcacccattgtaacagataaaatccaattcttagattaactaaaaaaggaacatcactatacatgtgaacta
atttcaagatatgtgttcaaaaatgtttatgtttattaagaaaaatatgtacttgactacaaagaaaattcttctgacttcttgaagtcaaatccctaac
tcacttgaaaagctgaggagtaaaaccaaacaaagacatacacaaaaactcttagttaccttaaataaacttttaaactaggatttAAGATGACTGTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGCGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGATGACTGTCCTttggtggcatttggatgactaatttgaaaggtttttgttaagctgaaatgtagacatatttattaggatttta
aaatcttaaaagaggccttttcagggctcatttcgttatgacaacaaccttgttgagccaccagtgagaggaatgacatctccggcatcttaacgggtga
cgtcaatgatgggtacttgatggaggctgtcctggtcccaacccttgttctggaaccttcagtggctgcctgggtgaaaattctgcaaagtcagactgtg
gagggagagcagcacagaagttctgtggaagtccacaccagcagagtgagattctagcatgggggctgctctaggactgaatggaaaatctaagaacttg
catatgcagattt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 456 129 NA intergenic
1564 chr5 128342754 128342755 RIP_Alu_chr5_128_01 0 + 238115 NA NA SINE Alu Yb8 aggtataacttaaaaatagaaggcaaaatcattataaagccaataatagaatgcatacatgatgatggtcccataagattgtaatactctattgtacctt
ttctaagtttaaatatatttaaatacacaaacacatattactgtgttagaattgcctgcagtgttttcagtacagtaacatggtgtacaggtttgtagcc
taggagcgataggctatatatcatacagcctaggtgtgtagtgggctatatcacttaggtttgatcaatgattatcattcagtcttgtgtgaattaaatg
taaagaactcaacagaataccaggatcataaagtatattcaacaaatggatgcaatcattatttttaactgcataatggcagagacAAGAAGTCACTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGATTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAAGTCACTTTTctcaggtctcttcatttgagatttgttgtatggagggaaacccacgtagtgtgttacacaaccttagtgagttggc
tttaaacagctttcttgtcctctccagtagcagtacatccataactacttcccaaccctcagtggccaaggttggaatgctctcagacacaagtttggag
tgaggtcgttagctcttctctggccaaaaagaagaaggttcttctactgttaataacaaagaggtcatgagggagataaccctgatggggtctgagtctt
gcagaaatactaccttagtattcactgcgttttaaaaatatatatatcatttacttactaatgagtctgtctgtagattgctttggtctgcatttactct
tctaatttca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1591 chr5 131988138 131988491 RIP_Alu_chr5_131_01 0 + Ya5NBC1 GGAATAGGAGATCCAGTAACTTC GTAGTGTTCAGAGACAGCACTTTA SINE Alu Ya5 ttaacattacaatgttccctgggtccaaaatggctcatagaattatatgcctgcaccaaatgagaacttttgttttttaacttctttgaatattgccatc
tctcctagatattagatccagcagtttaaagtggttagtcttggaatttaaggtgctgaaacaagaacataagcaaaacttaaggaattcttgcccagta
gactacacatacatatatttgttttttgttttttggttttttttgcctttaataattctttttagtcttctcagctacctcatttatgcctttaggggac
tttttagtttttcttagttctttaacaacagatgctgtgtatctaatagacttatcaaacattcattgagcattaaggaataggagatccagtAACTTCT
AGCAAGGATATTATAGTTTATTTGAAGAGACACAAATCAAAACAGATTTTTGTTGGTAAAAACCTATTTTGCCAGGCTTAGTGCTTACGCCTGTAATCCT
AGCACTTTGGGAGTCCAAAGTGGGTGGATTGCTTAAGTCCAGGAGTTTGAGACCAACCTGGGCAACATGGCGAAACCCCATCACTACAAAAAAATACAAA
AATTATCTGGGCGTGGTAGCACACACCTGTAATCCCAGCTACTCAGAAGCCCGTGGCGGGTTGCAATGAGCCAAGATTGTGCCAGTGCACTCCAGCGTGG
GTGACAGAAAGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAATCACCAAAACTTCTttttggaataagataagttggttgtgatggaaaaataaaaa
tggatattaaaagcaagacattggactttgtataaaagtccaacatgataagttttaccttttttaaaaagcctcagaagtccataatacatggttaaaa
gtgctgtctctgaacactacagatgtccagattttgaattctttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcg
ggatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactacgcccg
gctaattttttgtatttttagtagagacggggtttcaccgttttagccggga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 544 185 NA intron
1605 chr5 133790521 133790816 RIP_Alu_chr5_133_01 0 + Ya5ACA1400|pAlu5-133793787 AAACTGAAAATGCAGGTGCC TTCCTCTGAAAGGCTGGAAA SINE Alu Ya5 ccaccgcgcccagccttccagctggtccttatttatcctccagcactttcagctgttctgttccgattttgatccatgcaacgcgggggatggggggaca
atccaacaggtgaatcctctcccacccccagaaatggctcaaggagacctcctagtgggttacaggaccactgagccatggaccccagggtcacctttct
tcccaccacagtcaagctcagcacataacttaaatgcatagtggtcccggaagtgtcaaggagaacaaaatgcccatttttttccctccatacacagcaa
aactgttctaatacagccaaatgaactggagaagcagttttattcttgcccttcctgccgaggaaaaactgaaaatgcaggtgccgagaaaatACTAAAT
GGAGGCCAGAGGCGGTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAA
CATGTTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCG
CTTGAACCCGGCAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAACCTAA
GTagagagtgctcttggagcagggtttccagcctttcagaggaaagttggaaaacgctaaaagttttcaaactttgggatcttcagctcttacagaagta
tctaaatcccagctacttgggaggatcccttgagcccagaagtccaaggccagcctaggcaatgtggcaagacttgtctctaaaaaaaaaaacaaaacaa
acaaacaaacaaacaaaaaaacgtaaattctaggttgggcacggtggctcacgcctgtaatcccagcactttggaagaccaaggcaggtagtttacttga
ggtcaggggttcgagaccaacctggccaacatggtgaaaccccctctctactaaaaatacaaaaattagccggacatggtggtgcgttgcctata UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 677 379 NA intron
1617 chr5 135347081 135347082 RIP_Alu_chr5_135_01 0 - pAlu5-130120284 NA NA SINE Alu Ye5 gatatagatcaatggaacagaacagagtcctcagaaataacgccacatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaa
aggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattc
aagatggattaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttc
atgtctaaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatgggttctaattaaactaaagagcttctgcacagcaaAAGAAACTACCATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAGAAAAAAA
AAAAAAAAAAAAAAAAGAAACTACCATCAGgagtgaacaggcaacctacaaaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatc
cagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaaaagaagac
atttatgcagccaaaaaacacatgaaaagatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctctcatcagtta
gaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttca
accattgtggaagtc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1663 chr5 141403953 141403954 RIP_Alu_chr5_141_01 0 - pAlu5-119142738 NA NA SINE Alu Yf1 tgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaa
gaaagtcattggtagcttgatggggatggcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcat
ggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattc
ctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttgttggtgtatAAGAATGCTTGTGATTT
GGCCGGGCACGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCACGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAAGCACACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAA
AAAGAATGCTTGTGATTTttgtacattgattttgtatcctgagactttgctaaagttgcttatcagcttaaggagattttgggctgagacaatggggatt
tctagatatacaatcatgtcatctgcaaacagggacaatttgactttctcttttcctaattgaataccctttatttccttctcctgcctaattgccctgg
ccagaacttccaacactatgttgaataggagcggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcag
tatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttattgagagtttttagcatgaatggttgt
t Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1670 chr5 142335196 142335197 RIP_Alu_chr5_142_02 0 + 16830 NA NA SINE Alu Ya5 atcgtttcaaatctccattggccctcccctacagttctgaaagattctgtcttacacatggggtggtcgaggaggggaggcaggtttgtaatggaaatga
tggtagactgagcaaggagatgtagcatctgcttcccttgtgctgctaaacggcatggacttggaaaagctgctcacccctcctaggcctgtggttctgc
agctttaatataaaaggggtaggactagagaactgcgtctacagtagtgattttcaaattatgtttcaagaatctttgggactctacagttgctgaggtg
aaagaaacctttctcccagcttcttccagagctgccctgctttcatcttgctggtgtactggggtttcacattcaatttttatcAAAAATAGACAGACAG
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAGACA
GACAGactaatagttttaaaaccatcagattaaatgacctgaatgtggttattgtttcttacacatagttagctacttaataaatagttttaattcaact
tagctttgatcatttagcaaactataaagatgatccctgaaagtttagtcttagctttgttctttagatgtttcttgtgtgtatcatctcccaatcgaca
gtcagtaaacttcatcattcccagtacctaagattgcagtgtgtatacttgtgtatactttattacccagcgtccctgagattacttaataaaggatttt
ataggataaaagtagctccagtctttgtgtcctgggttgcctggagagtattaagaaaacataataaaattggttgaggtgtaccatac Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1675 chr5 142915573 142915871 RIP_Alu_chr5_142_01 0 + Ya5ACA1410 ACCAAGCCTCCTTCTATGGT CTCCTTTTCCTGCTGCATGT SINE Alu Ya5 aggcaaagtgcaaggttgtccattgcatcatgatagcaatattgaaaagctgaaaaacaatctaagtgtccatcaaaaggaggcttgctaaaataattat
catataacttaacaatggaatgtcagtaacccattcaacagagtgaagtagtgtaacgttcagtatttcattgtacaataaacaatgatttttttaagtg
aaaagtttattgcttttaaaacaccttttattttaaaatatttgtgtactcactagatgttaaaaaataatacaataatcctacgtatcttttaccaagc
ctccttctatggtacatttaaaatatatcttaaagaaaaatataataggttgcagaatggaaaatatggtaggatcctatttatgtAAAAATAAAAGTAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCGGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAAA
AAATAAAAGTATaccaaactgttgacactggatatctctgtggaatggaaaataacatgcagcaggaaaaggaggaaaatgagagattttaatttttttc
aagactgagtctctctctgtcacccaggctggagtgcagttgcgcgatctcagctcactgtaacctccacctcccgggttcaagtggttctcctgcttca
gcctcctgagtagctgggactacaggcacacaccaccacacttggctaattttttgtatttttagtggagacggggtgtcaccatgttggtcaggctggt
ctcgaactcctgacctcgtgatccgcccctcttggcctcccaaagtgctgggactacagatgtgagccaccatgcccagccttaattttcttaattta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 481 169 NA intergenic
1678 chr5 143333843 143334002 RIP_Alu_chr5_143_01 0 + Yb8NBC547|pAlu5-143336706 GCCCATGCTCAGTCTAAACC GATTGGAGCCCTTGTCTACG SINE Alu Yb8 ctcctgtctcagccttccaagtagctgggactataggcacctgccactacgcctggctaattttttgtatttttattagagacgggggtttcaccacgtt
agccaggatggtcttgatttcctgacctcctgatccacccgcctctgcctcccaaagtgctgggattacaggcatgagccaccgcgcccagccaactgcc
agtctctttcaacttgataggtgacaaagtttggaagcaactttcttaattacatagactttacatatcttttgtaaaaatgctagacatgctgtgcttc
tactctgacagtcagtaaaacagtgctgattggagcccttgtctacgacaaaaaaataaatgttcctgcttcttcttagcaaatAGAATCATGGCCTGGA
CAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTC
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAATCATGGCCTGGAaatcgagaaatttgcatttttagct
tctgctgtctcgccaaccatttgtgagacacagagtgaaccacagttgctctgggtcacagatttggcaaaaataaactgagaggtttagcctggatagt
ctcacggcagcacacatggtggtttagactgagcatgggctccgaagtcagacatagttggattctaatcccactcactctaccacatactagttacatt
accttggacaataaccatctatcttcaactttcatttcttcaccagtaaaatgaaaatgacatctattttacagcatttttgtatggattaaatgagata
atgtacataaaagcacttagcacagttcttggcaaattgtaagaggtcaatctagttaa UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening|Genome comparison NA 60 413 238 NA intergenic
1688 chr5 144577237 144577535 RIP_Alu_chr5_144_01 0 + Ya5NBC16 CTTAACCAAAATAGTGGACGAGGTT CAGAAGTATTTACTACTCGAACAGTGAGC SINE Alu Ya5 gtgaaaataagtatattatgcatggttgactatcactttcataaaataaaaatttatttaaaaaagaattcactcctataaatctcttacttacaatcag
aaaacaaaatccttttaattatatgtctatgtcatcaattcagggatatgcatgttccttacatttcacttagtttaatgcactagtattaattacaatt
taagattaactcattctccacaaaatcaaaggtctgaaagagaataattttatttatttgcttcatattatcagaagtatttactactcgaacagtgagc
aaaatggtttactataaggttgaggctattattcatttagaattgaggtgaagatacaatactttgtaggcaaaaaaagcaatttagtAAGACTGTTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGACGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GACTGTTCCAtctcatttagatttcaataatgtatttttattaaataatgggggaaaaaaacactgtgaatgaaaaggcatcaataacctcgtccactat
tttggttaagggaattcaaaatgtaatttttccccaagattgctgttaacatctgccatttatagtcttttagcatggtgctctatgatttttaatgatt
tgacttcaaaaaaacaacagttactcttttctaatcagaaaagcaatacatatttttgttacacaatttggaaaatgcaaaaactattaagaagaaaatg
aaaatcgcctgttatcctatcaccctgaggagtttttgtagcatttcatgcatatgtatgtgtactttgccacacaaggatcatgctgcatagcagcc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 65 539 229 NA intergenic
1701 chr5 146349819 146349820 RIP_Alu_chr5_146_01 0 + pAlu5-146352784 NA NA SINE Alu Yb7 aggtttttctctaagatctagaacaacacaagaatacccacgtttaccactttatttgacatagtactgaatattctagccaaagcaagtaggcaagaga
aagaaacaaagggcacccaaattttaaaaagtggaagtcatattgtccctgtttgcagatgacatgaccatatacatagaaaatcctaaagactccacta
aaaaactattagaattaataactgagtatagtaaagttgcaggatacaaaatcaacacaaaaatcagtagcatttctatatgctaataatgaactatctg
aaaaagaaatcaagaaagcaattctattacaatagctacagaaatgctagacataataaccaaggaggtgaaatatctctacaattaaAACCATAAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACCATAAAACAttaatgaaagaagctgaaaaagacaaataaatgaaaagacatcctgtgttcatggattggaagtattaatattgttaaaatg
tccatattatccaaagtaatcttcaaattcagtgcaatttctgtcaaaataccaatgatattcttctcataaatagaaaaacaatcttaaaattcatgtg
gaagtgcaaaagaccctgaattaccaaataaattttgagcaaaagcaacaaagctgcaagcattacactacctgacttcaaaatatactataaagctata
gtaaccaaaacagcatggtacttatagaaaaacagaccaatggaacaaaatagaaagcccagaaagaaatccatgcacttttaaccaactgttttttgcc
aaaggt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1714 chr5 148076973 148076974 RIP_Alu_chr5_148_01 0 + pAlu5-148079938 NA NA SINE Alu Yb7 gcactcaatactaacctgtgaaaacagccgccctgggctgtaccctgcagagccacaggggtggagccgtccaaggccttgggagcccatcccttgcatc
tgtgtgccctgaatacgacacatggagtcaaaggggatttttatggagctttaaaatttagtgacttgcctgctggatttcagacttgcatggggcctgt
agctcctttgttttggccaatttctttcatttgaaatgggagcatttacccaacgcctgtacccctattgtattttggaagaaactaacttacttttgat
tttacaggctcataggtgggagggacttactttgtctcagatgagactttggactgtggacttctgagttaatgctgaaattagttAAGACTGGCAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGACTGGCAACTGttgaaaagggttaattgtattttgcaacgtgagaaggacatgagatttgggagaagcaaggggtagaattatat
tgtttggatttgtgtccctgcacaaatctcatgtcatactgaaggaaggacctggtaagaggtaacgggatcatgagggcgatttcccccttgctgttct
tgtgatagtgagttctcaggagatctgatggtttaaaagtatgtgacacttcctccttcactctctgtctctcctgctctgccatgtgaagaaggtgctt
gctttcccttcaccttctgcctctcctgctctgccatgtgaagaaggtgcttgcttccccttcaccttctgccatgattgtaaatttcccaaggcctccc
agtcatgcttcc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1769 chr5 155223202 155223203 RIP_Alu_chr5_155_01 0 + pAlu5-155226167 NA NA SINE Alu Ya5 taatggccgcccctgcagcctggcttcccacctggctgcagtttgaggcagcaggttctcattatgctttattcttttttcaagaatgtgttcttgaaat
tgaattagatttgcttccttcatagcatgtgttgacttttaaatgacttcctggtgggttttcctcaagatcttcaaccacgatgcagaggttctcaggg
taaaatgaagtatccaacccaatgagaaaacaatgtattatttccttaccttcaggtttaactggaagatgctgcattttgagcagtcatgatctttatt
tccccaaatgcttttgctttccctgctgggatggcctaagtcaattaccgtcctctgcctgaagtattattagtcttcattcccagaacAAAGAAAATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAATTCataccatcatccaggaaaattgccaatcttcttgaaacggttgcattttccatgggtactgaaatgtactctccatgggagat
ttggagatgaaggtcaggattccctatagatgtatcccagggatgttgctcagaaagatatctctttcctttaagtacttgagaaggaatctgaattggt
aatgtttctattgtttttcatttgtttattcattcattaatacattcaacagatatatattgaccatctgctgtgtgccacgcacataatagaaaaaaca
gacaaggaccctactgtcatggaaactgcatttcagtaggggggacagacaaataaacaatcaaataggaagtacattagatagtggtaactgctaagga
gaggag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1785 chr5 157385610 157385611 RIP_Alu_chr5_157_01 0 - Yb8NBC294 CCGAGATTTTTCCCACCATA CCAAAGAAGGGCTTGAATGA SINE Alu Yb8 agtagcactgggcctatgcccagatctgttgctttaggacaataaatcatttctattttcaccccctccccacctccatccccatttatagaaaacagcc
ttgtgacctgactggtaactttagggccagccattggcaaaactgggaggcccaagataaggagccttcctctacctgtgaacagacccctcttcctgcc
cagaataaggcacacacatctttatactgccctgagccttctgccgtaattacccaacccatctcactctccaggacagcacccaaagtaccgagatttt
tcccaccataatgcccctatcttgagtgttatttttcaacaaggctctgtttcctgctaaagagtaaatggttaatctaattttaaAAATAAATAAATAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
TAAATAAATAAATAAATAAATAAATACcagcactcaagtgtcaataaaatgccaactataatgacgtgagaggaagacttattttctactgttttattta
aaaaaaaaaaaaaaaaaccctccaaaccctctcttcattcaagcccttctttggttgaattagggtgggtagctgagactctcttgttcacctctccacc
ctcaatgcctagaacagaccctggcacacagtaggctcccaggactatctgtgaatgagtaagagcccaccccactttccatttcctcccccacctgaca
gatcctgagcgggaccttgaaagaagagcttgcagccaatgaagttgattcatcaacagattcatcaattgatgaaatagattaccctagaatcttgatg
ccaaagtccactt Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 564 237 NA intergenic
1794 chr5 158524982 158525314 RIP_Alu_chr5_158_01 0 + pAlu5-158527851 NA NA SINE Alu Ya5 ttgagaattaggacgcttttcctttccttttttaattcccagtacactgaattgaattcatcacaatccttgattgacgatgtactgtcatcatttgtct
gtgcatgtccctccttttatttagtcagtaatctaattaactattgtcaataatgtaacaagcatttatgaacccacttcccacatacaggtgaaggcct
ggagaataaaccacatctaacgacaggggcaggcctgcctatatataccatgttctcgcccctctgccccacgaaaccactatcttgaatcctgtgtgct
tcattctcttccctgcttccctttttatagtttggttttatctatatgtatttctaagtattacaaattttaaaattttgtttttaacatAAAAATAATA
TCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAatatcctacattatcatctttttggatttacttttttacctcgtgctgctatgatcat
tcatactgatttgtgggtcactatttttaacatagcactgtgactattaccacattttatcatctactttcttgttgcattggcatctgggttgttccca
ggattctggtgaggtgaactgttctacgaacattcttctacatgtctcctactgtacacatgcaagagtctttgaatatatacctatgaggagatcatgc
caaactctcttccaaagtgactacaccactttacactctcatcagtaccatgggatatcctgtggagctgcaacttcccccatcataggtattggcagat
tttttccctcccctttctatctccttcctttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1808 chr5 160363892 160364214 RIP_Alu_chr5_160_01 0 - pAlu5-160366767 NA NA SINE Alu Ya5 gtgaagctaccatagaagttcaaagattggtcagcctggtggtccttgaccccagcaaagccacaccataccctccacaaacacctgcagcagaggccac
tgagacacttatagacaccgtgaacattgaatacagccataaaaaaaaatcacataaagagtatactactgcacccacccagaaccaagtcaaaacatcc
taccaaacatactatggacacatatacaggaaaaagtcttttcctatgaaagctacttcataaaattagaagctgttggtccactaagtacatagatatc
aatgtagaaacaaaagaagaaaaaaaagaaaaagaaaacatggcactttcaaaggaacagaataattctccagtaacagatcccaataaaaAAGAAATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAATCTatgaaatgtcagaaaataaatctgaaataatgatcttaaggaaactctgtaggatataatacaatacaa
agaaacaattcaacaaaatcagaaaaaaaaatcatcatctgagtgatatattcagcaaagggatattataaaaaataaccaaatggaaatatttaaacta
aataatttaatgaataaaataaaaaatgaaatcaagagcttcaataatagagtagagcatgcagaagaaagaatttctgaacttgaaaaaggtgttttga
aataacccagtcagacaaaaaagaaataaatttattttaataaatgaagaaagcctatgagacttatgggacaacattaagcaaacacattttacattgt
ggaagtttcagagggtgaacag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1822 chr5 162164529 162164530 RIP_Alu_chr5_162_01 0 - pAlu5-162167486 NA NA SINE Alu Yc1 gaaagaggaaaaaatacagaaatagggaaaacaaatttcaaagacagagatattgaacagcatacctatcttaaatctggtgctggaagaaaggttgtga
atatatttttaaaagtagtacaacttacttaacaatgatcctgggtttccatgagttgtattttccatactacccaaaataagcatctctgataagcaag
acttagtgctttagttaacattacatgtttaaaataaaaaaaaaaaaataagaaatatacttgttttaagttaaataagtttttctctacaattctcatt
cttttgctttatataatcatgataattattgctgatctctctgttgctatcaaataccacccctggaaagtttaggattgttccttAAAATGTACAGTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATGTACataaaatctgagaaaatctactttggttagaatacacatgtgaggaatgggctaagtgagtaagctgtagcaagaagagatggtttcctg
gaaatagaagcagaggaagcttttgtgattaaacataaatcctttgagtattctattagttagggggccattttttgtaaataatgctctcttttgaaga
tgcaaagccaataaaacttttttttatttttttttattatactttaagttttagggtacatgtgcacaacgtgcaggttagttacatatgtatacatgtg
ccatgttggtgtgctgcacccattaactagtcatttaacattaggtatatctcctaatgctatccctccccccaccccccaccccacaacaggccc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1838 chr5 164298890 164299186 RIP_Alu_chr5_164_01 0 - pAlu5-164301750|3812|Ya5ACA1436 GCATGGAATCAGGACAAGTA TCACATGGTGAAAGGTGCTA SINE Alu Ya5 atagatttgaagcttgaagacatctttgtttctctgtacatatgtataattacttgaaaaaatatttagtttttatcttaaccaaagcccattatctagt
tggtagttatcttgtttgctctagatgtattacctgagtggcatggaatcaggacaagtatgtaatttgtagagccccctgttcaaaaataattaggaat
ctcaagacagtaacagtagagcattaaaccaagtgtggggtttgttatggtctgaatgttcgtgtcccctgccagactcatatattaaaatcttaccctg
ccaggtgatagtattaggaggtgggacttttggggaggtaattaggtcatgatggtagagccctcatgattgggattagtgttcttAAAAAGACCTTAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGACCTTAGAgagttagctagcacctttcaccatgtgaagacatagcaagaaagcactatctatgaaccagaaagcaggcccccatcagacagtgaatct
gctggtgccttgaacttggacttcccagcctccagaactgtgagaaataaatgtttgttgtgtataagacactcaacttgtggtattttgttacaatggc
ccgaacgcactaagactgggtccttttgagcataaggcccttcacaggatttgtgcccatgaatccagtactgtatggaattcattctaccaacaccatt
gctccttttcagcctgtattgaagttcctctctttattgatctctttatgttgaggtgcctaggaccacaggccttaccctctgttctattcacac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 55 598 288 NA intergenic
1852 chr5 166083341 166083646 RIP_Alu_chr5_166_01 0 - Yb8AC1283 TGAGAAGCATTGGTTTAACTGTTG AAGGTCAGACTTACCAGAACATTG SINE Alu Yb8 ttgctgagtcctgcactgtaccacagcggttgaaagaattgattctggagtttgtcctctatgtttatatcttgcttgcaccatttaataactttgtgac
ctaagctaacttactttggttttctcatttgtaaagtggtggtaataaccgctcctgtctcataaggttgttgtaaggataaaaagaaaacaatttatgt
aaagcccttattccttcgtaggaggaataaattggtgtttatagatatatagcatgtatatgtaaaatatttagtattcaacattggtttttagattttt
tatagcacaattttacacattaaaacttgagaagcattggtttaactgttgaagcaaaaatgtttatatgataaataatttttccAAAGAAGTAAACATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAAGTAAACATCacaatgttctggtaagtctgaccttatacataaggcataaactatgtaagtgtactaaataaataattgtactgtagtgc
ctccttatacgcaggtgagtatatcccaagaccccccagtggatgcttgaaactgtggatactactgaacccagttgctgtccatcaaaacgcatttatg
ttcatgtcttcatccataaatttaataacctttctatcttaactaagcacttgtcacgcactgtggctgtaagttttacagtttgaggtgcgacagcaaa
actgggatgagtttcttttccttcttcacagtttctcggatagatttgttcttatcatagatcttagtaaccctttttgacttttttttcctttaagtta
agaac UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 418 98 NA intergenic
1869 chr5 168327023 168327321 RIP_Alu_chr5_168_01 0 - Ya5ACA1370 TCATCTTTTCTGCCAGCCTT CTAAGCTGCCTTGCATTCCT SINE Alu Ya5 aaggaatggcatatttaatgggaggggagagataaatcattcttaatctttatgttcagggaggagaatggtaaggaatcttaaaaacccactctccttt
ccaaggcctggggagagccatgaggaaggaatttgaatgcctgccagagcaggtgagcaaagcttgggaagagaatctggtgcaggcacgaaagtgctag
caggaggtacgagagtgtctgaaatctctactggagagtgcagacatcatcttttctgccagccttgcatggtgggaagtagagtgggaacccgaggctt
tattcttcctgcagatgaaggctgaccacaccagatattgtgattgtagagggacaggtgcaatgaaaggaatgaaaaatccctcAAAGATTTGAGATGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAGATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGATTTGAGATGGcagtgccagaggaatgcaaggcagcttagaaaaattatgacgcaagtgttatatatttactgtagagaagttacatgagacagagaa
gccaaaaaagaaaaataatttaaactcatgattgttcacctagaaataatcactagcaatattttggtgcaattttaccccagtgtgtgtctctcttata
tacacatgcacacacacatttatagcattggattatactatatgtactctttggaaacctaccttctcactttaaaaatatatacagagcatttttccaa
attcataaataacatcctttttaatggctattgttcttccattgtagtaggtgggccatgacaactagctcctacagttgggaaatttaggtggtttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 496 183 NA intron
1871 chr5 168675117 168675338 RIP_Alu_chr5_168_02 0 + pAlu5-168677982 NA NA SINE Alu Ya5a2 ataaaggagtcgattcatcaagaggacacacaaatcctaaatgagtatgcatccaacaacagagcttcaaaacacataaaaacacataaaaagagaaatt
agtagaacaaaaaggacaaatagacatattcagaattatagttggagatgttaacactcctattgcagtaattattggaacaagtagacatgaaatcggt
aagaatctatatgagagacttgcaaaacactagcaatcaaataagcctaactgacatttggagaactttctacccagcaacagaagaatagacattattt
tcaagtctacttggaagatccagataaataatagtctgaagcacaggacaagtttcaataaatttaaaaagagtgaaattatataaaAATGTTCCCTGAC
TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAG
GCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAA
AAAAAAAAAAAAAAAAAAAAAAATGTTCCCTGACcaaaacagaattgaactagaaatcaaaaacacaaagatatgtggaaaatcaccaaaaattttgaaa
attaaatcatattcttctaaataaatcatggtcaaaggagaaatcacaagagagattagaaaatattttgaatggaatgaaaattaaaatataatatttt
aacattcgtggactgaagctaagatagtatttagagggaacattaaggcattaaatgtttatattagaaaagaaggaaggtttaaaatcaataacctaag
cttccacattcagaaaccagataaagaagagaatgttaaatccaaagtaaacaaagtaaggaaagaataaagagcagaaatcactaaaattgaaacagaa
atgcaatggttttgaaaagca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1883 chr5 170133917 170133918 RIP_Alu_chr5_170_02 0 + pAlu5-170136882 NA NA SINE Alu Ya5 ggcactggaatacagcagggagaaaagagataaagaccctgcccatgtgaagcttgtgcactacggggaggagaccaatcaataataaacataacaaatg
actcgactgtggaggctgctagaaggagatgaggcagggaaaaatgagaagagcagggtatgggggacagaatggctgtgatggcgaatattggaatatg
aaatgtgactgacctgtagaggcagttagggaaatgctgattttgcaaatgagatcctgtcatttccaacatggatggaactgggggacatgttagatga
aataacccaggcacagaaaagctcacttcccaggttctcattcatttgtgggagctaaaaattaaaacaatttaattcacggggatAGAAAAGTAGAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAAGTAGAATGatggttaacagaggccgggaagggtagtggggttggggggatgtagggatgattaacaggtacaaaatatgcaatg
aaagcaatgcaatgaatatgatctgttattgatagcagaacaaggtgactacagacagcaataatttgttgtacattttcacataactgagggagtacaa
ttggaatgtttgtaccacaaggacatgatgaatgcttgaggttatggagaccccatttaccctaatataattattacacattgcatgtctgtatcaaaat
atctcatgtatcccatcaatatatatatacctactatgtgccataattttttaaataagccatgctgaaaagggctcaatgaagtgacaaacagaatgaa
ttattttccc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1888 chr5 170790115 170790422 RIP_Alu_chr5_170_01 0 + 13564 NA NA SINE Alu Yb8 ccagcactttgggaggccgaggcgggtggatcatgaggtcaggagttcaagaccagcctggccaagatggtgaaatcccgtctctactaaaaactataaa
aattcactgggcgcggtggcaggcgcctgtaatcccagctactccagaggctgaggcgggagaatcacatgaacccaggtggcggagattgcagtgagcc
aagatcacgccattgcactccagcctgggcaacagagtaagactgtgtctcaaaaaaaaaaaaaaaaaaattgtaccaactcatagggtttgttctgggc
attacataggaagacatccctcaagagattcctagcacagaggaagtgctcaacacacaatgcctgattaagaaacaaaactaaactAAAGAAAAAAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGTAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAAAAAAGAGtaatgattgttactaatataatctttttctgagataaatattatcaacagtccccattttgctgatgggaaaactgagag
ctaaagaagtcgaataagtgggttgactgggggtgaagccaggtgacagctaaggtcagccagtgctggttcctgtgtgagtgttgcgtgtgtggtgtgt
gtacataggtgatgtgtgatgtgacgcacatttgtggaaggtggaaatgggggccaggaagaaagaggaaaatcccaaacatgcttttcagccatgagtg
ggctggagaggctaaaatcttcaagccagagggagtgatggaggctgctggatgctctggtgtgaggtggtaccttggttgatctctggaagctggtact
aggctgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1902 chr5 172632853 172633165 RIP_Alu_chr5_172_01 0 + pAlu5-172635719 NA NA SINE Alu Yg6 cataatcaacagtcggcctcataagacaccgtaggctctcgatagctgggtgaaggcaggaaggcagctcggctccactaagacatctagggccccaggc
tcctcctatcttgttggtcaccagcctgtgtgatgggagaaagagagatagttgagggtaggcaatttcctttccaggaagagatgtgggaatcagacac
atcaagtcttctcactgtcattggtgaggacttggtcagggaccacccctaactgcaaagaggtctgggaaatgtaatctctgctggggcagccaggatg
cagcctggggttttattattaaaaagaaggggaaaatgagactgggggaaaatgaaagtcttcggccacggggacttttaaaataaAAGAAGGGCTAGAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACG
GTGAAACCCCGTCTCTACTAAAAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGGCAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAGGGCTAGAAattgttgactgtaccagactatcttgcagtcttttattttagctaaactcatacaactctgttactatgggaat
aattgaaatgctatagtagtaatggtattattataatagcattatctctgttttcctgtagttatcactcaataaactgccttctctcaggtgagcactc
agttgtaacatccaattattcgatttggcagtttgtcaaatgacatccctgtcatatactttcttaggtgctgggtgcttacaaaaagggcaaaggatag
agccgctgctccccagacgactcaaaatgactttcatgtggaacacaggaggagtgagaagggcctcccatttatttaccatctactaagacgttgtgtc
cctgtcacgtac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1909 chr5 173539713 173540019 RIP_Alu_chr5_173_01 0 + Yb8AC1286 TGATTTTGTGCAGAGCCTTG TATGGCCTCATTCCTTTTGC SINE Alu Yb8 gagtttgcaacaattgctttagggcttaaattgcaagaacaataatagatgcattttgaaacaggcatcgtaaatgggcatagctggcaaaatacagcag
ctccttgggaggtcaaagccatatcgactggcaaccttttgatcaggaaaaaaccctagtgcaaattggtgacgatttccaaccagataagcagcaaccc
ctgtggcctggaccatccatgaccttgagctcccgggaacagcactctgtgggctgtcagagcaaatatgaacaccgtacaaaaacaggggagaggactg
aggtgtcaggggaagtcgcctcggtcatctgttcagttctgtttatggtccaagtgattttgtgcagagccttgcaaagaagatttAAAAGAACTCGATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGGGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCGGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAA
AAAAAAAAAAGAACTCGATGaaaacgtttttgcaccataaaacacctttcctgtcggagtggcaaaaggaatgaggccataaaaatgctgttccagccag
gtctgcaggtgaatttcagtccctgaataaacattctctctttcatcagggacaatggtgagaaaaatacaaaacaaaacaaaacaaaacctctttaaag
agctgtgaatgtactaggtgctcatctcttccttacaaccctgcggttgtgggggatctgattcccattttgcagatgaataaactgaggctgagggagg
ggaagtctcttgttcaagatcacacagctgggacgtagcaaaaccaggatggaactttaccagttactgggagggatggagcctttgacttgcccactgg
tcccca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 427 107 NA intergenic
1917 chr5 174693411 174693412 RIP_Alu_chr5_174_01 0 + 2684 CAGCGGGCAGAGGTTGCAATGAGC CTCAAGAGATTCTGGTTCAGAAGTAC SINE Alu Y ggattttcagattcagctcgtctaagatggggggaaaggggccaggcatggtggttcacgcctgtaatcccagcactttgggaggccaaggcgggtgaat
cacctgaggtgaggatttcgagacctgcctggtcaacatggcaaaaccccgtctctactaaaaatataaaaattagccaggtgtgggggcatgcgcctgt
agtcccagctacttgggaggctgaggcaggagaactgcttgaacccagcgggcagaggttgcaatgagctgaggtggagccacttcactccagactggca
gaaaaagtgagactccgtctcaaaatgaataaataaataaatagataaataaataaaatggggggaaaggggagtgaacttgttAAAAATGCCAATTTCT
NNNNNNNNNNAAAAATGCCAATTTCTgagtccaaatctggtacttctgaaccagaatctcttgaggtgggtccagtatctgcatcactaaaaaagctcct
caaatgcattttatgaacagattattacacacaaccccgccctccagagctcatggtccagcactggtagcagacaagggagcaaggaccatgcccatgg
atatggccatgacaggacagcaatgagaacctatccccagggccagcccaggccagagccaggaaggacctccaagaggaagtgatcttaagcggagcct
gaacagggataggcaccaaccaggcagagtgatgagagagtgtctgccatctgccaggggcagaaggagatgtggtacatttggggaaaggaaaagaact
ctgagagtcc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA promoter
1935 chr5 177061522 177061814 RIP_Alu_chr5_177_01 0 - Yi6AH63 AGTAGTGATGTGGACAGTGAAGG ACCAGATAGCCTAAATCATCACTC SINE Alu Yi6 catggtgaaggtctctgaaatgtcttctatgcttttcccccattgtcttggctattagcacttggcacctttttacgtatgcaaatttctgcagcctgct
tgaattcatcccctgaaaatggccttttctttccaggctgcaaaatttccaaacttttacactctgcttcccctttaaatataagttccaactttaggtc
atttctttgctcatgcatatgagtgtaggttgttagaagcaactgggtcacatcttgaatgctgtgctgcttagaaatttcttccaccagatagcctaaa
tcatcactctcaagttcaaagttccacagatccctatggcaggggcacaacgcagctatgcacccaggttctttgctaaggtataacAAAAGTGACCTTT
GGCCAGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTGTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAGTGA
CCTTTgctccagttcccatcaagttcctcatttgcatttgagacctcatcagcctggccttcactgtccacatcactactggcattttgatctaaccatt
caaccagtctctaagaagttccaagctttccctcatcttcctgtcgttttctgagccctccacattcttgcaacctctgcctgttacccagttccaaagc
tgcttccacattttcagctatctttacagtaatgccccactccttggtaccaattttctgtattagtctgttcttgtattgctataaagaaatacctcag
agtaggtaattttatttattttttaaaatttatctatttatttttgagacagtctcactctgtcacccaggctggagtgcagtggcatgatc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 55 494 190 NA intergenic
1937 chr5 177313970 177314265 RIP_Alu_chr5_177_02 0 - pAlu5-177449513 NA NA SINE Alu Yb3a1 aggtgtggtctcctttagtaggtattacccaggggttttccaaagtagttgtgctattttacattcccaatagtatatgaagtttcagttactccacatt
cttgcccaaacttggtatcaacagtgtttttaattttagccattctggtaggtgtaatattgatttctcactgtggtttaaatttgatggcttatgaggc
tgagcatgttttaaatgctttttggccatttggatgttcatttgctctttcctctccctccttccctccctcctccctccctcccccctcctccctccct
ttcttctttcccttttgtgtccctcttcatttctttcacccattgtcctattggtctgccagcttttttcttaattttttaaaaaatttatTTTACTTTA
GGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCATGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAGGCAGAGCTTCCAATGAGCTGAGATCACGCCACTGCAATCCACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAATTTAC
TTTAagttctgggatacatgtacagaacgtgcaggtttgttacataggtaaacatgtgccatggtggtttgctgcacttatcaacccatcacctaggtat
taagcccccgcatgcatttttattaacttacaggaattctctttatactctacatgtaatttatcttttcaccctcctccattccccacctctttttttt
aagagacagagtctcaccctgtcacccaggctgcagtgcagtggcacaatcatggctcactgcagcctcagcctcccaggctcaagtgttcctcctgcct
cagcctcccaagtatctgggaccacaggcatgcaccaccatgcccagccaatttttcattttttgtagagacgaggtcttgctaagctgctcagg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
600 chr6 2004659 2004955 RIP_Alu_chr6_002_01 0 + Yc1RG139 CAGAGCTCATTATCATCCGCTT GGGGCAGTCCTACTTTCATTTAG SINE Alu Yc1 ttagctgggtgtggtggcgggtgcctgtaatcccagctacttggaaggctaagccaggagaatctcttgaacctgggaggtggaggttatagtgagccga
gatcacgcctctgcactccagcctgggcgacagagtgatcctctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcatcatgtccagtgtttct
ttatgaacccaaaagaggtgtatatttgaaaatatgtaatttatttgaactattgtttttttaatttgaggcatattaaaaatctgattagaatattaga
aaatatttcacagttttgcctacagagctcattatcatccgcttaagtgatgttttagaaaattattcacttatttagcaagacttAAAAATGCACTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ATGCACTACTgttcaactcctaaagaaaaaaaaatgtatttaatccttaaatactttttaaacttaccaaccccaaatatataataaataattctgacag
ggcgaagctcagagacactggcccccaaaaatttgcatagtaataaatatagtcttctaaatgaaagtaggactgccccattctcaacattggtattaga
atctaccttttgaatttctttacatttatgaaataagctttattaacgaaatgacaacaaataatataaccacattttcaaaattaaaaaaaatacataa
gcaaataataaacctccctcattttttcactaagctacgttttcctttcttcaaaactgttctctgtagtcattaaaccacagaagggacatcagt UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 557 247 NA intron
615 chr6 3995256 3995559 RIP_Alu_chr6_003_01 0 - 404|pAlu6-4040151 AGCCTGTTGTTCCAGTACATATGAC CAGTAATGTTGTACGAGCCAGAG SINE Alu Ya4 taaacttaacacttatttccaacatttcaaacacattaaattcattttaataccagctcagtgtgtggtattaaaacacacagatatggcaattaacttt
ctattggaggaaaacaggaacaaattaaaaaaagacagattctcatcactctgataaattttcacttttttgcaggtcaccatagtgacagctaatcaac
atgatcctttcatttctcaactcgtcttcagataaagcaaaggacggcataagacagacaatagagggaaggagtttaagttgttattggtgcatacagt
aggtactaaaatgcactgaattaaaaataatcagcctgttgttccagtacatatgacatatggctataattttaaaatccagtcAAAAACAACTGTTTCC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTGTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTATTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAACAACTGTTTCCattactttataattgcaatacttgttttacacattctatcatgtatcactttaaaaaaatagtttaaaaatatgttcttct
gtaagtatccgtactgttaaaggtttcctcacgtcttctgaacttacatgagctcattgtttctgatgatctttacagccacttcttggttggctcttgc
attatctctggctcgtacaacattactgaatacaccttgcccagtgtagccatacacattgtaacgtttatctaggacttcacctatgttcacacctaaa
aaggcaaattgaaaaattagaattctgactataataaatagaatcagaaagtaggaaacacagtgcagtcatttaaaaattgtgttaaatctctactatt
tgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR|Trace comparison NA 0 596 291 NA intron
632 chr6 6222354 6222601 RIP_Alu_chr6_006_01 0 + pAlu6-6267254 NA NA SINE Alu Ya5a2 taaaattggcattccagaagatgaggattaaacaatagtgtgtgtgaagggcatttcataaactgaacaaattattattctccgtattatatggtgtctg
atggctataatagcaaagaaatcttactaaacttattttatttttatttctgagcataaccacacaggtagtgaataaggtgtgagaactaaaagtaaaa
tcttatccccaccccactcccaaccaactgtacagactctttcttggctaaggggaccccagagaaaccttaaaaactgagccgcagccatgatgggatg
ggaggtggtacacacctcactatattccctttccttttgctgtttagacaaaattgaacagaatcaatgttaaaatagagatcatAAGACTGACACTGTG
CAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAG
CTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGC
GAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTGACACTGTGgcaataaaatatataattataaacaagacccaaggcca
caccaggcaaggattaagtcatgaacccctgcatttaaagaataaactatgttctaactgccacaaagtttttctttttgtctagcagctaaacaagccc
tggtctcaagatgagcaatgttggaacaactacagttcatccatcaccagatgctgactaactaactcacattccaccagccacaactacagttttgatt
gcgtaagagactgatttcagcatctttctcctggtaagagactatcaaccatggactggttctggacgatttaccgaagctgcacactacaatgcattcc
tgtccctgcttcaccttttgatgtatagggcctaactgaagcacata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
643 chr6 7662382 7662701 RIP_Alu_chr6_007_01 0 + Yc1RG328|pAlu6-7707282 GTGGCACAACATTTTCAAGAACT TTCTGCCCTTTAAATTCTTCCTC SINE Alu Yc1 tgaaaactccacattttttgaaaaacacacacgtacatgttcaggaagctgagcaaatcctgaacgaaataaacccaaagaaatccacgtgaagacacat
cataattaaacttctgggaactaaaagtaaagaagtcttgaaagcagccagggagaaacaattcgttacttcctagggaaaaacaattagaatgatggta
gatttctcatctgaaaccatggcggccaaacaaagtggcacaacattttcaagaactgaaagaaaagaactgtcaactgcaaattctatatccagtgaag
ctatccttcaagaatgaaggagaaataagctaattcttagacaaaagaaaactaaaagactttgttgctggtgtacctacccttAAAGAATGGCTAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATGGCTAAAGAgaattcttcatccagaaagaaaatgataaaagaaagactcttggagcatcaggacggaaggagga
agaatttaaagggcagaaatattggtacatacaatcgaatatgaatttcctcttgagttttagaaatcatatttaggccaggcatgatggctcatgtctg
taatcccagtactttaggaagccaagtttgggcaaatcacctgagcccaggagtttgaaaccagcctgggcaacatggcaaaaccccatctctacaacaa
atacaaaaattagccaggtgtggtggtgcatgcctatagtctcagctactagggaggctgaggtgggaggatagcttgagcctgggaggtcgaggctgca
gtgagccatgagcatgcca UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Candidate screening|Genome comparison NA 58 584 249 NA intergenic
647 chr6 8172938 8173240 RIP_Alu_chr6_008_01 0 - Yb8NBC589|3936 AGTCTTAATGGGCGCTGAGA AGTGCCTCACCCAGTAGCAC SINE Alu Yb8 agcctgagcgacagagcgagactcaatatcaaaaaaaaaaaggaaagaaaagacacacaagtcctcagctaactccagcacactttctttaacatagtaa
attactttaaaataaatttactaaaatatatccagttagctagtggaatttcgttggggtttgaggtttttcctgagttgtttaaattgactcagtcatg
aatgactttgtaaattaaaaattaaatggactttcaaaaaataaaatacatttactcaaaataaaattacttaaaaagaaattcaggagtctttactatt
aagtctcacgtagcttggactaatagtctccaagttcagtgcctcacccagtagcaccatcactcagagcaacagaagtctcttAAAAAACTTCACAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
CGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACTTCACAGTAaattaagtacaattagcagagcaaacatcaacactaccagcccaggaaagaagtaatcgctcagccttcattctcagcgccc
attaagacttgaaccatttctcaaatcagtgatctttttaagtgatcatcatcatgaacgccctcctgaattagggcctcctcattatggggcacataat
gatattaaacttcagcctttgttaagaagtggaggtaataaagctttccaagaagcgacagcttataattttgatccaaactataaaaatagctaagtgc
ttcctaatgctttcataagctaggctttttaaaatgttcctttaagaagcatttccttgaatgacagacataaacggctggaagagacctttgaaagcag
at UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 60 472 154 NA intergenic
653 chr6 8959831 8959923 RIP_Alu_chr6_008_02 0 + 33366 NA NA SINE Alu Ya1 atatgaaaatggcataaaaataaatatagttatgataacgatgtataatacatttattggtttattgttttttcctttaatattttctcatgaaccctat
tcaattgtacatttctcacaacaatttaaaacaatgacaagacttcattttatttgttgatatttttattcattgttaaatatttagagtaactattttt
aaaataattttgataaagttttcataaatgtaatgattcccatcaatgacttactattaccattgtagtggtactacagtgtgtggtcatttcaggtttg
tgatgcacattgacagcttgtttcctgatgttgtcccaactacattcctactggcagaatatgagtgagccagtagggcagggtAAAAAATGCTCCTCAC
AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATG
CTCCTCACcctaaagatacatatgtcctaattcctagaatctgtcactgtcaccttttgtggaaaaatggtctttacaggtgtgattaagtcaacaatct
tgagatgagaagattatcctacattatacatgtgctcactaaaataatcacaagcttccttacaagagggaggtagagggagacttgacttcagacagaa
aaggagaaggcagtgtgacacagaggcagagactggagtgatgtagccacaagccaagcaatgtcggcagctgacaaaagatggaaagggcgagaatgaa
ttctttgctagaacctccagcgcaagtgtgtccctgctcaaaagacatcatttttcagagagtttacttgtcatgatattaagtttatccat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
653 chr6 9020295 9020607 RIP_Alu_chr6_009_03 0 - pAlu6-9065197 NA NA SINE Alu Yg6 caatgcctgaaactttcccagagttggtccccaaaaagtacataaagctaaagattcaagaagctgagaaaatctctcaaataggataaatccacagaaa
tcgagatcaagagatatatcactgtaaaacttttgaaaagaaaaggaaaaagtcttgagggcactcaaaggaggagaaaaaagaaaaaaggaaggaagga
aaagaagaaagggagggaaggaagagaaaagaggaaggaaggtagagagaaaaaaacgggagggagggagtgttgggagaaggaagacagcagagatctc
atcagataccacagaagtcagaaggaaatgacacacatttttcaagtgctgaaagaaaagaattgtcaactcaaagttctatgtcaattAAAAATATCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATaggaatgaaggagaaatcaatgcactctgtaatacaataacctttaaaatatgtaaaatgtatataatagtatatattttca
ctgaatcataaaagtaagtatgtgacatttttgctttgccctggtaaaggcatcattaaactgcaaatacttcattattcttaatctttaaaataactat
tattgctttttaaaattattaaaaatatttcattaatgacatataactaatggttatgcttttccttgatcttttaaattacatacactgagagctgttt
cgtgtaacacactaacacttctctgtgatagtacagatacaaacatgctatttataaaagttaaaattttcagattttttttcaagaaatttggatactt
tgtgaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
656 chr6 9371722 9371971 RIP_Alu_chr6_009_01 0 - Ya5NBC197 CAGAAGTAAGATTGCTGGATCGTAT CTCAATGAGATATCACCTCACACAT SINE Alu Ya5 acataatgtcctccaggttcatccatgttgtctcaaattacagaattttcttatttttttaaggctgaagagtgctccattgtgtattacaccattttct
ttatccattcatctttcagtagacatttaagttgattccatacctctgtctgttgtgaataatgctgcaatacacatgaaaatgcaggtatctcttcaac
atactgaattaatttcttttgaatatatacccagaagtaagattgctggatcgtatagtagtttcatgtttgtttttaaatgaatcttcgtgctattttt
cataatttctgtactaatttacattcctactaatagtatatacccttttgtccacatccttgccaaaagtttgaagtcttttgtcttattGAAAATAGCC
GCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGC
GCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC
CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAAAATAGCCattctaatatgtgtgaggtgatatctcattgaggttttaat
ttgcatttctctgatatttaatgatcttgagcattttttcatatacctgttggccatttgtatatttcctttcaagaaatgtctgttctgttgaccattt
tttaattgagatttttttgtttgagttccttgtatattttggatattaaccctttattagatgtatggtttacaattttttttcatttcgtagtttatct
tttcactccactgattgtttcctgtgttgtgtgaaagccttttaatttgatataattgaatttttctctttttgcttttgttgtgtgtgtttttgtggtc
atatccaaaaaataattggtcagaccaatattaagaagattttaaaaat UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 461 204 NA intergenic
658 chr6 9568378 9568700 RIP_Alu_chr6_009_02 0 + Yb8NBC49|pAlu6-9522838 GCAGTGGATTGGTTTTTCTG GCTGAAAGAGGCATTGAAATC SINE Alu Yb8 aaaaattctatattccccctccctttgtatccacttactcttgtttcagctcaaatcaaaaaaataaaaaaagaagaattatggcctgaaggagaatgga
gagagttggtttcatgaccagaatcaaggaggaaagcttgcctgatcatcctcagaacaccatgagatccttgaaacagtagagtctcttttgattataa
aatatttattctgcacagatcaaaatggtgaagggagctgatatatctcaataagcaacatttttaaaaattatgataatttttgtattaactaattttt
tatgacaaacgttatgaattcatcagatgttaaagctgaaagaggcattgaaatcagatgaatccttcagagagaaaagagccttAAAAATTAATAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCATCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTAATAAACAtatataaagtcacacagagatccagtattagtctcagacaagtgattttaatctttatgtttt
ccttaccattattactatttcattcattatcatgacactttaaagtttttgaaacacagaaaaaccaatccactgcttacagtttcccatcaataaatca
ttaaattataaagttcatatacaatatagtagaatttatgtcagtttttaaaatattaaaccaaccatagttccaatcaatgtaattaaactaataatta
ttgagacagtacagaagtacaattaaagtgaattctcatgtctggttgtctcacttatattctggcttgaccacttactaacttatgtgacagtttttga
cctgtaaaatagaaatactagt UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Candidate screening|Genome comparison NA 60 542 205 NA intergenic
673 chr6 11664092 11664398 RIP_Alu_chr6_011_01 0 + pAlu6-11618553 NA NA SINE Alu Y attatttttgaaaaattttcagcatctttcccttcaaatatcttttcttctccattgtctctttcttattctggactccaattacatatatgttaaacca
tttgaaattgtgccatatctttttttctaaacttctagcattttcatttggctctcagaatttccatctctactgaaattcccaatctgttcatgtgtgt
tgtctgcttcttccactagagactttaacatattaacaataattattataaagtctctgtctggttattctacaaactgggccatctctgactctggttc
tgtagattgctttatctctcaacagtgagttgtttttcctgtttttgagtgcttcttttaattttttgattgaaaaagtctcactaAAGACTGAGGTACA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGACTGAGGTACAtcgtgtttatgtctggagatggtctgttgcttccgttagaccaatagtgagaattgatttaatctacttaggagttgagc
tgaatttgaattttgttgttgtggttaccttcagtgcactgcacgcttcacattctgtaaggttgctgttgttgccttgtgcttagggtgggagctctgt
actgcagggttattctcagtggcaatgctccattgtagcttttagccatttcttcacaactatgcctcaaaaggggtctctctccacacactagcctccc
cccagtggtggaatgctgatgcttgttacttgctgctaggctcctgaggggagctgtcctgtttctgtgttaggcatgctctgtgtatggggatctcagg
aggtgg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
676 chr6 12011438 12011734 RIP_Alu_chr6_012_02 0 + 17222|Ya5ACA1491|pAlu6-11965898 TTCCATTAAGTCAGGCACAAA CCTGCAACTCCTACCCAGAA SINE Alu Ya5 aaaacacctaggtatataaaatactgagaaatgtttttattttgggtgggcccagctcagctaaaactcaggaggtctaattttgagaaacaagggaaaa
acaaatacttacagattaacagcaatcttttacataaaaattttccacccccaagtgaaaataagtagcagtttcactttttcaaaggctttagactatt
ttgtttcctagaaatatatttattttcattaatagattattgggtctgacctccaactcagataaaaccattggattccattttttattatccctatgag
ttctatcctaagaatatgaaataattcaagattccattaagtcaggcacaaattaccctttaattatattagtagtctatcatcAAAAGTCTTTAGAGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GTCTTTAGAGTGaaaaggaaaatacatgaatgtataataaaagccaagaaaatgtaaaactattcattctgggtaggagttgcaggcttctctgagttca
gagatatttatgtaagatgtgcttagaagaacaatgtctttttaagctttgcatcccatgacatattaacagtaaaatttaaaagggactcagtaatcag
caaaatgacttatatgagaatgttcacaacttgtttcatactaaccgaaacctggaaatggtccaggatggatccataggtgaatggattagttgtaata
tatgcatacaagggtatatgcatactcatcaataaaaagaaacaaactattgatacatgcaacaacatggatatgtctcaaaagcattatgctgga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR|Trace comparison|Candidate screening NA 60 455 143 NA intergenic
678 chr6 12207407 12207684 RIP_Alu_chr6_012_03 0 - HSC37 CTACATGATGTGGGGTGGGCCTGCT CTTTGGGAGTCCAGCCCACTGTGAA SINE Alu Ya8 aaagcaatctagattacatatctaaccacacttaagaaatcaaagcaataataacgcactgtttacaaatcctgcctgttaagtaaaggaatccatcctt
tctgacacctctaccatccatcatcgattcaataaacatttgtcaaatgcctactacatgcactaagaactgtagtaagtgctgtgctatgactgtgggc
aaaactgtataggggaagatgtgaggagaccccaggcagaggtgagagggtgagggtgtggagaagtgagttgcatctatgttaccacgttttttcttca
catataagggtcatgttaaacagttactaaatggctaactacatgatgtggggtgggcctgctgaaataaacacactcctccaggccAAAAACTCAGTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACTCAGTGAcatttccctc
tggctcctgctccttcacagtgggctggactcccaaagcgtctgctcctcgggctcctgcagtccacctcccaccgcagatcaggccatgcatgaatgtt
actacatacatttgttttcattgcaatgcttttaagtcctcttcttgcccttcccactcatccacagaatcttatttgctacttccaacgcttttcttaa
ataaaataattttataccccattgcttggtggtcagggaaaaattctaagctacatccttcaaagtttgataaatttcctgcatatagcatagctccaca
aaataccctttgcacagtgaagcaataaaagaacaccatattgttggttaaatactttgttatctccatgctttgct UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.PMID: 7714898.
Library screening NA 0 0 0 NA intergenic
682 chr6 12725321 12725635 RIP_Alu_chr6_012_04 0 + Yb8AC1368 TCAGACATGCAAAGCTTCAAA TTTGGGTGCCCTATTTCTTG SINE Alu Yb8 gtaggacacaatacaaatagaataactagacaggatttttggaaattaaaagtattaaagccaaaataaaacattcaattaaaatgttgaaaaattaaac
taatctcccagaagtgggaataaacagagatgagaagaataaaaagaaaggaaagaaaaaatttatacgtagggatgtaaagaccgttttaacatcagca
ctggaagttagaagcaagagatcggtgtcctcaaaactttgagtaaaagtatccacccggccaaatgattaaccaagtatgaggacaaaataaagaaaat
gtcagacatgcaaagcttcaaaacattgatcttccatcagtccttacttaggaagccaataacaaagagaagaaacaaaaacaagcaaaacaagagAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGCCAATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAACAAGAgaagaaggaggtaaacacaggattcaagaaatagggcacccaaaacaggaaggaagaggtgcagaaaagtcttagaaagatg
gcaaagagatgtctcagtataagagttatgtacaggcccacagacaaacaaatacatattgaaaaattaaacagaagtcaacaagagtggttgtcttcag
agaaaaggaaagtggagctccttatcaaaatagactttactatatgaaaaatttttattgagaagtgtttaacataattagtgggtaatacggcaaaact
acaaggtcagagaaaactgagcagagaggtgaaggataacagacgacatattgccctgtaatcccagcactttgggaggccgaggcaggcggatcacgag
gtcaggagtttgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 461 145 NA intergenic
682 chr6 12772189 12772496 RIP_Alu_chr6_012_01 0 - 52592|Ya5434 TGATCATGACCTTCGTTGGA GTCTCTGGGCCTCCAAATCT SINE Alu Ya5 cattacccccttagcaaaacctttcatgcttcccacacctggttatgacaccttttgctataagctgctttagaccattgtcagaactcttcttgggaca
tttctcttcagagcatattgtggtaaccaatgaacctgtgatatctcccacgggctgctagcatgttaacaccacatctgatatacacctgtgtctgtca
tggtacttatcctagagcttcacaccaggggtctactttttttagattgtatacttccattatatttaaaaaacatgttctagcatatatcactgtcgtg
ggttgaatatggtgaagtcctgaacgccgttacttgtgatcatgaccttcgttggaaacagggtttttgcaaatacattcaagttAAGAAGTCATGCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGCGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAGTCATGCTGGattagggcgagttataaatccaatgactactgtccttatcatgaggaggagatttggaggcccagagacatgcagggg
aagaggccttgtgaagatggaggcagggattggagtgatggagctgcaatgcaagccaaggaccaccatgaattgctggcaaacactagaggctaggaag
aggagaggaagtgttcttccctggggccttctgagggcatgtagcccagctgacaccattgggtttgaacttctagcctcttaaattgtgagaataaatt
tctgctgttttaagccatccagtttatggcaatttgttatggcagccctaggaaactaatataaccacctctatggaaattaatataaccacatatatag
gtggtta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 455 133 NA intergenic
688 chr6 13629244 13629245 RIP_Alu_chr6_013_01 0 + pAlu6-13583805 NA NA SINE Alu Yb7 tcatcagggaaatggtaacatcacctattggatactagatgatagtaaggaatcattaattttttgtagatctaacaaagatgtggttgctttcttaaaa
ttccttatctcttagagatacatacagaagtatttacctttgaaattatataaagcctgggatttgttttaaaatgacatattagcggtaggagtagagg
ttggaaaggagatatagatgaaactagatcatccatctatcaataactattgaaggccaggcactgtggcttacatctctaatcctatcactttgggagg
ccgaggtgggaggatcacttgagcccaggagttcgagaccagcctggtcaacaaagtgatatccaatctctaaaaaatatatatataaaaAATTAGCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTGCTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATTAGCTGGGgcatggtggctcacacctgtagtcccagctacttgggaggctgagctgggaggattgcttgagcc
ctgggaagtcaaggctgcagtgagctgtgattgcaccactgcactctagcctgggcaacagaatgagaacctgtctcaaaaaaacaaaacaaaacaaaac
aaaaaaaaacaatgaatttctatgtgcaccagaagactaaggccacctttccttgcctaacacagccatggcttatggtcccaagaagcatctaaagcag
gtagcagctccaaagcattggatgctggataaattgaccagtgtgtttgctcttcgtccatccaccagtccccacaagttgagagagtgtctccccctca
tcactttcctaaggaacagacttaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
690 chr6 13826456 13826457 RIP_Alu_chr6_013_02 0 - pAlu6-13781007 NA NA SINE Alu Yd8 ttcagtatacaggagacgatgtaagttacaggcaaattcattttattatccaaatttttatataacatcatgttatataagagacttgggcctctgtgga
ttttgttttccacagttcttgaaaccaatgccctatggatggatacggaggcgacaactgttaatcatctcaccactctgcattagtccagtctcacatt
gctaataaagacatttctgagactgggtaatttataaacgaaagaggtttgactcacagttcagcatggctgaggcggcctcaggaaacttacaaccacg
gtggaaacggacacaagcacatccttcctcacaagacagcagcaaagaaaagtgcagaaaaaaaacaggcagataaagaccgttgtaaaaCCACCAGATC
AGGCCGGGCGCGGTCGTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTTGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
TGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACCCACCA
GATCtggtgagacctcactatcatgagaacagcatgaaggtaggtaaccccatgactcaattacctcccactgggtctctcccacgacacatggggatca
tcacaactgtaattcaagatgagatttgggtggggacaccaccaaactgtccaaaactggtgggttcttgttcccactgacttcaagaaaaaccacagac
cctcctggtgactgttaagtttttaaaggtggtgtgtgtctggagtttcttgcttctgatggtcagacatatgcagtctctcctttactggtgggtttgt
ggtctcactggcttcaggagtgaagctgcagactttcgtgacaagcgttatagcttttagaggtggcgcattgaattattccttcttctcctcc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
719 chr6 17580262 17580561 RIP_Alu_chr6_017_01 0 + pAlu6-17534722 TACCTCGATAGTCTCACTTC GTGTTGGTAGTGAAGAGAGCCAAC SINE Alu Ya5 aaacccgtctctactaaaaatacaaaaatttagccaggcatagtggcgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaa
cccgggaggtggagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagccagactccgtctcaaaaaaaaaaaaaaaggtttca
ttctttgtatcacgcttagttatgtttcagtttagccatttagccgtggtatttcccagtggtctggattgacagtttcaggaaggagtagcaccttaga
atctaaaccagtgactcactttatgagcttttccaaattacctcgatagtctcacttcataaatatgcgtaagtttctgctctgttAATAGTGCTGAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ATAGTGCTGAATGGGggttggctctcttcactaccaacacaaaagcacccaaaggcaatatatgcttttaatttctggagaagtgtattagtttaagttc
aactaaaatatctgcttaaatataatttatgtagtataggtaaaaaccaattgcattctgatacttacaagattgcttttatgtaaacagcagctttctg
agtagcagaaggtggagaagtgaggcaaaaagaaggcttttttccttttcctatgagccttccaatggcaagagaattaccttggtaattacatggtggc
tagcatgtgacggctactgcccgtgctggatgtagatgctggttaacacacaataaaacaccaaggaaggaaggagaggcaggggtttgtgtgatatcat
c UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR NA 0 400 102 NA intergenic
727 chr6 18655934 18655935 RIP_Alu_chr6_018_01 0 - pAlu6-107487595 NA NA SINE Alu Ya1 aggagttgataccattccttctgaaactattccaatgaatagaaaaagagggaatcctccctaactcattttatgaggccagcattatcctgataccaaa
gcctggtagagagacaacaaaaaaagagaattttagaccaatatccctgatgaacattgatgcaaaaatcctcaataaaatactggcaaaccaaatccag
cagcacatcaaaaagcttatccaccatgatcaagtgggcttcttccctgggatgcaaggctggttcaacatatgcaaatcaataaacataatccagcata
taaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgagaaaattcaacagccttcatgctaaaAACTCTCAATAAA
GGCCGGGCATGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGATAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCAGGAGACTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCGGAGTTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AACTCTCAATAAAttaggtattgatgggacatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaactgg
aagcattcccgttggaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcagga
gaaagaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcc
caaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaaagtgcaaaaatcacaagcattcttatacaccaataacagacaaa
Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
731 chr6 19245085 19245086 RIP_Alu_chr6_019_01 0 - pAlu6-19199633 NA NA SINE Alu Yb7 tatttatagatctaatgaatcaatgcatggtttcaatgacctaatgaatttcttatatccacaaataagacactctcttacttcaaaccatcaaatcagt
atttctcagaactgttttatacatttttattgaaacagattctccattagaaaaaagtgatgtcccctccctcagtgattttgagactcgcacttagctc
cacagtaaagaccttgtacacacagttgatttctctgtgtgtgcatgtgtgtatgcatgctgtctgtatgcaagtgtgtatacattttcaaaatataaac
tacaggcaaaaagtacaatgatcacagatgtacagtatggtaaatttttatatagtgagtatatccatgtaaccagcgctcaaataaaGAAACAGAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAGGAAACAGAAACAGgcacacagaaactccctcatactcccttgcagtcattaagtttccaaagacaaccatcatcttgacttctaatcata
ttaattatgtttttctgcttttaagctatatgtagatgaaatactaaaatatgtacatttttgtgcacggtccaacatttcatttacaagattcatccat
gttgttgtatgcagttgtagtttgttcatgttcattgatgtacagaatttcattgtatcaagattccatagttgctttgtccattctatagtggatgaac
gttttgattgtctccagtttggggctatatgggtaatgctgctatgaacatttatgttctttttgtgaacacattcatgtgtttcaatagggcatatatt
taagagtggaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
744 chr6 20873357 20873665 RIP_Alu_chr6_020_01 0 - 3176|Ya5ACA1572 CGTGGGGAAACTAAAGGAGA TAACTTGCATTTCCCATTGC SINE Alu Ya5 tgataatttggccaatacagttataaagttacagaaatacagacaagacaacacatgctggcttctcttacaaagtcctttctggtattattccaaacca
aggtatagaatgaagtgatgtaaaaaaatcaactaaaagtcttatcatacaatgtttttgtttggggccataaagaaattagcctactcttatttttaag
aaaatgttatggtttgaaaaatgctatctaagagagagagaatgaataacaaggagttcatcctagaaataatgtatgtagatgtacagaatacaaataa
gtaaagctgcaatcctattgttaacgtggggaaactaaaggagatataaagaaaagaggatagcaaaacagataaactgagtgcatttAAGAATGTAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAATGTAACCattacctttgcaatgggaaatgcaagttaccaaactgtaatcaaatagtaaagttaactttactatactcataaacttaa
aacaaacaggctcattgaaaaaaactaaataaagtaataaatccctggctcctttactcactagaaggtagaagttatcatgtatttacttacaccgatg
agactggaaagtattcctaacatgtaaggcaatccacaaactttttcccactacattcagactatactaactgtatcagagattacatataatgagagga
tgcatacaagtgttctttcaaagcacatattaaaaatcaataaaaattattttattgaaatgcaactattgaaaaagcagatgtgcttttgtggtccaat
accctccc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison plus genotyping|Candidate screening NA 0 0 0 NA intergenic
745 chr6 20995893 20995894 RIP_Alu_chr6_020_02 0 - pAlu6-20950446 NA NA SINE Alu Ya5 cgggtgcagcaaaccaacatggcacacgtatacatgagtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtataatttaaaaaaaaaga
aattatgttccaccaaaaaaaattttttttttaaagattagccaggcatggtggtccacggctatttgggaggctgaggcaggaggatcacttgagctca
ggagttcaaggctgcagtgagctatgatcataccactctactctggcctgtgtgacagaaacagaccctgtctcttaaaacaacaactacaaaaaaagaa
aaaaaggaaagatcttaagcgagtgagttctgacaatcatctactgtgtagctcaaactactctaaagatataaaatactttcctctagaaaGTAATCCT
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTACAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA
AAAAAAGAAGGTAATCCTatgcacctcatcagacaatctctccctaccctcgtgcctacaagtattcagttttttttctaccacagattatttccagaga
ttcttgtgaatgaaatcatatcttgcactttttttgtgtaatgcttcttttactcagcataatattgttaaattcctgttattgcttaaattggtagttc
gttccttttagtcactaaataatagttcattttgtggataaattccattttgtccattcttctacagataaacacatgggctgtttctaatttttggtgg
ttacgactaaaatagctataaacatgcttatacaagcttttttgtgactaattttgacaaatttctcttagtaaatgagtagaattgctggattacagga
taagtgcatg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
755 chr6 22335463 22335733 RIP_Alu_chr6_022_01 0 + 238761|Ya5ACA1516 GGCAATTAAGGCACTGTGGT ACCATGTTCCCTGATGTTCA SINE Alu Ya5 agtacctgaggcctctccagctatgtggaatggagtcaattaaatctctttcctttataaattacccagtcttgagtatttttttaatagtagtctgaaa
actgactaatacacatcttttcctttctctgtctgaacatagatatggtccaccctcttcttgccctttctgccaggcttttccactgctatggagaaat
acagagtataagatacaaaagtcagtagttttgagacagattacgatttaaataattaaattgccacttaggcaattaaggcactgtggtacattaggat
tataacctgaactcctgaatataaattttaaaaaattattttggcccctattttccaatggtatttcaacctttattagcttcccattGAAAAACTTGTG
GGAGGCCGAGGCATGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGG
CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC
ACTGCACTCCAGCCTGGGCGACGGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAGAAAAACTTGTGtgcacagagaaaatgatt
cataactgcaatagccctgaacatcagggaacatggtaaattttccagaatgttggaagtattttactaaccaagtttggatcaggcttctatattaggc
aaaataggaagagcaccggacttggggtcctggtacctgccaccaagtagtggctttaaatgagtcacttttctgtagacattagctgcctcatctaaaa
agtaatgagattgaagctagtggcttttaagtgtcgtttaaggtacttacgtcctataacctgtttgtgtgtgtgtgtgtgtgcatctttacaaaagcag
atgagattgaatgaaaatttatgcctttctttttttgagtgcattatgtaatacactttgcagacttgtg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 467 165 NA intergenic
763 chr6 23408355 23408663 RIP_Alu_chr6_023_01 0 - 30935|10655|pAlu6-23362812 NA NA SINE Alu Y tcacagttgaatacagaagcttttataagaaaccaacgaggactaggcatctcatttgcataatgtgcagatttctggtagctccaccccatcctcctag
tatgcatgtgggcccttagcttgagttactccatattgctttgttccccttactgtgtatgtgtgaggggacaaaattttccattttgggcatgtctggg
taaatctcctgtgtagcctttcttacctatgaggctgtgggcatgcctcaggcaagcctccctgtgcaagttcccttatctatgcctgcaggttgttctt
ttgtttgaaataattcaactgaagacccatcctaactgcctgcctaaccagtttgttccttcctcctctctcaatttcagttttttAAAAATATTTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATATTTTCTCaggtggtagttaaggtagcacaagcctctaatattcaaggttattattcttgttattcaagaatataatattcaaggt
tattatattcttataactttgagatagattttaaatttatgagatcttatctgaggctatctacctgaacattaacaagttgaagaagatatataatact
tataaacaaatattcactgtgaaattatctgtacttatgaaaaaacgaaaattaagttttgttaagtatatcttaaatgttaggacccttaagaacatga
agaaatgtttaagatataatttttaaataaattaaagcaacataagtatctagatattttggctgcaactttataaacatgttaaacatatttgttgaat
ataagaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
766 chr6 23793981 23794293 RIP_Alu_chr6_023_02 0 + pAlu6-23748441 NA NA SINE Alu Yb7 cttgcattttgtaatatggatggcctttactccagttttcaataatttattcctcatttccatctgataccccaacagaatggccttcacggtccatatt
tctaccaacattctggtgacaaatcacttacgtaatctctaagaagttccttactttccctacagcttttcttttcttctgaggtctcaccagaatcacc
cctaatgctccatctatggcaatgcaggcttttcctagcacactgttccaaactcttctagactctacccattacccagctccaaagctgcttcttcatg
ttcagttatttggtatagcaacagctctacttctgggattgttttgtgctgcaagagcagaatacctgagactgggtaatttattAAAAAAAAAACAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAACAAAAAAAAAACAGGAatttatttcctcacagttcttgggactgagatgtcaggatggagaggctagcttctccatcttgaaggccttc
ttactgcatcatcccataatggaagggcaaagagagagagagagagcaacagggtgtcaaagtcatccttatataaggaacccgctctcacaataatgag
cccacctccacaataatggcataaatctattcattagggtggtgccctcatgatccaaacaccacctgttaggttttacttcccaacacgtacacattgg
ggatcgagtttccaacacataaactttggggaacatattcaaaccatagtatgatcttagcaaactcatccctgttctacctgttccagacaaggaataa
ttgaagtataaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
768 chr6 24086336 24086337 RIP_Alu_chr6_024_01 0 + pAlu6-24040896 CTCTGTGAACCAAGTCCAGGGCATG ACAATTGCGAGAACATGCAGGCAGG SINE Alu Yb7 ctagggaatgctgacctgtctgaatgtctcttttctttctcttgatcatctatctttagactcaggaggaccaaaagtaactgaataaacattatcttgt
ccttggccttcaccaagcaaaattgtttatatctgagaccatttccctttagagtctgagatcattattttaaagtagattgtcaaatgctccacagttg
atctcagttcagctctgccatttgctgctctgtgaaccaagtccagggcatgacattaagactgtgactatataacatgagaaaaatgttttaagacaga
ataaaacatcacatacagtttctggcagtgaatcttaacaattgaaatatcgttgtccaaggaaacacttcaagatactgttacagAAAAATGACAACCA
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAATGACAACCAtgcctaccccataggcagttgtgagaatttaatgagatgatggatgtgaatgagcacagtgcaataacatgcacagatttt
caataaatggtttgaatcacaatgtaatgaaatgtatttaatccaattcagtatgtgcatttcaggaaatagtgtggctacctgcctgcatgttctcgca
attgtgcactgcctaatttttatctttctccatgtttatactccatcctacaatctgggtcagtcttatatataattaggaaaagaagatgcctgtataa
tgttgcctgatgcatacaaaacaaagtccccaattctgaaacctctcctttttaatgtgatgtagtaaaatttaaatgttagtatccacatcttaagaga
gcatt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR NA 0 678 371 NA intergenic
780 chr6 25637863 25637990 RIP_Alu_chr6_025_01 0 + Yb8NBC67|7451 TCTCTACCCAGCTTTACCAA GAGGACCAGCTTAGTTTGTG SINE Alu Yb8 cccagattttatgttcacaatgtcaggttcattaaaaaaagaaaaaaaattccgagattcttttgaagaaaagtttgatgaatattaattaacacatgct
gaagagaaactgaggtgtttttctcttatactgcattcctcttctctctacccagctttaccaaagaaacagaattataataatttaaaaaaatgtgaaa
tatttcttttccaaaaattaaccaaaaccaaaaatcacaagatatttgaggaaaacaatctatgtgtcaaagagcgagatgaacaaaggaattgagctca
gataatgcagagtacagcagagagctttaaaaaaaattgttattgtaagttcattgggactgcagagaatgatacatccataaaatAAGAATAGGCTGCT
AGAATGGCGTGAACCCGGGAAGCGGAGCTTGCCGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAGGCTGCTatgaacaggagtagtcagagaataagaaacaatgcttaacaattaaaattgtgatactg
tagtacagaattaaataaactgatggacacaaactaagctggtcctctggaagaaaaagtagagcaaacctttatagcttataataaaaaaagacattaa
aaatatgaaagcaaagtaggtgaaatggtgaattgacttagaataatcaacagccttctaatggagcttcaaaattattataaaaatgagagatattaga
ggacaggaaagaatagaaaaccatttcatatgagtctcggggttgatataacccactagaattgatcagaatgagtgggcaaaaggacccacacctaaat
atatcttggtggaatctcagaacacct UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 55 503 375 NA intergenic
783 chr6 26005978 26006279 RIP_Alu_chr6_026_01 0 + NBC212|Ya5NBC132 CTCGTGATTCACAGAAGTGTTGTAAG CGGGGTTCATCCTTAATACATACAT SINE Alu Ya5 agagtaagacagagaggggttcattttttattttattttattttttattttttgagacgttgtctcaccctgtcgcccaggctggagtgcagtggtgcag
tcttggctcactgcaatccccacgtcccaggttcaaacgattctcctgcctcagtctcccaagcagctgggattacaggtgcctgccaccatgcccagct
aatttttgtatttttagtagagacagggtttcgccgtgttggccaggctggtctcgaactcctgacctcaagtgatctacccgcctcggcctcccaaagt
gctgggattacaggtgtgagccactgcgcccagccggggttcatccttaatacatacattagagatatagattctgtttttatctAAAAAGTCTTTATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGTCTTTATAAaaatctgattgaatggttgaatgctgtgctaaaatctgcataatatcttacaacacttctgtgaatcacgagacagtttt
gaatgctaaatgtcagttaacagatctaaagggaccaacatctgctttcccaaattatatgaaagaagatcctgatccctcatcaggtgaaactcacatc
agacaacagtgtctgcatttctccaaaacccgcctcagccccatggccactttccagggttatcctgcctaccaagcactctctttcctcagaaaaactt
gggggaaaatgtagaataataattttttgaagttctgaccaacttcttgaatcactcagcatgtttttgactgcaggtacagaaaacgctgactcaacaa
attta UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening NA 60 458 228 NA intergenic
800 chr6 28298186 28298511 RIP_Alu_chr6_028_01 0 - pAlu6-28252653|53100 NA NA SINE Alu Yb8 agaaagaaggaaagaaaagaaagaaagagagagaaagaaaggaaaagagggagacagggaaaaaggaaggaaggaaggacttggaggattggtgacaaag
agattattgatggaactagctcgtatgtggatagatctcttagaatggatatcaaatgtacaaatatttgtgtcctgtatgaatcttcattaacccactg
tgtcagagggtttcagtaagcaagtgaacaagatgatggtgaaacagaacatggactcctcctcttcatagcctactgggatccctccttaagcatgaaa
ataaaggaaaaattgtgagtcccttcaagggaaattccaggcaccctgcaaccagcaactagggaaataaattaataacctgctaagcAAGATGATAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGATGATAATAatagcataaacaatagtcacccaagtgagtcagagtcatgagatgtttgtttccttatagaaa
ctaaagataacatttgacatatgtccttgagttgagttgtttttcagaaaccaggacccccaccagatggaaaatgttgatcactgtcatatagaccttg
acagacaggaatcagaagatggataagcaagttctagaaattttccagcctttagctcacattggagaaccccctcatccatgccttaaaaactcttgct
tgtaagccatcttacaaagagttcagatcttaagtgttagtggcccaataaccttgcttggtgctctacaataaatgccttactttctctcactgcaaat
cctagtgtcaatgtttgactttgct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
806 chr6 29080200 29080294 RIP_Alu_chr6_029_03 0 - Yi6AH86 CCATTACTGCGGTAGTCTTC CAGCTCTTATTTTGGGTGAG SINE Alu Yi6 cttgggaagatgacctataagaaaacacttgaaggaggcaagattattagccatggagatcgcttaaggtgaagggagcagccaatggaaaggccctaag
atgaaagagaaggaaggtcggtatggctgaagattgagggagtgggagaagagtagaaggtgttgagaatgacacatcctgtagacttgtatgccactct
taagacttcagctcttattttgggtgagcaggagaggaagttagaagtcacgggcacattcagtagggccttgtatacctcggtaaggacttcaggtttt
attttaagtatgaaccactggagagttttcagcagagcgatgaaatgatccaactcaagttgtaaacggactactcagactgccctattAAGAAAGGAGG
TGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA
GGAGGaaggcaaggattgaagaaaggagaccagttagaagactaccgcagtaatggaaaggaggggagatagcaggtgatggtggctcagacaagggtgg
tagccgttgagattgtattctggatatgttcacattttcagtttgacttcgtgcctcaggttctcagtgactccctattttttcctgtggtcacattcct
cttttcccttcaccaaatatgcagggaaacaagatgtgagatcacagcggtttagtgttgctaatgaaccccaaatccagggcagtgtttgacacattaa
gccaaacagtagcggcactgtgggtcaagaagggccctttggctggcaccaccaaaacatgtgttctccaaaggaggctggcatcaactggagc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 55 358 243 NA intergenic
812 chr6 29788447 29788448 RIP_Alu_chr6_029_01 0 - AluyHF GCCTCATGGCCTGAATCTGCCAGTGTCCTT GTAACTGACCTGCCCTCTATAGTATAGTCT SINE Alu NA cctttcctcagcaggcctaattgaagcaagtcccctcctatttctcctagagtgtaggtcaaagcaatagatgtgggatgtggtgttgtcagaattcaaa
gaggctcaccaggcagtgtgcttccttccttgtagtgaggatgcaagatgcaacactttgtcttttactgtggaggagaaactcctggatgtcctcaacc
actggatgaataaaacttcaccacagtggccactcctgaatctctgtgtggtttatcttccatctgctggagagcacgtgttttgccaaggccttcagca
tacttcccatctcctactcatccatcctagtcaacatgatgttgttgatgaaataagctgatttaccattctataggatgccagGTTCTTCAGATCTCTT
NNNNNNNNNNGTTCTTCAGATCTCTTaagactatactatagagggcaggtcagttacaataaccctgaggccaattatcaataaatgtgttgtggatccc
acatgaatcacttcatgtatagtttttctcattggaatggaaaggaatgcactcaccaaatccacagctgcacactttgtgcctgaggccttatcaatct
gctctaccagtgatatccagccagcatggcagctgcaattatgactcctactttttcaagtctgaagtaatctcattcattctttaggccccatcaggct
tccttggggacagattgctggattacgtgaagataacaggcaactccaacagcacccctcatccttcagctctctaatggtggtgctacacctaaaatac
ctacagtacc Other - Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.PMID: 15592666.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.PMID: 15996165.
- Dunn DS, Naruse T, Inoko H, Kulski JK.The association between HLA-A alleles and young Alu dimorphisms near the HLA-J,-H, and -F genes in workshop cell lines and Japanese and Australian populations.J Mol Evol. 2002 Dec;55(6):718-26.PMID: 12486530.
Direct sequencing NA 68 605 445 MHC related intergenic
813 chr6 29926851 29926852 RIP_Alu_chr6_029_02 0 + AluyHG CAGGACAACCAGTAAAGATGCTGG GCTTCAGTTAACATGCAAGTTTATGCC SINE Alu Yb8 acaaaaagaaagagaacaagtaatcttaactattgattccaccatcgtgcagtgcaatagtcaatggctgcaactgaaaaatcaagcaatgttaataaag
aaatggtgctttggtgcttagatatgtgaaagtaaagtcaaaagaatcagctgaaacttgaaagtggttgctccctagaaaggcagaaatagagaagaga
ggactctccctagaaaggcagagaagactctcatttttctcagaaagtcctgcacaaatatttactctttccattatgtgcaattgtaacttcgaataaa
ataaaaacaaaagcttcagttaacatgcaagtttatgcctaatgacaactttgtttaacaatgataaagggctaaccaaaatatAAAAACACTTAAACAT
GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGT
CTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAA
GCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACACTTAAACATaaaacagcatgtataaatgtgtatgtgacatcaaccctgaatacaaacttgaaagaatatgtctataaacaactctgg
atagatagcccatgaatgaattccccactccagcatctttactggttgtcctgtgagcctaggcagggaggggaccaggacctgactagggtccctaata
ctcttgcttccaggcaagtcctgcatgcactcctgctgcaccaagggctcccatccctgccttggtctgtttcataggtgctcccctaactctctgccac
cactgccttacctgggtggagctgaggccgccctgaccaagaagagcaccagccatctatgtgccccaaaaccagaaagtcaaaagaaaccttgcaacag
ggtcag Other - Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.PMID: 15592666.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.PMID: 15996165.
- Kulski JK, Martinez P, Longman-Jacobsen N, Wang W, Williamson J, Dawkins RL, Shiina T, Naruse T, Inoko H. The association between HLA-A alleles and an Alu dimorphism near HLA-G.J Mol Evol. 2001 Aug;53(2):114-23.PMID: 11479682.
Direct sequencing NA 60 540 218 MHC related intergenic
814 chr6 30106474 30106475 RIP_Alu_chr6_030_01 0 + pAlu6-30058815|AluyHJ AAGAAACCCATAACTCACTTG TGTGTCCAGGTTAAACTTCAG SINE Alu Yb7 tcagcgtgtagttttttgttgttgtatccttccctggttttgataacaaggtaatgcttgcttcctagaataaatttgaaagaactccttcccccttcaa
ttttttggaatagtttcagatgaattggtgtcagtctctctttaaatgtttggtggaactgaacaatgaaggcatccagtactgggcttttctttgttgg
gagactttttattcctgattcaagctcattactcattattggtatgctcaggtttttaatttcttcttggttcattcttggtatattttatgtgtccagg
ttaaacttcagttgcctttataatctaatgagagctatggaccaaaattttgggtaaagcactttccgtggcagttagattttttaaaaaAACTTCTTTC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTACGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTCTTTCattgcccccaccttttttgttgttgttgtttcaagtgagttatgggtttctttttaactgaa
ttgtataagcaaaatatctccaagtagccttgaattagtaacaaatcaatcttttgtttaccagtcttgtttgcttaattagcaaatgtggggagggaag
aattttagctgtttttttttcttcacctttttctttttggcttttgcatggcacaaaaaacaaaatttttctgttgaacagggataccttctattattgc
tctgagatcaagattttgacctatttggtctgagagcctaacttttataaacatttatttttttttcttttatgttactaatttttcaattaagtgtttc
attattgtacacagttgttagggaaacc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.PMID: 15592666.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.PMID: 15996165.
- Dunn DS, Naruse T, Inoko H, Kulski JK.The association between HLA-A alleles and young Alu dimorphisms near the HLA-J,-H, and -F genes in workshop cell lines and Japanese and Australian populations.J Mol Evol. 2002 Dec;55(6):718-26.PMID: 12486530.
Genome comparison|Direct sequencing NA 68 501 173 MHC related intergenic
822 chr6 31079569 31079570 RIP_Alu_chr6_031_02 0 + AluyTF NA NA SINE Alu NA tgcttcagcctcccgagtagctgggattacaggtgcgtgccaccacacccagctaatttgtgtgtgtgtgtgtatttttagtagagatggggtttcacaa
tgttggccaggctggtctcgaactcctgacctcaggtgatccacccaccttggactcccaaagtgctgggattacaggcatgagccactgcacccggcct
aaaaccactggtttatatactttattttattcttattatttttttaaatttgagatggaatctcactctgtcaccgaggctggagtgcagtggcgcaatc
tcggctcactgcaacctctgcttcctaggtttaagagattctcctccctcagcctcccaagtagctgggattataggcgagtgccaccaTGCCTGGCTAA
NNNNNNNNNNTGCCTGGCTAAtttttgtatttttagtagagatggggtttcaccactgttgaccaggctagtcttgaactcctaacctcaggtgatccac
ccatctcagcctcccaaagtgctgggattagaggcatgacccaccttgcccagccaggtttatatactttaaacaggtgaactatatggtatgtaaatta
tagctcaatacagctcttaaatttttaccaggcacattatgtaaataaaaatttttatttcctggccggacatggtggctcacacctgtgatcccagcat
tctgggaggctgaggcaggcagatcacttgaggccaggagtttgagaccagcctggccaacatggcaaaaccctgtctctactaaaaatacaaaaattag
ccatgcgcgg Other - Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.PMID: 15592666.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.PMID: 15996165.
- Dunn DS, Inoko H, Kulski JK.Dimorphic Alu element located between the TFIIH and CDSN genes within the major histocompatibility complex.Electrophoresis. 2003 Aug;24(16):2740-8.PMID: 12929169.
Direct sequencing NA 62 710 426 MHC related intergenic
825 chr6 31574206 31574522 RIP_Alu_chr6_031_01 0 - AluyMICB CTCAGCCCTGCTTTCCCATCT GCCTTCCAATGCCATTCACAG SINE Alu Yb8 tgcccggagcctgcagactccaacccctcagcttgagagtcaggaccccccacagtccccacagcagcaagaagcaccacctccgggtcccaagaaagga
gggccccaactccaggagctgcggcccaggagctgagaacacatcggctccgggagaggacaggacttcagggacctgagatccgcccccagcaccgggg
gaagtggctgcctcagcggccgcgctggaacggccttccaatgccattcacaggagcagcccgggaacccaggggcctcagaaggactggtttgtccgaa
aagtgagaggagacggaggagaggcgaggagagcaagtgcaggagagaccagaaaatgcgggtgatgcgcgatcccgaggaggactgAAAGGAGACAGGA
GGTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGACTAACACGG
TGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGCGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTACAGCCTAGGCGACAGAGACTCCGTCTCAGAAAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGGAGACAGGAgatgggaaagcagggctgaggtgtggcgggaacaggcggcgtccagctccctgcactccagacagcacacc
tgagccccgccctgaccgcacagcgctcgcggcaacccacccggacccccggaaacgccccgccgctcccgctccgccggggaccgccaggaaccccact
caccagcggcggctgccgggggtgcaaaagggaaggcgacggccagaaacagcaggacccggcccagccccatggcccctacgtcgccaccttctcagct
gctcagcagtggccaactgaatgaaacccgtgagaagaccccgtcgaaatttagtcacctgcgccccgctcagcgaccgcttatccagtgaaaactgagg
cccggaacttagggcc UCSC - Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.PMID: 15592666.
- Kulski JK, Dunn DS, Hui J, Martinez P, Romphruk AV, Leelayuwat C, Tay GK, Oka A, Inoko H.Alu polymorphism within the MICB gene and association with HLA-B alleles.Immunogenetics. 2002 Feb;53(10-11):975-9. Epub 2002 Jan 26. Erratum in:Immunogenetics 2002 Aug;54(5):365.PMID: 11862397.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.PMID: 15996165.
Direct sequencing NA 67 665 336 MHC related intergenic
833 chr6 32578046 32578047 RIP_Alu_chr6_032_03 0 - pAlu6-32517693 NA NA SINE Alu Sg ccccaatttgatatccagctttaacacaatttctctctaattccagcaagatttgtaatagttgtagacaaagttattctaaaacgtataggagaagcag
gggaactagtataggtaaaacaaatttcataggaaaaaagagatggagaaataactgtaaccaaatttcagaagttttatagctatagtaatcaatactg
attgacattagtgcagggatagacatagattagtggagcagtataaagaatccagaaatacacctatgccaactcattttgacagagatacaaaataatt
caatggaggtaatatagtctacagtcttttcaaacaatgatccaggagaaagtggaaatccatagacaaaaacaaaaccaagcaaaaacaaatagAAGCA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGACGAGGTCAGGAGTTCGAGATCAGTCTGACCAACA
TGGTGAAACCCCCATCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCACGCCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCG
CTTGACCCCAGGAGGTGGAGGTTGCAGTGAGCCACGATCATGCCACTGCATTCCAGTCTGGGCGACAGAGCAAGACTGTCTCAAAAAAAAAAAAAAAAAA
GGAAGCAAAGGGAAAAAGAAGCAaaaaagaaacaacaaattctcacaccttatgaaaacatttaccccaattaaatcatgtctacatgtaaaacatttag
aagaaaacatatgagaaaatcctcaggagctagggcccagtgtctgagttttgagttcttagacatgacaccaaaagcactatgtgtaaaaaacaaaaaa
caaacaaaatcaataaatagggctttatcaaaatttaaaacttttgttctgtaaggtatcctgctaagaaatgaaaagtaaactagagatatggagaaaa
tatttaaaaccacatatattaccaagaataaattatctagaatctataatcaactataaaagctctactataaaatctatagtagactgcagactataaa
atttaattacataatggg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
833 chr6 32611926 32611998 RIP_Alu_chr6_032_01 0 + 238419|Ya5ACA1508 TGCAGACAAACATGGAATGAA TTAGGGAAGAAGGGCTCCAT SINE Alu Ya5 ctgaggagaggacaggacaatcagctgcagagaggagccaccctctctgttgatagctgaacagatgtcggggcaacctggcagtggagaggagctgccc
actgtggctctctgagctgttctattgcttaataaagctcctctttgtcctgctaaccctttacttgtctgggtacctcattcttcctggacgcaggaca
ggaacctgggatctgcctaatgatgaggctaaaaaagctgtaacacaaacaggttgtagatgagcaatagagaatgtagtcaaatgcagacaaacatgga
atgaaaaagcaaaaataaatccatatcattccatgtaacaagaccattttttaaaagtagttttaagtggacagaaaaattgcagAGAAAGTTCATGGAG
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAAGTTCATGGAGcccttcttccctaaagcagccttctgcttaatttctcctattcttaacatcctgcatcggtgtggtatacttgttaccactg
atgaagcaatactgatacttgttgttaactgagatccatagtgaaattagggatcattcttattatacagttctatgggttctgataaatatattatgtc
atatatccaccatttagtggaactgacccaagagtcccataggcagttttttttttttttaaataaacatagaaatggacacttctggtcttaaagcttg
aaacttacatttgttttatttgagttcctttccaaaaaaatattctcccaggcctctcaaaaagtatcaaagaactggaactcaccagatcgtctcatct
agt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 448 130 NA intergenic
834 chr6 32765930 32765931 RIP_Alu_chr6_032_02 0 + Ya5ACA1571 CCTCCTGCAAGAACTAAGCG TCCAGTCAGTAGTGAAGGCATC SINE Alu Ya5 gcctgtctctggactcaactcaacatcccatgtcctcgctcagactatataactctagacccagcctgttaatatggactgcttgtattttttcagagaa
acctctaaaagaaattatcaatttcttcaaaacattaacttgataggttctttttaaatcaagtaatctgttgaaaaaaaaattatatgggtgctctaaa
ctatatcccctggataatctaacctgtaaatagtttgaacagttatcttttacagccagaataacaatactagttaataccagaggactaatctatgggt
agctcgtttcaaaatttactctgagagcttaaaagaaaatatattttgtagggaaacaaagcatatttttccaagatccagtcagtaGTGAAGGCATCTT
NNNNNNNNNNGTGAAGGCATCTTaatagtatccaggatcctcacatgtgaagaaaagtgaactaggtaacaaatgagaagacttacatacgcttagttct
tgcaggaggaaaggaactatctgggtatggaaaaggttactaggcaagattgtgattgaagagaaaggataatgataaaggggctttgcagaagctctgg
ttagaagaaataactaatagtaatgaatatgtatctctccaaccaatgagaagcatatgatgaggcagagtcacttgtctctggcagtccaagctactaa
gaagcacaaataaaatatatagtagcagggggagatgggaagggtgagagaatgtaggataaattaccattcaaactgccggtagaaatataaaattgta
aggaataaat Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 425 110 NA intergenic
838 chr6 33201402 33201716 RIP_Alu_chr6_033_01 0 + Yb8NBC65 ATCTCATCTCCCTGCCTCTG GGGAGGTCTGGAGATCTGTG SINE Alu Yb8 cgtaattggttgagagaggtgtccaaataaaagtaatacaatttgcaaaatctgtcactaagacttcatagaggcccaaatcagcgacatggcagcattt
tctttcatggtaatcagctgccagattgcagagaccccctgatgccagactaaggagtgtggatttctcctctaggccagcaggtccccaacctcactgc
tcagaagactctccttgagatcctctgtgaagcaaagattcccccagactcactgcctagagattcagattccctaggtggggaggtctggagatctgtg
tttttaatcagctcccaagtgattcccatgtaaccagataagtgtcagaacactgaagatttttgaaaatcttcagaaatcttAAAATGACAAGGCTGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAGCCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATGACAAGGCTGGAaatctgttttcagaagactgtgaagtcagttggagagagcaggaaccagaggcagggagatgagataag
aaactgctattattgtccagggaaatcataataagggcatgaattagaataaagaaaaacacaggggtaggggagacggaggaaagaggaggatagaagt
tctggccattccagtgtggatgcccacccaaatctagaattaactgagcaaaggcaactagaacaaacaggaatccttgccttggtgaaatatatttgaa
ctgggtcagaaatgaggccactgggtatcaagccttagctgcagcgccccctggaggtctctgatgtgctccaggctgaccagctcccgtcaaagaagat
ggagcaaagtgctt UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 517 186 NA intergenic
870 chr6 37402950 37403254 RIP_Alu_chr6_037_01 0 + 238692 NA NA SINE Alu Y cagaaaaagaaatcttaccacacagaggtgaatatcacaaattttaaaaaaattgattagtatgcattttattttatgtattaatatttaaaaccattat
tctgaggagattgatggggttcaccagacagcccaagagtctaaggtacagaaaagactgagaccattataaagagagcctgcctaacttaggatacaag
tggtctacctgaggagaatgttagcaaaaagaggcaacaccttttccagttgttgtgggatagggacatggtgcgggaaggaggtaggaagcagcagaga
tgggtaaaaggggccagaggccagggagtacatggtggcatgggggtgggggcatgtagtatggtccaaggtcaacattttAAAAAATAAGTTGAGATAG
GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGACTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATAAGTTGAGATAGaaatgatggttctctttcaaacaaaacaaacaaaaaaagctttgaggcagacaggactgaggccagaatagaaccaa
gagggaattactcctgtgagaggggaatattccaaagatgttccgatcagctaaaggcagagtttttaaaagcagagcatctgctggcttgagtgaatat
caataactggttgaataactggtctggttgagtgaatttccgtaatcatgtgactggaggggtttgcctggagggttggagagagcagatgccagcaacc
atggaggggagagtggggaccttgggatgtgcactcctccgggggttcaccaccatcatgacggctttgagttctgttcttgggcttggggatcaaaggg
aaga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
882 chr6 39030176 39030480 RIP_Alu_chr6_039_01 0 + Yg6AH160 TCAGAGGAAGGATGGGCTTA TTCTCCCCTTGATTATTGGTTT SINE Alu Yg6 ataacatacggatgggacagaatcaataagtttttgtagaaaaagaggagaagggaaactttggttatagatattgtcttgtactggtcaagatctgtag
tgagaaatttggagcagataaactctgcacagagtactgggtacatgggcaaagtggagaaagcagatgggtttagcacgagagcctttctaggagcctg
actactggaggagggaggtctcagaggaaggatgggcttaaaaagaacacctaaaaacaaacgaaagagaacaaatacataaaaccccacaaccacacaa
aagtagtagtgggaaaactgatataacaatatgtacagatgaaacattttaacattttaaataataagagaatggctcataattatagtAATAAATTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAATAAATTACAgcatctcattaaaattggcaaatttatagaaacatatgaatttagaaaatttcctcagaaaaggtagaaaaccctgaataaacca
ataatcaaggggagaaaaagtagaagttttaaaattattacatcagcaaaggctctaggcttggataattttctgataagtcctttaaaactttcaagga
ctctcatatgctatattctgttccaaaagatggaaaaagagaatacattttcctttttcttttgagacaggctcccactctgtcacccaggctggagtgc
agtggtgcaatcatggctcactaaagccttgacctcccaggctcaagtgatcctcctacctcagccttccaagtagctgggactacaggcacacaccact
aatc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 60 596 281 NA intron
901 chr6 41512054 41512361 RIP_Alu_chr6_041_01 0 - pAlu6-41405388 NA NA SINE Alu Ye5 ggtgagctgagatagcgccattgcactgcagcctgggcaacaagagtgaaactccgtctcaaaaaaaaaaaaaagaaaccgataaccataatagctgaca
aaacctgcgctgtttggctcagcatcatgaacgcttgttataacaccctgcatggagtgggtgcttggggagggtcggtggtgccactgtgaggagatac
ctggtcttcaggctggcagcaagcagaggcctgggaaacctcagtgcagcagtgtgaccaagaaagaacgaaagagtccggcaggagtgaggagcagttg
ccagaacatgtgagcaaccaagaacacctttagaggaggtaagtgggaccaagttttattttaatgttttaacatttttactctAGAAATTTCAAGCATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAATTTCAAGCATAtactaaagtagacagaacagtatacacagtccctatgcatcccatcacccagcctcaacatagagcaattcatggtc
aatcttgtttcttcttcttcttctttttttttttttgagacagagtctcgctctgttgcccaggctggagtacaatggcgcgatgtgggctcaccgcaac
ttctgcctcttgggttcaagcgattctcctgcctcagcctcccaagtaggtgggattacaggcgtgtgacaccacgcccagctaattttttttgtatttc
tagtacagatggggttttgccatgttggccaggctggtcttgaactcctgacctcatgatccgcctgcctcagcctccccaagtgctgggattacaggtg
tgagcca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
905 chr6 42061342 42061643 RIP_Alu_chr6_042_01 0 - pAlu6-41954677 NA NA SINE Alu Ya5 ttctgatgacattttttacagaaatagaaaaaacaatcctgaaattcatatgaaaccacaaaagatcatgaatagccaaaacaatcttgagcaaaaagaa
caaagctggaggcatctcactacctaaattccaaatatactgtaaagctatagcaatcaaaatagcatggtactggcataacaatagacatatagaccaa
cggaacagaatagggaacccagaaataagtccacacatttatggtcaattgatcttaaacagagctggcatgtatgcacactggggataggacaatctct
tcaataaatggttttgggaaaactgcatatccacatgcagaagaatgaaatcggacctttatcttagaccacctcaaaatagattaAAGACTTAAACTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAGACTTAAACTGGccaggcatggtggctcacgcctgtaatcccagcactctgggaggccgaggcgggtggattacctaaggtcaggagtccgagacca
gcctggccaacatggtgaaaccccgtctctattaaaaatacacaaaattagccaggtgtggtggtggacacctgtaattccagctgctcggaaggctgag
gtaggagaatctcttggacccgggaggcggaggttgcagtgagctgagatcaagccattgcactccagcctgggcaacaagaacgaaactccatctcaaa
aaaaaaaaaaaaaaaaaaaaaaagacttgaactgagacctgaaactgtaaaactactggaagaaaacttagggagaaagcttcttgacattggcctgggc
a UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
920 chr6 44003465 44003466 RIP_Alu_chr6_044_02 0 - pAlu6-43896890 GAGTTCACCTTAGACTAAGAGAAGG AACCCAACTGCTGGCTATATGACC SINE Alu Ya5 agggcaaatctatatccttgtcctttctttgcagagataataaagttaatgggattatttcctgtgtacaagaatagggctgctaagaaaacattgtcaa
gtaaatgctgtttgcaaaggctaaactgaaaggccaaatcttccaccaggaggaagtaaagggtgtgtctacacgggctcacggggagcagtgccaccag
tgacttgatttgcctgagactgacttcccctctgcttcaccgggctctgattcatgcagatggctagagggcagggttgccaggcccatttccctggtct
ccaaggtaccaggtgagctggctagttggttagtctttggaaaaacagagttcaccttagactaagagaaggccccagctgaactttAAAGATTGTCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGATTGTCTGGataactttcctccttgtaaatggagaaactgaggatgcggagggggagctggtctcaggtcacatgaccagttgtagcaaggc
ctggtggggaagtagagacacagagatggaaaataacttgcctgggtcatatagccagcagttgggttgtaggggggaagctgaggcccagagaggagaa
atggcttgccaggctcctacagcctcccagtggcaaagtttgggatggaaccaggtcttcaactcctaggagacagcttgctctgtcatcagcccaagct
cccatcctcccctactacagagacggctcagggaatcactcaggtgtattcctgtttgccgagtctcaatcatccctgactgtgtcgccacacctcgagc
ccag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR NA 0 521 217 NA intergenic
926 chr6 44721476 44721778 RIP_Alu_chr6_044_01 0 + pAlu6-44614813|238284 GCTTAACACAACCCATAAATGGCTG AAATCCTCGTGAGCTGACTGTTTCC SINE Alu Ya5 agtgcaaacgccaagatgctggataggacattcagagtgtcccaagagactgagggctgcttcttttgcagaggagtctttcccttcacaaccagatttg
tgtcaacggtgagcgggccctctgcagtccatttagaaaattactcatacggtcctctttgtcctctttccattccttgtgtcctgacaactcttcacga
cccccagttattctttggaaatgtttcttggatctctcctggtctttttcttcatctgcaatgtgaggataatgatgataacacctttgcaggtgcttaa
cacaacccataaatggctgagctgagcttcagtccatgctttgggtccccagactgtgctacttccaaaaccaggcttgtctcctcAAAAAGACAGTTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGACAGTTGCtccttgagggtagggactgtgtctgccatgtcccctgtagcccctggcatagcctgctgttggaaacagtcagctcacgaggat
tttcctcatgcctgttcatggtggcttcagcctctctcgcctggcatagaaacccaagggtctccctgctccttctcccaacaggactgctgggcagagg
aagacccccttagttggaggtagccaggctgggttccctcctgtgcttgagagtgtgctcccattgacatgtccaccactgtggtttctaggagctgctc
tgtggatagtgtatgtgtatcccagcctcttctccatctttctcacccctcctcctcttcctctttgatagtctgagttccaggtccacatgtggttcat
tt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Genome comparison plus PCR|Trace comparison NA 0 508 206 NA intergenic
931 chr6 45368456 45368457 RIP_Alu_chr6_045_01 0 + pAlu6-45261894 NA NA SINE Alu Ye5 gcataaatctcacaggacctataaaacaaaaatacaattttaaaaaacaaaaacaaaaatacaatttaaaaaacaaaaacaaaatctaatgtatacaggc
aacgaataccatggtgaataaaatggtacctcacatctcaatactaatattgaatgtaaatggcctaaatgttccacttagaagatacagaaatgcagaa
tggatacgtatccaccaaccaattatctgctgccttcaggagactcacctagctaacatataaagactcacacaaacttaaggcagaggggtggaaaaag
acattttatgcaaaaggacaccaaaagcaagcaggagtagctattcttataccagacaaaagaaactttaaagcaacagcagttaaaaAAGACAAGGAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGACAAGGAGGGgacattatataatgataaaaggccttgtccaacaggaaaatatcacaatcctaaaaatacatgcacct
gacactggagttcccaaatttataaaacaattactaacagacctaagaaatgagatagacagcaacacaataatagtgggggacttcaatactccactga
cagcagtagataggtcattaagacagaaagtcaacaaagaaacaatggatttaaactataccttggaacaaatgaacttagcagatatatacagaacatt
ccatccaacaaccacagaatatacattctattcaacaaggtgtggaactttctccaagacagaccacacaatggggcacaaaatgagcctcaataaattt
aagaaaactgaaattatatc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
936 chr6 46075434 46075744 RIP_Alu_chr6_046_01 0 - Yb8NBC474|pAlu6-45968765 GCAAAACACAAGTTTGAACTGC CTGATGGGAAGCCTTACTGA SINE Alu Yb8 gggttcagatgaacaggtggtaacaactaaaaatggtgaccctgaagtcacaaatcagatggatactcccctcacggtgggtgtctccttcaaaggagca
tgtgcaccatcatcttattattacacagacatacacagtatgtgtgtgttttacatatatacagttaacctccaaacaacgtggaggttaggggcactga
cccctccatacaagttgaaaatccatgtgtaacttttgacttcctaaaatcttaactactaatagcctactactgatgggaagccttactgataacataa
cagtcaacacacattttgtaggctatatgcattatatatggtattattacaatacagtaaggagataacagaaaatgttatttAAAAAACCACAAGGAAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCTGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAACCACAAGGAAGagaaaatagatttactattcattaagtgggagtgggtcatcataagtcttcatcctcctcatcttcacattga
gtaggctgaggaggaagaggaggaggaagaggaggggttggccttattctctcgggagtgacagaggtggaagacccacttatacttatccatgtataag
tggatctgtgcagttcaaacttgtgttttgcaagggtcaactgtatacacacacataatatacaggatacacatataaattttatgtgtatatataatat
gtatacatacacttttctcctgagatttgaggtccaaaactgaaatacccacatccacatagtatttggcacacaccatatacccagcaaatgatattcc
tgtgtaaatc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 659 332 NA intron
950 chr6 47886199 47886200 RIP_Alu_chr6_047_01 0 + 14170 NA NA SINE Alu Yb8 cagctcggttcactggttcctattagccgtttatacgaaatatagcaattgctctgctggaggaggacagggctatttcttttctctagagggtcagctt
tcggggaaaaagcaggcggtagagctgaagcagtgaggagcccttaggtgctagaggttgaagcctctttgtggaaggaatgctgaagagatattgagtc
gtagattttagaaggggctgcttcagagaagagcagacgggtggatggtagccaccagaggtttctttttatctttacaaagaagccaaaaagaaacctc
atttctctttgttgttattaagaagttatgcaagtgagtaatgtgcaggtctgcagagcaaggttaagtgatgtgaagctagtttaAGAATTATTGCACA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATTATTGCACAattaaactggattaatcaatatccttattcttttcttttctgagccctgaaatgtttttgcttataag
gggacaccctcttgggaaatattttgaaatcaaataataaagctaatgtattgaatatgggattgtggaaataaattttgggtaattttaacagtctatt
acaagttaaactcattttttcctcctgaattgaatcctctgagattttggtagaagttggtgaaccaaaggaaacaaatgtggccaagagctctttctgg
aatgttattctttcctacacctgggtatccagatgtagtctcccatattttgtaaacagcactgctccaccctggctgtgtaatggagacacctggggaa
ttttgaaaaatgactgct Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
970 chr6 50560437 50560754 RIP_Alu_chr6_050_01 0 - Ya5NBC327 AGGCAGGTTCAATGTTCAAA TTGTCTTATTGTGCTGGCTAGA SINE Alu Ya5 cactctatttagatctttgtcatagatttcttccatcaaaattttgtagctttcagcatacaactgtgtatatgttttattcaatttatcactgtgttta
atattttgagtgattgtaaatggcactgtatttttagtttgctgtccacatgttgattgctgctatatagaaatgtaattgatttttgtacatttatttt
atatcctgtgacattgtttaactcatttattagttctggggatattttcatagatgccttgatattttatatttagacaatgatgtcatgtacaaacagg
gatagttttatttttccttctttaatctgtttacctttttttttcttgtcttattgtgctggctagaacttctggcaatatgttgaatAAGAATAATGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATAATGAGaatgggtatccttgagttattacaaaccttagggagaaataattcagtttttcaacattaagtatgatgtt
aattgtagatttgttgtagattcttcttatcgagttgaataatttcccttttactcgtattttctgagagtttttttttaaaatataaattgggtttttt
ttgccccctttttctttttgtttttctgcgtggattcatataatcatgtgatttttgttaccctgttagtatggtggactacattaattgatttttgaac
attgaacctgcctggaatccttagaataaagtgcacttggtcataatgtatggtttttaaaagtgtattgctgaattctatttggtaatattctgctaaa
aactttatatttacatt UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 668 339 NA intergenic
973 chr6 50873930 50874226 RIP_Alu_chr6_050_02 0 + 7113 NA NA SINE Alu Y atgaataagcatgtcctgacatggtcagcctcctccaatgataagaagccttccctttatagacctagcaaaatcctaaagtcttggaagaaggggagaa
acgtatgtatgctctgaagaaacctgtcatcaccacaccactggatcctccatctctacctatttgggaagaccctaaaagtaaagcaaaacttttgatt
caactttcctctttcaggccaaagaagaatagcttggtcttcaatcatggtcattccataaagcagtccaaactcggaagactgggaaaatacaattaat
atacttttgatacctaaatgtagtaggtggctggagaaactatcttactgtgttaagactctcagagtaatgtcgtcaatgagttAAGAATAGGTTTAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGA
ATAGGTTTAACaggaaatccaaaatcaaaatggcttgcatgagaaaaagtttatttctctcttatataaaagaagtacagaagcaggcagtccagggttg
gtgtagtgacttcactcatcagtagtccaggcctctttctgtccttcagctccactatctgaacacaagcttccatctttaagtttcaatacatggcatc
gtcatgcctacactgcagacaagaggaatgagaaagagacaaagaactaaatgtacccgtctcagatgagttgctccctttgaacagccttcctagagcc
tcacaccacattgcacttacagttcactggttatgtgaccatatgaccatcagaggctggaaaagacaatctttcagcaagttttattcctagtaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
976 chr6 51364259 51364561 RIP_Alu_chr6_051_02 0 + Yc1RG65|4148 GAAAATCTTTGGACTGGATCTCAA TTCTAGAAACAAATGCAGCTATGC SINE Alu Yc1 acctttctcagagacatttgccttgttagaaaatattatctttatgaaaagtaattatataatagtgatgcttcatacacattaggggaaataatttttg
atgaggaacttccaatgtctctcaaattttgttgccatatattggtcttgttctggttctttcattagttgcatttagtatttttcagctacttgtatgg
tcaaatcatcattattctgagtgagtagaaaatctttggactggatctcaaaacaggatttttcttgtggtattaagttcctattgttgtcataataatt
accacaaacttagtatctcaaaacaacaccaatagattatgttacagttctgtaggtcagaagttcaacattgttgtcactaggctAAAATTAAGGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATTAAGGTGTCagcatagctgcatttgtttctagaacttctagaaaaggatccattctcttgacttttccatcttctaggggccacccacattct
ctggcttatagactctttccttcattttcaaagccagcaatatgcatatctctgaccttacttctggagtgacatcttcctctgaacatagctaggaaat
aatctctgctgttaaggattcatgtaatcgtattggactgacccagataaccctggatacctcctcatctcaaggtctctattcttaattagatctacaa
agtttctgtgccatgtaaagttatatgttcacaggttccagggcatagacatctttaagggctgttattctttctaccatactcattataccataaaata
tt UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 57 514 198 NA intergenic
978 chr6 51625322 51625634 RIP_Alu_chr6_051_01 0 - Ya5ACA1532|pAlu6-51518660|13202 CCCCTTGTGGCACATATAGAA GCTTCATGATGTCCTGAGCA SINE Alu Ya5 tcaggaccatgaaaggtaagaaaattgtatctatcaactcagaaggataaccagaaaagtcattcttgtcatacaaagtatacagaaggttattcttgag
ggggagagatcacagtgttctatatctttgcatatctcacagtgccttgaacaacatttgtacatagtagaagggttaacatatacttgttaactatata
gaaatatgttgatattagatttgcattttccctgtatataaacataatatatttaatttagaattctttagaattgactaaagaatttacttttttcttt
cagagtacaaaattgtccaaaatcattttatatttcaagtccccttgtggcacatatagaatatttggccttatctagcctatttaAAACAAGAGAGATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAAGAGAGATAaaaaatgctcaggacatcatgaagcattcaatcaaaacatgaggctttttataggaactcggcttagtagcttt
gagaagaaggttgaagagagagtatctctgatttccaccccaacttcacctcaccccaccacagtaggtcttgttgagagccagttttcactaataaaac
ttacttgctttctgagttttccatgcaaatagaaataattccatcttctacagggtaaacatttcagatctggtggaatcgaaaagcaagaataatgaca
tgaataggagtgatctcttaattgggaaatttctgtattttcttgacttttctcctatagcctgcatttaagcattgcagaaaaaaaaatctctcacata
cctaactgggta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Genome comparison plus PCR|Trace comparison|Candidate screening NA 60 411 85 NA intron
981 chr6 51913997 51914311 RIP_Alu_chr6_051_03 0 - Yb8NBC447 GCAGACGCTCTGGGTAACTC AGGACAGGTAAAATGGTGGAA SINE Alu Yb8 tgagaattacgccatgataggtaacagatgaggaagaaatttgggcttgactgaagtaatgggggctgtctgtgaaggcttgcggcagtacagcccaggt
aatttgctgagcctgatgggtgtcagggtcagtccaagtgaaagcgaagagaggctgggatgaagggtgcaaaggaatagtaaagaaagcatgtttgaga
tccagaacagaataatgggttgtggagggaggtattgaggataggagagtatatgggtttggcaccacggggtggataggcaaaacaatttggttgataa
ggcacagatcctgaactaacctgtaagccttgtctggttttaggacaggtaaaatggtggaattgtaaagagagtttataggctttAAAAGGCCATGCTG
GGCTGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGCCATGCTGtaacaggtgagtgataacaggctttaatccttttaaagcgtgctgtgggatgggatattggcattgagtggg
gtaagggtgattaggttttaatgggatggtaaagggtgcatgatcagtcgccaaggagggagtagaggtgtcttatatttgtgggttaaggtgggggggg
atacaagaggaggatgcgaaggaggctttgaactggggtaaagggcagcagtgaggtgtggctgtaatctaggaacagtgagggaagcagataattcaat
taaaatgtctcggcctaataagggaactgggcaggtggggataactaaaaaggagtgcataaaagaatgttgtctaagatggcaccagagttggggagtt
ttaagaggtttaga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 918 590 NA intron
982 chr6 52037631 52037632 RIP_Alu_chr6_052_02 0 + pAlu6-51931068 NA NA SINE Alu Yb9 agcagacagatgcccacaagagagaaaaattcatatttaaatgcatcccattgtgccctactctccgaccttgtctaatgctgttgttttgagcatagca
gagcacactctaacgctcctgtcttcttagccagtggacgtgcaactgacccattgaatgaaggcgggcagtttgggggtttcttccagtagctataaca
atatcttgagggcagttatgctttctagaccatggtctcttctggacgccactggccatacagctggctggagctagaagtgcaatgtcactaagcacct
gaataaagctaagagccttcctgaaaggagagccttgacaatggtatcatggacccagggctcactgagtaagccagtcaaatagatgAGAAAGAATTCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAGAAAGAATTCAaacacttttatttctactcgccagcccatcatgattaaagatattcagagtttattgaacagccctggtggcttccttacct
ggctgaggggtggtgagcctcacatcttttcctggagcccgagtggtgcactcaatcttcctgggagacacgtgtctaatatcacatggaatgcctaaag
cgaattaaagaaatttatgtatgtgtgtgtgtgtaggtatacatatatatgtatatgtgtgtgggtatatgtataattatatatatatatatatatatat
atatatatatatagagagagagagagagagagagagagagacagagagagagagaggcagtcgggagatgtgatggcaagaccagactgaagtagacagg
ctccta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
988 chr6 52912997 52912998 RIP_Alu_chr6_052_01 0 + Ya5-MLS10 GTGCTTAGACCTCAGTTTATGGAGT GCTATTTCTTTGCTCACACCCTTAC SINE Alu Ya5 catgctggtgctgtgactggatcatcatgtttgtcatcacgcaacctgctgccattagagcagcactatcttcctggcaagttcaacatagtgggtatcg
ggggtggcttcctctgactcccaggctgcaggaacttcttaattgtagggatgttgctgattcttattttaaatgcctgaaataagaaagagtaaaatca
gggcctcaatagcagtcacaacctttaagaaaaatctcaactttgtcatgaatgaagggtgcttagacctcagtttatggagtacagtgtactgaatctg
cttaatccctcagcaagtgtttgctgggtatttctgggatggataataatacaactgctgacatgtttagcatgagttatattatctattAAAAAGTCAC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAGTCACaatcaggcagtgcatacccctaaaatattcatattcttttttttttttttgagatggagtctcactctgttgcccaggctagcatgcag
tggcacaatctcagctcactgcaacttccacctcctgagttcaagcaattctcccacctcagccttccaagtagctgggattacaggcatgcatcaccac
acctggctaatttttgtatttttagtagagacagggtctcaccatgttagccaagctagtcttgaactcctgacctctagtgatccacctgcctcagcct
cccaaaatgctaggattacaggcacgagccaccacatctggtcacattcatattcttgacctatcaattcttgttttaggaattattataaaggaataag
t Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intergenic
1002 chr6 54664408 54664729 RIP_Alu_chr6_054_01 0 + 52977|pAlu6-54557746 NA NA SINE Alu Ya5 caaattgttgggattataggagtgagccaccacacacccagctgggatgtgtttttgaaggacaatttaatctaaatctgtactgttcaatatagaagca
actagccacatgtggctattgagcacttgaaatgggcctattctaaattgagatggactacatgtataaaatatacatggcttactgagaagaaaaaatg
ttatatatctcaataataattttatattaatcacatgttgacaaatgtaacatgatgaaatgctattctggatatattggtctaaataagcattaatttt
tttaactttttaaatatggtcacaaaaaatgtaaaattacatatgtggctcatattatatttctattggacagtgttagtctgaatAAAAGAATGTCCCA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAATGTCCCAaaatacattcaaatatgaaatcattaaaatcaatatgcttaagtctcctccaccccaaaatctaa
caatgttttctgatacgtctaattctacagatagtggctcctgtgtcaaaactcaggttttcattgggtatttagaatgaaatgtctggaataacaattt
gcttcctgaggaaattttatagaagccatttgctagaataaataggcttaatctttccccttcaatagcctacaagagttcccagcatactcagtgtatg
ggttgttctaataacctcttcccatcatcccattgccttccaaatgtgctaaggatatataaagcagaatcaagttcattcgtgtacattaatttgaatg
tttctatgtaccatgtgctgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1003 chr6 54888281 54888593 RIP_Alu_chr6_054_03 0 + Yb8NBC290 ATTGTGGAGGGAAGTCGTTG GGACTGAAAACCCCTAACTCC SINE Alu Yb8 aaaaaagcatagatagttagatgggtagatgtgtggatggatagatggatgaatggcaggtagattaaaaagtaacacaactttttatcatattgttttg
acttagtctgatggctttctttatacacaaaaatgaaatactacttttgaattttaagttttcttataatgctacagtaattctccatgtaatttaggtc
tctacaccctagagatttctgtctatcctttctctgttgtccgttagaagcaattagccaatgagtcttgtcacatcatcctttacaactttacctccaa
cccttttattcctgctttcgccatccacgttggcatctcatgctagactaggactgaaaacccctaactcctctacctactggtAGAAACTCACATTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAACTCACATTTCTaactcatcctatgtatacaaacacgttaattttctcaggtattgttttaatcatgtgattctttgactataa
agttatgaatggttcactgttgtgccttatagaatccatagttagcctagcattcaacgacttccctccacaattgaccaaatttaccattacaatcttt
ctagctttatcgccatctctttcttagtagaattccatttcccaacaaaactgggcctctagctgtttctgctgtagtgctgctttgccgctgaaccttc
ctaaagcttctgctcctattccccaaactcctcttcatgcactattcatgcactattttacaattttccttatgcagagggatttttactccgtcctccc
tctttctctttc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 524 196 NA intron
1004 chr6 54972337 54972649 RIP_Alu_chr6_054_02 0 + 14392 NA NA SINE Alu Ya5 tattacacaaaattttattaaatgatacatagggtgttttctttttgcattattctttctggtttctaattccatggttaataaagtgtcatggcattgc
aaatgagacatgtctaagataaatttggcagctggccatatgatttgtatcttggggcctaggcaggcggggtttttgtatagatcttctgagttgccat
ataggcaaacccatattactccaagggtgcctgaaaactagttctattttgttactatgaagtaattgactcctacatgtgactctgaaaagggaaatga
ttatttgctatttcagtgagcccattgtagcgcttaatacaacctttctgtctaagtcgtttccttggttttatatttcattcctAAGAAAACACAAGTT
GGCCGGGCGCGGTGGCTCACCCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAACACAAGTTatctaagcatactttacaatgaataaccaagaacagaggaaaggccatggcaggtagaataaataaaaagaaa
agtttattcatatattttttacttatcatttgaatttggaacatgacttttttaaaaacaaacaaacaaaaaaccctactttactttcttagtccacttg
ggctgctgtaacaaaataccataggtggagtagctaacaaacaggcatttatttctcacagttctggaggctgaggagttcaagatcaaggtgtctacag
atttggctcttgataatgatcctcttcctagcttgcagacagccaccttctcactatgtactcacatgactgttcctcagtgcatgctcatggaaagaga
gagagagagaga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1007 chr6 55369993 55370300 RIP_Alu_chr6_055_01 0 + Yb8AC1354 TTGGAGGTTTCTTAAATAGATGGT TCCCAGAGTGGGTCAGAAAG SINE Alu Yb8 ttcttaagtggtttattttgcattctaacaagggggaagctttttttttttttttttctggagtcagagtcttggtgttttcacccaggctggagtgtag
tggcttgatcacagctacgtcaatctggaatgcctgggctcaagtgatcctcacacctcagcctccagagaagtttggactacaggtgtgcaccaccatg
cccagctaatctttaaactttttagagatggggtcttgctatgttggccaggctggcttcaaactcctgggctcaagtgatcttcccaacttagccttcc
aaagtgctggttttacaggcatcagccacattggaggtttcttaaatagatggtaatccaatatgcaaattggagactaaaactattttAAAAAAATGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAATGCCttaactgtatttgagttcagactccctgagaatgagttttctaatgacaaaatcctcacttttctagtcttgtgttgggctg
ctgctttctgacccactctgggaggtttactactggtctgaaactccaatctatctctctactgattattgttaacacagtgctcaaatcttggctccca
ataagctgtcttctgaatagcagcagccctaggtggagagataactgaatggaacatttgctaataaagtcatgtacctcgtaaggacattctggtcaat
gacagacagacagactatacatcagtggtcccataagattataataccgtattttttatagtatcttttctatgtttatatgcttaaatatgcaaatatt
taccatt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 493 175 NA intron
1058 chr6 62111953 62112258 RIP_Alu_chr6_062_01 0 - Ya5NBC171 TCTAGAATTACAAGTGCAAGCCATC CTTCTCATCCCTGCTAACATAACAT SINE Alu Ya5 ctctcttgttgggggctaataacgcagctggtgaccttaagtggaagccaatgctcatttaccattctaaaaatcctaggggccttaagaattatgctaa
atccactctacaaatgctctatgaatggaactacaaagactggatgacaaaacatctgttgacagcatggtttgctgaatattttaagcccaatgttgat
acatactgatcagaaaaaaattttttttcaaagtgttactgctcattggcaatgcatctgttcacctaagagcgctgtttgagatacacaaggagattaa
tgttcttctcatccctgctaacataacatccattctgcagcccatggatcaagggataattttagctttcttgtttcattatttAAGAAATACATTTTGA
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAATACATTTTGAgctgggtgcgatggcttgcacttgtaattctagatactcaggaggctaaggtgggaggactgcttgaggctataagaat
gagaccatcctgagcaacatagtgagactttgtctctaaccaaataaagaaaagaagagaaaaagccagagctcagcaaggctgctgtagacagactgcc
agatttttcctctctggacagggaatctctgaaaaaaaggcagcagccccagtcagagacttatagatagaccgccccatctccctgggacagagcacct
gggggaagggacggctgtgggcgcagcttcagcagaattaaatgtccctgcctgatggctctgaagagagcagcggacctcccagtacagtgctcgatct
ctgct UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate sequencing|Candidate screening NA 55 451 130 NA intergenic
1082 chr6 65241883 65242187 RIP_Alu_chr6_065_01 0 + Ya5ACA1549 CTCTTTCCCAATGTCTCTCCTT TGTGCCAGGAACTGTGTTAAG SINE Alu Ya5 tggtacttttcacttatgttcctctttttggctacagtaaaggagaggaaacacatcattcaggaaaatggacagccacattttctttgaagctgagctg
attctcctgggtctcttggccatgaggcaatggccaacgggaaatataggtgagaaaacataaatttacaaatatctttctgttttattttacattataa
ttaagtcagcagaatactatcaagtttgaattaccaaagatatttttgtgttcacaagttcttataactctttcccaatgtctctccttaatttgacaag
ttttctcatgtggtatcatacactgtatttctgcctcatattatactccacaaataggttctacttcatagtttgctctgaatagtaaatGAAAAGAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAAAGAAAAaataccaaatacttaacacagttcctggcacatagaaaacacttcatatcaggtaaatatcatcatgattgtgtcctcggcccaat
tcttgctctattaaaaaagtcacttaaacacccaaagccttaacttcctcttttttaaaatggtaaaaggaataaaaaaaaatcatttaatttgtatgat
tgttgtattaaaacattactgttgtgatgttttttaagagacaagctctccattgcccaggggctggagtgcaatagcatgttcatagctcactgtaacc
tcaaactcctgggctcaagctatcttcccacctcagcctcccaagtagctaaggctacaggtacatgccagcatgctcagttatttttttgaaataactt
ttgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 479 165 NA intron
1098 chr6 67291996 67292326 RIP_Alu_chr6_067_01 0 + pAlu6-67185333|Ya5ACA1555 CGGTTGGTTTCAATGTCCTT TTTGTTGATCCAGTTTTATATGGC SINE Alu Ya5 cacataatcaaaacctcctgcactttagccagttataccgtggatttggatgagacaccaggaaacaacacttgtattcttcgcagtgcccttcatgtat
tgatggtactattacatccaggacatttaagtcaatatattcatagtatagtagacctgaaaaatactagagtgattttccatgtaactttctgattttg
ttcattaaaaaaaaagagttctctagagatcatttgacttaaggtaatagctggttggtcattcagctgagaacagaatacggatcctggatctctgtaa
aagccactattctacaaatagtagttacggttggtttcaatgtcctttaaaaatagcatgataatttttttacctaattctataaatAAATCAAATTGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAATTGAAaataaagccatataaaactggatcaacaaatatctatttaaatttactctacttaaa
gtaacactagtctgagaatattgttttcttttatttataaataatgcatgactgataattataaataattatctggtgattcagtaagatcatccaaaga
ccagtatgaacaaaataatgtaaaactaaaattgcattttctataatttaaagggaaaatctctgacttctgagtttgtattttggtaagctaaatgtgt
ctgtttgcttccattcactattgcattgaaatatgcaataacgaagaaaaaaagtatacatttggaacaacaattaaatgcgtttccttaccttgcacga
agtaactctaaatatgattaattaaagcca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 446 103 NA intergenic
1106 chr6 68316921 68317226 RIP_Alu_chr6_068_01 0 - pAlu6-68210256 NA NA SINE Alu Yb3a1 tagttctagatccttggggaattgccatactgtcctcgacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttcttcacat
cctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatgg
ccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcatgatcaagtgggcttcatcccggggatgcaaggctggttcaacatatgca
aatcaataaacgtaatccagcatataaatagaaccaaagaggaaaaccacatgattatctcaatcgatgcagaaaaggcctttgacaaAATTCAACAGCC
CTGTCCAGGCGCAGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACAAGGTCAGGAGATCAAGACAATCCTGGCCAACAT
GGTGAAGCCCCATCTCTACTAAAAATACAAAAAAATTAGCTGGGTGTGATGGCAGGCACCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGAAGAATGG
CATGAATCCAGGAGGCAGAGTTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCAGTCTCAAAAAAAAAAAAAAAA
AAAAAAATTCAACAGCCtttcatgctaaaaactctcaatatattaggtattgatgggatgtatctcaaaataataagagctatttatgacaaacccacag
ccaatatcatactgaatgggcaaaaactggaaacattcgctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgtt
ggaaattctggccagggcaatcaggcaggagaaagaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgatt
ttatatttagaaaaccccatcatctcagcccagaatatccttaagctgtattagttttaccttaaattaaaatatactactagagcaaattacttttaga
caaag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1106 chr6 68370789 68370790 RIP_Alu_chr6_068_02 0 - pAlu6-68264208 NA NA SINE Alu Ya5 agccccaaagaaatgctctgttttaagtactagaggcttttgagacaagattcagtttgcaacaatttacctgtttaattttttgcctggtggagtggag
aaaagatataactaactatctttgtacaatttaaaggggaaaaaagtcccattacattattttaatgagataatcttgaataagcccctcctaccagttg
agaatcactgaccgaatagataaaaattaaggtcattttttagatctcatgatttaattttattagagcaaataagacaggacagcactttttcttagtg
aaagttagtacagaaattcaaaatagaaatatataaacactttcttatctattttagattgataaatgtgtatttaaacttAAATGTATATACCAAATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGTCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATGTATATACCAAATCAaattctagaagtcagttccataaaaaaacaaaataaatatgcatgcataaaattgcacagcttgctaaattatccctatt
taatatcttccacttatgtctgaacaaccaactcataagctatattttcagtagcttttgaagtttaattgaacataagatctaaacacattttaagctt
ttttattgtttaagaataagttctatatggcttgacaggattaaaacaataaactccaatcattctctgaaccagtttggttcagagaatgggtaatttc
tgattgagtttcctttagatgatcaacataatctttcataaatgtcatatgatgaattgttaataaaaaagttacaatgttaacacaattctagaaagaa
t Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1152 chr6 74320603 74320924 RIP_Alu_chr6_074_01 0 - Ya5ACA1561 TGGATGAACTGTTGAAAAATATCAC TGAAAAGAGAGTGGGGCAGT SINE Alu Ya5 agtctcagctacttgggaggctgaggtgggaggatcgcttgagccctggaggcagaggttgcagtgagccaagattgagccactgcactccagcctgggt
gaaacagccagaccctgtctcaaaacaaacaaatgacaacaacaacaacaaacccatagtgtaacttgaaataatgtaaaaaaaagttattaaaaaacat
aatttatggccgggcatggtgactcatgcctgtagtcctagcactttgggaggctgaggcaggaggatcacttgagctcagagcttcaaaaccaccctgg
gcaacatagtgagattttgtctctattcggttaaattttttttttaaaaagacacactttttaagaaaatatggatgaactgttGAAAAATATCACTTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAAATATCACTTTTtttttttttttttgagacagagttttactctggcacccaggctggagtgcagtggcatgatca
cagatcattgtagcctgaaactcctggtctcaagcagtcctctcacctcagcctcctgaatagctgggcacacaccaccatgcccagctaattttttaga
aaatattttgtagagacaggggattgctatgttgctcaggctggtctcaaactcctggcctcaatcaatcttcctgcctcggcctcccaaactacaggga
ttataggcatgagccacctcacccactgccccactctcttttcatactaaatgcatataaagctgggtgcagtggctcaagcctgtaatcccagcactat
gggaggctgaggcgggtggat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 673 336 NA intergenic
1152 chr6 74398469 74398470 RIP_Alu_chr6_074_03 0 + pAlu6-74291907 NA NA SINE Alu Yb7 ctttggccaaaaggcactgacacaaggaagcttttcctgtctgccccaggctggctgaggactgccaccttctctgttccaaagatgtcctgtaccttac
agcactgcattatgcaggctatattgtattgaaattctgtccatccatgtctgtctccctctggagaccttgggccccacaggaaccatgttttattttt
ttcctcttattcatttttaagtcctcagctgacaaagaacctaggtcatagtaaagtttcaaaaaaaaatgtttaaagaatgaatgagtagatgctgcac
atttcttgggtccaagatttaaagatgcagcttcacgtaacacatcattttacaacactgtcaactataacgtcatgtgctttAAGAATGCAGTCTGGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCTTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATGCAGTCTGGTTGgtacaaggtgactcatgcctgtaatcccagcattttgggagtcttaggcaggaagactcctt
aagcccagcagtttgagaccagcttgatcatcatagcgagactccgtctctacaaaaaataattagctaggcatggtggtgtgcacctgtagtcccagct
actcgagaggctgaggtgggaagactgcttgaacctgtagggttgaggctgcactgagctgtgatggtgccactgtactccagcctgggcactgagctag
actcaaaaaaaaaaaaaaaaaaaaaaggaatgcaatctgggcttctcctcctaactctcttgcctctgaatattcctttttccgaagtgtgtcgagaaac
aacctaagtttggagagatta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1153 chr6 74477983 74478280 RIP_Alu_chr6_074_02 0 - 1968|Ya5ACA1570 AGAAAACTGCACATGTACCC ACTGTGAAGCAGAAACATTG SINE Alu Ya5 aactttaaaatacaatttttttttttttgagacggagtctcgcttcgttgcccaggctggagtgcagtggcatgatctcggctcactacaacctccgctt
tccaggttcaagcaatcctcctgcctcagccccccagtagctgggattagaggcatgcgccaccatacccggctaatttttgtataaaatacaatatttt
ttagagagtgaaataatagacattggagattcatatggcagggaggtaagggataagaaatgacttaatggatacaacatacactatttggctgatgttt
atactaaaagcccagactccaccactacccaaaatatccatgtaagaaaactgcacatgtaccccctaaatctataaaaataaaatattttAAAAACTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AACTTAaagtacgattttaaaaatacaatgtttctgcttcacagtttaatgtcactttaaggcaaaaaaactattgggtaaattcagtctacacagaaaa
cacaagtattctgagcagaacaaaaccaaacaaaaaatctcctttggtcccttacatactccttttatatttttctctcttatttccctttgcttacaaa
tatcttaataaatttgagtttcataaacaaagttttgttccattgtctaaaaaaaagcaggttaaacacaaacattgagtaaaaaaaaaagcaggtcaaa
cacaaacctactaaaagtaaaataaataaaatggtacactataaagcaaatgttaggttaagtacaaatgaaaaacccagagtcaagcaaggttctt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison plus genotyping|Candidate screening NA 0 0 0 NA intron
1164 chr6 76014519 76014823 RIP_Alu_chr6_076_01 0 - pAlu6-75907854|11446 NA NA SINE Alu Ya5 gtattacaaagtgttacattcatagtaggtaaccggtaattattgttcaatggggaatgactcatgttcatgttgatgaaaagagtcaaactctataaaa
tattttaagagatttattctgagccaaatatgagtgacacagccctcaggagatcctgggaacatgtgcccaaggtggttgggatacagcttggttttat
atatttttgggaggcatgagacatcaatcaaatacatttaagaaatacattggtttggttcagaaaggcgggacaactcaaagcgggggacttccaggct
ataggtaaatttaaacattttctggttgacaactgattgagtttatctgaagatctgggatcaatagaaaagaaatgtttaggttAAGATAAAGGATGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGATAAAGGATGTGgagactaagttttattgtgcggaggaaactctcagcggactgcagagagagcaggttataaaatgtgtcttatcagactta
aaagagtgcctggctcttagttgattatctcctggatctggaaaggggaaaggagattctctatagaatgcggatttttcccacaagaaactttgtaggg
caatttcaagatatggcagagagacatgttttggggtaaaacattttgattttcttcctccttatgccagagtcacatgggaaagtaagtcataatatac
agggttaaataaaacccatctgatgagaatttgtggtttgtagggcaggactccccagaccctttagatatgaatttgggcaagataaaaaaaaaaatca
gaga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA promoter
1179 chr6 77976839 77977132 RIP_Alu_chr6_077_01 0 + pAlu6-77870174 NA NA SINE Alu Ya5 aatgtgattactccagtattgttccttttgctcaggatggctttggatattctgggtcttttgtagttccacttaaattttaggatttttttctatgtct
gtgaaaaatgtcattgatatttggaagggattgcattgagtctgtagattactttgggtaatgtagacattttaccaatgttgattcttccaatccacaa
acatagaatagttttccattttttcgtgtctgcttcaatttctggtatcaactttatagttttcattgtagataactttccctcctttgatttagtttat
cgctaggtatgtgttttttttactttgtaaatggaattactttcttaattcctttttgggttgtttgctgctggaacataaaAATGCTACTGATTTTTGT
GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATGCTA
CTGATTTTTGTatgctgattttgtatcctgcatttttattgaatttgtttaccagtccaaatacttttttggtggagtctttagatttttcagcagtaac
atttttgtgtgtatatttctatcccaaatcaatttattactacgacgttatgctttttggtatttcttttttaaaagagcagttaatggatgttgtagaa
aagcaaagctcaatttcaccttccatttttaaaataaaggcataaaatcattgtcctgtgattgattgttcacaccttttagtttcaacttttagttttc
ttaaaatttttgatacaagatatttaattgcaacatagttgaaacatttagcatggcaccaagaagtttatttgtttattttttcatttgttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1183 chr6 78420990 78420991 RIP_Alu_chr6_078_01 0 + pAlu6-78314427 NA NA SINE Alu Yd2 gggccagttttccaatctctgatttacagcatctctgagatttcttactgaacagggagtgttatagataggaatgattgatggctaaaagctccataaa
ggcagagatagacttgttttgttgactgttatatccctgtgtctaccacagtgcctgacaggttggggataattaaatatatctgttgaataaaagagta
aggaatggaatatttgatggaaaattacctaagttaggttaaatggttctatattcagattttcaggttctctgacatgcactgtatggtactgccattt
tggttagagcaaattcagtagaccttccttatctgtgggttctttatccatagattcaaaccaaccacagattgaatatgtttaaaaAATTGAAAACAAT
GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATTCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCGTCTCTA
CTAAAAATGCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA
CGTTGCAGTGAGCCGAGATCCCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATT
GAAAACAATaatacaacactaaaaaaaaaatgaataaaagtactactactgtttattttttatgttcattattataacccttgcattttggaaatacagc
aagatatattgaaatgcaatattttttcgttgataatcaaattgaatttagatgcatctggttgatggaatattgtatatacaacttctctctgctgtcc
ttgtcctttacattgggattttgtagaatgagtcaaattcacattttaatcctctgttcttcagacagtaagtttttgagtaccttaccatctctatgtg
tttaaaacagggtggctagaaaagaagctctttttctttttatttttttgttttgttttagtttttatttttattttttattatattttaagttct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1220 chr6 83331465 83331466 RIP_Alu_chr6_083_01 0 + pAlu6-83224902 NA NA SINE Alu Yd3a1 cagacttctgtctagaaactgacaagcagattctaaaatacacatgttattgtaagggactcaaaatagccaaaatagtcttgataaaagaaaacatatt
agtataattcacacccccgtgctccaaaccttacggcaaagcatcagtaatcaagacaacacaatactgatgaaggtaaaatatatagattgatggaaga
gaattgagagtccatatataaaactatgtatctatagtcaatggattgttaaagtggtgccatgtgcaattcaatgaggaagagacagtctttgaacaca
ctggatcaacaacgtacacgtgggtcgccacttgcaaaatagtaaattggaacccttaccccaaagcatacaaaaatattaactcaAATGAATTAAAGAC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAAGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTATTAAAAATAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAATGAATTAAAG
ACatacatgcaagagctaggataaaccatatgcgaaaatcttcaggattttggatctagcaaagaaatagctgtaacaccaaaaacatgagcaacaaaat
aaaaattagatatttaaaatttcttaaaaattaaagacattggtgtttcaaaggacagccaagcaagtcaaaaagcagctcaaaaattatgataaaatat
ttgagaaacaaatatctatatgtctgcatatatatgtatcttgaatatagaaaaattgttttaactcagtaacaaaaatcccaactcaaaactgataaat
gataggaatagatgtgtatcccaagaagatacacgaatggtcaataatcccataaaaagatactcaacagcatcactcatcaggcaac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1241 chr6 86083084 86083388 RIP_Alu_chr6_086_01 0 + 10265|pAlu6-85976421 NA NA SINE Alu Ya4 ttgaagacatggagcagtgtgcttgcagttacactgctactgtgtggcaaagccagggctcttgtgcatcaccccacacttcattccacaggagttcatc
taattatcctcacgaattacaccatggaaagtcttcccttgcacacctcagccattctactaaaagcttctgagttataaatccaaaagggttgttcatt
tatatatcattagcttacattaattgagcgcttactatattatatgtctggtatgctcgtatttttcatgtattgtctcttctcattacaaggtgatatt
gtttgaatatatgtccccaccaaatctcacgttgaattgtaatctccaatgttggaggtgggacctggtgggagatgtttggatcataaGGGTGGGTCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAGGGTGGGTCCCtcatggatggcttgagccatcccttggtgataagtgagctctctctcagagttcacacaagatatggtggtttaaaagtgtgtgg
caccttcccccacaactatctctcccttgctcctgctgtcatcatgtgatgtgcctgctttcacaacaccttctaccatgactgtaagcttcctggggcc
tctctagaagttgagtagatgccagcatcatactccctatacagcctacagaaccatgggccaattaaatatcatttcttataaattactccgtctcagg
tttctatttatagcagtgcaataatggcctaatgcagaaaattggtaccaaggaatgggacattgctataaaaaaaaaacctgaaaatgtgaaagcagct
ttgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1259 chr6 88376976 88377289 RIP_Alu_chr6_088_01 0 - pAlu6-88270309 NA NA SINE Alu Yb7 caagtcctaggatctgggctgggtgcgatggttcatgtctgtaatcccagcacgttgggagactgaggagggcagatctcttgaggccaagagtttgaga
ccagcctgggcaacacggcaaaaccccatctctacaaaaaatacaaaaattagccgggcatggtggtgtgtgcctatagtcctagctacttggggacctg
agaagggaggactgcttaagcccaggaggtggagggtgcagtgagccaagatcatgtcactgcgctctagcctgggtgacagagccagaccctgtctcaa
aaaaaaaaaaaaaaaaaagaaaagtcctaatatatagaactcttagaatcaatgaaggaaaaaagatcctatcaaagtagaaattTAAAGTATATTAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA
AAATAAAAAAAAATAAAGTATATTAGTAaattagctgggtgtggtggctcatgtctgtaatcctagcactttgggaggccccaaagagcactaaggaagg
cagatcacctgaggtcaggagtttgagaccagcctggctaatatggtgaaaccctgtctctactaaaaatacaaaaattagctaggcgtggcagcgggca
cctgtaatcccagctacttgggaggctgaggcatgagaactgcttgaacccgggaggcggaggtggcagggagttgagaaggcgccactgcactccagcc
tgggggacagagcgagactctgtctccaaaaataaaaataaaaataaagtatactagtaaattatttaacacaatatatagctttaggcaaatgtagcta
taactattaaaac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1267 chr6 89480885 89481179 RIP_Alu_chr6_089_01 0 - Ya5ACA1441 CAAATGCAATTGGAGTGTTCA ATTGGGCTAAGCACAGGATG SINE Alu Ya5 tgtacattgattttgtatcctgagactttgctgaagttgcctgtcagcttaaggagattttgggctgagacaatggggttttctagatatacagtcatgt
catctgcaaacagggacaatttgacttcttcttttcctaattgaataccctttatttccttctcctggctaattgccctggccagaacttcaacactatg
ttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtt
tgtcatagatagctcttattgttttgagatacgtcatttcacaaatgcaattggagtgttcagtttacatttttaaaagtacttttAAAAAGTACTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
TACTTTTActttcagcttgagtcactcttcccaggctttatccaggtggcttaggttagctagggctgtgtcccgtgatgtacagtccctttacacaatg
ttggagataaaacttggcctcatgtcttgcttcatattcccacagcctctcagagtcctgtggacaatgactagggagacaaaccatgcaagcaacatat
tttttaaaaggtcagtttcaataatgacttaattttaagttataatttcatggaacactttcatcactttctttttcacagtattttacccagttattaa
ttaatctaagtagtgtatcttcgggaggtaagacagttatttccattttatagatgaggaaatcaagaaaagtcatttagtttatgacttatcc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 849 541 NA intron
1280 chr6 91182586 91182587 RIP_Alu_chr6_091_02 0 - pAlu6-91076011 NA NA SINE Alu Yb7 caagtgttcctaagatagacatgtaaccagcaaagcatcactgcccagagtgcttgaagagctcctacaaataaataggataaagtaaaccccaaagaga
aaccaagcaaataattcacagaagatgaaaacctgaatggctaaaaaacatttaaagagatgctcaccttcaatactaatcacagaaatgcaaagtaaaa
cagtggcaaaatgttcatcatacattactaagtattgggaaggttgtgagggaattagaattctcattcagtcctgatagaagggtaaccattttggaga
gcaatttagtagcacccagaaagttgaagtttgtacaccatacacagattagaaatactaagatacaagtgcacaagaataactacacAATAATATTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTCGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATA
AAAAATAAAATAAATAATAATAATAATAATAATAATAATAATATTTTAGgacatattgtcatagaaaaatagtgaagcaacctaaatattcatcaactgg
ggattgaaacataattatgatacattcctagatggaaactatgtagtggtttacatgtgaatgagctagttctacaagcatcaaaataggataagtcttg
gaaacacaatattgaataaaaacagcaaaatactatttatttaaacattttaactaccccaaacagcactacaggcaatattgtttgtggatccatacat
ataccataaaattcaaaggcatgaaaaagaaataagaaccaacttcaagagaatagttagctctggggtggaacaaagagaagattccaattctatctgt
aattttttcatacctttaaaaaatcctacagggcatg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1281 chr6 91294311 91294617 RIP_Alu_chr6_091_01 0 - Yc1NBC63 GGTACTCAGTAACACATCAAGA AAGCTGGGTGGTGGGTTCAC SINE Alu Yc1 tacctgtcactgtttattatcctgaatccattgtggcttttcaagacctaaaatcatataattttagcactatatggaacacttctcatcacattcttaa
cccagccccaacccctctccagataaagagaggttgaagtgatctgaagcagacattacagcataattagaactcacatacgatggattctactcaaagg
tacttttgtattgcatttcattttacttgttgcagtcttgaatttgagtgtttgtatatatgttgaagctagatataagattcttcatgaatttatttta
agttttattttctataactccatgttcttttttaagtctcttctttggtactcagtaacacatcaagaaaaaaaaggtgctttttAAAAAGTCCTTATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGTCCTTATGAaacccattttagtttctgtgtcctttgaaaggctttaatatatgaaatataaatatgtagacaagaatgtatataatgt
ataagttatgaaaataaaatgagcacttgtgaacccaccacccagcttaaggaatggaacattagcaatcccagtgggggttggtccctgtgtgttcctc
gcctgtggccttccctgtcatttccccaccaaccctcagtgccatgttctgtcatatgtcatgtttccagatatcataaataccttttatctgattaaga
agtcctcttcccactgggcacaggggctcacacctataatcccagcacgttaggaggctgaggcaggaggatcgcttgagcccaggagttcaagaccagc
ctgcac UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 502 181 NA intron
1293 chr6 92864731 92865041 RIP_Alu_chr6_092_01 0 - pAlu6-92758067|239078 NA NA SINE Alu Yi6 gtatagaagtgaaaaagagtagcatcaatagatttaatacaacaaatattttaaatgttaaactcaagttcagcatggttacttaaattttagtgctgat
ttaccaatgacgcagtccataagactacaagctctgtttttatctgaaatttggtatcatataaattactttcctcagagatttaaaaccaccttttgaa
tgttgttttgttcatagcacaccttgactctttagcattttgaagatatgcgattgtgccttaagcaaaacctgctcttgattctttgataaattgattc
aggccccagtgggcgcggtgactcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcagaagattAAGACTATCCTGGCTA
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
AAAAAAAAAAAAGACTATCCTGGCTAacaaagtgaaaccccatctttaccaaaaataccaaaaattagctgggcatgctggcacatccctgtaatcccag
ctacacaggaggctgaggcaggagaatcgattgaagccgggaggcggaggttgcagtgagcccagatcacaccactccactctagcctgggcgacacagc
aagacactgtctcaaatatatatatatatatatatatataaatttaatttaaaaagataaattgatttatcaggttaaatctttttttaaattgaaaagg
gttgtcttgcttgttctgtttttcattaaagtaatcagtctatctatcagcccagaaatcagaaatcgatttggttacattatcttggtttccattgact
cagggctgag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1298 chr6 93581274 93581473 RIP_Alu_chr6_093_01 0 + Yi6AH116|6416 TGTGCACAATTAATGGGATA TGCCTTACTGTTGTTGAAAA SINE Alu Yi6 ctcagcctcccaagtagcggaaactacaggcacgtgccaccatgcctgactaattttttgtagtttttgtagaaacgggtttctgccatgttggtcaggc
tggtctcgaactcctggactcaagtgatccacccaccttggcctcccaggggtctgggattgcaggcatgagccaccacacccagtcataaaatcacatc
ttaaagtatttggaattggaaaccctcttagaattgatgtgcacaattaatgggatagggttctttttttctgaaaaattattattaaataagcagtgta
cccttcgattaatgcttttttaggatcgtgcaataaaaatgttttaaaataatacataaataagaaaaaatcacttataatatcAAAACATAAATGACTA
AACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCTGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAACATAAATGACTAgaaaatgagacagctttttcaacaacagtaaggcattattgaaaataatttttcattttgcaacatacaatgaatgtagaacata
aaagttatgtattatagaaattcacaatttcaaaacatattgctataatgaaagttctctaatacggtgaaaaggcttatttctcatataatatagggag
aaaaaattctggtattcaatttaaactatgaccccaataaaggaatcactaagagagaatgttgtcccaatttagtaagacaataaagagaatgagtgcc
acaaaatattgaaatagtatgattaatctctaagaaagagatttagaggtactataccctctcattgctcagatttcttttgtcctataactcatgaat UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 55 413 198 NA intergenic
1314 chr6 95630413 95630723 RIP_Alu_chr6_095_01 0 + Ya5ACA1583 TTGAAAAGATAAGCTGCACA TTTGCATTTCCCTAATGACT SINE Alu Ya5 aatctcaaaccacacctcatactttattcacaaatacctcaaaatgggttatacacttgaatctaaagtgtaaattgataaaaatagtaaaagaaaacat
agaaaaaaatctttgtaaccctggattaaacaattttttctttaaatgcaatactaaaagcacaatctataagatgacaaataggctttaattaaaatta
aaaacttctgtaaaagttcctctgatcagttgaaaagataagctgcacacagggagaaaatgtgtgcaaattatatatcccacaaaaaaacttgtatgca
ggctacataaggaactctctaaactcaacagtaagaaagcaacctaatttaaaaacggacaaaagatttaaacagatacttcagcAAAGAAGATATACAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAGATATACAGatagtaaataagtagctgaaaagatactccaactcatcagtcattagggaaatgcaaattaaagtcacaatgagg
taccactacttccatattaaaatagcttaaacctaacaaactgacaataccaaatattgctgtattaccagttaagtctcagatacacttttttcttcat
tatctaatctgaaatcagtctcaattttcacatccataaaatgtggctgctaattaatgcttgtcctcacttgcttattgtgctgttgtgaaaaacaaaa
gcaattatgtagaaaacattttgtaaaatacaaagtaatttactaacataatgaaaaattattattgtggaatttcagtgaagatttgagaaaaggttca
aaatgcaaat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 556 229 NA intergenic
1326 chr6 97124402 97124403 RIP_Alu_chr6_097_01 0 - pAlu6-97017829 NA NA SINE Alu Yb7 taagcaaaaactgaaggaatttgtcaccactcacctggccttaccagaaatgcttaagtgattttcacttacatctggaagtgaaaatcactgtcatgaa
aacacaccaaaagtataaagctcattggtagagcagatatatgaggagaaagagaaaagaatcaaaccttgtcactacagaaaaccaccaaaccacaatg
attaactataagagaaaaagaaaggaacaaaagatatacaagacaacaggaaaacaacaaaatggtggatgttaagtcctcacttatcaataataacctt
ggctgtaaacagactaaattcccaactgaaaagatatagactagctgaatgaattaaaaaaaaaaaagacctaagtatatgctgcctaaAAGAAACTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAACTCACttcacctaaaaagacacatatagaataaaaataagggatggaaaaaaaatccatacaaatggaaaccaaaagcaaggg
agaatagctatacttatatcaggtaaagcagactttaaacaaaaagagacaaggttattttcacttcagcaagaagatgtaacaattgtaaacatacaca
catccaataccacaacatccagatttataaagcaaataattaaacccaaaggagaaatagatttcagtacaattatagctggggacttcaacacccctca
gcattggacagatcattcaggcagaaaattaacaaagaaacatttaatttaaactgcactttagaccaaatgaacctaccagacatttacagaacatttc
attcaacagct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1338 chr6 98797934 98798250 RIP_Alu_chr6_098_01 0 + Yb8JW830 CTTTGCTGTGCCAGGAATTT TAGCATAGTCTCTGGCATTTTGG SINE Alu Yb8 tcagtcctctgggctgaaacgaggaccagataatattttagcaaaaaaggtgttttgttttcacgctttcatcatgcaaaaataacccaactaatttagc
cctaacttccaaaaaatattcagttttatgcagaaatcaactatgtagatctcaggccaaaaggaatatttatcagaaaactctgaagcaaagactttta
taaaaatatactcttccataaagttttattttcagtcatctttgacatgatgtaaatgaattactgcattattgcttcctagttatctcttatctttgct
gtgccaggaatttgtgagttttttaatataaattttgatcatttaaaattataaacccctggggtcaggcttaaatattgtaattttaaaatAATTATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATTATGAaatataatagcatttcacatttttggtgctcccaaaatgccagagactatgctaaatactgtgtatatatcatctc
ttttaagtgtaccacaatctggagagggaagtataattgttatctccaatttgtaggtaaagagactagcccttaatgggattaaataatttgtactaag
taatactaagcaactgtatttactgggtgatggagtcacgattcccctaccccatgcctctctgactccatactccacttgaaagtagcatcctctttta
gaacagccccaatatagccctaatcaatatagttatagacgcttccccagaacagacagaaaaatagtcagcaggttcatgaaaaatgttaaacattact
aatcatcaggaaaatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 485 161 NA intergenic
1384 chr6 104848924 104849231 RIP_Alu_chr6_104_02 0 - Yb8AC1371 GCTGGAGGCTGAGAAATCAC TAGTCTGGATGGGCTCCACT SINE Alu Yb8 tctgtggggatcacagaaagaataatgaaggagtgaagtttggtaatgaatgaatgaatttggtaatgaagaacaattgcatgttctttgtttccctgta
tctacatccaagcaatgtgacttcacatctgttctataaagaggtgatctatttccccaccccttggatctggcctagccttatgatttgactaatggag
taatagaaaatggaatgtaagatgagacttgagaagttccctcacattgaggcttattattttgctttttggaactcctggggctagcctgctggaggct
gagaaatcacatggggagaggtcttatcattcctagatgtcccagctgataccatcatagcccagccagctgacctttaaggtttgAAAGAATCCAGATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAA
AAAAAAAAAAGAATCCAGATAaactcagtggagcccatccagactagaactgactaggagaacccagctcaattttctcatctgcagaatcatgagctaa
ggaaatggttgttgttttgaaccactcattttggaggttgtttcttatatatcaaaagcaaattaatgaacacttaacatcttagttaattggagctcag
gactgttttgtggagaatgggtaagagtgatgtataagtgtttcagggctgtaacaaagctccacgagctggggggcttaaataaaagaagtcatctcac
agttctggaggctaaaaatctgaagtcaagatgttggcagggttggttccttctgacagctgtgagggaagaaatggtttcaggcctctctccttggctt
gtagatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 456 135 NA intergenic
1385 chr6 104879357 104879358 RIP_Alu_chr6_104_01 0 + pAlu6-104772799 TATCATCCTACGCCAATGAAAGATC GAAACATGTTCATTATCCGC SINE Alu Ya5 caaatcaaacaccctgcctatacatatactgtcttctggattttctaactgatgagccagtagctgaaactgacatacagatcttacagtgtagatatct
gtattacgcaatgaaggacagaggtagagagaagtggggaaaacaaaaaaagcatcagagagacctgtattcctgacatcacaaacctcaagtcctcagg
tggaggttataaaggcaggacccaaatgcctgtcagctgcaacacatacagcaacccaactgtgcaggctggaaaacagcagtgtcacagtagacactgc
agtgagaggcagcccagtagagcacactgcaccagaccagcggctctcagcaggtctctgagtagcatggaatatcatcctacgccaatGAAAGATCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GAAAGAAAGATCATGGgacattggctttgtggttgtagtgaggggatgccatactaggaggcagataacagtttatgcgacaaggaaagcagtgagaacc
gcatgattttcagtggatgccagcacggaggactggccatgctcctggcccaaatatatgaatgtccatgtcagagacaccacatgcacaaataccagaa
ccagatatcctccctgccatccagaggctgtttctacatccagaactaattccagggagaaagaagggagacgaaattctgaattaatatgcggataatg
aacatgtttctttttggccatcaggcaaaatagaggtacaaaatagagaatacagttgttataaatgaataaagtttcagcaggtacctttgagtacatg
acctg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR NA 0 637 333 NA intergenic
1388 chr6 105328658 105328957 RIP_Alu_chr6_105_01 0 - Ya5ACA1467 ATGTGGGGAATGTTTGGGTA TCCCCCAACTATTTTCATGC SINE Alu Ya5 ttatacatggtgagaatcttgactgctattcttttgatacaatcttggggccagtaaacttaactattctgcgcctttgtgtcctcatttaaaaatgatg
atacctgcttgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaaaagatcaagaccatcctggtca
acatggtaaaaccccatctctaactgaaaatacaaaaattaactgggcatggtggcatgtgcttgtagtcccagctacttggtaggctgagggaggagaa
tctcttgaacccaggaggtggaggttgtagtgagctgaggttgtgccactgcactccagcctggtgacagggcgagactccgtctcAAAAAAAAAAGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAGAaaagatgataacctattttttgtaatgtggtaagaactcagttagctgatatgtgaaaatgcttagttggtgcctggcatatagaaa
gtataaatattatatgctattattattacatgaaaatgatattattgtatactaggatttttctgagagcatgaaaatagttgggggaatcacagctata
tatattttttgaacttaaaatttatcataaacttttaattctatttaaaattttcaagttaaaaactgttactccttttctgaagattttctccctatat
gtttccttttttttttttaaaaaagtctccttatctattctttttaagcatctagatttctcagaaagtaattagagaaggaattaaacacagagctag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 1011 700 NA intron
1391 chr6 105674546 105674865 RIP_Alu_chr6_105_02 0 + Ya5ACA1458|pAlu6-105567882 ACAGGCCCATAAAAACATGG TTGCTTGACTGTTGTGACAGG SINE Alu Ya5 gtcctcatgagggcccagccatgcacctaagtgctaaagacagttaggactgatgttccttcgttgtgcaaagatgtcacccaggactctggaaaagagt
gggtgaaggagttaaaagaggagatggaaatcatctatgagatgaagaaattatatttagatgatacataaggctgttaacttttcttcagccatctgaa
ttacctcaagtttccactgaggcaatgaaacttttacaatgacactgtaatttccttagcaaattcactttttattgatggttaaaaaattactttcgac
ctgtttaagttattattgaatataaaataatagtattcaaataataagccgtacttagttcatatgagtaacttacaggcccatAAAAACATGGATTTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGAAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACATGGATTTGGttggaagccagtagttagagtgctgactgaggtcattttacttgattcctaatgtttcatttcta
ccaaatagacagtttatttaatgatttcctgtcacaacagtcaagcaaagtgtattttttatgagaatatcttataaagcaatataagaattttaaaagt
ttccataaaataaatttacttcttattaggcatttcagtagtgctatgcttgagtccttgtgaagaattttactgaagaaataaaagcaaatacggcaac
agaatacataaaaggacatctttcaggtcgagaattagactaagcatttgcaaacaggtttgccgtgattaccacaaggtactggatcagttcctccctt
tagattccaaaccaattct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR|Candidate screening NA 60 474 139 NA intron
1401 chr6 107035538 107035841 RIP_Alu_chr6_107_01 0 - pAlu6-106928873|31794 NA NA SINE Alu Ya5 ctttgtttgacccccaacaggaagcctgccgatcaatgagagagaactggttgatgcagtccatctaggacacagtaggatgcagaagggtggagaggga
cggaagaacaaacagagggtctccaggagagaaggtaaagatatcgagagggcttctccctctctttcagagagaggagatgcagatgagattagggaaa
ggaagggctgagacctcagtcaccatgaagaccagcatggggtggcaagtgtaccttatctacctctcatgatttaattctatggctggtaaggtttggt
agttgttctctttataaatttagtttgtcagaatgacagtaagctaaactttcacctccattggagcagccaattttttcttttcttAAGACAGAGTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAA
AAAAAGACAGAGTCTCactctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctcccaggttcaagcgcttctcatgtc
tcagccttccaagcagctggattacaggcatgcaccacccttcctggctaagttttgtgcttttagtagagacagggctttgtcatgttggccaggctgg
tctcaaactactggcctcaagtgatccacccgcctcagcctcccaacatgctgggattataggcgtgagctaccatgcagaggtgccaaatttttttttt
tctttttgagatggagtcttgctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccgcctcccgggttcaagtgattctcc
tgc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1402 chr6 107090329 107090639 RIP_Alu_chr6_107_02 0 - Yb8AC1372|pAlu6-106983670 GTTTGGCCTGAACCTAACCA TCTTTGTTTCCCAAGCCACT SINE Alu Yb8 actggatacttgaaaaattaaatatgaaggtactgactttgaggttattcacaagagagggggctatgaatgtcaaaggggaaaatgaacctttacaatg
gaaagatggaggaggcaccactttaaccaagcaatcaaacttggtattgctaaagggcaagctagttagcacatgccacctgctgtgatacaacataaat
atatggcactatctatatgaagtatccgtgccaaaactgtttggcctgaacctaaccataccttaagacctaagccctagtagataggaaattcgggcaa
cagaagaacatgctaaatagtagcatgagggaacactcagacaaatctagaatgtggcacactctctaagacagctggcctaaatctttttAAAAGTTAG
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAG
CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGTTAGtggcttgggaaacaaagatggggtattttagagatctttaaaaagagacttaaaagagacagaacaatcaaacgcatttat
gtgaaccttgattggatcctgatttgaaaatgcaaatctataagagacattcctgaagcaattgggaaaatttggtgatggactattgaacagatattat
catggacactttgtgaattttctcaagtgtaataatgatacttatgcaggggaataccattagaaagagagtcaggctgaatcctatgtggaatgaaggg
tcatgatatctccaatgtacattgaagtgctcagaaaaataacacaaatatggtaaaatgataacaattattgggtcaaagtgaatggtacattggtgtt
cactgaacta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 499 179 NA intron
1403 chr6 107231225 107231527 RIP_Alu_chr6_107_03 0 + pAlu6-107124562 NA NA SINE Alu Yb7 ggctggtcttgaactcctggcctcgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccggcctcaacacatttt
caatagaatcatggtaatcattagttttgttagtcaaatatttccagttctctccagtttcagaccctcttatggttaggtgggatcttgtgtttagttc
caaccaatgcatcgtaagtggaagtgtcatgtatctgggccagagtttgctaggttgatatcctctagggttttcttctccctccagcaatgttcaaaat
ggtggccgctctatcagcccaagtccctgagtgacttaagtgtcagagagctctgtcaacctaatggatgggtagcacaagcaaaaaatAAAACTTTTTC
GGCCGGGCGCCGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAACTTTTTCcacttttgttgttttaagctgctgaattttggggtggaatgttagtgaagcataacatggcccatcctgagcatctaccagtcactg
tctttccgacttttcattcactggtctgcttttcaaaccaacccaatagtaccatagatagttttgggttttttggggggtttttttgtttgttttttta
aatgaacatagaaattgacccttctggccttaaagcttgaaacttatatttgttttatctgagtccctttctcagtaaccaccttcaggcctctcaaaaa
aaagtttcaaagaactgaaactctccagatcaccatatccagacaatgagatgccagacccctcaggacccctcattcattgtgattgcttccttgcccc
tc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1411 chr6 108372814 108373108 RIP_Alu_chr6_108_01 0 + pAlu6-108266151|Ya5NBC54|31139 GTTTATGTCAGTAGGAGTTTTCTCGTGTAG TCATTGTATCATCTGCTGTACCTGT SINE Alu Ya5 tgaaacccgtctgtactaaaaatacaaaaattagctgcaggtggtggtgtatgcctgtaatcccaagtactcaggaggctgaggcaggagaatcacttaa
acccgggaagtggcggttgcagtgagccgcgatcacaccactgcattccaacctagatcagagtaaaactcttgtctccaaaataaaaataaaaataaaa
ataaagaagtctagcctggaaatagaaattttggagtctgtgcattagtctaatcctaagcctgtcaccccacctgggttacaaattctaccaaaataag
actatgtttatactgcattcatcattgtatcatctgctgtacctgtacggtcaaacagtgaacgcttaatcagtaactactaaaactaaacAAAAATCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGAACCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAT
CTAaagcaaaaaaagagttggaatctacacgagaaaactcctactgacataaacagaattccaaaatgtaaagaatatctttcttttctttttttttttt
ttgttttgagacagagtctcactctgtcgcccaggctggagtgcaatggtgcgatcttggctcactgcaacctccacctcccgggttcaatcaattctcc
tgcctcagcctcccgagcagctgggactaaaggtgcacaccactacgcccagctaatttttgtatttttagtagagagggggctcactatgttggccagg
atggtctcgatctcttgacctcgtgatccacccccctcggcctcccaaagtgctgggattacaggcgtgagccaccgagcccagccgagaacat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
Genome comparison plus PCR|Candidate sequencing|Candidate screening|Trace comparison NA 0 433 139 NA intron
1441 chr6 112310560 112310861 RIP_Alu_chr6_112_01 0 + Yc1RG303|19328 GCAGCCAGAAGAGATCTCAAATA TCAGTTTTGCGTCTGTATGAA SINE Alu Yc1 gtagtgagttcaaaatgaactcacacagatatagtttataatatataatctatgtttatgtatgtatttatctctatataaatatatgtatatttttaca
tagatgtatcttgtatatatatatgtgaaaatacctgggactggctgtctgaaccaaaaagagcagaaatagttacttgggatgtgtgaatttggcaagt
acaggtatagaaactcaaatctctgttacatattggaggtttaatttttctagcttgcaaatcaaggtcaaccacccaatggcagccagaagagatctca
aatagacataaattattcatgagcttacagaagttaaactcattttaccccaagagaatcaaatttactaagaatggtctgttAAAAAATCAGAAAATAT
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG
CAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCAGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAC
AAAAAAATCAGAAAATATttcatacagacgcaaaactgaaatttatttcatcctgcatttcatttatcatttatttcaatgaattggctttggataagcc
ataggcattccccaaattctttctgtctgtctttcaataaaaagaggaacattcaatttctattcaaaactgaaattagacaaagacactcttttcacca
ctaatacttaacattgttctgaaaattctagtaaatgtagtaagacaaaaagaagaaaccataaatataaatgacaaagtggtgacaaaattctatcaat
tcctgttaatgtaattatctacctggaaagaccacgagaatcaattgaaacactattaaaactaataaatgaattcactatggagccagttgccaaagat
c UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 63 458 140 NA intergenic
1476 chr6 116857522 116857825 RIP_Alu_chr6_116_01 0 + 30968 GTCTTGAACAAGTCAGCGTTTCTG GAAAAGGCAGCACAGTGGGGCTGAG SINE Alu Yi6 ttgcccccattagtcaggagccaagtcttagcctgggacctatatttaggcccagagctggttagatctgggcctctggaagccccacacctgccacata
gtaggccatggtagcgtggtcaacatgtttgtggaagtaaagcaatgtggctacacccacaccaggaggcattgggcttaattttattctcaagggttgc
gtgttttaaaggaaaaccttaaatctaaagacctaggttgagattaaagttgtgttcatttttagtcatgtgccagaggtcttgaacaagtcagcgtttc
tgttttggggcaatgatacataattgggttgttaaaaggattaactaagattctgttcagtgctgtgtaagttataaatgttatAGAAATATGAGGAGTT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGTCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAGAAATATGAGGAGTTgttattgtcaactaagtgcaacagttctagaaagctagcatttctgagttaaaaggttttataacttgttatagacttaat
tttcagtggggagattaaaatgtgacagatggaagaattgcttggacaaaatcatgtagctcattttttggcagattcaggattcctagttgatttttca
ttattagtttgcctttccagtggtttctcagccccactgtgctgccttttcagatcctgtggaaaagcacataaaggataagaggttaccttctaatgac
aatacaaattgaagactgtccgtttagcgtttataatatgtgcagcctattacaaattctataaaataatgatgcaagtttcacaaagagataaactttt
aaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intron
1496 chr6 119459218 119459530 RIP_Alu_chr6_119_02 0 + Yb8NBC441|3192|pAlu6-119352555 TAACGTGGTACTGCTTTGAAAGGAG TTTATCCAGAGTGCTATCACTCCC SINE Alu Yb8 gtgggttcctctttcacagtgggttcttttctgactttggactttggcaagattcttctttgtatttgagcctatctcattccacctctcctcaaagcaa
ctcatgtcatttgaaaagaattctttaggccatcgattaaaaaaatcacccctttgaggtggtgacattgggtaccaggggaaaaagggtacctactgtg
tattctgataagtggcttgaaaacagcctcctcctcagcttgctgtctttattgcctcatctctcatgacacttgttttcttcactgctcctggcatgtc
ttcaggttattgacttctgggatttgcagattttgtaacgtggtactgctttgaaaggagtactttacactgctttggaagaacAGAAAGAAAGAAAAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAGAAAGAAAAGGttaatgctaaggactgttattagtattggtattggtctaggctgagattcagtatgggagtgatagcactct
ggataaatgcttgaacacacttttgtctctcctacctcctgacaccaattacttccccacccccactcctcccgacttgcttctctcaggtccaggcctg
tccttgacgtcagaaggcatgggctggtctccaggaagcccgtccaagctcagaacttagagacaaagcaaagcattctgcacagtcctgcttgacattt
cctctcttttctcatttgaagattttattgtgttaccctggtgatgagaaatgtagttaagaaagaggaattcccagagtagaaagtatgggggccagaa
gaggcaataaga UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR|Candidate screening|Trace comparison NA 0 472 161 NA intergenic
1497 chr6 119638148 119638468 RIP_Alu_chr6_119_01 0 - Ya5ACA1480 TCTGTAGCAAAGCACATGAC GGTTCAAGCAATTCTCCTG SINE Alu Ya5 ccaagtacacagtatcagtactggggtaattacgtcatctccatattgtagatacactgaagctctgagaagctaattccttagccatataggacatgac
agaaatgggattacactctgctgtctgtagcaaagcacatgaccgtgtccacatattattcccaaaaccagtgttgccagggttggtaccacaacttttc
ttccttttctgtttacttgcttatcagttacatacctaaatctcataaaaatgaaatagcagttgccgggcacagtggctcacgcctgtaatcccagcac
tttgggaggccaaggcgagcgaatcacctgaggtcaagagtttgagacgagcctggccaacatggtgaaaccccgtctctactaaaaatAAAAAAATTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTAGctgggtatggtggtgcatgcctgcaatcccagctactcaggaggctgaggcaggagaattgcttgaacc
cgggaggcagaggttgcagtgagccaggatcatgccactgcactccagcctgggcaacagggtgagactctgtctcaaaaaaaaaaaatgaactagcagc
aaccttctagcccatgaaatcttccacttcttgggcaacaaagaataattaagttatgaaaactaaaccataatcacactcgtaatgcttatgagttaat
aatagatttttgcacaagttgtgtttgaaaacatttattcattgcacttaagtctttctcaaaacacaaagctgtccttgaatttttaatatagttcatt
aaattgaaaaaattctcatt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 677 346 NA intron
1505 chr6 120609961 120609962 RIP_Alu_chr6_120_02 0 - pAlu6-120503383 GAAGCCACTTAGGCCATTATC ATGATATTGGCCATACCATC SINE Alu Yb7 aaacacagcctcatccaagaaaatttatgagcttaatacatataattggagttaggtaggttatccagagatctctacaaatcaagctatcaggaattct
ttagttagccatggcaatcatttggaagaaggctatttacaagtattgcttggtcatagaatatgtacattagacattttttttttttttgctggccact
tccaaattccctcactctccccattgagattgtaatcaaccaaattttgtaagttactatttcctactaacaatttaagatatatggcaggaggtgagta
gtatgagataaggtccaagaggaaacatagccagaataatatgaagccacttaggccattatcaagacaatgacatttactttgAAAGAAATTGAGAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGAAATTGAGAGTCaatacaggggctttactgaagagtgacatgatgtgatttatttatttaaagcagcatattggccaccgtgttaagagtaga
tgtcaggttgatatcacttttcttcctacttcacaaagtgagactagtcaactaattcaataatccagataatgacttgaattgacatgatagcatggta
gatattgagaagtgatagaactttgaatatattttgatggtatggccaatatcattaattaatgattaattaattaatggattagctctatggtgtatga
atgagatctgtattttgagaaaaacagagtcaatgaagcccatgagtattttgtgctaagaagacagaacgatggagtggccatcaattgctgaggaagg
ttg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR NA 0 614 311 NA intergenic
1507 chr6 120936159 120936160 RIP_Alu_chr6_120_01 0 + 14455 NA NA SINE Alu Ya5a2 cactagggagcccagttccataaatgcaacctctgtcattaaccctaatatataagaacagctcacactggacatctttgcaatgaccatgccctcacca
tcaaagtcttcttataactttagtgaaggtagtatccgctgagccttattagagaaaaaagacaactgagagaggagattgaggttattgggtctttcat
aactgattcttctagattactcacctctcttatgccacctttatatcctctccacaacactctgatagggcatttctggcacaactccttcacttaatat
aagccatcagtttttccaagctttgaaaagtctaatagcatattatgactagatcaataatttcaatcatagagttggtggttatAAAAAGGGCTAAATT
AAATTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAG
CCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCTAAATTacagcctcagc
aagtcttccatgcaaaagtcacagggaataagtaggactctgagacttgaaatagaatgaatctggatagattcactgaagaacattgagccctcttgat
gggctagaataactggctgtaggatagcatcattcctattttgagaatcatgcaaaagactcaactgtggcagatgccttgcaagctgataattcccttt
ctcaagagctggcatctgctcctcctggctattaatctaataactaggtaaagttttgcaaaagtgagttggaaatgataggtcttgctaaaggaataaa
ggaattattgtttgaaagagctatatgtcctgatatgtgatagaaagaataagataatgtctgagaatggctct Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1510 chr6 121361005 121361315 RIP_Alu_chr6_121_01 0 - pAlu6-121254345|Yc1RG258 CCTGCAAAGTTAACCGTCTATGA GCTCTGAACAGTAACTGGCACAT SINE Alu Yc1 gaatttagcattaggataggtttttatatattaggcagctggcttttgccatccagagtgtttcatagaaatcatcccagcccaaattaatgaagaaagg
acagattgtttagtaaatagtttgcaaaaactggatcactccgtggagcaaaatgaaactaaatttctgcctaacactacaaagttggatttcaggtaga
ataatcctgcaaagttaaccgtctatgatataggagactatttttgtcacctaaggttgaggaacgacttcataaagaaaatctgaaaagcacaaatcat
gagctgaaagaatggatttatttgattgtgttaaaattaaagatttcttttaaattacgggtgtcatgaacaaaataaacagatatAAGAATGGGAAAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAACATTAGCCGGGCGTGGTAGCGGGCGCCTGTGTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAAGAATGGGAAAGGtatttataatgtctatatctgacaggagatatatgtctacaacacacagggaactttacaaataaataagaaaaat
ataggaaaaaacaataaaatataggaaaagtaggagcagactatttgcagaaaaattactcagttatcaggcatgtaaggggatgttcaatatcaagtct
agtagggataatggagaaatggaatatagtggacatacaatatgggatatgatgtggcagttagaagtcatagcccagctttgtgtagtaacatggagag
atcttatgaaataaggatatatgaaacatatagtaatgttaacaataatagaaaacacttactagtatttactatgtgccagttactgttcagagctcat
aacaaccgtg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening|Genome comparison NA 60 891 567 NA intergenic
1511 chr6 121496786 121496787 RIP_Alu_chr6_121_02 0 + Ya5-MLS44 AGCCTCTGTCAGAAGCAATAACTAG CGAATTAAGTCTTTACCTAATTCTTGTC SINE Alu Ya5 cctaagaaaactgctacgtattgctgcatgatcctcatgattatcatatataaaatcagatttatgtaagtatttccctatttgacatttacgtcagaaa
aaccctttttataccaaagctacatacatactctctcatacaaacacatgaatacacagatacatacaccaaacacatgtggactcacataaatacacac
ataaagcaaaaagctcttttgttgaaagcatatgtaattctgctattcagtactaatctattttatttgaataccaagactacaatgatacgtttcacaa
atagcctctgtcagaagcaataactagagaaaaattatcaagcattaaatcaaaagagaaaatgattctttttaataaaaacacttAAAACTATAAACTC
GGCCGGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACAA
AAAAAAAAAAAAAAAAAAAAAAAACTATAAACTCataaaatttcaacacagctaataattttactgaaaattatgttattgctaacaaaaaagttttaat
gttaaatgtatcttgacaagaattaggtaaagacttaattcgacattattgaaattgaatttttattgttttcatttaaaatatccacattacatattgc
caagaataaaatatctacagtctaataagaaacactagtgacacatgattgcaaagataatgcagttttttcatctttgtttcctcctgttttcttcttc
tactcatgtgtaactccatcttttacctccttcaaacaaaggatgttactacctccttcagaggacatccatatagccctttcataggctatctgttatt
tataaatctgttttcttttt Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
1529 chr6 123805122 123805420 RIP_Alu_chr6_123_01 0 + 4970|Yi6AH125 GCTGAATTCTGTCCATGACT TCTACTCTGTTCCAGGCATT SINE Alu Yi6 ttttattctaacactgtggccagaactgatgtattcctggttccagttaagtaaataagaacttgtttctttaataacaatgcattccaacatacctcat
cactgtcaccttgttttcttagagtggcagagattggcctggaacccagctcacaatatgaccatggaaaattttacataagctgaagataagttcaatt
acacgagtgattattagagttgtcccattgttatctacagaggggtgtggagcacgagagaaagcacaggtgctggcactgatgaccttgggctgaattc
tgtccatgactcttcctagttgtgtgaccttgggcaatgtgctatggcacaccgaatttcattttcctcatttgaaaagtggagctaataaaaTCTACCT
CACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGGGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTAC
TAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCTGGAGGCG
GAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAGTC
TACCTtgcttacttgtgagaaatggagataactgggctaaaatgcctggaacagagtagatgtagaaaaataatgataataatgacaagctattactata
ttttacaaataataaaaatctgaccacatataatctttttaggtaattttttaggtgtgacatttactgatctctttgagtaaatgcaactttattctta
tttttctatatccagggagggtatgtctagaatattttgtattaagaaactaaagggaaaaaaatacccataagcaagacagaaacatgttatgaagggt
actgtactgcaatgaagtggattcaagtctcaattttgctataattagtagtcattaccttatgcaactatagatgaatgttgtatcttctgtcttca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Trace comparison|Candidate screening NA 55 469 164 NA intron
1535 chr6 124540621 124540928 RIP_Alu_chr6_124_01 0 - Ya55572|pAlu6-124433954 TAAAAGAGGCGCAACGGAGT TACATGGCACCTTTTTGCTG SINE Alu Ya5 tctactaaaaatacaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactcgggaagctgaggcaggagaatggcgtgaacccaggagg
cggagcttgcagtgagcctagatcatgccactgcgctccagcctgggcaacagagcgagactctgtctcaaaaaaaaaaaaaaaagttaatgtacgtcta
aatccatttggctgctgtaacaaaatactagaaactggggggtctgataaacaacagaaatgtatttctcacagttctggaggctggaaagtgtaagata
aaagtaccagaaaatttggagtctattgaagccctcttcttcctgtttcttacatggcacctttttgctgcatcttcacatggtAAAATGGATGAACAGA
TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAATGGATGAACAGAaactccgttgcgcctcttttataaaggctttaatcccattttgagagcttcctcctttatgacctaatcacttccca
aatggccccagctccttggaggttaggatttcaacatatagattttggggaaaaaaaaactttcaaccataacaatgtacgtaaaacacaatcatatctg
ctatgcagagatttctaaatagggattaatttttttgtatttcctattttcccaggataagtgtaataatgttatggactggtaatagactgatgccata
actatgttttaatgaggggttctgaaagtcaatacctgggccacaaaaaaggattccagtggtagtcatttacagaaatgtcacaggattataccagaag
tttaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 394 71 NA intron
1569 chr6 129031524 129031843 RIP_Alu_chr6_129_02 0 + Yb8NBC278|14379 CATTTCACAGTAGGGAAAGTTGG TGTGGTCTGGAGGAAAGTAGG SINE Alu Yb8 acactgggatattatgactattttggtagcttaaagaaaaataaattcataatactagatattaattatattcgatgatatacataatttataatactag
gatagaaaaaatctttattaattttcaagtagttacatcattctctcctcacttcttagcatgaaggccatttatgtactggcaggtaaatgtcaggttg
agaaggctctaagtcatttcacagtagggaaagttggtttttcaacttggaagcaaattttattttattatttttagaaaattatatatatatataactt
aaaatggaaaattgcacaaatcataagtggacagctccgtacattctcaccaagagaacatatcaatgtaatgaacacccaaattAAGAAACACTACATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCATGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAACACTACATGattagctccccaatatcctccattcggctactgtctagccaattccctaccaagggcaactgctac
actgacttctaacactgtaaagtagtcactggcagagattttgaaaggcagtatgtcctgctgaaatgtgagggaaattccactgatgattttaaaccta
aaacgatatgaatatctttagcaacaaaacctactttcctccagaccacataagaacccgcccatgcctatgtcctatttcctctggagcatttttaggt
taagttttagatcttgtagtctggtgatatagtacattttgacataacatggagtaaggatgccatgaggatgcccagctcatgtagggggtgcttggct
ggtctgtgatagtcactgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 55 736 402 NA intergenic
1575 chr6 129778782 129779077 RIP_Alu_chr6_129_01 0 - Ya5-MLS19|2128|Ya5ACA1492 GGGAGATTGGTGGGGAATAA GGTGGTGTGGCTAGGAAAGA SINE Alu Ya5 accccaaggatcctgtgacatcagaacttcccttatacaagcccccacatgctggggctgtgcagtctgtgtagggcccaaagggtctggctctgggcga
tggaactggccagggaatggctcaccatgctgtgtgccctgacatatctggcccagtggttacataactcccaccaagactgcatgaggctcccaagcat
atctttcccatggagaaagcaaaatatacagtaagaaaacaaacagctcttcagaaatacagattaattaatttaaaatttgaattctgagaatagtacc
aagagactaagtaaaatggagtgactgtccgggggagattggtggggaataaaactatgacggagtaaaaagaagttgatcAAAGAAAGTGTATAATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC
GTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG
GAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCNTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAAGA
AAGTGTATAATTTCagcaaagaaagcttccctttggacagggttggcactctttcctagccacaccaccatgggccttttattttcttttttgtgagata
aggtcttgctctgtcacgcaggctggagtgcagtggcatgatcttggctcactgcagccttgacttcccaggctcaggggatcctcccacctcagcctcc
tgagtagcctggattacaggcatgtgtcaccatgcctggctaatttttgtatttttagtagagatggggtttcgccatgttgtccaggctggtctcaaac
tcctgggctcaagcaatcttcccacctcagcctcccaaagtgctgggattaccggcatgagtcactgcacccagccaccatggttatttagatag UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Selective PCR with subtractive hybridization|Trace comparison|Candidate screening NA 55 437 123 NA intron
1586 chr6 131217169 131217170 RIP_Alu_chr6_131_01 0 + pAlu6-131110606 CTCAAACTTCGTTTCTCAAG TTGGTGACACTCTAAGCGTTACCAG SINE Alu Yb7 cttcccagatctgacagtcaccagcaaaggaaattttttaagagtgagctgcagccagtggggggtggagatgccaaaatgactttgagacactgaggtc
attcctagtcatccttcagattttaaactcaaacttcgtttctcaagtaaactggtttctaaaggaaattggttaaatttatgatagttcaagtctccta
ttttgttctctcatagcattttatttccttcagagggctgatcacatttacattttgttcatttgttaatattcacacctaccttcctggagcacatcct
ctctgccaaggagggggaccatgtttgctttgtctatcacggaatcctcaatacccagccctaccctagcacatttaggcactcattAAATACTTTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAATACTTTTTGAatgcatgaatgaatctttccaaatttatctagtttgttcaccttatatgtaagtttatactttaacttcctaaatctgtttaa
caaggcttctcataaaagttagcctctgagatgggcaaacttcaaaagttgtgtgtgtgtctgtgtgtgtccattgtaaaaatgaacataaggtgctagg
aataagtgatacaatgaattcatttaaaaacttattaaaatgccacaagtgaaggtggagctactggtaacgcttagagtgtcaccaattttttgctagt
attcctgattaagaagcaactgattcataaaatttagagaaaaaaacatccagtgctattaccttatgtttgtataacactcacttttctcattcattat
ctta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR NA 0 857 553 NA intron
1597 chr6 132739335 132739644 RIP_Alu_chr6_132_01 0 - 16327 NA NA SINE Alu Ya5 tcacaattgcaacccagttctcaaaataagaattttgacaaacctcaactttggcagaagaaaagtaacattttatgtgaaaaactgacatagctaattt
ctggagacagaaaaaaataaacaaaaataagcgtacccatcctatcccagcagtggccactacactgtagaagagtgaaaaaggatccagactctggggc
cagagtgccaaggtttgaatcctgcctttcggtttactagctgtaaatcctgggcaagtcgcttagcctctttgttctttgatgtcttcatctgtaaaat
ggaaaaatagttttatctgatagatgtgatttgaagattagtttagttaatacatgtaacaggtgtaaacagggcctggtgcatatAAGAAGCTGTAGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAGCTGTAGTTattgttaccattgtcaagaaaggtgagttagactctgcattgccaacaatttggggttttaacatactaaagaaaat
ctagatgtggtaccctggatgggaaacatatgcacacttataattaccatacaaagatgcttggaataaaaatgccaaatgccatctatttgagtatgac
ttttatagacaatgggaggttttatcttatatattacattttctcagtcaaacatagctataaattcttcaaatacaattttactgttagcaaaagtaat
tataattatgtttcagcatgtatattctaaatcaactgtacaacttctcaaaaataaaatatcatcaggtactgaaaaaccagaaaggcagtaattaagg
caaattttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA promoter
1601 chr6 133201813 133201814 RIP_Alu_chr6_133_02 0 - pAlu6-133095237 NA NA SINE Alu Ya4 aaggtgtttgaattcccaccaattaacttttagcaaggtaaacagatgctaaacatatatctttaataggcccaataaatactattatcaattaatagaa
cccaatcaaaacaacagtaagcaaaacattacactgagaacaaaagtgctaatttactgatatgctagtttaggtcagtgctcattttccagtgtattaa
tttttttcatttattcattcaactaatgcttgcattttcaatatgcaaagccctttgctaggtacaacactaagttaagacattacaataatttcttctt
tatgttcgatccatgagcattgtgcatacttgcaaatacaactgcaagattaatgcacacttatttaaaaaactatgccatggtttAAAGACTGTATTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAGACTGTATTGAtttcctgagtaaccagcccgctctcttcatcatagatgaatgctaacttttctcccaaaagttcctctaccattgcagagttggta
tataaattgcttcccaaatgttgcgatatcgcaggtttatttttttttccttctgtttattttgggtttctctggctatctaagtgtcctctcatttatc
ctacacagatgacttcctctttcgagctctttcttgatacaggtgaaccagtggtggcccatttgtcaatcctattttacaaataaatatcatgcaataa
tcacagcacttgctaaataaatgtaacaatgaaagagattttgggtctggagggtgtactgccaaggaaatagaaaaagtgagttattatcatcaccttt
Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1602 chr6 133413194 133413524 RIP_Alu_chr6_133_01 0 - Yb8AC1362|16488 AGGCAAGACAGTGGAAGGTC GCTCCATTGCCAATTTTTCT SINE Alu Yb8 aacagaaggagccattcagttacattgaacaagtttttccagcatttacctctacccttagcactatgttacacttctgtggatattaaggaaaaaaaaa
gatataaaagacagatttgtaatcataagtaggaaaacaaggcttacattcataaactaataagaaaagagaaaacaattcaatcaagtgccaaaatttg
tgtatagacactaagtactgtagaggtcaaattttgcaatcttattatttactaggcaagacagtggaaggtctatgttcaagaaatatgatgggtgaga
aaatggtaatcatagcccatctaattaacatttgttccaggtaagacatctgaatcaatcattggaaattaaatgcttgattgtttAAAGAAAAATTGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAATTGGCaatggagcaaaccttaccacaagattatttgccaaacagaacttagcattctttct
tttaacctctaatggaataggttgtgaagtgtcttttgctttttcccatgatctagctcaactttgagaaagattttgagatcgcaggtcagcttcttgt
tgaacccgactgagtacttaagcaattgttgaggttgagaattagatatcagatggtaaattaagactgggattttattgaaccacagcttccatgtatg
aggctatttctctcaccctttgagcaggggccaggccttgtcaagccatgagactctcttggaataagtgacaacaaaggtgcaagttagcagagaccag
ggacatataactggccatctgtagtccatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 60 499 171 NA intergenic
1613 chr6 134859053 134859355 RIP_Alu_chr6_134_01 0 + pAlu6-134752390|Ya5ACA1497 GCAAGACTTCCTGAAAGGGA TGCAGTTCCAGAAAAGAGCA SINE Alu Ya5 tacagagaaacaactttctcactgccactactgcccactccaaacttcaggttcatgttgccccttcatttctttcggttaccatgttattagttcgtta
attctttaaatcatttcgcaaggatttactgtactgagcacctcttctgtgccaggaatgtgttaggtgcctgccgggaaggatttcaaaattgagggtg
gagacaggaaaatagacaacatctggttggcagcatgttaagaggtcagtgtaagatgggtgtagcctccgagagatccttaaaacatactgggggtact
aaaaacagatacttaaaacaggctggggcaggcaagacttcctgaaagggatgaggcctgcaccaagccagctaggtgaataggtGAAACAGCAGTGGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAAACAGCAGTGGAGgatgacccagcaaagggagctgccgtgcatagccatgacatcacaagacaatgtgctcttttctggaactgcacttttttgtt
tgtttgtttgttttttgagatggagtcttgctctgttgccaggctggagtgcagtggcacgatctcaggtcactgcaaccttctccttcctggttcaagc
aattcccctgcctcagcctcctgagtagccggaaatacaggtgtgcaccaccatgcccagctgttttttttttattttattaaagacagggtttcaccat
attggccaggatggtctcaatctcctaacctggtgatcggctggcctcggcctcccaaagtgctgggattacatgcgtgagctactgcgcccagcctgac
gt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 55 459 142 NA intron
1621 chr6 135834561 135834878 RIP_Alu_chr6_135_01 0 + Yb8NBC292 TCCTTTGTGGAATTCAGCAGT AGGGAAGGCATTGACTGTGT SINE Alu Yb8 aatgaatgaagtttccagagtatcttcagtagcatctctacctttcatagcattacactgacattttcattactttttaaatagcctgattttgtggttt
tgatttcctttttccctctaacagctttatgggataaattcccaagtagtttgtaaattataaacttttgttaacttctagttgtactgtactatttttt
ttaaaaaagtctcctttgtggaattcagcagtttcatggatcaaattatgtttgaattttgaaacgtcccaaatacatttgttcattcatgttcctatta
tacctttgccaattttttacctctttaaatgattcaggtttttttttgctttggtttatctgctattaaaatcagctttattAAGATATAGCTTACATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGATATAGCTTACATCAataaaatttgccaattttaattgtataattaaatgaattttggcaaatgtatgcagtcatgtgac
caccaccataatcatgacattgaacatttccatcattctacatgtcctgttacacagtcaatgccttccctccatgctctgaccctactcaaccactgat
ctggtatcacaatagctttgccttgtctagactttcacataaatgaaattataccatctatagccttttgtgtctggtttccttcattcagcacaaagct
tttaggattcatccatgttgctttattcatagcagtttattccttttttgtggagtagtattccattgtacagttatatgccacattttgtttctccata
caccaattaatagatgt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 660 325 NA intron
1645 chr6 138989441 138989748 RIP_Alu_chr6_138_01 0 + Ya5ACA1504 TTCGAGCCCATGGTAAGTTC TGCAGCAGAATTTTAGACTTTCA SINE Alu Ya5 aacaaccatccagtcctgcctgatcagtccacttgcttgaattctaaaacctcacttagcttttggaaacaaactctttaggtagaatgttaatacagga
gtctcttccctcgcaaagcaaaatcttgaaagagccacagacattttctcactgttaacagtggtagataggttgattatgtagtccataaattttacta
aatcatcagacacacttgacttttctctgtgacggcatagctttaagtaaatattaagaaggcatttgcatccattaaaacacagaatttaaaaagtaaa
aacacctcttcgagcccatggtaagttctacattttccagattctcagcattagcaaatattgtttatataatcaagaaactttcttAAAAAAAATTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATTGTAactaccactataagcaatcaagactaaacaaaaacattactgtatatcatatacaccttcttattgaaagtctaaaattc
tgctgcacataaaacacctaaaacaatttagaacatttgccatttctttctattctaagggaaataataggattaatgagatgttgatgagaaattgtct
tctctatgcaacactgctctctgcaaaaataccaaactatgtcaaacctgttcccaaaaggaagaggattaaattctacacctagaaaattaaattctca
agctacctaccacacagtctgtcaatttatataggttactataatcaagaaaccactgcttttggtctatgttttaaggatgaataattaatacacaaaa
agttttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 499 179 NA intergenic
1649 chr6 139575161 139575162 RIP_Alu_chr6_139_01 0 - pAlu6-52728751 NA NA SINE Alu Ya5 atacagcacactgatgggtcttgactctatccagtttgccagtctgtgtcttttaattggagcatttagcccatttacatttaaggttaatattattatg
tgtgaatttgatcctgtcattatgttagctggttattttgctcattagttgatgcattttcttcctagcctcgatgatctttataatttggcatgatttt
gcagtggctggtaccggttgttcctttccatgtttagtgcttccttcaggagctcttgtagggcaggcctggtggtgacaaaatctctcagcatatgttt
ttctgtgaaggattttatttctccttcacttatgaagcttagtgtggctggatatgaaattctgggttgaaagttcttttctttaagAATGTTGAATATT
AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCTTGGGGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCCGGCTAAAACGG
TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGAGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCAGTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATG
TTGAATATTggcccccactctcttctggcttgtagagtttctgcagagagatcagctgttagtctgatgggcttccctttgtggataacccaacctttct
ctctggctgcccttaatattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcaaggagtatctttgtggcgt
tctctgtatttcctgaatctgaatgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattc
tccccgtcactttcaggcacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcatttctttttattctt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1660 chr6 140994596 140994871 RIP_Alu_chr6_140_01 0 + Yb8NBC568 AAACCCAACAAATGTGCTTC GGCAACCTACACAAAGCATGT SINE Alu Yb8 caggagaattaaagaattcttgtaaacagtaatatcataaaattctgtgtctgcagccttatataattttttcttcctagtattctagattcataaaaaa
acacaaaaagaacaagtgatcctgagttatagtttgtaatcaagttatttcttgtaatggagacactgaagactcagaatttattaaaatgcagtaattt
tattttgataaaacccaacaaatgtgcttctaatagtggtttttcctattgaaggactatacaactcagtgttgtataaatatgatatttaatatagtac
atataagattctatatagtaaatatagaataaaaaatacaaagattgctatagcatgtgatctgtggattactcaaggatagtgattAAGAATAATTAGC
TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC
CGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTG
CGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAATTAGCacacatgctttg
tgtaggttgcctataaaaataaaaattggaagatgtaaattttttcaacaatagaattatactgggaaaaatttgtatgttcttcaataacttagaagaa
ttgttgagctctcctgtagcttttcggcactttgtaaaaatgaaatatcaagaatcaatatttatatttgttaaaaatattaaacaagtcagctttgatt
gaacaacatctcttaaatgtccctgttgccagagagttgaatgagatgaacttataggtgcatgttgtgtattttaccagctctggttttaccaaaaact
tggagacatgaaaaaagtaaaaggaccactacccagcattcagtaaaataaactagaatgtccacaatgtctttt UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 501 213 NA intergenic
1663 chr6 141367414 141367726 RIP_Alu_chr6_141_01 0 - Yb8NBC576 AGTCTTAATGGGCGCTGAGA AGTGCCTCACCCAGTAGCAC SINE Alu Yb8 tttgttcaacagaactgaaattgctttacttaacttttatgcaaatgtaactatatgcaataaaagaaatttaaactcccgaacatattaaatcgctcta
gaattttggatttttataactcttaatgaaatccataatgatatacaaaagtatatcccaagggattttaaaatttctaaatgttattgtcacttagaaa
atcctactttttaaaaagaccatgccttaattttctgataggatactctttttgagaaatgtctacacaataatagcatgtacactaaggtatgcaaaag
taaacaaataagggattattatatatgtttcaataggaacaacaaatatatttttcaaaggccaaaatttctatttataggcaattAAAAAGTGGATTTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGTGGATTTTaagtttgcccactagttagttcccctggtcttcaagagtaagactacctcaatagagagctccactgggaagcc
acatgctctcatcactaaaattgtccaaataatgaactgatatattaatataatatgctgaaacaacaaacattcgagaaaacaagagaaatactgctga
tttgagacaacaaaattagaacttggatcttttcattaaataaaacattttttagatgatgttttcaacaagatttgtgtaagagagggcagtaagattg
ggtacaaaatcataggctaaatatctcttttgattccttgagagagagaagacaggtgtgatgtggatttcatggattttagatcattttctttcttcga
cattgactccaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening NA 55 475 149 NA intergenic
1758 chr6 153841788 153841955 RIP_Alu_chr6_153_01 0 + pAlu6-153704791 NA NA SINE Alu Sx aactttggaaggtgtcatccccagaccaacaccatagctttttagttttttaattttttattttttaaaaaagagaccagtcttacaggcagagaggttt
tggttgatctggtaaatggatggatcccactgccatatgttcactgttgcaggttttttttttttttttttttttataccataaagtgggtcctttaggt
ttaggcactattctatgggatttcatattcataaatcagatcctctatgagcccttgaatagtgcactgtctcgaaagttgcaggcttggaaattattcc
atacatgaagtaggtatcaatttctataagaaggaattattgctgtatgtatcaaaaacatttctaccatcaagacgatgaatgttaaaaaTAACAATGA
GGCTGGGCACCATGGCTCATGCCTGTAATCCCAGCATGTTGGGAGGCCAACGCAGGCAGATCACTTGAAGTCAGGAGTTTGAGACCATCCTGGCTAACAT
GGTGAAACCCCATCTCTACTAAAAATCCAAAAAATTAGCTGGGCATGGTGGCGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGC
TTGAACCTGGGAGGCGGAGATTGCAGTGAGCTGAGGTCACGCTGTTGCACTCCAACCTGGGCGACAGGGCAAGACTTCATCTCAAAAAAATAAAATAAAG
TAACAATGAGgatctattatgtattgtaaacatttctttcttttgctcatgaacacttctttaaaatccactgacagagcattaacatgaatactaaaat
tcatgtttggattattgaaaccaacaaaacatctcactggtaaattaactgatgtacaaaatcattctgactgtgtcaaccatggaactttaaaacgtct
taacacataaaaagatatgttacttttatactttatactttattatgaatatttaaaagccatatacagaaagaaacacatgcatatgtaatcatacata
gaaagacttgacagcacacatgtccactgcgggtttcttatgaaaaatgccaccttggctaaatgtcaatgcatttatatatcaagtgattttgtaagca
a UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1764 chr6 154539043 154539349 RIP_Alu_chr6_154_01 0 - 9719|pAlu6-154401955 CCTCTTGGACAGTGAAATCACAACC ACTTACGCTCTTTCGCTTCAAATGC SINE Alu Ya5 gacatttgaattttgcaaatattgggtagtgttgggacacttctgcccttcttgaaatgggggaatataattgttgttctccttcccagaatttctttgt
ctttgtcctcttggacagtgaaatcacaaccattaggtcacacaaatgtagtctcctctcccttctctctggtcttgttaattaaagcagttttgctgtg
cttaaattaatgaagctcactcatgttgttcagtgaatatggctatgttcaattttacccagactcttaggaaaagagttgtcttctttatttcctcttt
tttttttctcttctcctatatcttctgtggtttataccacttatctcatttccgtttggtattttgtaaccctgtgaatttatcaAAAAAATGTCTAGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGATCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGTACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATGTCTAGCCttagtgggcaatgcaaacttaaataaaacatttatgcatttgaagcgaaagagcgtaagtttaagagactttaaagcaa
atgggatgtgatagcctgttttcaacttttaggtcctttcaaaaatcaaattgcaaaggaagttgtaggtaatattggaaaccacctttctctggaaggt
tttttttgctaaacattcctattacagtgcatgtgacaatatgaagatgaattttccccactgtctcaaagggactctgtgctctctctctaaaacctaa
aacaaatacttatttttctttatgagtatacttatgctaagaatgtaatacttttagttggaacttaagcaagaaaactctgaatctaaacctgtgtaat
ggaaga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR|Trace comparison NA 0 675 362 NA intergenic
1789 chr6 157928265 157928558 RIP_Alu_chr6_157_01 0 - Ya5ACA1579 GAACTGTTTTCTGGGCGCTA TGGGATGTCAGTGTCTGTTTG SINE Alu Ya5 aaaagaaattagctaatttagcaccggatactaaaatgatgagaagcctttacagaactctccctccaatcatatacatcagcaagagctgtttgatttt
ggatatgatgataaatacctatgcacaaactgccaaagcattgtacattagaggtacagaaattcattccaggtaataattagaaatgtagcactgccaa
aagattatatggaatttttttcagttcaaatagcaatctctttgaatctttagtaaaaattgtttttgtgcattgatgtttatacatgaaaaatggaact
gttttctgggcgctatattatctgagaccacacaatcagagtgcatccttcctctgctcagaactaaatatttgatattggtcattAAAAAGATAGATGG
AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAGA
TAGATGGagggatagatagacagacagacaggcagacagatagatagatataaaatcattttagcatcaaacagacactgacatcccagaatcaatactg
tcattaattctatattcatgtttagagactggcttacaggttagaatttgacataatgctgattccttgaacaaaacccctaagactaaattaatttctt
aaacatttggataagaaacatggatttcattattgggtaattaggtcactctgttttccagaggacattctttgggagaagattaacttaaaaactaaac
aaaacaaaagaacaatattaacaagatatagcagagacattaaaaccaagtgccctttggaacaagaagtagagaatcttttcctgtatcaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 493 186 NA intron
1802 chr6 159622536 159622836 RIP_Alu_chr6_159_01 0 + Yb8AC880|pAlu6-159485453 ACAAGAAGGAGGAAGCAGGTAAG CATGAATACACCTGGTGCAAAT SINE Alu Yb8 gttttcttttctacttcctcacatttatgctggatattggcggcttttccttcattatgtgctatgaagacccatggtagactgcaatattagacaattt
tgtcatggaaaaatctgtgaaatggatgacatttgcccctccggcactctcactgcaatataggttcctctcccctatagaatctcttccctcagtcagt
ctgctctgaagacagggtgattacagtacatttaatatactgtttgcctatcccaggagttttttttttattttaagccttattttagaattataaatgt
gtccactattaatggaattttaaacaagaaggaggaagcaggtaaggacatgctatgggaagagggaaatttttgtactgccttAAAAATTACAAATTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AATTACAAATTGGttgctcgtcacacattccccatcactttgagtatagattattcagcaatttgcaccaggtgtattcatgtttcttgtctattaagga
cagctataatgcatttgtaatacactgacaattagttttattaagaaaatcctatataagattttgcatttataaaataaatgagttacttcaaagtact
catttcagaatttcttcaaataataagatgtggcataacctggttcaatagagattcaattcacttatattttctaggactatatttgttacttaaagca
aaatataagttttaaaaagaatgctatcgttgagaaaacacgtttccagtgttctaaggaattagaagttagccattatgactactgatttgaaatgcct
UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 459 146 NA intron
1802 chr6 159637187 159637495 RIP_Alu_chr6_159_02 0 - pAlu6-159500102 NA NA SINE Alu Ya1 aagcccctcacatgtgaactcccctgttcatcagtcttcattcctccacctcctccatcttgcttctggaatattctagaagagggtaatttcctacctc
ttctacatcccaacttggcaaactctaccaatgagagttccttgtgcttctccacttcctactgagttcccacccactctcactgactcaggagataaat
cagatttcttaatttgcataggaaatttggaaacatatgccaatcattgcaaatttccctttacagattgggctgtactaaccaatagatctattttgac
tacagaattatactttaaatgtaatataaaatttcagatgtgatttttggaaaagccaggaaaccctggttagaagaactattaaAATTACCATAATGAC
GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACCTGGT
GAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAAATTAGCCGGGCGTCGTGGTGGGCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCAAGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAATTACCATAATGACtaaactgatattatgagcataagtaacatatgagtgatttaagaaaggtgagtgatttaagcataaaaggcatcttc
acctccattatcagggtagtttaagcagaagtcttttgggaaagatgtgatggaattgattatactatttctctacttgggagatacagatgtagctgta
aaaaggagaacatctcactgtagctgataaaatcttgaggcaaaaggttttatagctaaaaaaaaaattgtaggaattcctttcctccctttgacctgaa
gcccacagcaattaaatagaactctctaaacttaatgcaccctcaaaagggggcaaggtggggaaaacaggaagaagtgactagtggatgatttcccaga
tgtcttct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1812 chr6 160952343 160952616 RIP_Alu_chr6_160_01 0 - pAlu6-160815263 NA NA SINE Alu Yb3a1 atatggaatagaaaaagggcctgtatatccaagacaacctaagcaaaaagaacaaagctggaggcatcatgctatctgacttcaaaatatactacaaggc
tacagtaacaaaaacagcatggtatggtactggtaccaaaacagatatatagaccaatagaacagaacagaggcctcagaaataacaccacacatctaca
actattggatctttgacaaactggacaaaaataagcaatggggaaaggattccctatttaataaatggtgttgggaaaactggctagccatatgcagaaa
actgaaactggatcccttccttacaccttatacacaaattaactcaagatagattaaagaattaaatgtaagacctaaaaccataaaAACCCTAGAAGAC
ACTTTGGGAGGCCGAGGTGGATGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACAGTGAAAGCCCATCTCTACTAAAAATACAAAAAATTA
GCTGGGTGTGGTCGTGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAGCTGAGGAGGTTGAGCTTGCAGCAAGCCAAGAT
TGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCAAAAAAACAAAAACAAAAACAAAAAATCAAACCCTAGAAGAaacataggcaatacc
attcaggacataggcatgggagaagacttcatgactaaaacagcaaaaccaatggcaacaaaagccaaaatttacaaatcagatctaattaaaataaaga
gcttctgcacagcaaaaaactctcatcagagtgaaaaagcaacctatggagaaaaattctgtggtctagccatctgacaaagggctaatgtttagaatgt
acaagcaacttaaacaaatgtacaagaaaaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttctgacaggaagacctttatgtg
gctgacaaacatgaaaaaagctcatcatcactgttaattagagaaatgcaaatcgaaaccacaatgagatac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1829 chr6 163160790 163160791 RIP_Alu_chr6_163_04 0 + pAlu6-163023807 GGACAGACTAAACTTGTAATCTGC AGCTAAGGTAAAGATCGCTGCTCAC SINE Alu Yb7 ttgtatagcactctgtgcttaaccctgttgattaacttcctgtgtcttacaattgcccatttttctgtcttaatccaactctatattgcaaactgagggc
tcccttttcccaccatggtaaatgtggaggcagcttcctggaagaggccttgaggtcacatcacaaacagtaaaacagcatatgggggagaatctcctcg
gaagaggacagactaaacttgtaatctgcacaccttttatttaaaccctctcagtatattaaagtcctccaagaaagacagttgtcatagggagtggtct
agacatagccaacttttcctccatgaaaagaataagcctttattttgttcagccactgggagtttcgaggtggttttttactgctctAAAACCTAACTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAACCTAACTTAtcctaataccggggacaaacgttatttactctggtgacaaacattatttctattttacaagtgaggataaactgttagggag
gttaaattacttgttcaaagctcatacgtgttgtagcaaggactaagtagtcttaggcatagggctcagctttttaaacctaccttgatggtttttgtgc
ctcgtctatagggatagtattttctactccaaagtatatgccatgatgatccagaggatattgatcatgcactggtaagaagaatgtctctgtataaaca
aatgttggtataatataaacattgataaattgtgagcagcgatctttaccttagctctgaatgtctaaatttcacttggaatttttcagtagatttatat
gaact Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR NA 0 853 547 NA intron
1830 chr6 163231225 163231238 RIP_Alu_chr6_163_02 0 - pAlu6-114755536 NA NA SINE Alu Y atggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctatcaatggtttcttcacagaattggaaaaaactaaagttcatatgga
accaaaaaagagcccgcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatactacaaggctacagt
aaccaaaacagcatggtactggtaccaaaacagagatgtagatcaatggaatggaacagagccctcggaaataacgccacatatctacaactgtctgatc
tttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtAGAAAGCTGAAACTGG
GGCTGGGCATGGTGGCTCAACCCTGTAATTCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCATCTCTACTAAAAATACAAAAAAAATTAGCCGGGCACGGTGGCAGACACCTGTAGTCCCAGCTATTCGGGAGACTGAGGCAGGAGAATGGT
GTGAACCCGGTAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCTTCTCAAAAAAAAAAAAAAAAA
AAAAAAAGAAAGCTGAAACTGGatcccttccttataccttatacaaaaattaattcaacatggattaaagacttaaatgttagacctaaaaccataaaaa
ccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacagcaaaagcaatggcaacaaaagccaaaattga
caaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacagacaacctacagaatgggagaaaatttgtgcaacc
tactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaccccatcaaaaagtgggtgactcaaaagaa
gacatt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1830 chr6 163234341 163234342 RIP_Alu_chr6_163_03 0 - pAlu6-117139445 NA NA SINE Alu Ya5 caaagcctccaagaaatatgagactatgtgaaaagaccaaatctatgtctgatcggtgtacctgaaagtgatggggagaatggaaccaagttggaaaaca
ctctgcaggatattatccgggagaacttccccaatctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgaa
aagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaagaaaaaatgttaagggcagccagagagaaaggtcgggttaccctcaaa
gggaagcccatcagactaacagcggatctctcagcagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaAAGAATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAATTTTCaacccagaatttcatatccagccaaactaagcttcataagcaaaggagaaataaaatactttacagacaagcaa
atgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagcgctaaacatggaagggaacaatgggtaccagccgctgcaaaatc
atgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaactaacgaacaaaataaccagctatcattataatgacaggatcaaattcacacat
aacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcagattggataaagagtcaagactcatcagtgtgctgtatt
caggaaacccatctca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1834 chr6 163784641 163784642 RIP_Alu_chr6_163_01 0 + Yg6AH99 CGGATAGGTTCTTGTTTGAG GCAACATTTAGCATTTTCAC SINE Alu Yg6 cagtgtctccatggaaacagctgggggctggtctgccagttcctatcatgtttgagaaccatgtgtaatcactttggaataggcagtatttttaaacttt
gcagtgagttgggtgaaagcttcagggatcaaatatttgaaaatgtctgaggagtaaaaatcatgccatgagataaagctttgtgagaaagagacaacgc
aaaacggtcacttttaatatttcaattctgagttaagacttcatatagatattttcatttattccttgccattttaatacagattcggataggttcttgt
ttgagaaaagaggttctgcaaagcttttctacttacatgaaactccatggtaatgacgctgtactggaaaaaagagaggttagatAAAAGATGAGGTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGATGAGGTCTCcaagttttagagtgaaaatgctaaatgttgcttagattttgtgtgtatttagttgtatttaaaaaggtaaatgaga
aatcatttgtatactggtttctgaaagatatatttgagtttattaaaactttcagattttttgtactttactcaatgcatgactatttcactgaaattct
cacgtttttgttttggtgtcaggagaggcactgttttgacagtatttgcacatgggatttacctccatccttggatatatttctgtgacaccagagcagt
ttccatgaaggccctggaagggaaattttcaatcaacaaacagcaaaggatcccactgaccatgggcacactttttttcttaacaaatattattgctgat
gtcttatca Other - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 60 470 146 NA intergenic
1865 chr6 167877782 167878092 RIP_Alu_chr6_167_01 0 - Yg6AH133 GAAAGAATCGTATGCTGAGG CAGACCCACTTGCTGTCTAT SINE Alu Yg6 tgtctcactgctgagtcaacctcaatggcttccagctctcagtctgaaatgacagcccaagctggggcccgcactccggcactgcagccagaagaaggga
ggtaagccctgggagccactcttgaggacacccctgcacagtggtacccctgtatccctggggcgtgtgttccaagacccgctgtggactcctgacacag
ccatactcccagacccacttgctgtctatcaggacacgcttccgtgcatgtcttccacccacaaactcaatgccttttttaacttaactaagcactcacc
atgcactgctgctgtagcttttgtcttttgagatgcaacagcaaaaccaacacaaatttcttttccttctttatagtttcactgatAGAAGAGTCATTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAGAGTCATTCCtactgtagatctcagcagcctcagcatacgattctttcctttgcttattgagaactgacaccttttcactttatggc
ttcttcttggcagaaccaaatggccagtctcttgcggccattactgagtgaaccaggagtgacttgaacaatgggagacttgaactgggagactctgaca
gttgatctgataaccaaggtgactacaaagtgactcacgggcagggaacgtgcacagtgtggatccgctggacaaagggaggactcatctctggggaagg
agatgagggacagtgagagtcctcatcacactactcagaacagtgtgcaatttaaaacttgtggattgctgatttctggaattttccatttaatattttg
tggcctcag UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 60 553 229 NA intergenic
1874 chr6 169040782 169041089 RIP_Alu_chr6_169_01 0 + Ya5ACA1574 AGGAGAATCACTTGAACCTG GGATCAAGAAATGAAAATCG SINE Alu Ya5 cctccaggcagatcgccatccttggcacgaccactgcaggtcatttcacactggggcccctgtggtcttgcatttcctctcccatctttgagcacattat
aaaaagttctttgttggccgggcacagtggctcatgcctgtaatcccagaactttgggaggccaaggtgggtggatcatgaggtcaagcattcaaaacca
gcctggccaacatagtgaaaccccgtctctactaaaaaaacttacaaaaaattagctgggcgtggtggtgggtgcctgtaatcccagctacttgagaggc
tgaggcaggagaatcacttgaacctgggaggtggaggttgcagcgagccgtgattgcgccactgcactccagcccagatgacagtgcgagactctGTCTC
AAAAAAAAAAAAAACCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA
CTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG
AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAGTTGTCTCtcttgtattttccactattgaatagagtgtgcttaggatgaaaatgacagagaatgcgattttcatttcttgatccgtcaatatttta
ctatgtgtctgggatgaagcactaattaccttaaaactgtaattaacttgtcaaatgtctttcctccaagaatcctgcaaaggtcttaaaggtcttaaag
ggtgagtaagtaatagtctgtgatataatttaaaaggaaggccacaaaccactttttctgtttttctttgatttcatggaatagtcttcattcttttctc
ctgtcctcctatttggatacatgtggctgccgtgagcctctagacgccctcccccacttccagcacttggctgacggatttgctggtctgtgacccctgc
cagaggc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 482 170 NA intergenic
1880 chr6 169862455 169862785 RIP_Alu_chr6_169_02 0 + 238980 NA NA SINE Alu Ya5 cacacgagtcacactgtagaaaagcctagttcatacgagtcacactgtagaaaatcctagttcacaggagtcacactgtcgaaaatcctagttcacagga
gtcacactgtagaaaagcctagttcacaggagtcacactgtagaaaagcctagttcacaggagtcacactgtagaaaagcctagttcacaggagtcacac
tgtggaaaaccctagttcacaggagtcacactgtcgaaaagcctagttcacaggagtcacactgtggaaaaccctagttcacaggagtcacactgtcgaa
aagcctagttcacaggagtcacactgtggaaaagcctagttcatatgagtcacactgtagaaaatcctagttcatacgagtcacactgtAGAAAATCCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA
AAAAAAAATAAAAAAAAAAAAAAAAAAAAAAGAAAATCCTAgttcacacgagtcacgctgtagaaaagcctagttcgcaggagtcccactgtaggaaatc
ctagttcataggactcacactgtagaaaagcctaattcgtaggagtcacactgtagaaaagcctagttcacaggagtcacactatagaaaagcctagttc
acaggagtcacactgtagaaaatcctagttcgtatgagtctcactgtagaaaagcctagttcaccgggtcatactgtagaaaatcctagttcatacgagt
cacactgtagaaattcctagttcacacgagttacgctgtagaaaagcctagttcgcaggagtcccactgtagaaaagcctagttcacaggagtcacacta
cagaaaagcctagttcacaggagtcacgct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1885 chr6 170418400 170418401 RIP_Alu_chr6_170_02 0 - pAlu6-170176227 TGCCAGTGACAATGGGACGTTTGAC GTTGTAATTCTAACGCCTCTC SINE Alu Yc1 agatgtctgaagaaagggagctggtggctgggttctctgggctcttggctccacacttcacctgagttctctttgtttctccagaagctgatggaactgc
cgccatttcccaaagtaaaggaggtgagctctggggtgggtgaggtttcatcggtagcccggcctccgtggatcgctgcatgagccgggaaggtaagccg
agcggtaggacgtccgacggtgagtgaagatgctggttctgtgaagggaacggtgggcacctttaatctcagtgtccgagtcctgcctgccagtgacaat
gggacgtttgacaaggtctcttagactttatggaagcatcatgtgatcagaattctgtgtgaggggacgggcatccctggcttaaGAATATTTTATTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGGGAATATTTTATTGTTGgatgcaaatgaaagaacaaagagaggcgttagaattacaacattttctagaaaacggtaccc
gattctgccagcacttactgagcactgggcggcctctaagcatgggcgataccgcagggactgaagcctgagggcacacacggacagagtctgtgtgtgt
ggcgtctgcacagcgtgctgtggagcacaggaggaggatggggggctggcaaagcgttccctggggcgatgctcaggtgagcagctggtgcctccattga
aggggtgattcacttttttccccttgcttgccagaagtcgagtaataataattatattttctaaacttctgaaaagttgcagacacatcataaacatcct
tagatacacaaggattattggga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison plus PCR NA 0 491 169 NA intron
1889 chr6 170932477 170932777 RIP_Alu_chr6_170_01 0 + pAlu6-170690219 NA NA SINE Alu Sg cagtaaaatatttgaagagatgtattctgagccaaatatgagtgaccacggcccttgccatagccctcaggaggtcctgagaacatgtgtccaaggtggt
cggggtacagcttggttttatgcattttagaaaggcatgagacatcgatcaagtacatttaagaaatacactggtttggtccagaaaggtgggaccaaag
caggaggagaggggcgcttccaggctataggtaaatttcagtgagtttgtctaaagacctgggatccatagaaaggaaattttcaagttaagataaaaga
tggtggagaccaaggttcttttgaagtcttatagaggctgtcctcagagacaatagatggcaaatgtttcctattcagatctttaaaagGTGCTAGACTT
GGCCAGGCACGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCCAGGTGGGTGTGGATCACAAGGGCAGGAGTTTGAGACCATCCTGGCCAATGT
GGTGAAACCTCATTTCTACTAAAAATATAAAAATTAGCTGTGTGTGGTGGCGGGCGTCTGTAGTCCCAGCTACTCAGGAGGCTGAAGCAGGAGAATCGCT
TGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGTCACTGCACTCCAGCCTGGGCGACAGACTGAGACTCCGTCTCAAACAAAAAAAAAACAAA
GTGCTAGACTTtcagttaatctctttaggattgggagggcctggaagaaaaatatctagctatgttaatagagattctttacagatacaaattttccccc
acaaaggacagctttgcagggccatttcaagatatggacaaaaaagcctatgttttggggtaaaatattttgattttcttccttgtctcataatgttatg
acagagtcaggttggaaagtaagtcacaatatatagggttaaataaaatccatctgatgagaatttatggtttgtaggacatcactccccagacccttta
gatagggaatttgggtaagataaaaaaaaaaaaagtcagagcttagtcttcacttgcaagggtgcccctgtcttcctccactctccatccccaagctggg
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
612 chr7 3588441 3588748 RIP_Alu_chr7_003_01 0 - Yb8AC1402 TGGTCACAAACAACTGTGGG TTGAAGGCTGTTTCCCAGAC SINE Alu Yb8 tctatgattgtcctttgcacaccaaattgacaatgtctgcttacaagtttctctcttctgaagacagacagctcctccaaagcaaatgctactcattcgt
tcattaacttacactcagtcatgtattcattcaacagatagttactgatcacacagcatacatgagttgctatcatatttctgactccagtgtctggcac
tttgatgcgtggtaggtgatgaatgaagaatcctgtggacaatgcagggtgggaaatacgttacacgtgattaggatcacagttagggactggtggaaga
ttcactcgtttcgagaatcagtgcaaatactggtcacaaacaactgtgggaaagacagtcaagactttatcaaataattttttcatttAAAGAGGTACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGGAGTGAGCCGAGATTACGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAA
GAAAAAAAAAGAGGTACTAataaataaaaatgttatgaaaggctgatttagaaacatcagtgtgaatgaccagtcaagcacatatgtgtcagagctggag
atacatctggtctgggaaacagccttcaaatagaaaaaaaaaaataaaataaaaaaaaaggctttctttgaaagttgagaaggcaacaaaacaaagccac
aatctgctacaggtaaaatgtaaagtattaggttgaaccataggcagttgccactattccattgcttttgacttacaaaatgacaattacatatggtcca
acttaatagaaaccaagagggccaaaatagtgaagaaagactattaggagctcaaaaaccaaacaccttaaactatttctaagcttctaatttgaacttt
atttact UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 500 181 NA intron
619 chr7 4580996 4581303 RIP_Alu_chr7_004_01 0 - 11879 NA NA SINE Alu Yc1 gcagctggcacagacttggatgtgacagacaggcacggcgaggttcatcagtcagagacgaatcctcctcaccactctccccgctcctctctctctcgtg
gccttctgatttgcccggagagccttctcacccacctccaggaaaagccagcccaacttcacacacccaggtagcacccctgctcatggtgcatggcagg
cctagccctgggccctccaccctgcccaccttcccggagggggttgaaatgttccatccagcagcagagctgagggctgcagcctctgcctgaggaggag
ctgggacggggccggaaaagcccagcagagacagggtcccatgcccgtgggctcacaagacaacccaagactgaaactattttccctAAAGAAGTCAGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAGTCAGTGaaatgggtctgtttttaaaatttcagtccagagggaaatgtgtgtggttgtatccccaaaatcccattcttctaagcagc
tgtgacttcggggtttgggtgacagggaggacagaggaaaggacgcagcagctctaatgggacaatcctttccacagattcaactccgacagaattcaag
ccgcacggtgtgggtaagggcccccttctcgaggcacggaccccactcgccaccctgcgaggggccgcggtacccaccgagatcccctgcaaagcacaga
ttccaaaccctccctctggtcaccaaacgtagcagcttttcgtatcaaaacccaaccaaaaaaacagtaagtatgtgatgaaaaccgtgtcctgagcact
gaaaaac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
640 chr7 7315567 7315851 RIP_Alu_chr7_007_02 0 - 7830|Yc1RG330 GCACAATTAGCATTACCGTTTTC TCCTGGGTTTTAATCTTCATCTG SINE Alu Yc1 tgtatatttattatgtataagtaaagttttaagtgctcatttaatactaataccaccttttgagacatgatctattcttatttccattgtacagattagt
ctactaaggcacaaagagtttaagcaatgggtccaagtctacagagctagtaagggacagactgagtattgaaacccacaagtctgctcttagctaccat
attatatttatccctttaggaaaaattgctgaatttcctgaatatttggcctgaaataaatgcatttctttttgacagtgtggaagttctatctgtcttc
ccttctggtggactctggctagggacaacagtttgttgaaaggtgcatttctcctgggttttaatcttcatctgaaagtgcaggAAAAAGGAAGGGAATA
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGA
GCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGAAGGGAATA
tcttgggagaaagaaaacggtaatgctaattgtgcattttcaaatactatatttcatataagaccttaaaatagaaacctttaaacttgcaacatttgca
aagattccacgagaggttctagatagggcctgcctatgtctatgaatttacaaatggtctttctcttgaattacgctcactttctgttgctttagggatt
ggcttttcttcattaaagggttttcagaaaaggtggccaaagaacaaaaggaaaaaaatgcatgtgttaagtcaggaaaaaatgtgctcctggcccattt
tcacaaattatttctgtcaataatactttccacatgtaaagtagctcctagtctgccctgaatgactttgttgccttagcaaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening|Trace comparison NA 60 384 84 NA intron
642 chr7 7490529 7490844 RIP_Alu_chr7_007_01 0 - Ya5NBC214 TGTTGTTGCAAAGGACAGGA ACGTCCACATTCCCATGTTT SINE Alu Ya5 tgaccaataggcatattaaaaaaacgttcaatattgttgatcatcagagaaatgcaaatcaaaatcaaaatgagatatcatctcaacccagttaaaatgg
ctttaatccaaaagataagcaataacaaatgctggcaaggatgtgtagaaaagggacctcataccctggtggcaggaatgtaaattagtacagccagtat
gaagaccagtatggagattcctcaaaaaaactaaaaacagaactactatatgatacagcaattctattgctgggtacatacccaaaagaagaaatcagca
tatcaaagagacgtccacattcccatgtttattgcagtactattcacaatagccaacatatagaatcaacctaagtgtctccatcAACAGATGAATAGAT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAACAAAAAAACAGATGAATAGATaaagaaaatgtggtacatatacacaatggaatactatttagccataaaaaaagaatgaaatcctgtcctt
tgcaacaacatagatggtactagaggagatcatgtaaagtgaaataaagcaggcacaaaaagacaaatttcacattttctcactcatatgagggagctca
gtttttttcaaattgaactcatggagatagagaatagaatgatggttaccaaaggcaaggaagggtagcagaaagagggaaataaaatggggatggatga
tgggtacaaaaatacagttagatagaaggaataagatctagtatttggtagcacaatagggtgactatagttaacaataatttattgtatatttttaaat
aactaaaagagtgga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 55 500 170 NA intron
650 chr7 8523515 8523831 RIP_Alu_chr7_008_01 0 - Yb8NBC237 GCCAAAATCAACTGCCAAAC TGCTGAGGATAGAGCTATAGCAGA SINE Alu Yb8 tatactattttacatcaaaaataaatatgtctaacccatgctggactagcctaacaatatgttactgacttcaaaaagaaaacaaagtaagaacaaagag
aaccaaatatacaaacatctagaaggccaatggggtcaaaaaataagtatgtccgtaaagtctttgttttcttctccaggtgtattgagaatctaggcca
ctcgtaggcagtcattacttggaaatggttcaccctttagttttccttttagtaggaatactccagggagataacttgaaagttatgttgccatatctaa
atttaaaactgctgaggatagagctatagcagaaagatgtaggaaataaaatctactttccatggaatacagtatccttgtgttatcatAAAACCGTAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAACAAAAAACGTAACagttgacatgctttgttcaacaaccatgtagaaaaacctgaaaagatttatgagtttggcagttgattttggc
cttcaatgtcatttgattatcatgtttccccttgatcttgttttcctgaaaaagtactcaaggcttaattcctcaatccagaaaaatgcttctttaaaat
gtaaaatatgagttgcagaagacagagaacaaacctcgcacattagtaaactatccctcctccctcatggaagaattgattaaaagatgaaaacccacca
caagatttccagataggcaaggaggcccatttgccccagctgcctggagacattttaacagcagggactttgagcttttaatgaaaatcaggttgaacag
tgtggaatcaggaagc UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 491 164 NA intron
675 chr7 11797484 11797739 RIP_Alu_chr7_011_01 0 + Ya5NBC361 AATATTTTCTCCCATTCTTTTGG TGTTAAAAGCGCAAGTCACAA SINE Alu Ya5 caaaacaatgggcaaaactgagagtacagaaataagctgttatactaaaggtcaattaattttcaaaaatgggtctaagatatttaatggggggagataa
agctttttaagaaatggtactaagacaataatatcttcatacaaaagaatgaaattagaatccttcatactataaaggaaaattaactccatatgaatca
tagacctaaatgtgaaaggtaaaactataaaaattcttagaagccacagaggagtacattttatcctttaattagtaatggtctgttagctaggatgtta
aaagcgcaagtcacaaaagaaaaaagtgaattggacattatcaaaattaaaaagaaaaaactttttgtatttcaaaggataccatcAAGAAAGTGAAGAC
GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCG
GGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCG
CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTGAAGACaacccaaa
agaatgggagaaaatatttgtgatcatatatttaataggggacttgtgtctagaattaataaagaactgtcaacttcaacaaaaagaaaaatagcccagt
ttaaaaataggcaaaagatttctcaaagaatatctattaatgatcaatagacacacagaaagatacttaatataatttatcatttgggaaatataaatca
aaatcacaatgagatatcataccacttcatattcactagggtggctaaaatcaaaaggcagacaataagaagtgttgatgagcatgtggagaagctgaaa
tcctcataaattgctgatgaggttctaaaatggtacagacacttagaaatttggcagttcaccaaaatattaaacatg UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 423 131 NA intron
675 chr7 11831955 11832266 RIP_Alu_chr7_011_02 0 - pAlu7-11768949|20744 NA NA SINE Alu Ya5 taaactgcaggaattgagtatgtcagattttggtatacgtggagatcctacaaccaatccctacatacaccaagggatgactatagttacgtgtggataa
actccccttaataaaatgtcttatgttactaaattttgaagaattatgaagatagctatttttatatattccttttgtcatctaaatactccaaaattat
ttttagtttaaggcatccatttgctaaaggctaaaataagaattttgttcattgatttcctttaactaaaaaataaaaaataaactttgtttcttttctt
taggcaatgttttatttaaattataagagaaatgtgattaagtggttttattatttaataattgtaaaatggagttcaaatgtatttAAAGTAGTATAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGTAGTATAGAatcattattctatagacaatctcagtaatgagaaaccgtaaatattcttccttgaaaatatacaggcatgcctcag
accactgcataaagcaaatattgcaataaagtgagtcacacaaatttattggtttcccatatttacactacactatagtttattaagtatgttgtagcac
tatgtcctaaaaatgtacataccttaatttaaaaatattgctaaaaatgctaatattcatttgcacctccagtaaatagtaatcttttttgctggtggag
agtcttgacttaaggttgatagctgctgacgagggtggtggttgctgaaggttggcgcagctgtagcaatttcttaaaataagacaacaaagtttgctgc
atcagtggatt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
712 chr7 16709540 16709866 RIP_Alu_chr7_016_01 0 + pAlu7-16646537 NA NA SINE Alu Ya4b tgagcatggaatgttttcccatttgtttgtttcctctgatttctttgagcagtggtttgtagttcttgaagaggtccttcacttcctttgttagctgtat
tcctaggtattttattctttttgtagcaattgtgcatgggagttcattcatgattttgctgtctgcttgcttgttgttgatgtatagaaatgctagtaat
ttttgcacatagattttatatcctgagacttcgcttaagttacttatcagcttaagaagcttttggggttttctagatatagggtcatgtcatctgcaaa
caaggataatttgacttccttaattcctatttgaacacactttatcttttctcttccctggccagaactttcaatactatgttgaatAGAAGTGATGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTGATGAGAGgagggcatccttgtcttatgtcgattttcaaggggaatgcttccagctattgcccattca
gtatgatattggctatgagcttgtcaataatggatcttattattttgatgtgtgttccttcaatacctagtttattgagagttttaaacataaagggatg
ctcaattttattgatggccttttctgcatctattgaaataatcatgtggtttttatctttagctctatttatgtgatgaattacgtttattgatttgtat
atgttgaactaaccttgcatcccagggatgaggtcaacttgatcatgatgtttaagctttttgatatgctgtggattcagtttaccagtatgctattgac
aatttttgcatcaatgttcatcaaggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
771 chr7 24451182 24451488 RIP_Alu_chr7_024_01 0 - Ya5ACA1648|pAlu7-24386109|238947 GCCTCACAGTTTGGTTCTATGG GGACCTGCATTTGCTTTCTT SINE Alu Ya5 accactcgtccctttgactttcactcctttgctctaagtaagagctatgaagaccatttatttcttcaggaaaatgttatatgatcagcaacagtacttt
agacaacagtagtccttggtttaattcaggactttaggagaagtaaaggaacagaaatgatcaatgacttgaaaactccattccttagtatgtgtattaa
cctaatgcttccaaattgggtgaggagaagtaggaatgtggaaagactaatggcaaggggttgggggtcaggggagagtcatgtgagaaggcagaatcat
gttagaaaaagaacccaagcacatctgaagattttttcatatcagcctcacagtttggttctatggaagaagagaatctcactAGAAAATACAGAAATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAATACAGAAATTGaagggagaaaaaaaggtttttttagaaactgtagctataaatatattaacatggaaaaccaacatacttggattcaa
ctgggatcaattttactttttctaagaaagcaaatgcaggtccacatttattaacatatagctttttaagctctgagatgttgtcaaaaacttggaacct
ctaattcactttaaggtcagattttttttattagctttcaagaggcaagtaccaacttaaatttaactaatcaaactaaaaaagacaaaggaaacacaca
caaaaaataaccagaggagcaagtgagccacatactatttaaataaataaatcttgttttctttttttaaattaaagagcactattgcaacactagcata
actcaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 60 499 176 NA intron
774 chr7 24817853 24818170 RIP_Alu_chr7_024_02 0 + Ya5ACA1721|pAlu7-24752784 GTTTCAACATGTAACCAATGAG TCAGAAGGGTAAGCTCAAAG SINE Alu Ya5 acccaggctggagtgcaacggtgcaatcttggctcactgcaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccaagtagctgggatt
acaggcatgcaccaccatgcccggctaatttttgtattattagtagagacgggggtttcactatgttggccaggctggtctcgatctcctgacctcaggt
tatccatccacctcagtctcccaaagtgctgggattataggcatgagccaacccatccagcctggttttatttttaaaaaacatattttcttttatacaa
tgttcctaaaatgttgtttcaacatgtaaccaatgagaatatattaatgagacattccagtttaaaatgtcaatagtacttcaagattGAGAAACTTTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAGAAAAAAAAGAAAAAGAGAAACTTTGGtttagatactggttgcatcactaaccaaatatatggctttgagcttacccttctgaatatcactcaatatt
cccacataaaaatggggagaataatacttatgtcacagtggtaatacctaaaactttttgaaagtactcacaatgggccaggcacaggaaaccaaaataa
ggagactgaagttcagaaaggttggtgaactcaagttttaccactagtgagtggctgagcaggattagaaactagtccaaatatgatcctttacatgcct
ctgagcctccagcttgaggggtgtatggctcccttgaccattcagttggaggggtcacttgcacttccatggcctccttgcacagagctgatcagaatta
cgcagatcattgacaac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 470 141 NA intergenic
793 chr7 27287589 27287850 RIP_Alu_chr7_027_01 0 + Ya5ACA1672 GCACATGTAATGGGGCTTTT GGGCACTGTACAAAATGCAA SINE Alu Ya5 caaaacagtgctgaaattctctcacaaactcatctttacactcttccaaaatgctgaatcggtcaccagagcttccactattacttcacctaatgaccgg
cttagaagcccaacacctggtaggtactcaacaagtaaatggatgagttggtgaattaagttttaaaattaccttcatttgctacacatttagataagat
tctggagccattctcctcttaggagtcagtcgcacattatttctcgggatgagttatctcctgggaagatttccaaagaatcattcattagatcactttt
cacttatttactcactattcatctaacaaacatttcctgagggcctactacatacaaggctcaacagcacatgtaatggggcttttAAAAAATTACATAT
TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATTGC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATTACATATataaatatacaaagaaaaaaaggca
tatcaaaataaagaacaaaagatataccaaaatgttaacagtggtgggatcattcatcatttttcttccttctttttgcttatttgcattttgtacagtg
cccatgtcttgtttatttaaagtgttctaaagcattcaagatgcatcttgccctcaaaaaacatggatagagtgagtgggcaggaaatgggacaagacaa
gctgaaaaatgacaactctgacacaagtgcagaccgtgatcatttccctaagaggcttaaatgctgtcagggttaagaggaaattgcgatgaccttgaca
gatgagagaccaggtcacagaggtaccatccttgaagcacaggagggtttctccagggagc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 437 162 NA intergenic
795 chr7 27556628 27556963 RIP_Alu_chr7_027_02 0 - pAlu7-27491577 NA NA SINE Alu Yb7 ggtaattttgttatgtgtgataatataattatggtgattctgtgtttttctagtctttatcatttaaagatactaaactaggccgggtgcggtggctcac
gcctgtaatcccagcactttgggaggccgaggcgggcggatcacgagttcaggagatcgagaccatcctggctaacacggtgaaaacccatctctactaa
aaatacaaaaaattagccgggcgaggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccctggggggcggagcc
tgcagtgagctgagatcacgccattgcactccagcctgggtgacagcgagactccgtctcaaaaataaaaaataaataaaaataaaaAATAAAGATACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGATACTAaactaactgtaagtgaaatgtcttgatgtctaagatttgctttaaaaactcc
aggggaaaaaattaatgttagagggggtaataaaacaagattagtaaagtgtcggttcattttactgttcattctcctttgtgtatgtttgaaaatttct
gtaatagtaaaaccaaagcaaataaagaaatgaaacagattagtaacactccacatatgacccactgtagcagaaacactgcattttagaatatgaacgc
tttgtacccttagaagtgttgtaattcaggtaatggttgatagagttactgaaagtttttcacatcttcagctaaaaaacctttagaattatctccaaac
tttaatccgataggacacacaaacatatgaaagga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
806 chr7 29046684 29046985 RIP_Alu_chr7_029_01 0 - Ya5NBC203 CAGCCTGTAGAAGCTGGAAAAG ATACAACAGTTCTGGAGGTCTGAAG SINE Alu Ya5 tcaccactgactgagcctttaaaaatcccatgcaaacttaagagttataacctggggccaatggagggcttcagtgaggtttatgggccccattaaattt
tatgattttgtgcactgaattattttaaaagaatgagtctgatcgaggaaggtttagaatctgctgctttaagaaatggtaccagacattacgtcattac
cataatgaaaatctgcccttttttagtgtcatgatctcaaacaactaatattttcattcactcggtcactatatcagtttcttattgctgcagcaacaaa
ttaccatatacttggtggcttaaaataacacaaacttattatacaacagttctggaggtctgaagtctgaaatcgttcaaggtaAAATCAAGGTGTTGGC
CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGA
AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAA
AAAATCAAGGTGTTGGCagggctgcattctagggaaaagagaatccattttccatttcttggccttttccagcttctacaggctgccagcagtcctgggc
tggtggtctccttgcatcttcagggccagcaatggcccgttgagtctttctcactttgcatttttctgaaactgacccttctgtctccctctttcacatt
taaaggacccttgtgaatacatcagacccacaggaagatccaggataatctccttaatctcaaaaccagctgagagaaaccttaagcccatctccaacct
taattcccactagccacacaacctaacatgtttacaggttccaagtggaagtcgacatcttgggtgggagtgcatttttctacctaccactgttacttca
c UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 55 445 128 NA intron
820 chr7 30843830 30844146 RIP_Alu_chr7_030_01 0 + pAlu7-30778761 NA NA SINE Alu Yb7 ctcagtgcaatgagaagccatttgaggaactgacccagaagcgactctagaacaatgattctcaatcgggtgttatcctcgcaactcccagggattttta
gcaatgtcaacagagggtgagggtaggagtggtactggcagctggtgggtagaggccagggacactgctaaacattctgcgacgcacagggcagacagct
ctccactcccaacaaagaattatctgaacccaaatgtcagtaataccgaggttgagaaactctgctctagatgttggtgtcccccgggtccttgctcttt
tagaataacccagggtcactgtactccagcctgtggctctttctatatatactctgggttcaaattttatcttcaccgcttgtccaaAATGTCAACGGTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATGTCAACGGTGcagaggttgagaaactactgtacaggaagaagggaagcagcacaactacttagacctgtgctgaatgcagt
agccactggccacatgtggcttttgaatacctgaagtggtcgggcgtggtggctcatgtctgtaatcccagcactttgggaggccgaggtgggtggatta
tttgaggtcaggagtttgagaccagcctgaccaacatgacgaaaccccatctccactaaaaataaaaattagccgggcatggtagtgtgtgcctataatc
ccagctacttgggaggctgaggcaggagaactgcttgaacccgggaggtggaggttgcagtgatggtgccactgtaccccaggctgggtgacagagcaag
acttcatctcaaaaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
825 chr7 31532774 31533051 RIP_Alu_chr7_031_01 0 + Yb8NBC192 CTGCTGTACCCTAGGCTCTTCTATC GCTCCTCTGCTTTTATGTGTTCTAC SINE Alu Yb8 caatgctattataatttattggtgcaatgttctcacaagttccaggacacaaagatctttccttgacataatccctccatgctctccccagccacacgat
tctctccccatcccctcacaatgcatggccgtgtggctctacattttgtccgacagacagtagctggaataaaaataaattccacacattaatttaaata
agcccattgggcagataaagtgtttgggcataccagtcaatattcgttgcctaaagcttctactccgaaagaaaccagcaccatggccaatgctgctcta
ccctaggctcttctatcccagaggaaagcatcttgtttctattgtcaaatgttcgggggattctttgttcaaaggaaatcatacttAGAAGTCTAATGTG
GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCG
GGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCG
CCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTCTAATGTGtagaacaca
taaaagcagaggagcaaaattggagtaggggaggtagccccaagtctgcacccaccttaccgcccccctcaaccactgccttcatctaatggcctttaag
gaaagccctagggcccttgagagcagggtcagaaagcaccgcactaggtaagtaggcagctccgagcttcccttccactgcctacatcgtaagcgtctct
gctcacactcagccccaagcctcctgtgtcgagtgggatgagggttttcattgtgtgggtaatgtatgggttttaatattcaagtttgcagtctctgtct
ttgatataacctgtgcatttctgaataggaacaatgtccctggcgactcctcactctgagcagcagccaaatctgca UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 55 423 132 NA intergenic
838 chr7 33176786 33177099 RIP_Alu_chr7_033_02 0 - Yc1NBC02 TCTCTCATGAACATAGATACAAA CGTGCATTCTTGAGATAAAT SINE Alu Yc1 ggggaaggggaggggagaggagggggaagggggaaaatataaggaagaacatcaaaaatagaactgattaagcagaagaaagaatctgtgaactcaaagt
cagattattagaaaatacagtgagaggaggaaaaaaatgaaaggaaagaagaaaggctgcaagatttagggaacagaatcaagcaaaacaataagagaaa
accttccaaatctggagagaagtataaatatccagatataagaaactcatgacatcaaaacataaaatgtggggggatggagtaaaaattattcacataa
ctgtagaaaaaaactaaattacaaatcaatttctctcatgaacatagatacaaaaattctaaaatacagtttggcaaattaaatcTAAAAATATAGTGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA
ATAAAAAAAAAAATAAAAATATAGTGAAaagataatatatcatgaccatctataatttatctcaagaatgcacggttgggctaacattaaaaattaatca
atgtaatccaccatatttaatcaaataaagaagaaaacgataagaatgtctcagctgatgtagaagtagtcttgaaaaaatccaatatccattcctgatt
acagtctcagcgacctaggaatagaagggaacttcctcaacctggttaaaaaaaaaaaaaaaatctaaaaaatacttatagctaaaacatacttaatggt
gaaagacaatgtctgttctcaccatttctattcaacattatcccagaggttctagccaaggcaaaaagcaagcaaaaacaaacaatccagttggaatgga
agaagtaaaactg UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 60 443 102 NA intron
841 chr7 33672096 33672412 RIP_Alu_chr7_033_01 0 - pAlu7-33606992|Ya5NBC209|3791|Ya5ACA1653 CCTGCTCACTGCTTTTGCTT CACCTAGGAAGGGTTAGGGC SINE Alu Ya5 aacaaaaaaaatgaatggatattggtactttctaccccagggtgtgctctatgctggctcccaaagatccacagcaggactaagctttagattcccagta
gtaacttgcttgatgatgaacccttatcttcgctgcccttcctccctgcctcactttcccactctcctaccagtgtttcctgggatcacctccattaatg
tccttatcttagtatctgcttctggtgggacacagaccaagacatcatttgtgaaagagatcagtccttttgctacaagctctccttttccaaaataaga
ggtgaacttcgatggagtcactcatgtgaaaagtagttactatacatatcacatgtgccaaggcccctgctcactgcttttgcttAGAAAGCCAGGCTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAAGCCAGGCTCAatcctattcttcatcttcccatagactaaagagaagtggggaataatgatgaaaagtcaaggctccaga
gtcagagcacctgggattggatcccagccctaacccttcctaggtgtgcaattttgaataattcattctccatgtctccaagtcttcatttctctgtctg
taacatggataaaatagttgtgtctaccgtaagagatttaaatgagatcacttatgcaaagcactgaacacatcatgtggtgcacagcacatgctcaata
agtggcagattctcttattgaccttctagtttcaatttaaatgccctctctttgcggaagccttgcctgacctaagagtaaggttttctcatatgttccc
acaagatccctattct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Selective database search followed by genotyping |Trace comparison|Genome comparison|Candidate screening NA 55 447 116 NA intergenic
849 chr7 34622309 34622656 RIP_Alu_chr7_034_01 0 - Ya5NBC28 GGGTACATGTGCAGGTTTCTTATAC GCTAACTGATGAGAACACACAGATACATAG SINE Alu Ya5 tgtagattgaagtctaatggagagcatttacttcactttcttcttggcagttatctttgttctgaattcgtgcctttttgttctttctctggctcagaca
aataacaatcaagcacattgtggttctttatgatttgttatttctacaaatgcatctcagcactaatgttgtgaaagccaccatagggaggaggttctga
ggaatgattagaaattgaaggctcgtaagaaagaatgagataatgtgctttgcagggacatggatggacatggatggagggcattatcttcagcaaacta
atgcaagaacagaaaacaaaatactgtatattctcacttataagtggaagctaactgatgagaacacacagatacatagaggggaacaaaacacaCTGGG
GCCTATAGGAGGGTGTAGGGTGGGAGGAGGGTTAGGATCAGGAAAAATAACTAATGAATATGAAGCTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTG
GATCACGAGGTCAGGAGATCCAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCT
GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGG
GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAATACCTGGGtgattaaataatctgtacaacaaacccccatgacacaagtttacctgt
ataagaaacctgcacatgtacccctcaacttaaaataaaagttagaaaaaaggtttaaaaaaagaaattgaaggctcctctgaaaactaaaagaaaaaat
tatctcttgggaaaaggtgacaaatagagaaagagaaaaatggaagactagctttaagaaaaaaaaaatcgatcgtctacttagacaaaactggggtttc
tacctgtgatccatgaatttaaaattattaaggctggcaacaaacagaggaggaggtggcatcagagaaggatgaaaaagaaagcacacaatggcagaac
cctgtggagtggaacatcatggtgaggttataaggatcttggggctc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 55 474 191 NA intron
869 chr7 37250530 37250844 RIP_Alu_chr7_037_03 0 + Yb8AC877|pAlu7-37184419 TGACCTAGGTAACTGCTCCTAAA CCCGTCTGTATTTTAACAGTTGG SINE Alu Yb8 ccctcaaagtaaaaaaaaattaataatacaataaaacagtaaaatctcaggttagttcaaatggaactggggatacacattagaagagctttcatttgag
gaccctaaattgctaacttcagtcattacatcagttattttaattcacagtcaatcataactcatccccgtctgtattttaacagttggtacttctcctg
tactggtttaagtttcatttttaattaacaaatagtaatcattcatatttatgaggtacaattggacgtattgatacatgtatacctaaggaatgatcaa
atcaggctaatgaacatatctatcacttcaaatatttagcattcctttgtggtgggaacatttaaaatcccctcttttagctgttttGAAATATACAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAGAAATATACAATAtataattattaactattgccaccatgctgtgtaataaaatcaccagaacttattcctcctgtctgactgaaac
tttctatctgggtttgaccaacatctcctctttccctgccaaccccacctttcctcttgttttcttgaagaaaagacatataaagcaaactaattctagt
caagactttaggagcagttacctaggtcacttgaagaaaattaaatacaaaatgcatctctttttatgatttcagcaagatagtttaataaagaacctga
atagaaactactgaatcgggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggaggatcacgaggtcaggagatcgaga
ccatcctggctaac UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 763 436 NA intron
871 chr7 37609890 37609891 RIP_Alu_chr7_037_01 0 + 9775|pAlu7-37543417 NA NA SINE Alu Ye5 aaagctctttgacctgacatgtggacccatcaagagtatagaccccaaatcaagagtttcttcttccttctagtaatagttgtctgttttgtaccccacc
atgcattctgggtacactttattcaaaataattcagagagaaaagcttctaacttagttctttataatgaaatttatgttgctttaacgactgtctgttg
cctggatatgctgtgtttcttaagtggggttatacattaagcattcctatgtctcttccttcacagtattttcccacctttgtgataaaatgctttaact
gaatgagtgttactgtgatttcaaaatttttcatcttaatcatcatcagaattgttttttttcccaaaaaggtaatgaggattgattAGAGAGGGGAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAGAG
AGGGGAGCAccagttctatatttaccatacaatatgttcaatctcttagctctatataagctgactgcatcattttttccagacttaactaccttcatgc
agtacttaacttgagctaagcacaacaattggtttccctgtactctccagggaaatttgctcacagatttcacagaacaagataaatgtcagtgtactca
aattacattgtgagcaaaagttgtgacatttgctctctctttgagttctgaccctagaacattctttccctccatctccacctatcaattttttaagatc
cagagaacctggaaataggaacagtataaactgggctctagagaatacttaagttgacatagctgcttcttgaaaactactgattgtcagtaaagc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
873 chr7 37771756 37772062 RIP_Alu_chr7_037_02 0 - pAlu7-37705191|Yb8NBC412 CAAAGATGGTTGTTGAGGTTGA CCCAGCAACTTCCCCTTAAT SINE Alu Yb8 gctggcaatctaacaaaggtgatattgaaatagttttattttaagctcatatcattcaaaatcagctttagagaaatgttttaacgtattccccagtctt
ttcttcacttagtcaacatgacttctataagtaatgcacaaatagcatgcaaccagtaaataaaatcatagttgaaaattattatcaattatcctcccaa
gtcaagtgcatttgatgtggacttctgtcttctaatctatgagatgggcataataacaatagtagctaattcaaagatggttgttgaggttgaataaaat
aatcagtataaaactctggagagaatgtgacacaaaacaagtgctcactgatgtagattgaggttgatactactgttattttctctatcttAAAAATGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAATGTTatgtgcaaaatgccagggttcatgagagatgtatttattaaggggaagttgctggggtttttttttaaactacatgtatattata
cttgacgttgcctgagcatggctagaggtgggtgcatgtttctgcacacgaatgtgagcaatgaggaacagacagagataccttagggaatggtttagct
gacgggtccagcagagcccactgagggcactgcctttgtaggcctccaggaccctgctctaatccatagcagattcatacagtcatacaggtttgatttt
gttggtccatggagggttgatcaggatctcagggggaaagaagccagaggtagaagacatctaatattttgagtgctgattgcctgcaaagctgtgtgct
acacac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening|Genome comparison NA 60 500 185 NA intergenic
875 chr7 38054881 38055191 RIP_Alu_chr7_038_02 0 - Ya5NBC38 GTACCCTCTAATTTACAGTCATCTCATACC GAACTTCTCTGGCTTGAAAAATCAG SINE Alu Ya5 tactacactccagttgtgataaaaaagaaaaatgtattcttcacgaacttcaacattttgatatgcaaaaacatagtatataaattagatctacctgatt
acgtagaatcagaccaattatttctggaattgagggctcatatttttaataactgtcctcctgcctctctgttgacaggttttataaatattcatttaat
tacacacacacacacacacaccttgacaaataatggacatgaacaattgactagtacttgctctcattcttctagatgtcatcacaatggatcccaaaga
caattggtcaaaagatgcaaatggtaagcttttgtgtttttcctttcctcctgatcattttaagttttgaacttctctggcttGAAAAATCAGGGAATGG
GCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCTTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAGAAAAATCAGGGAATGGattttgctaggttggatgctgcagaatggacctagtgatattttaaattagtccctctttttctaggagttgt
attaacaaacctaactactgcttcgggtatgagatgactgtaaattagagggtacagtgatatgctttcagttatttcaaaaaacagactttattcatcc
gtctgtcttttttttttttttttttttttttttttgagacggaggagtctcactctatcacccaggctggagtgcagtggcgcgatctcggctcaccata
acctccgccttactggttcaagcgattctccagcctcagcttctcaagtagctgggactacaggtgcacaccaccatacctggctaatttttgtattttt
aatagagatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 487 170 NA intron
877 chr7 38281712 38282027 RIP_Alu_chr7_038_01 0 + Ya5NBC216|4601|Ya5505 GATGTGACCCTGGCTTGTAAA CAGAGTCCCTGTGCAAAATG SINE Alu Ya5 ttgtcaaatcaattattatcctgagaaaatggtatagtatcagaaatatcttatttagaataactaaacatctatttctaatattttgttttttaattta
gaaattaactagcatgtatttaattaggataaagtgtccaacatttttgatacaactgatagtgattttctccaatttatgaagtcagagatcctgcaaa
gaggggaatgcctttaactagttcactattacagccctagcacctagtacacggcaagcatgagtaaatgaataaattccataaatgaacaaacaagcca
gtgaatgaagaaacttggcactcattccactataagagcatattccgatgtgaccctggcttgtaaaaacttaatgtaaccagcagtAGAACATACAGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAACATACAGACacagagtaccagcataccaggctcttgattctgatattatctgcttaaaagtttcattttgcacagggactc
tgagacatcaccatttccccaaatgtggcatcctcaggacacttcttattagctgtcaaaaccaacttaatttctttattaagatgtttctttgttctca
gaaataaaggaaaaattaagttgagcttatcacagctacagattgcagacctgagcactctccccttcgcaatgccctaaggaaatctgcctccctggag
gggagtgtcagtgcttcctgcagaccctcttgcagtggaggaggcaacccttgctgtccttcacttactatggagatggagtatgaggaagagttttttc
ctagctctcttctga UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening|Trace comparison NA 55 456 141 NA intron
885 chr7 39365310 39365611 RIP_Alu_chr7_039_02 0 - 33173|Ya5495 GCCTTAGTGTGGCCCAAGT CAGCCCCAAACCTTGACTTA SINE Alu Ya5 agggggaggaggagggagtctggggctgtgtagtgttttctgataccacttctgacaccaaatgcgtgtctattattgacaccgaatatttttcacacca
attctctgacaccaactgggtgtccaatagttcagttcaattctgacactatctacctggagttagtgtcagatcccacaagttaaagggctcagtccca
aaagactgcccctatttcagctgctagccaccagtgtggtccccagtgaaccacacttctgtctaactgacaacaaagttggggattcctatgatcctca
cccttgccttagtgtggcccaagttaactagataatttgttagaatgaactcaagaaaatactctacttactattacagtttattatAAAGGATACAACT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGGATACAACTtagggccaggtggaagagatccctaagtcaaggtttggggctggagggtacagagcttccacatcctttccaggtactaccctccc
agcacacctgtgtgctcaccaacctggaagatcctcaaatcttgtcatttagtggtttttgtggaagtttcattgccaatgcataggcatgattgattaa
atcatttgccatgggtgatcgaactcaatctccagccttcctccactccccagaatgaggtgggggagggagactgaaatttctaaccctccattcatgt
ggctggtttttctggtgaccagctttcagtgagtcagctcatgagtatatgaaagacaataaatttcagggatttttggagttctatgccaggaacaggg
t UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 55 452 138 NA intergenic
887 chr7 39643286 39643584 RIP_Alu_chr7_039_01 0 - Ya5ACA1696 TGCAGGTCCATACCTGAGTG CATAGGTTGGGAGAGGTGGA SINE Alu Ya5 ttttacaaattcaattattcatatttctttaaaatgcttttttgtaaccaactttccattacaaacataaaacaatgacaggttgaccactgctaaattt
taagagtaaattatatagaaaactagattcataatgagaaaattaatttcacatgtgagcactttaccttgatatcacaatcacggtcttccttagctga
tgtaggctgtaaatcattgatcgcctgtttgccggaaagcctttagagcaaaaatatacaacaaaaatgagtgtgttcatttctttaagaaagtaatttg
caggtccatacctgagtgtcacctccaaaaaaacagaaatagaaacaaatctggtgagagactagctatctgtatattaatgttgcttAAGAAAATTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAA
GAAAATTAAAatttggcctctgttgtagattttagttacttatttctatttccacctctcccaacctatgaaatagtcaagacccacgcatagttccgta
acaaatcatggcagccaatacactggcatagtctgagaataatttgtcttcacaaattgtatgtcctacaggctgagctgaaaatccaattaattgctga
cataatttttaatacctgaactggaacaaacctgataatctaaaacaaggtagaaaaatatagagtctcctcttcttcatttatttctggttcaaagact
aatctctgtcactcaaaaatggcagcctgggttcttcagcacggaaatcacttaagaaggcctcagtgcgggccaggtgcggtggctcacgcctgtaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 472 162 NA intergenic
906 chr7 42200191 42200477 RIP_Alu_chr7_042_03 0 + Yc1NBC01 AGTACGTGAGGTTTCTATGCCTTG GATTTGTCCATAATAGCCCCTAACT SINE Alu Yc1 tgttttattaagatataatttacatgacataaaattcaccatctaaaggcacacaattcagcgttgagtagatttaccgagttgtacaaccattactgct
gtctaattacagaacattttctccataactcacttaaaaaagaaagcaacagaaatgtattttctcacagttctgcaggtcaaaagtctgaaatcaaggt
gttggcaggatgatgcttcctttgcaggttttagggagggacccttccttgccccttcccagtttccagcggccactagcgatccttggcctgccttggc
ctggggctgccagagactgtggctccctccagtctctggctctgttgccacatggccttctctctgtgtgtctctctctgagtctTCACATGGCCTTCTT
TTTTTTTTGAGATGGAATCTCTCTCTGTCGCCAGGCTGGGGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCT
TGCCTCAGCCTCCCAAGTAGCTGGCACTACAACTGCATGTCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGCTTTCACCATGTTGGCCAG
GAAGGTCTCAATCTTTTGACCTCATGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATACAGGTGTAAGCCACTGTGCCCGGCCTCACAAAGCCTTCT
Tctaaggatgccagtcattggatttagggcccaccctaatctagtatgacctcatcttaccttaactaattacacctgcaaagacccttattccaaatag
gtacgcattctgaggttctggttgggcatgaactttggggtacactattcagcccagtatagacacatgagggggattcactttctgttcatgtgattcc
cttttcagtacccattttgtacatgtaggtttgagagggtccaatgcagtatggtgctgtttgctgcctaagtcatgaattatttgagaaattagacaaa
aatattagctgatggaagtcaaaatatcatctctttttactgatagtgtaacttgaagaatgtagcttatatctggaaccaagtga UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 481 159 NA intergenic
907 chr7 42322954 42323262 RIP_Alu_chr7_042_04 0 + pAlu7-42256394|Yc1NBC1 AGTACGTGAGGTTTCTATGCCTTG GATTTGTCCATAATAGCCCCTAACT SINE Alu Yc1 caaaggaaaaccataaggaaatactcctttgcatccatgaaatggctaaaataaaaaagactgatatgcaaaatgcggtaagattatggagcaacaggca
gtttcatacattgctgtggggagtgtgaagtggtacagtcactttggaaagttgtttggctattcttataaagttaaacatacatctacatgagaagcag
caatcccactcctaagtatttaccaaagataagtgaaaacatatgtccacaatagacatttacatgaatgtttatgtaagatttgtccataatagcccct
aactggaaacaatgcaaatgtgtctcagtagaaaaatggataaacaatttgtggtttattcttacagtggaatactattgagcaatAAAGAGGAATGAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAGGAATGAGCtactgatatatgcaaggcatagaaacctcacgtactgcggactgaaagaggcttgtgcttacacaagacatataatgt
acaattccattaaggccaattaaggtcaaacataggcaaaactaacccagcaggatagacactgagagctagggctgcctgtgggaagtgaggagccctg
gcaaggacatgaggaaaccttctgaggtagtgggaatgtgcgacatcttgtttgtggtgatggatacaaaagttgacacattcatcaaagctcgccacat
cattcacttgatatctgcatatttcactcaaagtaagttttatttatttatttatatttattcatttatttatttttaagatacagggtctccctctgtc
acccaggc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Genome comparison|Candidate screening NA 60 481 159 NA intergenic
908 chr7 42377877 42378205 RIP_Alu_chr7_042_02 0 - Yb8AC931|pAlu7-42311324 TCCATTCGAAAAGCCTACTGAT GTCTACCTGAAGCAAAAGTAAATCC SINE Alu Yb8 caatttcagaatgaaaagctgtatgtgaatggccaagaggctgagcaggtctttggcaaatacaatgaggtagaaagacaaaagttgcagtttagagacc
aggaaagaaagaccctggtaaaaatgccagcttttcacttactatcctaaaggctacatcttagaagtaatggtaaaatggaaagaagagtcctcacaag
gactgaaaccaaatttgagtcttctaagtttctaatagattaatataatgtgactctagtttagttgtctacctgaagcaaaagtaaatcctattattct
taatggaacatcatataacaccttaaaactccattctattttctacaacacaatgtctatacacaaacaaaaataatcaggcatacAAGAAGATAATAAT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCAGAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGATAATAATtaatcaaagcacagcagaaaaacatacaatagaaataaatcagtaggaaatttgattt
tgataaatgatatttgatttatcagacatgaacatttaaataactatgcacatatactgtgtgaaatggtaaactgaatatactcattgcccaaaattga
taaatagattgaaaaacataccaatcaaaatatcagtaggcttttcgaatggaaattcataaaatacataaaatatgtatggaaatgcaaaggatctagt
atagtcaaaataattttgaaaaagaaaaaatattggagtatttatactacataaacagaatagagtatggaaatatacctatactttgtggccacactta
tttgacaatgtgccaaagaaactcaata UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 687 346 NA intergenic
908 chr7 42420900 42420901 RIP_Alu_chr7_042_01 0 - Ya5ACA1702|pAlu7-42354424 TCCCCCATCTCTTTTTCCTT TGGATAAAGCTGCAACACCA SINE Alu Ya5 tactttatctgtctcatgacttttaaaacgtgagctgttgattttcctacgtaacttgtgtgtgtgtggaaatctccttagatttacacaaaggtgaata
cttctaaagacaattatgactttcctctgccagttgacaactcgtctaggattatttaaactaaattccattctcagttttttgggccatccaaatacta
tggaattgaggcagcaaacaaacacgagatctaacctataaatacagtttctcagagtctattttcccctttcactcagtgccaggatttgaaaacttgc
aattctcccccatctctttttcctttttcccattttcttgtaggaggatggggagagtttatttctagttcatacttatgcttAAGATAAAGACTTTTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAGACTTTTGGtgttgcagctttatccagggaggtctcctgttagacactgtcacttaaagggagctgt
gctttattttctgacctctacaccttacaggctcataacagcttaaattgttaagttctgaaaatattctcaaggtaaaaatactgaacgaaattctatg
tttgcctctctatgttctcatcttcccttagattttggcctgagcaaacattactttcttgctagctcaccaaatcaatcattcagcaaatatttgtgaa
gcccctacaatcttccaactactattctatgtgttgggaacacagcagtgtaaaaaacagacaataatccctactctcaaggaatttatctcagaacggt
tgagtggtggttttcataatatttt Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 55 454 112 NA intergenic
914 chr7 43187360 43187653 RIP_Alu_chr7_043_01 0 + Ya5NBC182 GAAGGACTATGTAGTTGCAGAAGC AACCCAGTGGAAACAGAAGATG SINE Alu Ya5 gtttcattctttgcattgaaataagttatcactcatttcatataaaaagtattctggggttcaaataaaaagaaacactacgaaaattcatagaggttgg
ctccttttgaaataaattcaatgtaaagaaattctagaaaattacacctgttctctacatgattcaagagaacattgtatctttgaaacttcctgagaga
gcaaagaatggtaagaaggacagtaaggagataatgggtccaaccttttgaccaacagtcacaggtatgtgacttagagaccacgggaaaaggaattact
gaattagaagacaaactaaaacaaaatcatccccaacccagtggaaacagaagatgaaaatagaactttttaaaacccagaaatctaatttatgaacAAC
AGATGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA
AAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATGGCTTGAACCCGGGAGGCGGAGCTTGCAGTGAGC
CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATAGAGAAATATAATAACcagt
gaaaaaaagatgaaaatattttttatctaaaaaaatacatacctaattaaaattgaaattcttcatatttcagatagctggaattgatataataaaatat
atatgtaggttcatagtagaaaatttgtagacacataaataagaaaaaacaataataatccaatacacagcaagcttctgcaactacatagtccttctta
ccattcattgctctaataaagttttaaaaataaaatgttcttttgaatcatgttaagaacattgtgaaatttcctaaaatttccttcagtttcttgcatt
gaatttactccaaaaggagccaaggggttcctggaggaagaatttttgaactgaagaatgctataaacaaacaggagaaactgtcggacgcct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 563 287 NA intron
926 chr7 44735648 44735958 RIP_Alu_chr7_044_01 0 - Yb8NBC418 TGGCCGTCAAAGACATAGTG TACGGGAATAAGGGCAAGG SINE Alu Yb8 gagccacattataataaaagtaaaaagtgttgaaagcaggccccccaaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagc
actgtaacatgttcataatggccctaatgcccatgctggaaggttgtgggtttacgggaataagggcaaggaacacctggcccgcccagggcggaaaact
gcttaaaggcattcttaagccacaaacaatagcatgagcgatctgtgccttaaggacatgctgctgttgcagttaactagcccaacctattcctttaatt
tggcccatcccttcgtttcccataagggatacttttagttaatttaatatctatagaaacaatgctaatgactggtttgctgttAATAAATATGTGGGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAATAAATATGTGGGTAaatctctgttcggggctctcagctctgaaggctgtgagacccctgatttcccactttacacctctatatttctg
tgtgtgtgtctttaattcctctagcaccactaggttagggtctccccgacccagctggtctcggtaaaaaagaaacaggtgaaattgattgtaatcatat
tttatttaaaatggttgatctaaaacattataatttcaatgtatcatcaatatgaaaatgatcgatactacattttacattgtgtgcactatgtctttga
cggccagtgtactctttacacttactgtacttctccagtggactcgctgcacttcaagtgctcagagcacgtgtgggtgccagagtggacagcatagagc
ttcggaggcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 854 528 NA intergenic
932 chr7 45549067 45549371 RIP_Alu_chr7_045_01 0 - pAlu7-45482912 NA NA SINE Alu Ya5 tcttgccgtttatttatgacagaacacacgcaggacttgaaagatgttactaataatgtccactacgagaactatggaatcagaaaactggcagctgtga
cttatcatggagttgataacaagaagaataaagggcagctcactaagtaagtatatatttttttctccaaaaaaaggtattctttctgtagtcagtaatc
atattgtttcattttcattaaatttctcctggctactcagtagaaaatttggataacattctctatgcataacagcataaatttatattgttatgctttg
ttaatagtagaagcttttttgaatgaaccattttgataagagttttcacttacagattgtgtggaaacaaaggacaggctttAAGAAAAGGAATATTTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAGAAAAGGAATATTTAGatgaatttattcttggttaccttctctattcctattccagggagtaaattagctggagtttcagtttcttcttttggt
tgttagactggtgtaagtgactacgaagtgtgtagctttgccctattgagcttatatctcaagctgtggtggtttcatgttggagtcaaaaaaagagatg
tgtgaggaagctggtaaccatgtctgtgccctacttttaaaaaatttgtcattattgaagatcacaattacatcatatgtcacttagcaatggggataca
ttctgggaaatgtgtcattgggctatttcatcattctgtaaacatgattgagtgtacctacataaacctagatggtagagccttctgcacacctaggtta
tgtg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
935 chr7 45875418 45875419 RIP_Alu_chr7_045_02 0 - pAlu7-45808944 NA NA SINE Alu Ya5 atacataacttttacaatacaatggaacaactgcacatcaatttggcactttcaaatgcgaaaataagaaaataaacatttaggtagatgagtggccagt
tatcagaatcaaagatacatgaatgttcatgcatgctacattgaaacttcattgactcttggtttaataagaattcatgggaactattctggagaaaaac
tattgtctttacttgagaaaagattagaaacttttgaagtagaacttgaagcagatgttgttgtgtggtaagcagtgtctaagatagcttccagtgatcc
ccttcctttgagggtgggccagatttggtgacctgctttaaaccaatggcccatgtgatgagtggtcactcccaaaaagaggttatAAAAAAACAGACTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAACCAGACTTtcagttttgggttgtctttcttgctctctcttggatcactagctctggggaagccagctgccatgctgtgagggaatcctgtgcaaag
gcaccatgtgggtgaccctagaagcgcatcttctgaggctgccaacaagtacatgagtgagcttggaagcaggtcctctcccagttgagccttaagatgc
ctcccctcccacccagccaacaacttgactgcagccccttgacagacttgagccagaaccacttagaacacagaaactgtgagataattaaatttttttt
taactgttaggttttggagtaatttgttacacagtcatagcttactaacactgattaccagcacaatcacagacaaattcagaaagttatcactgatg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
948 chr7 47605899 47605900 RIP_Alu_chr7_047_01 0 + Ya5-MLS14 GGCCAGAGCATATCTTATCAGC CAGTCATATGTAATCACGGTACTGTAC SINE Alu Ya5 gactctcttctgtccttgcctcccctgtgttgttggatgttttttccagaagggggagttgtaggctgtcggacaaaccattaatcttcatcagaagttc
gtctaacagatttgcaaattcatccaagtagtaattctgaagggaagaaaattagattagtaaatgcattcaagaatctcattatccccctttcctcatt
atgtgaagcatttaggggtatcatctgtagacagtattgggctatgttaggaaacatactgactctgcctgcagttagaagacctgggtgctgggcctac
tcttacatctctatatctcagttgcttcaataataatgtacgtatacagatatacatgtaaatgctacagttaataatgcctacatAAAAAAAACTATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCTCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AGAAAAAAAAAAAAAAAAAAACAAAACAAAAAAAAAACTATTGaatggatttaaaggcagtaatgcatcatgctgctatgggaaaataaggtcattcttt
catcccttcgattaataaatctttattgagcactattaaaaaaataaggcaataatggatggggaagcacatgacagagaataaagccctatcaaaatgt
acagtaccgtgattacatatgactgccttcagaaccttactggatgatgcttaaatatcacctgatatggtttggttgtgtccccattcaaatctcaact
tgaattgtatctcccagaattcctgtgttgtgggagggacctggggggaggtaattgaatcatgggggctggtctttcccgtgctattcttgtgatagtg
aataagatctcatgagatctgatggctta Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
948 chr7 47668431 47668737 RIP_Alu_chr7_047_02 0 + pAlu7-47601872 NA NA SINE Alu Ya5 ccttagccattgcctgttgatgggtcttctgctggagcaggtatagaggttgaggcccacaactccaccaatcttggggaacaaagaccatctcagagca
aatgacagcaagcaatggacttaagtgagaaaagcagcaaaccaaagtatcgtggtgctgctattacacttacataaaattatatgcctgatattagaag
ctagcatacaaaaataaaccagttttactagtcaggatggcaggattggagtgaatattatgcttcatttgcatcattcttattaaaattaataatttct
aaagtattttgaagtattttttattttaaaagctaatgcaaaagaaatatctgctcattgtagataatcaggaaggtatAGAAAAGTATATGCAAGAGTG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTATAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAAGTATATGCAAGAGTGaagaatagctattctatagtcccattgctcatagaaatcatatttcaggatgttgagtatcaaattttgctat
gtaatagagtacatatttggcagacaatttagttgtctatatgtatatctatatatttttttgacacagagtcttgctctgtcgcccaggctggagtgca
gtggtgtgatctcagctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacgtgccacca
cactcggctaatttttgtatttttagtagagacgggtgtttcaccatgttggtcaggttggtctggaactcctgaccttaggtgatccactcgcctcggc
ctccca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
961 chr7 49329336 49329644 RIP_Alu_chr7_049_01 0 - 52662 NA NA SINE Alu Ya5 ccttaggaagtgtaggaaagaaaacacaaaattttgaggaagcaattgatgaaacatatgtgtcttgatcatttcttccttcactaaagtctgcttgggt
gttagagaccactgcacaagttacctctgaaccaaatcatggagggcaaatttttcagcaagagcggaggaatgggctttgatagcagaacctaagattc
atcatgatgtttatatctaaacttcctacaggccccaagccgtcatacggatggcggttgatcatctgccgaaagagccctatatccatgtacctatggt
agacaggattctatgataggacccctagcgagtcatgcctctgcatagtaccctgcccatgagtgtggatggagcctgaaatttgcttttAGACAGTAGA
GGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAA
ACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAGACAGTAGAaggtggtaaaggtgatgagatagttactctcatgattatgttacattactaagactccatcttagcagattatagtgagggg
ttctcctgctggccttgaagaaataaggctccctgttttcagagtgcttataagaactaatgttgcaaggacctgagggcatcctatgaaagctgaaagt
agtccttagacaacagcaataaatggaggcttcagtcctactgtcacagggaactgaattttgtcaacaccatgtaagcttggaaggaaatccagagcta
cagaaggagcacagcctgaaccaccctttgaattcttgtgagatcctgagcttagaactcagttaagctgtgctcataattgtgacccacagaaactaca
tatgttgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
977 chr7 51466118 51466427 RIP_Alu_chr7_051_01 0 + 13499 NA NA SINE Alu Yb9 gttttctttaaaaaaaattcactgaaaagatactgaagagctccccaaactgagtagagttgaatgactcggccacacgaaggaaagacccttggcagcc
tggccaagcaatcacaaacaacctccactgaccttctgtgcctctccttccctggcttccaccagcatctactgggcaccaaccacatgccaggcataac
cgtgggatccaggctgccgatagggaactgtaaaatgccccgtcttcagagaggacaaatgccaggagatgggaagagctaagatggaggatgatcaggt
gagagtggagaggttacagcctcagcatgtggtctcctggaatggccaggaaggcttctctgatgaagtttaaactgagacctgatAAGAGTGAGGAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAGAGTGAGGAGCTacaggagcagctgggaaaggagtgtccaggcctccagcaggactgaggttggcttgtatgtgtataagtatatacat
aagtgtgtgtgtgtataagtaaatatagatatatatttaaattccatatgtgtgtatatgtatgtgtgtaaacatacatatatatttaatataatatata
atataaatatatatatatatttagagagagagaagagaggactgtacatacccagtttttccttgatatctctggggaattggttccagggccctcaagg
gtaccaaacactggtgctcacatcccatattgctaatagagtagtatttacatataacctacattgtttaggaaatgatggcaataaaaaacatgtatgt
atttagtac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
980 chr7 51869182 51869484 RIP_Alu_chr7_051_02 0 + Yc1NBC51|6760 TCATACAAAAGACAGGCTTTGC CAAGGGAACAGATTCAGAAGAAACA SINE Alu Yc1 tcatcatcacattgcataagagataaatttatgtggttcccacttatcaatttcagtattcttaatgaattagtagacaaggtcgtctgctgatgaatga
aagccaagtgttgggtacaaggagaataatgaagttttgaaatggctgtaaaaaccaaaataaattctagcaggaatgggtaaatgaactgcagcataac
aatgaggtcacaacattcaattaagaacatattcaacattcaattaacattcaattaagagcatatagtgatacaaaccatatctttcaggttgatttga
ttctatacttttcatacaaaagacaggctttgcttttcttctgtatcagaaactcattctacaatatttgacaaattgtcttgaagactAAAAAATGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAATTACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATGACAgaaaatttacttcaatatgtaaaaaaatggttaagtagttcttattttaaaaatccatatattgaggcaaaatacttgttttgttat
ttctgtctgtttcttctgaatctgttcccttgaactttatcactgaagatttttctatcagcctttttcaataaacagatcctgttgactcatgaacctg
tctcatcacctccgtggggcgggtagagccagctaaagttcagatatatgctttgtccatggaggaacaaatatattttgtctgtgcagtggctctttct
cttctgaaaagtatctaaactcagagtttattgccctaagtatccaaacatgcttattattcagtttctcatcttgttcaatttgtttaatggatagaac
at UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 55 521 208 NA intergenic
986 chr7 52577074 52577365 RIP_Alu_chr7_052_01 0 - Yc1RG197 TGCCTTTGTAACTTCACATTCG GTGGTGAATGGTTTGCACTTTA SINE Alu Yc1 ttcagcttctgcatcttcagggaggagttttctgaccacttaattgaaaacagaacctcctaaataaccccttcattatttctattgcaaaactctgttc
atttccttctccacggggatcactggcttgtaaaggtttcttttcttgcttgttgtcttgttcattgtctgtcccgtccaatgtcacttaagctccacaa
cggtgtggactgatgatatctgtcttcttacttgcatccatccccaaaatctagcatcgtgcgaaagagacaggaattgctcaaggaatacttgtggaat
aaacatgtatgtttgcttttgtttgaataagttacatgcatttgccattgtaaactaaactggtgtggtgaatggtttgcactttatttaagAAAAATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATGAa
ttaggctattcgaatgtgaagttacaaaggcaattacctttttctgctacaagaaaaattccttcatccttctcttatatatgattgaaaatatattagt
aaagccttcttcgcttttccttgcccaatatgaaggaaaagtctcataactgaattctaagcaaatttttgcatatccttcaatttggaagtttctctcg
tacatagaattgtaaactgaattgggtttgttttgtattcttagactgtaaataaggccagaaaataataaataagtaaataatgaggtggaaagaaaca
cacaagtaaaaggaaaatatgtgaggataggtgtctggcatgaaaaatcctgaattttgtaaaggataagtgagaatagagggcatttctc UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 56 368 69 NA intergenic
1021 chr7 57175563 57175874 RIP_Alu_chr7_057_01 0 + Yb8NBC620 TCACTTTCCCCAAGTCAAGG CTCATAGACTAAATTTGCCATCCTG SINE Alu Yb8 tgaggcaggaggatcacttgagcctggtggggtggaggttgtagtgagccaagaatgcaccactgcactccagcctgggtagtgggagagaaatcatgtc
tcaaaaaaaaatatatagaatcactttccccaagtcaaggcctcgttttctttgagggagttgtaaaaagttttaaccaaatttttcaattattttatta
ttattttttgagatggattattcctgtgtcacccaggctggagttcacccaggctggagtgcagtggcacaatcccggctcactacaacttccacctccc
agattcaagccattctcctgcctcatcctcctgagtagctgggattagaggcacccagcaccacgcccggctaatttttgtatttttAATAGAGATTGGG
GCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAATAGAGATTGGGtttcgccatgttggccaggctggtctcgaccgcctgacctcaggtgatccacctgacttggccaccgaaagtgttg
ggattacaggtgtgagccaccacaccctacctcagatttatatatcaggatggcaaatttagtctatgagtttatcatttatttcatcctcagatttaaa
ctgttgaacccaaaatgtagagatgaatctctaaattcaactgttttatttggcaagaaggacttgtcatttggggcatacacacagaccaggtggcctt
caatatgtccaaagaacaaactggagattggaggttttgtgtgtgtttgtttgtttgttttgtttttttgctttgttttgttttgttttgatggagtctc
actctgtcgcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 750 426 NA intergenic
1024 chr7 57597106 57597406 RIP_Alu_chr7_057_02 0 - pAlu7-57526665 NA NA SINE Alu Yb7 ggcagatatagacttctcagggacacctgggcactgcccctgcctttacacatttgtcaggtatattggctcatgggttcattctctttatcagagaaag
attacaggtttctcgtatagacaccaaaagatcaggtgatatattattgaaagttcactgcctattatagtctgagtaatataaaaaaataatggcatat
ggatggtctgaaggcaatattagtttcttctactaggtagggaaggaggtgtctttctctttttgtgaatttgggcctttgttgtaaattgggagttgac
atatttctgaaacataagggaaaaccacatccaaccagaacctaaccttttaatccatccaagagtttacttaattcacccaattAAAATATGGATTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAATATGGATTCTCtgcaatacctgttcataatctctttagtccatattttctccattatgtccaactcccaccattcagctgttgatttatggtgaga
gctatttttaagattgtagaattaattactgaaaataactctacagactcataaaattcatattcacctctgcattccagtgatcagaaaaaatatgggg
cgtatttccaaatataactccttcactgtctcttttcaaagggcataacagagtgacagaattgaaggaagagggcagataatttaaaaatattatatag
gggggcacctcttgaaaaggaagcctaatatcctacaggaaggctctggccctaggttttcatctgtaaatcatagttactctaactcttgtagttacta
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1073 chr7 64080972 64081269 RIP_Alu_chr7_064_02 0 - pAlu7-64545854 NA NA SINE Alu Ya4 tgaagatatgtcggccaggcatgtcacgcctgtaatcccagcactttgagaggccaaggcaggaggatcacttgagcccaggagttcaacaccagcctgg
gcaacatagtgagaccccatctctataaaaaaagttaattaaaaataaataaataatatgtcacagattccccatgggtacagagcagagaaaaggaatc
tactatactatattttaaaaaagactgatcctcagcatctgcacatgtataattgggtccagacttagctacctattaggtttgtacttagtactaaaga
cacaaagatgaacaaaagcaagactatcccccaggcttacaaataagaacagttaattgcattacagagtgatgactgttgccatgGAAAAGCACAGGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGG
TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCGCCCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
AAGCACAGGGAatgtaagaaaatgcatatgaagaaatatagcccaatcaatgggatcagaggtggctttctgtaatacgtgatccctaaaaacaataact
aaaagagctgctaagccaaaagaaagaaaaaggcctttctagaagaaaagctgcatgcacaaagtcccaaaaaggagagagaagatggataaattagaag
actagaagtatgtgaggcactacactagagtgaacagccagcgaaataaggctccatttcattcccagcaatgcacccctaaaacccaaattttcccaga
attgtataaatgtgataaaattagaaagctgtcatacctgatacctggttatggtatactcactttttaaacttaagttaatttgattacatcttaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1074 chr7 64097278 64097581 RIP_Alu_chr7_064_01 0 + pAlu7-64051017 NA NA SINE Alu Yb7 ctgatactctagtaatccactaaaaagttgagggtgtcctgggctcccctgggagtgccgtgggcttgggctggacaggtcgtggggagaatgctgggta
ggtgggtgcagctgcagccacaggggagccagagtgtgcagcatgtgtccagcgtgagcctcccgagcttccacctgggtcacatagtctttgtgcccct
gggaagcctctagaagccacacagaggcccatagcaactctcatgccctggagtgtctcaccagccactccagtgatgggccctccagtggctctgggac
ccaaacagggatgattcacaaagtccctaccgagcacaggccttcacagttcaacaagaaaatcctactgttgactggatttttAAAAATCAGTGGAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAATCAGTGGAGGAGgatcacactagaaatgatagatactgcaagaaacaaagcttgagtgaaagcttgttaccgtaatgaatggactcacacat
atcactgctttgcagtgatagcatcagccaaaagggctgcgaacatgaatcattaacaagttgaaatatgtcaaagatggctgtgtggtgtgaagaagct
gcatcagctgcacaggctaagcctaaatgatattccaaatggcagagtgtccacctgaataccatcactgtaatcagtaacaataaaagatagggaaaac
tgaattatttttaaggttgaaatgattttagcatgacagtttgttctcttgccaccgtacattgaatcatatacttgatgtttattgtgtgcctgtgatg
tgcc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1103 chr7 67906734 67907040 RIP_Alu_chr7_067_01 0 + pAlu7-67860298|Ya5ACA1684 AGGACAGGAAACAAATCCCC CTCCAGGGTGTTCCCATAGA SINE Alu Ya5 aaaacaaacaaacaaacatgtaacccagaatcttttccccaatctttgccccaaattagtgcagaggagggtctgtagtacaaggctcagccacgtgagg
gattgttacaaggagacaggggggttctgatgttagggagactggcctagacaatcacattcttgtggaagaacaaggacaaggttgtctgccagtgtgg
gatgagcccgggtggatcacgatggactcagagctgctgatgtttaactgaagaaaagggagatggaggccaaacaaaacaaagggggctttctccaaga
agtgccaaccttctctgtaacactgccccaatgatcccacaaagacttatataggaggacaggaaacaaatccccacggtaaccgatAAAAAGAAACCCA
GGCCGGGCGCGGTGGCTCACGCCTCTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAACCCAaagccatcacttaccgggggaaatggcttccaatgctggttccttaaagaatgaacaagaacatccttgaatcctgtagcc
agctatctatgggaacaccctggagggcatgatgagaagaagaacccttatgagcctcatgccctagctggagaggagagaaatgcactcaccaacaaag
tgaatttacaattgcagacacactctgttacaggccaaataattgtgagctcctttctttttctttccttttcttttttttttttttttttttttttttg
agatggagtcccctgttgtccagtctggagcacagcggcatgatctcagctcactgcaacctctgcctcctgggttctgcctcaagctattctgcctcag
cctccc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 55 470 151 NA intergenic
1119 chr7 70011728 70012039 RIP_Alu_chr7_070_01 0 + Yb8AC1384 CCAAGCAAGAAGACTGGGAG TGTGATTTCATCCTCCACCA SINE Alu Yb8 actgcactcaagcctgggagacagagtgagactctgtctcagaaaaaaaaaaaaaaggatactatattaccactaaactatgttcattccaggaatgcaa
ggatagttgaaggttcaaagttgaccaatgcagttatcccaacagcttctgttggattaatgacaacatctctgctgcctggctcagtgtgtgcccacac
agctggctaactagttacctgtcttccccaggtggttttttcacagcctgatggattcttcttgcccactgcctcccaccacaaaaacaatgagaacacc
aggtattgcagcaattaaagagtttaataattgcagtgccagccaagcaagaagactgggagaaattttcttaaatccatctcctcAAGAATTTGGAGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAGAATTTGGAGGCtagggttttataagggcactttggcaggcagggggctgggacactgaaacaactgattggtggaggatgaaatca
cagggtgtctaacatcgtctttacacaattgagtcagttgccaggaggacacctcaggaccaggtggcttcgcttggtctgctgaaatgctaaatctgaa
aaataactgtaaagaccagttcaataggtttcacagtagtgatgttatctacggaagtacttggggaagttataaatcttttttttttttgagagagaga
gtcttgctctgtcacccaggctggagtgtggtggcacaatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctccca
agtagctggga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 460 135 NA intergenic
1130 chr7 71528995 71529300 RIP_Alu_chr7_071_01 0 + pAlu7-71482659 NA NA SINE Alu Yb7 ttgctgacgtcacagcccgaatttccaccacatttcatactaactccccctaaatttgcatatgcaaaccacgagcaaggatgatcaaacagacaactgc
gcatgtccgaggactttccagatctcccctttccttccaccaatcacttactaatctgagaatccatcccctaataaaatcactgccttaaaacctgcac
aggaagacaaatttgagctggacttagtgtctctttattagtcgacttgcaataaaaaagctttcttttcccccctcaaaaaccctatgtcaattagtat
tggcttccagagcatcaggcagtgagccccttttgctcagtaacagagcttaaggtgaataaaaaaggaaaataatgatatggttcAAGAAATCATTACG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAAATCATTACGaaagcatggctgaaaaactgctagccttaccaagtgcataaaaaacatgaaaattatttattgataagcattagtcataaa
agtgtactctatctcaatttaaatactgcttatgtgtggattacacaaacaaccatgtatgcagtagctacttcaaaggactttctttttaatatttaaa
aagttagttcactgaatcagagttgttagataagatcttgtcttcgtgagaacagcttttgaaaatattttaatattttattactcagcaaaaatagcca
tgaaacactgaggggagatttagtttgggaatggaatgagagaatgcctgctgcggttcattatcatgactccacccattccttacaactctatgatgct
ttatg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1165 chr7 76120866 76121184 RIP_Alu_chr7_076_02 0 - pAlu7-76074821 NA NA SINE Alu Ya5 cagaaacattaaaagtgaacttcgcaatttccttaaaaaatagttgagactgtggagaaacaaaaattagttggaacttagtgaactgaagaactgaact
tcagtgaactgaagaaacaaattccactctgggtagatcgacttcctaatgtcacaagtcaatttagaaattatgtacaagataaatctcttttctctca
ttgcaccaatgtatttatcttaatcacaagcatcagtggagacagagactgaaaaataaattgttcactgtctccaagacaaaccccaaataggaaactt
gatattctgccgaaagtctatctctggaatatgctttggaaaagccatggtataattatatgtagtattatagagattcttgtgtgtatAAATATTTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATATTTTCAaaagcctttgaaattgtttgtaaatccaaagtttataaatgacttatgaaatccacaaatttgctaaatat
gtttctgcatttttgtattatgctctctgatttttctttctatgtggtgtaagtcaaagaaaatgatatacaatatggctagatgggactaaaatctcca
aacaaaagaagcatctgtttttctaatttagtttttgaatttatgttggtttcacaattggttacactgcaaacaatgtggttcaaatgacaatgacact
gattacaattctactttgcactaagagtgctttttattcaagattgtcaactcccataactaacaataactaagcctttcagcacctctgtaccttgggt
attgttttacccaatgtg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1166 chr7 76211875 76211876 RIP_Alu_chr7_076_01 0 + Ya5ACA1693 CTCAAAGCTCAGAGGAGGGA ATCCTACTCTGCTCCAGCCA SINE Alu Ya5 tcaccaggaagtcttcctgtgtttaccctaaacataattcagagaccaattactcctcaccgcctccatggctatcactttcgtcagacttgctacattt
tagcaatcgtcttataactgttttcctattcccacccttgcctccttccattctattgcccacaaagaaacataagtgatccttttgaaacataagtcag
atcacggcatttctttcccaaaaagaaatgcaagtgtctaaattcttcgcctacctcagggtaaaagtccaagttcttatatggcctttaaagacctctg
tgtactctcctcctccctccattagttctctgatcttcccttcttcttttcttcctcatcctactctgctccagccacgcagtctttcTGGCTATTTCTT
NNNNNNNNNNTGGCTATTTCTTgaacatagtaaacatgatccctcctctgagctttgagttgtttcctttgcctgggaaattccatctggagacttccgg
gcttgctcacctatataggcaagtctgtacatgagacctgctctgaccactcaatttaaaatggcagcaaaatccttcctggcaccccacctttaaaatg
gcaacaaaagccttcctggcacctttcctttctagctttggacctattacataatctatgtatcttttgtgttatcatctgccttccccgccagtatgta
aactccacaaaggttgagatttttgtttggttcactgatgtatcccaaggacacagttcagtatctaacttgcagtggaaactcaccaagtatttatcaa
attatttgat Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 396 80 NA intergenic
1177 chr7 77604303 77604611 RIP_Alu_chr7_077_01 0 + pAlu7-77557801 NA NA SINE Alu Ye5 tatgaagtctaaaatgatttaaagaagcaagaggtgtctttaaatgttcaatgcagaatcattttgtctccaggatccaaagggtgaacatcctaagagt
tcataagatcttttcatgtatccattacttctagaatattatagctttaatttattgggagatagtcttatggagattcataatggctaccatttccgag
agattccatgtgccatgacctaagtattttatatataataacacatctggtgagatgtttggttaaactagactaagaaaagctttaaataattctgtaa
ggacaacataatcatagaagactctatgatgattacagcaaatcttctgcctccatagtaatccatgtcagactagtgctgcatAGAAAGATTCCTTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAGATTCCTTCACttatttaatcaacaagttgaatattttccatatacctggttatgaactaagccttggggatttattaacgatcaag
tcagacacaggttttgatctcaatgaacttattatagtcaggttggggaggcaggggctggcaaataagaatttccaattcagctgagggaggatcagat
aaaaataagcatctttcataaaaagcagattgtttcctgatgaaccaaaggctcagttcagagagacagagtagtacgaactgaacgaatctgacattgt
ctataagagtgcatatggtgcgtatacacgtgcatgtgtgtacacacatacacacaccatagaacacacacacaccacagaatactatgcagccataaaa
aatgatga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1180 chr7 78002512 78002831 RIP_Alu_chr7_078_01 0 - Ya5NBC96|55662|Ya5_451 GCCATCAAACACTCTTGACCT GGAGCTATGCCACAGAAAGG SINE Alu Ya5 tcttaactttaaaatgactgggagtaatcctcactttttttcttgttcttaacttgtatcccagtggtttggatattggcactaaaccaatgtgccttca
aattcagacattcctatttttaatcacaagatcttgagtgagtaaaatatctaacacattgtaaagacttaagtcatatgatcattatcatagatatagc
ctaataccattacaagtggctgatatccacatgattacaaaactctgcatctatagtatgccctcatttcttaccccttttcagtgagcagaagcctaag
aactagttgtaccctgtgagaaaatattaggagctatgccacagaaaggaagagtaagatgaatcattttttcagatatAAAAAGATCAGAGAAAGATGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAGGCGGAGCTTGCACTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGATCAGAGAAAGATGGacataccaattttgaaatctttaattcaaactttgatggtactaggtcaagagtgtttga
tggctctatctcatctatgtgaatagaattcccagctagaatttgagttccatagagtaagaaccaatgtgcattttgtttactgctaattcatgcgggt
atagcatatgatagatcattttttaaaaagctttttaatgaaagggtgaatacctgatgacaaattcttaaaattgggctgtttatataataatctataa
tctaaaataaagatccttcttatttttctacgatttactttgtatttaatatctcagttatcatcacccactgttaccataacctcgcagggaatgaaca
tccttaatgcagattattc UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening|Trace comparison NA 60 509 169 NA intron
1190 chr7 79386741 79387059 RIP_Alu_chr7_079_01 0 - 21331 NA NA SINE Alu Yb8 agcattattgttaatgtggcatggccaattgatacgatagatttcttagctgcaacattgtgtttaccataatcctgactccaccaaaatttgtattcat
aatttcactgtaaaaatgaacctttaaaaactgtgtcttaatgtatctaaatgtaccttaaatgttgaacttttaaactgattttacattgatgtaatgt
tgtaaatgacagatgctcaccttctctaaaattttttattgatttgattttgattccatgaattgggtgggaaaatattctgaagcattattggattcaa
ctaacaaaatttcttatttgaagcatataattacacttatataaaactggcattggagctattttcttcacttttcatatgtgcatAAAAATTGGGATTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAATTGGGATTGaaaataaattatttagaagaacactcatttgttttaaatgaaaactcatgcttttcaaaatggaatgt
agcagctgcaggtattaaattgttgtctttggaaacattcttaaaataatgattgactttttttttttttttttttttgggaccgagtctcgctctgtta
cccaggctggagtgcagtggcacaatctcggctcactgcaagctctgcctccagggatcatgccattctcctgcctcagcctcccgagtagctgggacta
caggcgccctccaccaggctcggctaattatcttgtatttttagtagagacagggtttcaccgtgtgagccaggatgatctcgatctcctgacctcgtga
tccgcccgcttcagcctc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1198 chr7 80446350 80446676 RIP_Alu_chr7_080_02 0 + pAlu7-80399849|Yb9NBC29|Yb8NBC207 GTAATATGAGGTGATGGGGGTTACT GGTGAAAGAAGAACCCCTAAGTTAT SINE Alu Yb8 aagtctggtaaaatcaacagaggcactcagaatgtctccaaaatcatttccatgatgccagaaactttaaatgctacagaaacaagctacagcgatacat
ttaaatgttcttctttgtagggcttgagctgtatctaaacttaagttagagctcaaccaacatagaatctagttcagtaatattctacaacgtgagataa
ccatattgatatttgatctaaaatgagattgcagaggaaacacattttaatacctgaggtgtgtgcttaatcttcttgatgtacattaaaagctcagtat
gtgagagtaatatgaggtgatgggggttactcttaaagagattactaataatgtttatttggaaaaagatgaagattttagaggctatttAAGAAACTGG
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACTGGttctgggaaaaccagccataacttaggggttcttctttcacccaatcccattggaattctgctt
tgctatagaaacatgctcaaaccaaggcaagcagcacacattacatgaacaaacaacacaacaatgaaaagcagatccttgagaccctcccaagaagacc
aagagctctctctttaaaactttgtaaaatacctaggttctctagtcttcctgtgtgttatttcctaaccaattgcactatcaattcaaaaatggaacaa
aggatattctatgtatcagaaccttttttcctatacattaagaagaacttttcccacatgaataggtaatcacaatcttaagccagaggatgaaacctat
gaattccttgtatcatatatatttta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening|Genome comparison NA 60 474 138 NA promoter
1200 chr7 80647505 80647801 RIP_Alu_chr7_080_01 0 + Ya5NBC194 TATTCTTATGCCGTTATGTCCTCAG CCATGGAATACTACTCAGCTATGAA SINE Alu Ya5 agaaaataaatattctctttacataggtattttaagaaggcaataagataagtgtacttggatactgggatgcacaggtttgtttgtttttttttccaat
ctttttttttttttaatttcaataggttttggaaaacaggtggtgtttggttacatgaataagttttttagtagtgatttctgagattttggtgtaccta
tcacccgagcagtgtacactgtacccaatgttagtcttttaaccctcacccacctaccaccttttccctcgagtccccaaagttgattgtattattctta
tgccgttatgtcctcagagcttagctcccacttataggagctaacatatagtgtttggttttctattgctgagttacttcacttAGAATAATGGGCTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCAGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
TAATGGGCTCCAattccatctaggttgctgtgaatgccattatttcattccttttcatagctgagtagtattccatggtagtagtattccatatatatat
atggaatatatatatgtggaatatatatatatatatatatatatatatatatatggatacacacacacacacatgcacacacacacacatatacactgca
ttttctttatccacttgttggttgatgggcatttgggctggttctatatttcaacaaatgcgaattgtgctgctataaacatgtatatgcaagtgtcttt
tatatataatgactttttttttcctctgggtagacacccaggagtgggattgctggatcaaatggtaaatctacttttagttctttaaagaatctc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 486 169 NA intergenic
1215 chr7 82591128 82591431 RIP_Alu_chr7_082_02 0 + pAlu7-82544626|Yb8NBC5 AAGGTCTAAGCGCAGTGGAA TGTATGCAGGTTGCTTGCTC SINE Alu Yg6 ccaaacaagtgatacaataactatgagattattattcttcctttcaggaaaaaaaaaaagaagcaatggcacgtaaacaaacttctccaatatgttaatc
tgagaaggagaaatgagaatctgggttggggaacaagtttgtctaaattcaaagcccaaatcagttctactaataaatagtgggattgagcattctaata
aaggatactcccgtgttccatcctggagattaatgcaagataaggcaggagaataaagcagatagcaatcatatttcatgtttgctattgataaaagcta
ataggaaatcttataagtatgtggctgtagtatggatttcaagactggaccccaagaagagtgtgtcatcccgtctatctgctagAAGATCTGAACAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCTCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAGAAAAAAAAAAAAAAAAAA
AAAAAGATCTGAACAACCatggccatccctctgaaagaccagtacctgtttctgcaacatttggagagaaaagcagaacagaataaaaattttctgcagg
aaatcagatccttaggagaatgggagggaagctatcggtgctaaggtaagtgcaaccagctcttgatcccagttttaccaatcagttaaataacttctta
atcagagatttattgaccaggcttgacctccccagagtaaagctacagtaagacagtaaactcactgtatgcaggttgcttgctccaagtctatcgcttc
tgcaaaaatatcttccttctgatcagtctacagagcccccagggtttttttttaatgtgttttgtacagagttcttaattgcagattgttttattagaat
ccc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening|Genome comparison NA 60 503 167 NA intergenic
1215 chr7 82591486 82591794 RIP_Alu_chr7_082_01 0 - pAlu7-82545393|Yb8NBC5 AAGGTCTAAGCGCAGTGGAA TGTATGCAGGTTGCTTGCTC SINE Alu Yb8 atatttgattctaaatctagaaacatgaagagaaaatgagtagaatcttgctattatatataataaagcatatgttggaaatatagaaataaagggatta
atgtaatggattagtttgttagggagaattatgtgtatacagtatatacactatatatgtatatatatatgaatatatgtatacatacatgcactgtcac
atgtacataaaatgaatttataaaaagctgaattttccagctaatggaaaatataggaaaattaggaatttaaatgttagaaacaaatagatcacttctt
gataacatagggaaaatcacttctagatgatcataaggtctaagcgcagtggaatagaggcatgggattctaataaaacaatctgcaattAAGAACTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTCTGtacaaaacacattaaaaaaaaaccctgggggctctgtagactgatcagaaggaagatatttttg
cagaagcgataaacttggagcaagcaacctgcatacagtgagtttactgtcttactgtagctttactctggggaggtcaagcctggtcaataaatctctg
attaagaagttatttaactgattggtaaaactgggatcaagagctggttgcacttaccttagcaccgatagcttccctcccattctcctaaggatctgat
ttcctgcagaaaatttttattctgttctgcttttctctccaaatgttgcagaaacaggtactggtctttcagagggatggccatggttgttcagatcttc
tagcagatagacgggatgacacactc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening|Genome comparison NA 60 503 167 NA intergenic
1220 chr7 83354529 83354838 RIP_Alu_chr7_083_01 0 - pAlu7-83308024|Ya5NBC210 GAGGGGGTAGGGATAGCATT GTGTTAATATTGTCCCCACATGTAA SINE Alu Ya5 atagtgcctagacagctagaaaacataaatttgcccaatttttcttgcctatcatgcccccatcagtccattcttcaggttgggtcattcttctaaatat
ggatctatatctaggtctagctacatagataataaacatatattacatatatatgcaatgatctcatatatatatatgaatcatgtgcattctttcttca
acttatttaaacctcttgcattgttttaatttgaacaaatgtaacacaaattatgttggaatctatgtcataggttatagtaattaattatttttactat
tttcatatttttgtatgtgttaatattgtccccacatgtaaactttaaaagttcttaatcacagagattaaagtatattttttAAAGAATTATAAGCTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAATTATAAGCTGCaaattataaactgagtaagatattaatcaaaattgcaactactcaaaataatttataataaagatttagtatgt
tttctccaaatgaaaatataatttggaatgataaatgtccaataaatatgaatggtaattttaagcctacggtataattttttatttttttttaggtagt
ctctttttttcttgttattattatactttaagttttagggcacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctg
cacccattaactcatcattcagcattagggatatctcctaatgctatccctaccccctccccccaccccacaacagtccccagagtgtgatgttcccctt
ccgtgtcca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 62 750 424 NA intron
1221 chr7 83373024 83373338 RIP_Alu_chr7_083_02 0 - Yc1NBC53 AAAGCTATCAACCATGCCAACA GAAAATGCTATTTTGGGGAATG SINE Alu Yc1 cgtaaaattacaattctcaaatgaaaacatcaagatatctaaataatagccagatctcataagccattagatgaaatataactgaggtgatgacactgtt
taaactcctcattaaaaaaagcgtttatgattcttttgtgaattagtcaaacttgttttatagcatattgtggttcatgcacatttaattttaactcctg
agcttacaaatcagctgcgttaagctgcatttatgttgtgcataaaacattaagctactataggcaaagttatgtgagttttgcattgatagcatatcac
aaaggagagtttctccattactcgtaaataaagaaaatgctattttggggaatgtatatgtgaaagtaattcaaatgcacttttcttttaaaaaaAATTC
AAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC
GGTGAAACACCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAA
AAAAAAGAAAATGTAATTCctgattaatctctggttattctatccaatttatcttctgctataactattgtccacgattgttgttattacttttattact
attagaggctattattgttggcatggttgatagctttatcaaaattatataatttgattttaataattctgtgaaagaagcattatctctgtttctcaat
tgaggaaactaaggctcagggaagttcaacatgttacataacatcacacagccagtatatcatctgtcctcatgcccatcataacaaatggcctttctaa
tggcatcaatattataccccattgagattatgctatatgatgtgcttattaatacttagttctaaacactcaaaactttgaatttcaagttaaatccatt
acaatttgcattat UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 62 505 186 NA intron
1221 chr7 83395608 83395905 RIP_Alu_chr7_083_03 0 - Ya5NBC7 TGATGGATATTTGGGTTGGTTC GGACTGTAAACTAGTTCAACCATTGTG SINE Alu Ya5 tgatgatgagcattttttcatgtttctgttggctacataaacgtcttcttttgagaagtgtctgttcatatccttcgcccactttttgatggggttgttt
gacttttttcttgtaaatttgttttagttctttgtagattctggatattagccctttgtcagatgggtaggtgtggagaaataggaacagttttacactg
ttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcaaggatctagaactagaaataccatttgacccagccatctcatta
ctgggtatatacccaaaggattataaatcatgctgctataaagacacatgcaaatgtatgtttattgaggcactattcacaatatcAAAGACTTGGAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GACTTGGAACCaacccaaatatccatcaatgatagactggattaagaaaatgtggcacatatacaccgtggaatactatgcagccaaaaaaaggatgagt
tcatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcaaactatcgcaaggacagaaaaccaaacactgcatgttctcactcatagg
tgggaattgaacaatgagaacacttggacacagggtggggaaacatcacacactggggcctgtcgtggggtggggggagtggggagggataacattagga
gatatacctaattgtaaatgaccagttaatggtgcagcacagcaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatataccc UCSC - Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
Selective database search followed by genotyping NA 60 522 216 NA intron
1243 chr7 86361954 86362256 RIP_Alu_chr7_086_01 0 + Ya5NBC22 TCTGTGTTCTTTGAATGTGTATTACTCTTA GAATGTAAAGCTGTAACTTTCCTTTTCAAT SINE Alu Ya5 atatctcttcaggaacctgatttcaattcttttggataaatacccagatctaggaatcttagatgatatggtagttccatttttaattatggggggaatc
tccatactgttttgcatagcatcatagcacctacaccagtttgcatttgcactaaccatgtgcaagcgttccagtttctccatatcctcctcaacacctg
ttatcttttgtgagattttttaaaataatgaccatactaatgggtatgaggcaatatctccttgtggttttgatttgcatttctctggtgattagtggca
ttaatattttttcatatatgtgttgttcatttgtctgtgttctttgaatgtgtattactcttaaatctgacaaattaatagacctttAAAAATTAAGGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATTAAGGTCttccttcactaattttttttagtgcaggaatggtttttataacatagtgaatgttaacaattgaaaaggaaagttacagctttac
attcaaaaaaagaacttctttttttgctttcatgatttttagttgacacataataattgtacatatttttaggtacagtgtgatattttgatacatgtgt
ataacgcataatgatcaaatcagggtagttagcatatccatcactttaaacatttatcacttatttatgttgggaacattcaaaatctactcttctagct
atttgaaaatatacaataaattgtttataattatagccaatctattgtgcttcctcctatctagctggacttttgtatctgttaatcgacctttggctac
tc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 471 156 NA intron
1244 chr7 86481280 86481574 RIP_Alu_chr7_086_02 0 + 7627 NA NA SINE Alu Yi6 atcttaccacttagggcctggcctatcaataggaacataatgtgcctcactgctgcagggcaggcatgcaatggcaccacagaagctgtggcctgatcct
gcagaccaacaggtcacggtctgccagccacaaaggtgcaacaccctaacagatacctcccaggctaggctctgttgttcccaaagaaatatcaatggta
aacaatggggatctctgaggtccacgttttcctgagtagaagcccagttactttctgctagggcaggaccaaggactgatttataaggcatcacagctct
gaactccagctgacaaatcaatccttcggcaatgctccccaacactcccagagaggggcaaggcaaaacagagaaaagtctttgcAGAAAAGCAAAAGCC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGTTCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAAA
GCAAAAGCCtggatggacaatgccatgaagacattccctactacattcttgagggagaaggcagggtagagggtggaggaagattgagaactccattttt
ggtgttacttctaaactttctatgtgattctacaaaagtctttctcctcagacagcatcgcagggagtcctatagacccacatcccttaccaggtgctca
atccgatttccaggttagacctcacaccttcaagtgtcctcctctgtcagacatcctacccctgggaagctgttccacatgagcaaactgcatcctaaca
gagctcatgcccctgtgtactcagccagagctcatgagacttatttaccaccacgagaacagtatgggggaaaccaaccccatgattcaatcat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1265 chr7 89243535 89243839 RIP_Alu_chr7_089_01 0 - pAlu7-89197006|8375 NA NA SINE Alu Ya4 ccaatttgcgtaatttttgcttgaggtgtctcttagtctgggtgcaggcatagagaaaataagagtttgtgaattgatcctgtactggcatttagttaag
aaaaactgatggaagaaaaacaaaagatgttttacagacactggcaagagagtggttgatatgggggaccacggagtctagggaaaatagaacaggaagt
gaaggctgaagattagagaggctccctttgaaaggattaaggactagtggtctcagaaaggtaaaagaataaatgctgtggacatagctatatgagagat
tctggaggaaagagtttgtgtgtggagaaatgaatgttttgattcaggaagtctatggtgggtcagtattgagtgagtgaaccagattAAGAATAAGGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAATAAGGTCcaggatgtggctgttggagttaagatgaagtttatgtcactggaactgaagatgttaagaaatgaagttactaaagtgattgac
taagaaatcctttccttgttagatccaccgagaatgatggcaatgcttgagacatagaggaagactgagatcttaagtctcaaatttttattgtataaga
gaaagttgccaggcagttaaaggatgcacagaattggagagaaaaatgatggtataatacaaagtgaaacaagtgacagcctggggtcaaaaactggatc
accagtgtcttttatttggcccgcactgtgttttaaaagttagattaaatgaccataatgaaaatatgtgagtttgcacacacacacacacacacacaca
caca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1273 chr7 90228596 90228890 RIP_Alu_chr7_090_01 0 - 15088 NA NA SINE Alu Ya5 agaaacttaaagaatccttaaattgtgaaacttctcagttttcttaattgttctaatgcgtattgtgaatctgcaagaggagagtataatactttcccca
aagaattgtcctaaaatttcttgtggtttcagtgttctgtcaaatactcactaggaaatgcttattgcagaagctcttttgaaaaaacatctaaataaat
aactataaaggaatagtcaaatctggtacatacattgatgagattatatatgataaattaaaatgtcctctaagaatttttttaaactgggaagatgtta
agtgaaaaggtatacgcaatttgacctcataaccataaatactcatgcacagaaaaaatatttgtaggtctgtttttttttccctctAAAAAAAAAAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAACCGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAGaaaaaagtttggcagaaaatacatttaaatgtcttcagtggttacctctggaatatgggattatctttattttttagtaagtttttctgagtg
ttttcccaagatttgtggaatgaatgtgcaattattttaaaaatcacaaaatctatagatgtcattttttaaaagaaaaaaacctgtgtgacagctttct
atctagctgtattcattagtgacaagtataaagtattatttactgttatgtttatagcacttaaaacatttttacagtgaacctaccataacatattcat
tttaatgttctatttaaaaatttttatgtagtaaggaaatggctttttcttatttattaaatgtagcattccattttcagtattatatgtaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1299 chr7 93602994 93603295 RIP_Alu_chr7_093_01 0 + Ya5NBC212 CATTTGGCGCAAGTGGTATT ATCCCAAAGAAACCCACGA SINE Alu Ya5 gataaagggagagctggcacatcagatggcaaaatcaggagcaaggtggggggtaggtgccgcatacttttaaaccaccagatctctcgagaactcactc
actatcacaagaatggcaccaagcagatggtgctaaaccattcatgagaaatccaccctcatgatccaaccacctcccaccaggcccctcctacaatact
ggagattacaattctacatgagatctgggcagggacaaatatacaaactttatcgattactatacataaagtagataagtcaagtgtgcaagtctggagt
acagaagaaagtctaggccagacatgcaaatttgggaattgtccatatacatttggcgcaagtggtatttgaatcccttttcttaggctAAAGAAATACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAATACAaaagcaacatgcaatacatgaattatatttaactgtacttcaatgtccacttaagaaaatagttaacaaaaatatcatgaaataataa
atcaaaccttattaaattttaggttcactttgtcgtgggtttctttgggattgtaaatgttagtaaatatttttttttctggatgaaaataacaatcagt
ctacaagatatcatagagttccctccttattctttaaacaatttctttgtgaatatacattagattggcttttactattatagtcattgtatcaaagatg
accccattctgaattcttacatgaaatgatgttttaatttgacaactaattacagttttcttcacatctcatgatctcagaaaatcaagagacccagtct
g UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening NA 60 502 190 NA intergenic
1310 chr7 95030919 95031235 RIP_Alu_chr7_095_01 0 - 79717 CAAGTTAAACTTCCCCTCGCACC CATCTCTCTCTCCCCCTCCACTC SINE Alu Ya4 ttttactaaaattttcttaccatatggactaaaagtcatagaagattaaatatcacaggctgtttaaaactgatgtcttttatcactttgatcttcttaa
tattcatcattttcaagttaaacttcccctcgcacctataaaaggctcatgttgatggagataaattgctgaactgttcaaatattttcttaacattcta
acttgtcaaatataaataaggtcatagagaatcatgttaaatcgggtgaattatcatcaagagtctaaaagtctttttttctttacagtaaaagaactat
aaataaaaatacatttgtgtattttgagaaaaatcatttctgaaacatttcaggtcaacaaattagtagaatccaagtttcgttcAACAAATCCAATGAG
CAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
AAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACA
AAAAAAAACAAAAAAAAACAAATCCAATGAGtatattttatattttatttctatgatagagtggagggggagagagagatggagagagagagagagagag
agagagagagaaagtgtcctgggaagaagttccaaataaacagaaaacaaacagaaaagggacaggtagtcaggaaactctaaaattagcataaatactg
atgaagcacctactatatgccagacaacagagatacagctttctagtactgctaagctcttcctggtgtattagagaccattatcgttatttcatggctg
atacagaggaaagctgaggctcagagaggttaagtgacttgctcaaaattgcacagattgtaataagtaaagccagaacctaactcagatgtttgataaa
agagctcaaatgcttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
1315 chr7 95712172 95712478 RIP_Alu_chr7_095_02 0 + Yb8NBC69 CTTTCCCAAGGCCTCTGTC GCCACACACCTAAAGCCATC SINE Alu Yb8 aacaaacattattttaaaattcacatggaaccagaaaagaacccgaatagccaatgaaatcctaagtgaaaagaacaaagctgtaggcatcacataatat
gacttcaaactatactgtaagactacagtaacaaaaacagaatgttactggtacaaaaatagacacatagaccaatggaacagaatttaaaaacccagaa
ataaagccacacacctaaagccatctgatctttggcaaagtcaacaagaataagcaatagggaaaggactccctattcaataaatggtgctgggatagct
ggctagccatatggagaagaatgaaactgggcccctgcctttcaccatatacaagatggattacagatttaaatgcaagacctcaaactatAAGAATTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAATTCCagaagaaaacctaggaaacataattctggacagaggccttgggaaagaaattatgagtaagtcttcaaaagcaattgcaataaaa
taaaaattgataagtaggacctaattaaactaaagagcttctgcacagcaaaagaaactatcaacagtcaacagacaacctacagaatggcagaaaatat
gagcaaagtatatattcaacaaaggcctaatattcagactctataaggagcttaaacaattcaacaaacaaaaactacataaccccattaaaaactgggc
aaaagacatgtacaggtactttttcaaaagaagacatacaagcagccaacaaacatgaaaatgctcataatcactaatcatcagagaaatgcaaatcaaa
accaca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 55 557 242 NA intergenic
1318 chr7 96167407 96167722 RIP_Alu_chr7_096_02 0 - pAlu7-96120589|238362 NA NA SINE Alu Ya5 gatgcttatatgattatatttgtaaaaagttgcattttctgccctaaataagcttgacaattatatgtcacaatgtctgctttgtactctttttactctg
ggtgatttagtgggagacctagaggcaggatggggtagtggagagctcaaggggtttagaggttgagtcagagcttagctccaaccccagctgtatggtc
tggggtcatttattttcattatttatgtattccttcacatctagggagcaatgggctctgaatatgtactggaattagagattgacaccctacccataca
gagcttttaggcggagagtcccctatctgagttctgtgggtaggataagggggtggaggagatcagggaatgctccccagaaggtgtAAAGACTAGCGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGACTAGCGCCagaggctcatgtaggagttagccagtggaagggcgggggtgttgtggaaagagtgcagtagacagagataat
gccatatgtgaagacccagaggcgctggatctgcaaagactcattccagtggtctttcagcctcatatatatttgttttgagacaaagaaagatgtaggg
ttttgtctagaactagaatctttaaagacaaacttcagagatgagattaccaatggtatctgttatagttatcagtgggtctcattcaaattttctcttt
ttagcccaaagggttcctggtaatgtacaaggtggaaacctaaggctttatttcgagtaagaaggaggaacttcttaggttacatcagcactcttgaagc
tactgaggttgcaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1321 chr7 96539398 96539624 RIP_Alu_chr7_096_01 0 + Ya5ACA1727|Ya5NBC201 CGCCACTTTCCCCAGTTA CACCTCCCTAAAAAGCAGGA SINE Alu Ya5 ttgtgaaaaaatatttgtaatatatatgatggaaaaagaggttagtagacataatttacaaaaagctgctgtaaatcaatatgagaaagataacccaatg
gagaagtgaacaagtgctatgaaaaagcaattaatcataagagaaaacccagaggttaataaacatgagatgtttcacctccctaaaaagcaggaaaatg
caaattaaagtaatatacatgtatcacttcttgttcatcacaatggcaaaaattaacaagaatgagaacctagttctggcatttctttattcatgcattc
ttctatttaacacatatttattaagtgccttacatgagccaggcatgattccaggtgttgaggatacagcagtgaacaagagacAAAAACCTCAGTCCTT
GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT
CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACCTCAGTCCTTatggagcttgcagttaactggggaaagtggcgaagaaggtactcatattgctaatgaa
aataggaagtgttatagccttttggaaaggaacttaatatttattaaaataaacacataatcagcttgaattctaacagtagacttgaagagatttccat
catgtatagctgagtgacaaaaagcaagactctggaatgtatatgattgattatcacatggaaaaaaaaaaaagcaatgacagtctcctccccaccacca
aagcataggtctacatttatatacatcattgatgttaaaaccaccatctaaggtgtgaaaacacatgcatgaaactgtttacattgatcaattgaggaga
agtggaatggggaagcaaaaatctca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 460 218 NA intergenic
1331 chr7 97842448 97842449 RIP_Alu_chr7_097_01 0 - pAlu7-97795382 NA NA SINE Alu Ya5 gcaaatatttcaaaaccttacactgcatcaagatgggacatttcttaaaaattgcttccccaggacaagaagtagtggcccacacctgtaatcccagcac
tttgggaggccaaggcaggaggattgcttgaagccaggggttcaagaccagcctgggcaacatagagagaccccatctctaaagaaacaaaaattagcca
agtgtggtgacacattacctgtaatcctagctactcaggaggctgaagtgggaggatcgcttgagcccaggagtttgaggctgcagtgattcctgatcat
gctactgcactccagcctgggcaacagagcaagaccctgtctcaaaaacaaaacaaacaaacaaaaagcttcctcagacaacatagaaacaGAAAAATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
GGAAACCCCGTCTCTACTTAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAGGCGGAAAAATAAGGgggcctctcactactcttttcagatgtatcttccagactgcggctcccattgtcaggggagtcattttgtttctgta
atgcatgtgtcatcttttacttctagatagcgttttggggtagggaaaggagttgggcagaaataaagatgtctaggcgccttttgttctgtgcagacac
atgcctgagaacttttcagtgccaaataaaaggagagtctttctggtcacaagaggagtctaataatttagttaagcctacaaagcaagttccttatccg
actgtcttttatgataattgctgcagtgtctggccctgatgggagagaaactacagcccagacccaatgtcctaatgacctggggatggcgggcttcaca
gagaaaaagacaaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1363 chr7 102082671 102082994 RIP_Alu_chr7_102_01 0 + 8120 NA NA SINE Alu Y attggttttagcctagaaatgtataatcacatagcatctctctatacacaatttgggtgtaataaatacatatacacattgacatatgtatatgatctaa
tatataccaaggtgtatacatatatttaatttacctacatatactagacatagatgtacctttacatatatttgcatgtaaacacacatatatgcacact
ttcactgcatacacacctgccagtccttctggtgcatcctaatgaaacctgattttctcctgctaatgacattagcacctggctgctaatgacatttctt
aatcaactacctcaacctgctaacactgaaataattagaaatttttgtctagctgcaagattttcatttagagataatctgcatAAAAAATACACATTCG
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCAAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATACACATTCGtgtgtacggatattatataaatgtatttatattatgcttcattctaggaaagaggaatcag
aaatgcaaaccagattaagagtataaaaagcaaccagaggccaggcacggcgcctcacacccataattccagcagtttgggaggccaaggcaggtgcatc
acctgaggtgaggtcaggagttcgagaccagtctggccaacatggtgaagtcgcatttctactaaaaatacaaaaaattagccaggcatgatggtgcatg
cctgtaatcccagctactcgggaggctgaggcaggggaatcacttgaacccaggatgcggaggttgcagtgagtcgagatcgtgccattgcactccagct
tgggcaacaagagcgaaactcca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1371 chr7 103057030 103057339 RIP_Alu_chr7_103_02 0 + 17827|pAlu7-103009708|Yb8AC1392 TCAAGCATTTTTCCACTCATGT ACCTGTTTTTCAGGTGGCAG SINE Alu Yb8 taaccttctaaattttttattagtctaaatagcattcaaaaaccataaatatctaatttaacaatagaaatattgttaaactctagcaagtttaaacctt
cataatatttagaagaggaatgtatgcaatgtcatttgaattagcaaagaaaaactaactgcaaatcaaaaattcaaattattgataaaattttgttaaa
ttaccaaattggtatttccagagcacctaagatactgtaatataaagctagctgtcaccagcacatgcctaaaggtagaaatggcagagtataaactcta
attctataacataatcttctggcatattcaagcatttttccactcatgtaagcatgtattcattcatctattcaacaaccaatgtttAAAGAATTACTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAATTACTTTgcctaaatattttcataatactacctgcaattgaaatactagaaatacgtactcagtattctgccacctgaaaaacag
gtttcaattttgtatgtttccttcagctttgtctacacgcaagttattttgttcttaggtaattgcccttttatccctaataattttttacttattttgt
ctgatattaatatagtaacagtagcttacctttggttagcacttgcctggtatgttttttccatctctgtactttcaatgtttttgtgccattatgttta
gttttatctcttagaaacagcatactgctgtatttttgtaattgcattctcaaagtcacagtgtttcgcctggtgaatttaatctgtttatatttattgt
aattgacaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Genome comparison|Trace comparison|Candidate screening NA 60 475 154 NA intron
1373 chr7 103316816 103317122 RIP_Alu_chr7_103_05 0 - Yb8NBC134 TGAGCAAAGGATTTGAATAGGC AGGGTTCCAGTTTCCCCATA SINE Alu Yb8 tcccttgttagctatattcctaggtattttattctttttgtagtaattgtaaataggagttcatttatgacttggctctctgcttgcctgttgttggtgt
ataggaatgctagtgatttttgcacattgattttgtgtcttgagactttgctaaagtttcttatcagcttaagaagcttttgggctgagatgatgggatt
ttctaggtataaaatcaaggcaacctcattttaaaatgagcaaaggatttgaataggctttctctaaagaaagtatataaacggtcaatgagtacatgaa
acaattctcagcttcattcatcattaggaaaatgcatgtcgaaaccataatgagatactactttacaccattatcatggcaataatAAAAAAGATATACG
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCATTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGATATACGataacatgtgttcatgaagatatggggaaactggaaccctttcttttttatgatttcatttgatttttatttatttttaa
aattatttccataggtttttagggaagaagtggtattagattatataagtaagttctttagttgttatttgtgagattttggtgtacccataacccgagc
agtgtacactgaacccagagaaattggaactgtcatacattgctggtgggtatgtgaaatgatgcagccatttgaaaaacccttggcacttcattaaaat
attaaacatggagttaccatatataccagaaatttcactcctagatatatgcatattcaagagagttgaaaacgtgtccacacaaaaagttgtacatgaa
tgttca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 526 206 NA intergenic
1374 chr7 103450400 103450703 RIP_Alu_chr7_103_01 0 - Ya5ACA1598 CCCAGCTGGTTTTTCTAAATG AATAGGCGAGAGGGAATGGT SINE Alu Ya5 cccacttgggtcatttcttatcccataaagataaaactaaatctataaacctgctccttatttttccatctggcttttcatctgtattccttatttttta
tttcactactggcaaaacctaaaatcacctatgtcagaaacctaaatgctagtctctatgactcctccctccatctcttacaaacagctactgagttcta
taaaatatacttccaaatttctctcagacttagcccattctcagtatggggtagtaaaaagattaagggctttaggattaaccagatctaagttcaagta
attacgaactataaacctttggataaattacctaacccagctggtttttctaaatgtgaaacaagaatggtatctctattataatATTGTTAAAATTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGATATCGAGACCATCCCGGCTAAAACGG
AGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTATAGTGGCGGGCGCCTGTAGACCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATTGTTAAAATTTAAatgggagtaatatatctatcacagtgtcagccacattatgtttaataaactttaattaccattccctctcgcctattcccat
tgtttataaaggccatttttttaaattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtg
tgctgcacccattaactcgtcatttagcatgaggtatatctcccaatgctatccctcccccctcccccaaccccacaacagtccccagagtgtgatgttc
ccctttctgtgtccatgtgttctcactgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgttcttgcgatagtttactgagaatga
tgg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 460 142 NA intergenic
1376 chr7 103723479 103723747 RIP_Alu_chr7_103_03 0 - 15419 NA NA SINE Alu Ya5a2 atcatccatgtacggttttcactgggccagttccctgtcctcacacttttcagtacctagagtggagtaacctttggttcattcccaccttcagactctg
gtttgatctcactcctggcaagggggatctgaaagggctgcaggtcagttctttggaccttgtgttccctttctggtagccagtacattaatttattaaa
taaatatttatggagacacactagatgatggggatgcaaaggaaagagggtattagagggtaggagctgaaatggaaagcataagtaagacttcattagg
ctctgtgctgagtaatgtacatcatctgcaagataatttgcaagacccagtgcaaaatgaaaatgcagagtcccttgttcaaaacttAAGATTTCAGCAC
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGATTTCAGCACagtgagagtagagcagcaa
gatttcaaggcagtgagaataaagcagtaaaccaagtgggggtcccttctgagcatgggacactgagtgactacacgggtcacatgcccatgaagccagc
cctggtcatgcaaccccggttctctttgcctgaaatcctagacttccaagaactcaaaacctgctttctcttgccactttctactcattctcagtggcaa
aatctgaatccttcttagtgccaacagactttgcctgctttgaactttgctgtgtgctctggattctcaacatgctgcgtccttgtggctgtgattcctt
gaccctgcattcacacctcaactacgcttgcagtctgttgctatccgtctagatgctctacactgtct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1376 chr7 103781352 103781666 RIP_Alu_chr7_103_04 0 + Yb8NBC201 GGAGAAAATGTAAGGTTTCTAGCAC ACCAATGCAACTATCTACACTGACA SINE Alu Yb8 tccctcattgtaatgtgagtgacagtgtttaattcattgtagtacaaattgttactattgctaatgttcttaatatagcacattaaattaaagagtcact
gtagctgtacaaaatcatatagagagctcaccactttcaattaattcggggatcctcccaaggctgcataactgagctgggagagttcttcctttgtcac
tggagacctgggttgaaatcctggagacctgggttcaaatggcttgctgtgagaaagttacatgaccttgaacattactctgagccagttttctcttctg
taaaatgagaataatcatctaagcctgttaatgggatttaggagaaaatgtaaggtttctagcacaaatgttaacaagctcttAAGAAATAGTAGCTCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAATAGTAGCTCAAaatatgtataatcaacaataattaatcatcctacttctaagtggaattaatgtattcatctgtcagtgt
agatagttgcattggttacttcaaaacactcgaggggtagagggtagttctttttcagtagagcagtatattccaggggttgaaatctgggcttgggacc
acgagaattatagagtatgagtaatcaatagtgatgtagtccagggtgatccttgaggttgcagtcaattaatataaaagcagttttaatataaaacttt
aatataaaagcagctttcgtgcatgtgtatcctatataagtcatggttgctgatgatggcagaggcagactgggttctccagctgtccagagagccatgt
ttctgtaccctatt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 476 145 NA intron
1380 chr7 104209165 104209485 RIP_Alu_chr7_104_01 0 + Yc2NBC5|Yc2NBC1 ACATAGTGGGCATTCAAGAG CTTAATGTTTCCATTTCTCCA SINE Alu Yc2 tagagttagggctgactgagttggggagtgggtggagtgtaaaatggcagcttgaccaggctgggccatagccactcatctgaccactttatctctcacc
tcttcccccactttggccttgggaaggaggcatcaaggagagtgtgaaggaccaaggaatgctagggatagttggtggccacttctcgacagtaaccctt
tacctaatgtatcccagctgatatttctcaaaacatgttgctatgcctcactcattaggttccactccatggggacagggagcatgtgtgtcttgttctc
aatacctgacacatagtgggcattcaagagtacttgaaggaatacagggaggaataattgattttcataactatcttagggattAGAAAAATCAAATGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAAATCAAATGTAactaatttccattttacagatggagaaatggaaacattaaggttttaagttgtttgggaggccg
aggcaggcggatcacaaggtcaggagatcaagactatcctggccaacatggtgaaacccccgtctctactacaaatacaaaaaaattagccaggaatggc
agcgtgcacctctagtcccagctactcgggaggctgaggcaggagaattgcttgaatccaggaggcggaggttgcagtgagctgagattgagccactgta
ctccagcctagtgacagagcgagactccgtctcaaaaaaaaaaaaaaaagattttgtgggggccagttgcagtggctcatacctgtaatcccaacacttt
gggaggctgaggcgagtaga UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 0 0 0 NA intron
1386 chr7 105060012 105060013 RIP_Alu_chr7_105_01 0 + 238047 NA NA SINE Alu Y aaaaatttacctttcatgtaggatgcccctggaagattagtcctagcaaaagagggagtaaattgagcaggacgaagacaggcttccagtcagtggactt
cccaagacaatgaagagggaagctgttgtcacagaccagcagcacagtaggctgaggggctaatgggctccagaaaatacaggggaattgatgggtttat
tcagtatgtctgaccagctgggccaaaaatagtgacaggatatacccaatctagtggccaaaattaaggataaacatataggtaagaatgcaagtaaaaa
ccatgaggcaataattttaggacaagcaaaaacctacatacgagaggaagtggaattgccaatattgcctaatattggtagacaaagacAAAAACATGCT
AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAACA
TGCTagacacaaggaaataaatactccttggctctgtaagtgaacagtatagatgcctctcactatccaaacacttagccttcatcttttagaagggaac
agatttggatacttttctggaatctgttcctcatcatttgaaattccactactcacatctgaaacccagaaaccaaataaatttggatgtacagtgtctc
tcattttctgagcttgttatctgacttagaaactggatagattcagatacttgatatttacaagcttgatgtaaccacataccttcactgagaatggaga
agccatagggaagggatggaggaaggaaagggggtggagatgtgtgacagccaaaccctccggtatgtgatggaaggttccgagatcctaaat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1403 chr7 107277944 107278077 RIP_Alu_chr7_107_03 0 - 33005 NA NA SINE Alu Y ataatgagaagagataataatcaccttgtaaaagattccttgcaaatgaatctatggtttatctagacttttatttagtttttagtgacagttttatttg
gtccagctaagtaattaaacatcaaagaacatgactttgttgagtatattgtcgagtattcttcattgtgtttttctcattccagatcgaaagtataagt
gaacaggcagaagtctccaaaaacaatgccttacagctgagggaaaaactgggaaatataagaaaccaaagtgactctgaagaagaaaacatcaatcttt
tcatcaaaaaagtgaaaaactttttgttaggtaatttaaaaatatatattaggactagtttttgtttttttccctttttaatgtatagtcAAACATCATA
CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCATAgccagttccaaattatattaattggaaatgacaagcctaaatcagaaaaatgatata
ccctttggtttttaattccttaatgagaataatctcaaaataccaactctgtgccaaaaaattacagctttctgtaaaagataaatgtggtaacaaatgc
tagaatttagttaaaattccaaacacatgaactttgtgtttaaagttattttatgttttttttaaggaaagttcaacatgacaattctatcagattccct
aacatcaggattcagtaattttctttgctgacagaaatgatatgagatcaagatatgctgaattttaattagatatcaaatatcatagggagttggcatc
taaaaaaaattattagctattattgactatttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1404 chr7 107360956 107361263 RIP_Alu_chr7_107_01 0 - Yb8NBC7 AGGTTCATCCATGTTGTAGG CTTAGAAGGGAATCCAGGAG SINE Alu Yb8 gggccttaaccccagatattgtggtgtaattggtatggaatgtgacccgggaagcaggattcaaaaaaaaaaaaaaaacacaaaaaaaaaaaccctggtg
attttaatgtgcagtaaagtttggaaagcactgggttatgcccttctcttagaagggaatccaggagcagagcaagtgtgaggggcaaattaatccgttt
taggtattggcaagccatcagtggttctcaaccctggctacatctcagaatcccctagggagtgttttatacacattgacacctgggtcccaccccagag
attctgccttaattagtttgaggtgggcctgagcactggtagtttaatatctcctcaggtgcatacaatggtatattattcagccttAAAAAAGAAAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGTCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAGAAAGAAattctgacacatcctacaacatggatgaacctttaggacattatgctacgtgaaataggccagtcacaaaaaagacaaat
attgtgcgattctacatatgttagatacttagagtagtcaaatccatagagacagaaagtagaacggtggctgccaggggctcggggagacatgaagact
tcttgtttaatggatacaaagtttcaactttgcaagatgaaaagtgttctggagatcggttgcacacaatgtaaatgtaattaacactactgaagtgtac
aggtaaaaatgattaagatggtcaattttatgtaggtgtatttctaccacaattaaaaataaatatttcaaaaaggaagtcattaaaaatatcttctcaa
gtgattc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 605 285 NA intron
1425 chr7 110136649 110136960 RIP_Alu_chr7_110_01 0 + Ya5539 GTTGTAGGTTGGGGATGGAC CCTTCAGATGTTCCCCATTG SINE Alu Ya5 ttcaaaatataataatgatattaacagcctactattaattatagaaaaaataataagtgacagtaaattaggttttgtgaaacaaacaaaaaacagtaat
taaacccagatacctaaaagcctgtacacttaactaatggtccatactcctttaaaaaaaaaagattaattctgattgggctgatcctgatctggaaaat
tagaaaaataaaatataaatatgtcatgaatgataaaatatatatatatatatatatatagtatcaagggttcatgttggaaaaaccctgagttctttgg
tttgtctgaaatgtggtttaatggaaaccaccaaacgtaggttgtaggttggggatggaccgtagagagactttaatatcaatctAAAGAGTACAGACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGAGTACAGACTCtattttgtaggcaatggggaacatctgaagggtgttaataaaaaaagtgacaagattatacttaattatccttc
tgaaactagcagcctgagggccaaatggactcagctgaacagccagcgactgatgaaagccattcttcaataaattcaatacaattaggttcccccagag
tggcacccttgcttgccacacacaccaggctaacactgattacggggcaatatttgagtatacgtggtatgtggctgtgtatttcttttgggtaaatttt
attgtggtaaaagcacttaccatgagatatactctctcaacagatttttaagtgtaggatacattattgttgagtataggtacaatgttatatgtcagat
ttctgaatttc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 417 89 NA intron
1445 chr7 112852422 112852741 RIP_Alu_chr7_112_01 0 + Ya5NBC204 AAGCAAATCAGTCCTACCATGA TATTTTGGAGAGTTGTAGGCAGGA SINE Alu Ya5 agaaggtttattcctagacaggtaggccccaaaagctcatttttagaaagttgtgaagtctcagatcctatgaagagaagatagcgggaggaaggaagaa
aaacaataacaaacaaaggaatgatcctagaaaattgatatagatcttacgtatgtaaataggttgctgttttttttttctttgtagtttaagttgtcta
gctttagttctcagggctgtaaaaaagaacagcttagttttcagtgatttcaaattaggaaaaaaatgagggggaaaggaaaagaaagaagaaaaaatga
aaatattattttggagagttgtaggcaggaaaaaatagaattcagcacaaattgtagaaaacaataaaaattgaaaagcattaggcAAGATTAGAATCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGATTAGAATCTAacaacaagtgtactatagttttgaaacataatttttctctgtcaagtttcccatttttattaaagac
aaatcatggtaggactgatttgctttattacacttggtcagattatttgtataaagtgcagaaaaaattattttttatataggctttttaaaattggctt
tgatggaattttattccatagaaggcatctcagataagacttttttaaagctgagctcagtcatggatttgtgccatcaaatacctatgagttgggtgaa
tttcctctactcttgaggttccaagatatacctggggctccgggacctgtcagaaagtgaccttctttacttaccacaggtcagaaaccctgtacaggga
ttctgtacatagaacatga UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 5199 186 NA intergenic
1451 chr7 113547469 113547764 RIP_Alu_chr7_113_01 0 + 238237|Ya5ACA1611 TTTTGGTAAAGATGCCACAGAA TCCTAAACATAATACGTACAGGTGA SINE Alu Ya5 ctgaacatcttcatggtgcaatcacatagagtccagaaattctctgaaaataaggaaagtttctagactcactacatgcatcattcagggaaataaaaat
atggggttacattctgtgtctgaaagtttccaagctaaaagacaccactatgaacataagtttatagaataacatagctttggctcttctgtgatgaatt
atttggctcagtggtaacaatttacacatgacttttaggacattaatctaaaagatacttccactgattatttggaacatctttctggagaagacagtct
ctaaaatggagaatttttggtaaagatgccacagaatataatcttacatttccattttactaaattgttaatctattaaaggtAAAACAAAAATATTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAC
AAAAATATTGTCattatttgaaattgtataattttgtataatgttaaaaataactacaagaaaggatatataattctaacacatatcacctgtacgtatt
atgtttaggataattataatccaacattttatcttgagtctagttgtaactgatcaatattttttcaaactgaaagtctggctccattagtggtttatac
attaatttagtggattgcaaccagcatatttaaaaatgtaatgtaatagaataaatagaacagaacagaaagcagaaccaaaaagaatagaaaagaacag
aataaaatggaaaatacatgctattatggattaatatcctgtgaaacttttatgtacgtgtatttgagttctcagtgctaattacatttttttct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Candidate screening NA 60 496 184 NA intergenic
1473 chr7 116435968 116436266 RIP_Alu_chr7_116_01 0 - pAlu7-116382616|912 NA NA SINE Alu Ya5 cagatggaaattagcaaagtcttaaaaagctcctgttagagtccaggtgatggggacaaaattgcggggtggaggaggagcttctccaggacttggcacc
tgactaaatgtgagagtgagggaaagaaccgaaggtgacaaatttttggcataagaaactagaataatgtgagctccttagctagggtaaagacaccaaa
ggaggaagaggcttagcaggggaaggtaacaaaaacagcttaaagaacctgcagaacatccctggagaaatggcctgaaggcagctgggtcttcaggtct
ggagcttaggagagaatctggagacacaaatgtgggtgttctgggccagagatggaagctgcgcagtaggagcacccgagatctctcAAGATAGCTTCGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCTTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGTCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
GATAGCTTCGAgcaaggagggagagggcagtgaatagagctccctggaaaacatgaacgcgtggcagcgcaggaaaggagtaggaggagagtgctgacat
acaggagtggcacagagagaaggtgtcatggagtcgagatggcctcaagacataagaagcaggctggctgggggcagtggctcacacctgtaatcccagc
actttgggaggccaaggcaggcaaatctcttcagcccaggagttcaagaccagcctgggcaacatggcaaaactaaggtggaggctgaggtgggaggatt
gcttgagcttgggaggtcgaggctgcagtgagccatgatagcaccactgcattccagcctgggtgacagagcaagaccctgtctcatggaaaaaaaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1484 chr7 117937766 117938106 RIP_Alu_chr7_117_01 0 - pAlu7-117884412|Ya5ACA1616 TGATTCCACCAGAATAGTGACA GGACTTCCCCTTACCAAAGC SINE Alu Ya5 tatttatataataatccataagtcttcagaaaagtagttgagaagaaccacatttcaatttgaccagttgcttctggatactggaatatgtggtaagact
aaacaattccaggggcatgagcctattgctgaacttcctttgctataaaaagagtcccttgattagaacaaattcagagtggaataccatgatggtggat
aaggcatttgtgagtgtatagatatggattttgacagaattatgggcaaggaaggcaaatctacccccagaatagttgtctatcctaaggggaatgaaac
tttgccttctgtacaattgaaagcattcaatgaaatgaacatatcattaaatatttagttgattccaccagaatagtgacatattGAAAGTGCAGTCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGAACGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTGGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAACAAAAACAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTGCAGTCTGGaactctactattgttaaattaggcactcagctttagcagtagcag
aatgagctttggtaaggggaagtccacttagttgagtctacatataaccactatttctgccaaaatggccactttgttcatggggttgagtacacacaac
ataaaccagtgtctctggagaaagatgctggctgatatccataaaatatgtcattttttccacctgattgtccagccaatccattagaaactacccataa
atcaaagtatatccatacttctgatcattcccctttccaatgtatcactcaaggttctgtccactgggcagaactggctttactacaatactttagtact
cccgcttattgggttgtaaatgccagtgtctgaggtagaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 466 111 NA intergenic
1504 chr7 120475066 120475385 RIP_Alu_chr7_120_01 0 + pAlu7-120421716|Ya5ACA1622 CATGCTTGCCAGAACAGAAT GATGCTGGTTTTTGAATGGC SINE Alu Ya5 aaattgaagactcagaggcctcagttctgggcctgccctgtcattaacagcatgatcccacttctgttatttaactctttgggcctcagattgcctcttc
tgttaaaaaaaaaaaaaaagtgacggggaagggagggagaaaggacacactctaaggcctcttctgactccatccaacgtgatgctacacagccactcaa
tgtgaacctctgtgaaggaaagactaccatttatctaaggaggtttgcttgagaaatacatcaacaaagattaaactttaggctgtgtctatatcaaaga
tgtggaggaggttggttattaatgacaaaccatgcttgccagaacagaattagaattagaaagcaagatatattctgaatgAAAAAGAAATTATAAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAATTATAAAACAgaattggatggaaaaataagcacttttgaggaagataatctttattttgccattcaaaaacc
agcatctctcctaaattttctgttgtttcttttagcagtacggccattctctacaaccagaaactttagaaacatctttcacatagcagaccctcgtttt
ctccaagatatgcagtcagttcttctggctcactcctgtcaggcccatctcttcactgtacctaaagtaccactccttccaggtcttcaaatcttatctg
tccctaaaggcctgttcacatattatctgcttcatggacccttccagaaaactctgacctccatgactctttctctatttggaacaattgtggctcactg
agagtagaggtgggaaaat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Candidate screening NA 60 476 158 NA intron
1532 chr7 124186976 124186977 RIP_Alu_chr7_124_01 0 + 8196 NA NA SINE Alu Yb8 gtggacagagttctttccttccctgtgcatccgcttcatttgcgctcagagtaacattgcgagggagagttcctagatcactgaagccagacataatcag
acagaaatttctggcacaatctaccagcaattttttttccccactatctcctgaggccagctctgatgtcagaacatacatccgcatccaggcaagcaga
aataataaaaaatatgagaagctagcaaaataaaatcaccaaaatgtgaggaaaatatggtttattaacagaagtcatcaatttgacaagaagttaatcc
cagtattttagaaaataaacagaagactcttagatgaatataattagtatcttcagagtgagccaaaatattacaaaaatattagaaataAAAGGGACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTACGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAGGGACTTagaatgttaaacaagtataaactaatgctgtgtaaaaatttatgtcaataaaattaaaggctaaatgaaatagataattttcta
ggaaaatataaattacctgtattggctctagagtaatagaaaataggaattaatgagaatagacacagtggaaaagacagtaaaagacctactctttaaa
aaatggaaccatgcagacatgcagttttaagctggaggaagaacaaaatctgcctactcctaacaaagaaaatgagaaatagaaatgggaattttatctt
agatgatattagcagcaataatttcagactttataaaggataccaagtccattaaatattggaccaatttgatagagaagacagaaagagatcatcaccc
actaca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1537 chr7 124859061 124859377 RIP_Alu_chr7_124_02 0 - pAlu7-124805708|Yb8NBC241 GGACTGTGTCTAAGGGTGTCCT GGTAATTGGGAGCAGTTGAGA SINE Alu Yb8 tttttcactgattacttgattcccttaagtctaattttaatgatggcccttcagatatctggacacttgagtacccatttagtcaatatagcctccctca
ctacttaataaaagttacgctatgcatagatggccttcagcaaaatggtcatgcattgggcattctgatttctagtttattatgtcactaatagtctttt
atattgatcataatactctgacatcccttcattattttgtaattgttttgctgttgaggtgctgaaggtttgaatttctcatatcaaaacatcatgtata
aaaatagtaatggaaggtaagagtgaaataggtaattgggagcagttgagataaaatattgtggggaaaccctaaggaatttgacAAGAAAGTCAAGTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAACAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAGTCAAGTTAaaggacacccttagacacagtccaatgagataaattggtagcacctgtattgcgtttgtgagcgagtaa
ccaaaggaaatgatttatataaaattgttacaggaaaatggctctctaataatcacgttcaccttaaaataactccctgactactcgtctaagtttctca
aatttcaccactgactcaaatttttttttcttctagaattattagttaaataaaaggtaacatcagcttttagtagtgtgtgatttaatgtgattaattg
agagtaagaatattaataaaacatttcaacttatttcctgatatgcacacaataaaatatgattatgatgtggacattaactttggatgacttaacttgt
attaaaagaataaaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Genome comparison|Candidate screening NA 60 424 93 NA intergenic
1555 chr7 127214116 127214423 RIP_Alu_chr7_127_01 0 - Ya5NBC354|239207 GTAGCTTGGCCTGTGCTCTT CCTCTGGGCTGAGAAACTCTT SINE Alu Ya5 gatcttgcaagtctccacttccatgaggtattctggcacacacctggcagccaaatgtaaaagctacttacttgcataaatttagagtgactttttctag
accaagctgttttatttgaacaaaatggttctgagatgtgtggagtgtacttctaaactattgccttttttgagctttcactcaaataaaattgctctga
gctcctcctcctgaggcaagtgaattccaaatgtctagagattagtatacttagcctacagtaggatgaggaggaaaaaccagctagtgtcaggaatatt
aagacttaagaaccaaagagcatgaataaaaaaaacctctgggctgagaaactcttagcaagagtccttcacctcactaactttactttAAAGAAAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAGAAAAAGAataaaataaaataaaataaagcaagcaaaaagggaaaggaattgtgaaaagtcaaggttctccaagagcacaggccaagcta
catatatcctatcctgagtagcttgaatcctgggccagctgtgggtcaagaatggcatttgccttattcatctatttattttttagttaccatactctaa
agcagggaacaacagacaacttcctgaagactaagtctgcccactgattttacagagctcatgagctaagaatgatttttacatttttgaatggttaaga
caaaaatcagaagaagaatatttgtgacatgttataggatataataaattcctcttcaaaggttttagcctgtaaattgttaagtacaatgagttctgag
gtccttt UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening|Trace comparison NA 65 466 148 NA intron
1556 chr7 127360379 127360679 RIP_Alu_chr7_127_03 0 - Yc1RG68|pAlu7-127306922 ATGGTGTCCACAAGAAACTGAG GGAAGGCTCCATTATAGGTCTTG SINE Alu Yc1 tggtctctcaaagtgttgcaatcatagttgtgagccactatgcctggccccaacttttaaattattacataatactcattttggataaacttccagttta
tacagaaaagagatgggaaagtcttaatctaattttctgataataggatcactgtgatcctgaaagtcgacatggacagcacaagagggaaaactacagc
cacttccacttatacacacaaatacagaattactaatcaatcaatgaccaagtagggttgttccagaagaatatgcaagaaaagagttgaataaatagaa
acgataccatgttcatggatgggaaggctccattataggtcttgtacattttttattaggttctttttcgagtttatattgctgttAAGATGCTGTGCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAGATGCTGTGCCCagtatatattgggtccaagaagataaaagccaaatactgacaaaagtagagaaaaaagaaagaagctcagtttcttgtggacacca
tggggtctctgcattagctctggtctgcatccctttggatttacctgttatgcaaaatttaaaatcctattatattaagtatctgtttgcctctgttact
aaaagctgatacaaagcccaataaaactttcaataagatttttcatgacacttgacacacaaattctgaaattcttactgaagaataacacaccgacatt
ccaggaagtgaaagagggaaattgggaaaaggaaggggcagtgcctatagcagaaaaactttcccagaaattcccccatagacttcttgctttttctagg
UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening|Genome comparison NA 0 0 0 NA intergenic
1560 chr7 127903177 127903480 RIP_Alu_chr7_127_02 0 - 238996 NA NA SINE Alu Ya5 cccagttggatgtatgaaaattggcacttctggctgggtgtggtggcttacacctttaatcccagtactttgggaggccaaggagggaggatcacgaggt
cacgagtttgaaaccagtctggccgatatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcatgcgcctgtattcccagct
actcaggaggctgtggcaaaagaaccatttgaacccgggaggcggaggttgcagtgagccaagattgtgccactgtactccagcctgggccacacagtga
atctctgtctaaaaaaaaaaaaagaaagaaagaaaaagaaaatcggcacttctttttccattccaggcatcagcgaggtaggtgtAAGAGCTGGTGTTCA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTGGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAGCTGGTGTTCAacagtgaccctattgtttttgtggtgggggcctttgcctagagcaaggtcagtgtggaatatacagagaaggatggtgtcta
gcagcaactacctcctttctgctgccctcatctgtgcaaaacttatcacagcctttgaagaaatggtggggggtgccacttgacagtaataggacattat
tctgaagccagaagctgtagacatcatgtcccttgaggctattctgagctgactgctgaagatgaccttcctgcactgagattgtaggatttggggaaac
caaggctgtatatttgctattgtttatcccatactgttcttgcaaacaaaacaaaacaaaataaaaatttactgggacaccattgccatggtaccaactt
gtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA promoter
1567 chr7 128751128 128751129 RIP_Alu_chr7_128_01 0 + pAlu7-128696390 NA NA SINE Alu Sx ctgacctcgtgatccgcccacctcagcctcccaaagtgctgcgattacaggcgtgagccaccgcgcccagccagtgccacatacttttaaacaactagat
ctggaaagaactcactatctcgagaacagcaccaatccatgcaggatccatccccatgacccaaacacctccaccaggccgcacctccaacactggggat
tacaattccacatgagatttgggcagggacaaatataagcagtgataggtacgtccacatacaggtcatgagggctacctggaggaggcaacagctgaag
tgaaggccttgctgtgaagctatgggggctttttatgaggaaggctctatgcaagggtgaggatggatatggggcttgatggttAGAAAGTGGGAGAGAA
GGCCAGGTGCAGTGGCTCACACCTGTATTCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTCCAGACCAGCCTGGCTAACAT
GGTGAAACCCCATCTCTACTAAAAATAAAAAAATTAGCCAGGCATGGTGGCGTACACCTGTAATCCCAGCTACTCAGGAGGCCGAGGCAGAAGAATTGCT
TGTACCTGGGAGGTAGATGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGCGACAGGAGGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA
AAAAAGAAAGTGGGAGAGAAGGgggaacggtgactgcaggaatagaaaaaatgtccacagaggaggaaggaggacatggcagtcacatgtggatggggaa
ttttccattacaaatctgatgatagaatccaaagagacagtgacaagtgtcagcgagggtgggaaaaattgcaaccctcatgcgttgctggtggggatat
aaaatggagccgctgtggaagacagtttggcagccactcagaacgtaagtagagttaccatacagctcagcaattctactcccaggtacacgcccagaga
actgaacacacggtcacacaacatcttgtacataagccaagtacagcggtgctcgcctatagtcccagctactcaggaggctgaggccagagggtatctt
gaaccc Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1585 chr7 131122760 131122761 RIP_Alu_chr7_131_01 0 - pAlu7-86696097 NA NA SINE Alu Yb3a2 atactgtaaacacccctacataaataaactagaaaatctagaagaaatggataaattcctcaacacatacaccctcccaagactaaaccaggaagaagtt
gaatctctgaatagaccaataacgggctctgaaattaatagcttaccaaccaaaaaaagtccaggaccagacagaatcacagccgaattctaccagaggt
acaaggaggaactggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgat
accaaagcctggcagagtcacaacaaaaaaagagaattttagaccaatatccctgacgaacatcaatgcaaaaatcctcaataaAATACTGGCAAACCGT
GGGCGCGGTGGCTCACGCCTATAATCGCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAAGAGATCAAGACCATCCTGGCTAACATGGTGAA
ACCCTGTCTCTACTAAAAATACAAAAACTAGCCAGGCGTGGTGGTGGGGACCTGTAGTCTCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGTGAACC
CGGGAGGCGCAGCTTGCAGTGAGCCCAGATAGCGCCACTACAGTCCGGCCTGGGCGAAACAGCGCAACTCCGTCTCAAAAAATAAATAAATAAAATAAAA
TAAAATAAAATAAAATAAAATAAAATACTGGCAAACCGAatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcacccctgggatgc
aaggctggttcaacatacacaaatcaataaacgtaatacagcatataaacagaaccaaagaaaaaaaccacattattatctcaatagatgcagaaaaggc
ctttgacaaaattcaacagccattcatgctaaaaactctcaataaattaggtattgatgggaggtatctaaacataataagagctatttatgacaaaccc
atagccaatatcatactgaatgggaaaaactggaagcattccctttgaaaattggcacaagacaggatgccctctctcaccactcctattcaacatagtg
ttggaagttctggccagggcaat Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1596 chr7 132564945 132565259 RIP_Alu_chr7_132_01 0 + pAlu7-132510000 NA NA SINE Alu Yb10 tgcttaaattagatgggagccagtgaaattatagtcaaactgcatgaagctgattttagaaccacattttcttaaaatggaggttatgtaggttacatgt
tttactggctcatggagctcttcaaaatgacccagttcagaatgacattcaacttagagctgattgaaatgggcattggtggaaaatcccttggggattt
gtggagcaattaaaaataacctaggaatctaattctttttaataatagaaaaaaaatctgtagttagaattttagagaagtatgtgaaagttttatctta
ctacagaaattatgggaaatgcttactttttaaaaggagaaagggaaagaatctcatgttgaaaattgtcattaggtaaagtAATAGAATTAATGGAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAATAGAATTAATGGAGCAatccaaaatgagctaaataagtttctttgtgagaattcttctagagattaattctagaattcttctag
agacttcataatatatggtaaaactaatattgctgcttagatattctgtgtcgtcttttgtcctcactttaggtaagcaatatgtacgccatagcactct
ctatcttactttacatcactttgctcatttggtgattgtgtaggtgtgagtatgtgcatgtgtgtagacttttgtcagtttccttcctgctaaattttaa
gctcattgaaagtaagaaccatgtgattagcttattattattatgtaccctgtacctagtgctgttcttggacataatagtgagaggtgacaacgtgcta
gcagccctcggtcg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1612 chr7 134646470 134646788 RIP_Alu_chr7_134_01 0 - Ya5ACA1592 ATTGGCTTGTGGATATGCCT AAGAAATGCTCCACCCCTTT SINE Alu Ya5 tgatgtattgctattaggataagtcttgctatttgtataggtgtgtatgtcagataactgttcaaaaacaacttttttaaagtatggctactaaaatctc
acctcttgagttttaaagcaattatggagtagaatttgaaatcaaaataatcaaaattggcttgtggatatgcctaaaaccagtttggaaaaaaggtcaa
ggcaaaaaagcagtgtaattagaagaataaaatgctttcccttaaaaatagtagatgtgaccgggcacggtggctcacgcctgtaatcccagcactttgg
gaggccgaggtgggcagatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacAAAAATTAGCCGGATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGATCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAAA
AAAAAAAAAAAAAAAAAAAAAAATTAGCCGGATGtggtggcacgtgcctgtaattccagctactcgggaggctgaggcaggagaatcatttgaacttggg
agtcagaggttgcagtgatctgagattgcgccattgcactctagcctgggtgacagagtgagactttgtctccaaaaaaaaaaaaaaaaattagtagatc
ttatattactgcttttggaagcaattagtgaatgatgtaggcaaaatagtgattgaattttgaaaagcaattagactgaaatttcaaaggggtggagcat
ttcttaatagcaacaaacagatacatggtcattaatccaaatatctgaaattttctgagcatgtttttcagagtttggaatagagtggaagtgctaattt
tctgattatttaagaacc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 850 516 NA intron
1624 chr7 136291721 136292006 RIP_Alu_chr7_136_03 0 - pAlu7-136236560 NA NA SINE Alu Yd3 tccaaggattgtctgatcctgtagaggtgtctgccttcattttattctgtttttaactaggctgtttcacaatgctgacaagaagttaacctgtagaaat
ccaatagcaatgcaaatgattcctgtccatagaaatccaaattatgtctggtggaatgcaattgattatcaatctgtggatattaaatatgaatcagttt
tattagtttttgcatccattgtaaatgtttcagcatttctaataagactgagtgtgtgatactttgagtgctttttgaaatagttacagcatctatgatt
tctcttattaattaatgagttaaataaaatcttccaaatcttccatgtgtttacatctgtatgtcatgtttatatgtctttttAAGAATTGTCCTTTGTC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGTGGATCACAAGGTCGGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGGGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAATTGTCCTTTG
TCatcctttttgtgaatgccactttaatttagttagaagaaatttgttcgttgcagcaccaaagggttctaactattgcatagagtacctttcttgcttg
ctttttttgtctgttttttttttttttaactaagacaatctacttgacaaaacaaaccatcatgagaaggaggttttgacactttaagcttagaataaat
tgaagtgtgtctataaaaacatgaaatattctttttgaaagtaccatataaatgctagtgcctattgctaatgaacagaattgaatggtattaagagaaa
agttattaagcttcagtgatactccttcatattgtgtgtaaccaccacaggtattgctttctttttttaagtcaatgattttgag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1624 chr7 136308880 136309179 RIP_Alu_chr7_136_01 0 + Ya5524|Ya5NBC242|Ya5ACA1650 GGCAATCTGACCTTGGGTAA GGCTATTCAAGTGGCCAAGA SINE Alu Ya5 tggtaatgtaattgtttgaaggtgtgtgtctattttcattagactcagagactcagaggcgggtcacctgcttgtctcttggttgtgcaacttcctcatt
gaaattactggtcataaatattgtcatatatatcctcaaacctccaactaacagcagaaatcccctgcaagctcttaactgagacacctttgaatagctt
cagtggctattcaagtggccaagagctcattacctatacagataatttgggtgatttaatagattaactcaactactcaattgggtaattcaaattatta
caatatactaaacaaaattccctttcctccagtggttttatcacacaaagctaaacggaatatatctactttgcagtgtctctttaaaATCTAACTTCTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
TCTAACTTCTGctagcatatatcctctttgtcatcattattataaacaatttacagatgcagaaactgaggctgaaaaacattaaacaccttacccaagg
tcagattgccaaggttaatggctattctgggacttaaactcagatctcttttatttcataatttatgaacataaacactatgctgtcctgaaaataacta
cattttctttaaaagcatctttttataagtggcttctacagcactataaatctcaaaattctttctccatataccatttaatttgtcagtttctttctca
aaatgtggccctgaaattaacaaaatgttgtcagttaaagacggagttcagggggattatcaccaaatttggtttggaccccagaagtctatcttagta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate sequencing|Candidate screening|Selective database search followed by genotyping NA 60 605 310 NA intergenic
1629 chr7 136912539 136912833 RIP_Alu_chr7_136_02 0 - 11843 NA NA SINE Alu Ya5 tgtgatcctagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgaactgagattgcaccactgcactccagctta
agtgacagaggtgagatgccatctcaaaaaaaataaataaaaataaataaagaatgaatataattgcaaagataaaacgtaaacccagattgggaataag
aagcagaattataccaaaatggaagctgacgattacacagattcactccttatttactcattcaaagcttgcctcacataccataggtaaagtgggtaac
tctttctgatttttttggttcacttcaagactatatgatcttgaaattttaaataaataagctaaaaaggccctaaaatattttattAAAACCCACTGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAACC
CACTGAGtataatttattgatttttataaaactaattctttttttttctgttttacttataagttttgggatatgtgtgtagaatgcgtaggtttgttac
ataggtatacatgtgccatggtggtttgctgcacctatcaacccgtcatctaggttttaagcccctcatgcattaggtatttgtcctaatgctctccctc
ccctgcctcccacccccagacaggccctgatgtgtgttgttcccctccctgtgtccatgtgttctcattgtttcactcccgcttatgagagagaacatgc
agtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacatttcatttttatggct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1648 chr7 139386597 139386598 RIP_Alu_chr7_139_01 0 - Ya5-MLS39 CTAGGCATATTAACGCAATAAAAGTAG CTTGCTTTCTAGACCTGAGCTGTC SINE Alu Ya5 aaagtagaaagctggggcgtggtggctcacgcctatagtcccagctattaaggagggtgaggtgggaggactgcttgaggccaggagtttgaggccaccc
tgggcaacataatgagacccccacctctaaaacaaaattagccaggggacggtggggtgtgcctgtagtcctaactgttcaggagcctgaggtgggaaga
ttactggagcccaggaattcctggctgtagtgagctatgattgtgtcactgtacttcagcctgggagacagtgagatgaagaaagaaaagaaagaaaaga
gaagagaagggaagagaaggaaagagaaagaaaggagggagggagggaaggaaggaaggagagaaaaagctgaaattaattgtAATAATCTATTTGACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
GGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
ATAATCTATTTGACTTaacccaatagatctaaaatactttaatacataatcaatgttgcaagtattaatgattacatttttttccttactgagtctttga
agtccaatgtttgtttgacacatacaacacatctcaatttggactagccagacttcaagtgctcaacggccccatgtggctagtggctaatgtactggac
agctcaggtctagaaagcaagggctgataaatgaaaaggaagcaaatagcatccattgataggaatacaagttgtgtaggatgtaagccactgactttga
gtgccgatttcttagttttattttagtgaaaataaaatcagttcacacccagtatcagttccctaaccctatattcccctaaggtcccagattactcaa Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
1657 chr7 140567064 140567367 RIP_Alu_chr7_140_02 0 - pAlu7-140444196|3181 NA NA SINE Alu Yb3a2 gaagcagatgctactactaaatatataaatacacatttataataacttagtgtatttgtgggtatgtgagtatagatagggagagagatgctcagagaag
atggagatagatataagctagacaatagctttctatataaacatttacatctttctatctagcaaattagtttgagaaggaaaagtcatttgcagatact
ctctagtgaagtattaatttccaaatgttatcggctgaccaactatatccttttatgtaagaagcatattgcagacattaaatactctattgtgaagact
gaaaacgacctaaactattccaacaattggtatatggttatagaaattatggtatactcacattatgagctattacacagccatAAAAATGATGTTTTTG
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATGATGTTTTTGgagaaattaagtaatgttggaaaaaactagacatgaaattgtatgttttatctgctcctggatacgtaattataatgatta
taaacactaatgataataataagcaagaaaaaaagaccaaaaggaaatataccaaaggttaatagtgggagaagagaattttcaatgattttttttattc
ctctttatcgttttctgtggtttctaaattccccacaataataagtatgtgttgctcttacatcaaagaggaaaatacttaaaacattatttaagaacaa
acacagaaacaaacaaatgtccttgagcttacataaggaatataaggataaaggaagttcaaacagctcttttcagcatcgtctgcgcagaagctgtcct
tcc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1658 chr7 140649409 140649673 RIP_Alu_chr7_140_01 0 + Ya5ACA1667 TGTCAGTGGCCTGTGAGAAC TCCTCTGTCATGTCTTCTTTTCC SINE Alu Ya5 cttggggattcggccattctctgcagtgcccagcacttccttggacctgtgggccccagagctctctcaaaaagagctcctaagctctggggccagatgg
agcaagctaagcacatgctcctatgaagacctggcccccagtgtcagtcactggagatgtggcctcttgaaattttccccttatagttgggacacagtgt
cttttcatttttcccagggatttctcctggggcaagatggaggaggccagctcttgaacttttccccttgctgtcagtggcctgtgagaacctggtatgt
gatccatataaggatctttctccttggcatgtctttctttcagctttctttcctttgctttcttcaggagagattaaaagaagcttAAAACCTCTGTAGA
TTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC
CAGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCC
CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACCTCTGTAGAagggaaaagaagacatgacaga
ggaatcattttaaaatcactatgtttctccaaaatatggaattactgcaaaaaaaatggtctaaaatcaaaagaatcctagtttttcacttctggaagtc
aatgttgagtctctgtgtttgacctatatatttccccattgtattcaatgtactgatacataaagaaagcatctcagtatgggggtaaggtggtagtggt
tcagactcccacagagatttggtgaagacagggagaagatctttcacatacaggctgaaaacaagttcaaaaatcaggtagaggctacgagattgctgtg
gtcagtgtggggctgcaggcttgagcctgaggctgctcaaccagttttgctcttgaagtccctg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 432 154 NA intergenic
1671 chr7 142377470 142377471 RIP_Alu_chr7_142_01 0 - pAlu7-144624675 NA NA SINE Alu Yg6 atcctaaatatatatgcatccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccaaacaataataatga
aagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaacaaggaaatccaggaattgaactcagctctgcaccaagtggacct
aatagacatctacagaactctccaccccagatcaacagaatatacattcttctcagcaccacacaacacctattccaaaattgaccacatagttggaagt
aaggcactcttcagcaaatgtgaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattAAGAAACTCACTC
AAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGCGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCG
TGAATCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAATAAAATAAA
ATAAAAAAAAAAAGAAACTCAaaaactgctcaactacatggaaactgaacaacctgctgctgaatgactactgggtacatgacgaaatgaaggcagaaat
aaagattttcttcgaaaccaatgaaaacaaagacacaacataccagaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaat
gtccacaagagaaagcaggaaagatctaaaattgacatcctaacatcacaattaaaagaactagagaagcaagaggaaacacattcaaaagctagcagaa
ggcaagaaataagtaagatcagagcagaactaaaggagatagagacacaaaacaacccttcaaaaaatcgatgaatccaagagctggttttttgaaaaga
tcaacaaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1678 chr7 143336250 143336571 RIP_Alu_chr7_143_01 0 - Ya5NBC35 GAGAAGTACTCAGAGAGGACATCATTT GTAGTCATGGAGGTAAGAAAAGAAGACAC SINE Alu Ya5 aaaacaggtagtgccgatcaaaccaggcaagctgaagcccatggctcctggacacaaatgatgacagctgtgactaaactcctaggcaaggctctttgat
gtgtctatctggccaataggcctctacatcttgaaagcaaagtagcaacattgagaaaaaaaagggccaggctgtgaaatgcaagttcaaagcaagcagc
aaagtattaatagttgagcttctttctgcaaataaaacacagagctctagaggcagcccctgcaaaatcaagagcagaactcctcaaggagtcctctcac
aaacagagaagtactcagagaggacatcattttattcacctccaacagtcaattcttcaaatctgacttgatcattttatcttcAAAAAACAGTCAGCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTAAAAAAAAAAAATAAAAAA
AATAAATAAATAAATAAATAAAAAAACAGTCAGCACaatactaaaatccattccctgtcttattttcccattgcccctgcattcgttcaaggtgtcttct
tttcttacctccatgactacaatatccatctaattgctacaacagctgattgccttccttgcccctccacttcactatccacaccagtccattctctcaa
ctgcccccagagcttttttttctaaatctaaccttagaatctgatctcatcatgaccttgcttgaaacccttccaaggaggcctatccccagaaggatga
agtccaaactcagtagcaggaatggcctacaaggcctttcatgatttggctgcccgactacccttccaacttcattctctgccatttcttcaccacatct
catgttaaacccacactatt UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate sequencing|Candidate screening NA 60 515 179 NA intergenic
1743 chr7 151857061 151857363 RIP_Alu_chr7_151_01 0 - 2533 NA NA SINE Alu Ya5 ctcaaactccccacctcaggtgatccacccgtcttggcctcccaaagtgctgggattacaggtgtgaaccatcgtgcccgaccttgcccgaccgaatacg
tatatcctctctatgtatccactccatgctgtagccttggttcataccctcattctcctaccttagcttttgcaaatgttcctcctgaataatctcccaa
attccattctgtcttccgggggaaactgaaatctgatcatgttcatcacgtgaggatcactccaaagctcacacctgtgatcctaggtgctttgagaggc
cgagatgcggggatcacttgaagccagaagttcaagaccagcctgggcaacaaagccagaccccatctctacaaacaaatgaaaatAAAAGTAGTGATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTAAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGTAGTGATCCagttctccgtgacctgcctacatctccagcctcacctcttcagcagcctgagtgcgccttgcaatctaccaccgcaaaacgttg
ctttacatctttgctcctcccttttgaaatcctctccttgctaacattaccccctcccttggcctatcccagattctccgcctctatagtctgaatgttt
gtggctccccaaaatgtatgtgttgaaacctaatctccagtgtgatggtatttggaggaggggcctttgggaggtgattagggcatgagagtggagtctc
atgaatgggattagtgcccttagaaagaggcctcagaggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccggggtgggcagatca
cc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1758 chr7 153819928 153819929 RIP_Alu_chr7_153_01 0 - pAlu7-153697150 NA NA SINE Alu Yb7 gtccagtgggtgacactgactgtggccatctcattccttgtcgaggccatcattatgggctgagatacagtggatcacttactcgcagaatatatttttt
ggtttgagtaaaaaatagtatcggctgggcgtggtggctcatgcctgtaatttcagcactttgggaggccaaggtgagcggatcacctgaggtcgggagt
tcgagaccagcctgaccaacatggagaaaccccgtctctactaaacatacaaaattagccgggtgtggtggcacatgcctgtaatcccagctactcgaga
ggctgaggcaggagaatcgtttgaacctgggaggtggaggtttcagtgagccacgactgagccattgcactccagcctgggcaacAAGAGTTAAACTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAGTTAAACTCCAtatcaaacaacagcaacaaaaaaatagtatctaccttattagtaaacaaaggcatattttttagctt
agctcttctacttcaaatgcaaacataacacggacctacccgctgctgagaacgcattaaatgttacaatactgagaggttctaaaaagacactagaaat
tatgtgtaaggctgtaggagatgtaaaagcataaaaaaataagtttcagaagaccaggttgtaatttttgaataataaaaaatagatttcgatgtacagg
ttggtttcgcatcatctctaccccaaggtgctttcttgggattgaaacggctagagatgctcccctgggccattctgccaaacaagtgaccatccctgct
atcactgcagggtcatct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1762 chr7 154295867 154295868 RIP_Alu_chr7_154_02 0 - pAlu7-154173091 NA NA SINE Alu Y aagacaagacaagcaagaaaagaagtctcaagtttgttagagtcctctgtaaaatacgtgtgctccaagatgtgagaaataattttgtctttgaagaatc
ggaccccaacaacgtcattgatgatgttagggcttcagtggcctggagtgtaacagggtattcctttcattataaaaatatacgtattgcatctggtacc
tcccccgctggaaaggaaacctaatacttggtcagcactttgaatgccagaggcagctgctctgattcacatcctggtgatgtggaaaggctgccaggtt
cggttggggctaagagcaggaaatggctctagcagaagtcctggctgcagtgaaagcagcccaactgcttgggctttatgatttgcaAAGCTTATGTTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGCTTATGTTACtaggagtacctgtaatgggaaaaaactccatgaggattttatgataaacaccagcaaaagagtcacagtatagaccctga
gggttctggaggaaagtcactccgtctacaacaggaaacattacactgttggaaaagcagtttgtgtgagccagggctctggcagaaatagagcatctga
gcatgagacattaagtgacactggaacaaaatataaccatcaagatgtggaattttgcagacccacctacaagattgggtgggctcagcagcaaaacagc
ataaaacagaagtggtgcagagcagagctggagggtgcaagccagctccacaagaggtggcccagaccaccctgctgtctgtcatcactgtacaagcacc
tacccct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA promoter
1762 chr7 154379580 154379892 RIP_Alu_chr7_154_01 0 + pAlu7-154256716 NA NA SINE Alu Yb7 aattcaattaaataagtatttattgagcccttactatgtgcacagaggtctctgtccaagcttcatttgcaaatagattcatttgacaaagatgagaagt
ggacatgcaaactactctaatgtaaagaaaaaggaaataaacttgtatttgaataaataaatggtgtcttcacaaatctgtggccttagtcaaaagctct
tcacattctcacccaatcagatcaatccattctgcctctccacttatcaatcttatttatctataaaggtccagtaaaaacgttactatatcctgtgaac
agtctagttttgaattcatagacataaaatcttagcacctgaaggatacgtagaggtctggcctcacccttagtgttactgctAAGAAAAGTGGGTGCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAACCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACCCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAGTGGGTGCAAttgatggacacctccgggatggccagagacaaggccaggaggagcccaggcaccctcccttctgggtacca
ctcctctggggcttgagctctccgtggctttgttgtacgtttaccccttgaccccctgctgagattataagctctatatggcaggaattgcgacttggga
cttttgttccacctatgtggctttacatggagtaggacctcagtaaacatttttgcacagctttattgaagtataattggtgtatggtaaactgcacata
cctaaagtgcacctttgatgagttttgatgtatatttatgcacctatgacatcatccccacaattaagacaatgagcatctccatcagtaaacatttttt
gttcattgttgt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
600 chr8 2024422 2024461 RIP_Alu_chr8_002_01 0 - 6898 NA NA SINE Alu Sc tcgcatttcaatttaaagttattaccatattgcagctacttgcagtagtgattaaatgacagcaatctaaatggctgtcaatacggtcagacacatgatg
atatgttcatagattaaaaacctcatggccatttaaattattgtataaagatctttagtctaataagaggaatgatgttattttgtgaaatctaatacag
aatgcaaattgtatgatacaacaagagcattaaagtctatggagaaaaagactataaatatatgtaccacacgttaatgtggctattttatatggtggaa
ttattgctcattttaattgcattccatgtaacttctctgtctttcccaaattttatatactgcttgtttaatttttatcttttgtaattaAAAAACCTTG
CTTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAACCTTGattacatgttttattttattttttcacatagagataaaacgcctttttcga
aagtagttttgtggtagtaaaagttggatatacactgaccctggtaagcctgctgaaaatttcagatagcaacccagacttctagaaatcagactcatat
ttgaaggagttttctctcattttggtgaaagtgaaaagccgctattttgtatctgccccgggcgtttgtggtgggagcccccagggcgtcatgggcctga
ggtccttgcgaccccaagcgaccgcagtccaggtgtctataggagagcttcctctcctacatcagaatatgggtccacaaagggaaggcttatccactgc
tgggggaatgtcattagctcagtcactgtggaaagcagt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
617 chr8 4209472 4209800 RIP_Alu_chr8_004_01 0 + pAlu8-4372545 NA NA SINE Alu Ya5 tctctcttgtacttcataaatatatatacctactaaatgcccacaaaaatttaaaaaataagttattgtaaaaataagtagttaattaacattaaaaatg
ctttacatctcaaaggggcagaaaggattacaactttctttaagccaaggggaacattaaggtcctcttgataagactagggcccttaaaataaagagaa
atcttacctaagaaaacagctttcccctcttcagttcctgtttactgttatagcttccattattgccctagtccatacaagattcatttgtttttcatgt
tttttccaaagtaatctatttttagtaatacaatttcctctcttgctttctagaagactctacattgtcagttaaaacattttttaaaAAGATAATCAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGCGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAATCAATataatacactgcctgttactaaaatcataaccaaatattgaacctaaatcaaagcacccg
acaaaaacgtgcaagggatttaatatgtttaaattttactcgaaaacatttatattctaatggaactcagatgatattttatgaaatatgttctctttca
attgtgaggacattttccatattcatcagttgtaatggcaagtttacaagaaaaagtttaaatactttaagtgtgtagacatatagtgaactaatataca
gcatatcatatttttattttgaatttggtagttttgctcacaataaatatttgcaccttgtctatatataaaaaaagagttttgttaatgcttaagtagt
ttggaatgtaattttactttcttaaaga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
628 chr8 5735595 5735913 RIP_Alu_chr8_005_01 0 + Yb8NBC636 CCTCTGGCAAGCTGCTTAAT TCACAGCTAGAGGAGACATGAAA SINE Alu Yb8 acaaaaaatattgttattttttaacatctaattttattaaatatctactttgtgttaggttctggtaaatataatagaaatgaatttctactgtttatgt
gttttaaagaaaataaatacattttcttctcatgtatgggctgcttttgattcaagtaagaggaaaatcagtgaggatttcttaaaagccatagatattt
taaagttatatatttttctttccacaacttgtatctctctctttaatgggagagaaattacagtgtgttttagtggtttaaggcatatctcaaaagctag
acacacctgggaaaaaaaaattttgccaaccattattattggtgacctctggcaagctgcttaataaaatcctcaatttctctctctatAAAAATGGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAATGGAGAtaataatccttatctgatggagttttaattatcatggaatgatttcaaatctctgtgtgtttactgtactt
agcagactacttatttctgttttcatgtctcctctagctgtgactttttttttcaccatggaagcaaaaatgctcattctgcttttggttttgttttgtt
ttactttactttttttttttttttttttataaacaacagcatttttctaggcacattttccttaattttcaaataaatgacaaccagtcattaaaataac
ttcaatcttcttattaaactgaaaaacagatttaatcttgttatagaatactttcaaatataactcatcatcatcttcatcaccatcctcatccttttaa
tgtataatgagttactat UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 498 169 NA intergenic
631 chr8 6032385 6032386 RIP_Alu_chr8_006_01 0 + pAlu8-6195558 NA NA SINE Alu Y caatatttgtgaagagacatttcatttaattacattagacaaggagatggtctcgacttggaaatgctcaggaaataaacttttcaatgtaatttcccac
tggagagtatacacataataaagtcattgacttcagctagcactaatcagtattaatgccttcaatcattgccatcaatagctatcttggagaatcacaa
aatttaactgccttcctacagtggaggcataaacggatacgggtccccttgtaggaagaggaccaggagctgcaccaatggctgtgtttcctcctcgatg
accttcccatgaatgaatgtgtcccccttggatactgccatccactcaccagccgtccattagttcttcagaagtattgatcAATATGCAACACTTAAGG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AATATGCAACACTTAAGGtttcaaacaacacttaaatgcaatttttgaaggtatctcaaggtgggccttggtaaatggtaacttttcaaaggttgcctga
agccataacaacagggggagcacagcatgctgcctttccctgtcaaaggacatgagccttattatctcagcaatatcccaaagcacctcacaagtctggg
aaaaaaatttcaaaacagcaagcaattttcagccccaaactgcacaaattaaagcatttctctctgctctgaacttattcagtctcagtacagatatgtt
aaatgaactgacataagaagtaaaatgaaaattaaattaaatttgccttttccctgcagggaacactacccataaataaaatgctgcgaacccaaccgtt
Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
676 chr8 11971715 11972025 RIP_Alu_chr8_011_01 0 + pAlu8-11805240 NA NA SINE Alu Y cttcacagagaagcagcaggcttgaaaataatgcccagattcttaacaccaatgccagaagaaacagaatggacctcattcatgaaaaattggtctgcct
gttgactccctgtaatatattctcagaagccttgttttttcacctaacctggacctcacgcagtggtaaagctgctacttggtgtggggcggtattagaa
aacatttacagaaaaacattataaatactgtcgcctgaacactggggaaaacaatagactaaacaaaagtcttcagaggaagtcctgggaatgagatgct
ttggggaatgtgggctttgaaaagcttcaacatatttctgagaatttgcaaaactgtgtatgtcaaggctgtgtgcatgtttagtaaaAACCTGGGAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACCTGGGAAATttctaccttccctgcacaagcagaaagtgtaagccaaggcagagtcgtaatctgtctgtctgagtgttgaaagcaggg
cccaacacatacacaaagcccctctgcaagttccaaacacatatggaaatctttgtcaaattattagctgacctctaagctaatggaaaaaatattttaa
tcgacataggtgacaaaaaatagagaccaaaaagtttattcagaaaagatactgaacaaacaaataactacaatgaggagtacaacgtggggaggacgga
gaatcttatttctagagtggccacattatcatgtttaaaatgtctggtattcaaaaaaagtatgagacatgcaaaaagaaaaaacccaagaaagtatggc
acatggaaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
680 chr8 12573087 12573401 RIP_Alu_chr8_012_01 0 - pAlu8-12303806 NA NA SINE Alu Yb7 acttgttatctccacttggctgtctgtcttgcattgacctcatcttaccttgcctctcctgatttcctcttctgcctgggctcaccacgtcagattcaca
ccaccatccacccagcttccaaaacacctgggcctcctccttcattcctccctctttctcagtcaagttagtctactgtctcctctccatcctcactgcc
acagccttggtccagccaaccatcttgtctcacttggtgtattgcagcctcctacctggtctactcacctcccactctcctccagccagactgctcttgt
tctagcacaaagtggatcattactcccctgtctaaaaacatctactgtctccctttgtctacaggatagacacgacaaagagcctttAAGATTTGGCTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGATTTGGCTCCaacttacctctatgttagtcactttttataattatatgaacatctctcagctcctcaccctctcacgtctcga
tttttgcacatgctcttccctctgctgggaatgatcttccacacctctcctatcgacctggctagttcctaccattttctagtcttcaactgaggagtcc
tgtggtggagagggatttctcacaacctgatatagattgcacgcccacccacctccgggctttttcttttttctttcttttgttttttttgaaggagtct
tgctctgaccatgcaggctggagtgcagtggtgcgatcttggctcactgcaatctccaccacccgggttcaagcaattctcccacctcagccttctgagt
atctggaattacag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
699 chr8 15045650 15045957 RIP_Alu_chr8_015_01 0 - pAlu8-14776369|3648|Ya5ACA1785 TCCTCTCACCCAGAAAGCAG ATTAACCCATCTCCTTGGGG SINE Alu Ya5 aaaaaagtgaatgtcaacctgctaagacaacaaactgtatagaactacttctgagcctgttgcatgaaaagccttcattaaactaggaaacgttaatatt
tgaggatatgcaacaataataggtcaacctgaggtacaaaaataacacagaagctgtagagctttgttgaaattgtgtagcatataacaaagatatatag
gatcaagtacattaaaaatgcataagaaatattttaagtctgaacctttgccaagaactgtgatatcatttgtggaatgcaattttctgattctgtatca
ccttttattacaccaacttcaaaatgccagaaactgatgtttcctctcacccagaaagcagaaatgaaacagatattttgctaagttAAGGTAATAATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGTAATAATAGattgaccacagataaataagcaattacaataactaaattataaggaaacactaccttactttagagatgcaaaaactgag
ccccaaggagatgggttaattctcctagtgtcagacatagtgagactaggagatgtgttaatagatgggttaaacccatgtgtttttgtaagccatggtt
ttcagaaagaagtaacttaaataaaacctaaatggtacttaactaatttccaatgatctggctattttcaaaacactttggaaaactggagcatgagaat
attataaatgcaaaatgtttctttgaaattctcttaaatacatttcattttttttcctgtgagagctactttgcttgagccttatagaaataattctgct
tttgagt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Trace comparison|Genome comparison|Candidate screening NA 55 479 159 NA intergenic
700 chr8 15097776 15098076 RIP_Alu_chr8_015_03 0 - Yc1RG60 TCCCACATTTCAGTGTGAATTT GGCATTTGGGATAGTTCCTG SINE Alu Yc1 cattttaggggtggtttcttctgtagtcaaatgaaaactttggcaagtcttaacacccacaatataatacaatcttagttttaacctaatggagtataat
aaatgatgctatgttatcatattcttttcacttgcaggatgataacatttcatgtattctagctttcatgcatgattcctaagcttactggacttttgat
acctgcactttttcactggggtgttttcatttgggagcttttcttgagttaaatggagacaacaggagattgtcaaatccagttttgagcaaaacaaatt
ttggattaagaaaagaactacatctttgtatttaaaacagtggcatctgatttataaggtggcatttgggatagttcctgcctttAAAAAATCGAAGCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATCGAAGCCTaaggatgtataaaacccattataaatttataaagagtagctattagcttgtgttaagtctcatttgctataaacatacagtttaa
atgacttgttataaattcacactgaaatgtgggaggtaagttttttttagatgaaaaatcggttgtcgtaagaccgagtattatacttgaacataccaaa
tggcaacatttcagagtaatcctgcagagagacgtttagttgccttatagaagtatttcactggggtggcacactaatggaatttgagctccaatcaggc
acggactcttgtcaccaaagggttaaaaatacaacccatcattttagcattgtgaaagaggaggctgatgacagcaagaaacaaacttgcaggagacaaa
UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 60 551 216 NA intergenic
702 chr8 15431674 15431964 RIP_Alu_chr8_015_02 0 - 13355 NA NA SINE Alu Yb8 ataataatggtaccatgaagatgaaacaagtgaatacatgcgaagtctttagcatctaacacattataaatactacatattaactcccattatgatagta
gcttttctagaaatatttaaccaaatttcacacatcaacttatccactatgccagacactagggtaaacacaggagtaggggcaagaaagaaatgatagg
caaagtcctcatctgagaaaatgcacagatattcagtgtgtttcctttagagaagcaagcagatcagtgacttgtcaaactgtccttatagctgctgtgt
ggacaacagactaccagagagcaaagatgtaagcagagacttcagccccatattccaggtactgtatatgatgtaatacaggagtgtAAAAAACTTTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAG
CGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAACTTT
TTCacagaattactatacatatggcaacctgtattctacagaagacattataagaggaaaatccctaaatgctccaataacacagtttgaaaaccaatgg
ctggaaatattaggcatttatatttaatcctagccatttttctaaacatattgatacgttagatagtacatctaagtaatgttagtatttttcaaacagt
tggctatttaaagcaaattttctataatgactgttttctaaaaatattctaaagtgaaactgattttgtatattacgatacatttcattcaattattttt
aaactgtatcttcagtgaaatttcaaattgctatgtctatgtaatcaacagtaattaaagtattgtaataatattgataaacctcaactt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
708 chr8 16147193 16147194 RIP_Alu_chr8_016_01 0 - pAlu8-15877999 NA NA SINE Alu Ya5a2 aatcttctctgctttcttttcttagtttattctcttacatttcaatatttttaataaaaataaattttatttacaaaggtaaaggataattactggtgaa
aattcatcctacaaataaaagaagaaagaagaaagttaagatttattttaaacctacaatgcaaggcaaatattataagcatttgggtcaacataatttc
agatattagctacatatccatctacctgtatctctacctacgtatctacaaaaatcgtaatggttatgaaccctcttttaaagtaacaactaggcttttt
tcactaactatatgccaagaaaatgttacatgccaataagtgtacgcatacatacaacacatgtacatatgcttatatatttttAAGAATCCATAATATG
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA
TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAATCCATAATATGtatacacacatatatgtaaggata
tatatgaacacagagacatatattgcctttttaatgactggatattttatttttattatgttaactaaaatatgtaataattatgtaataatgtatataa
tagagtttaataataaatcatctctatgcccaaaacactcctaaaaaataaattactatttatgatgccccaaattgggaatcaaccaaaatgttcttca
gcaggtgaatggataaacaaactgtggtcactcatacaatggaatattatttcgtgataaaaaccaatgagctatcaagtcacaaaaagacatgggggaa
ctgtaaatgcatattgctaagtaagaaaagccaatctgtctacacactgtattgttttaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
714 chr8 17006593 17006899 RIP_Alu_chr8_017_01 0 + Yc1NBC69|1815 CCCACATTTATCAGTACCTACA CCTTGCAGAATAGCAATGAT SINE Alu Yc1 ttctttgagaaatattgggtatccctattctgtttcttttattgaagctaacttttaaattgtgatttttttttaagcgtgctgatgacatcacaagttt
agtaacagatactacacttcttgtacacttttttggaaagaaaggaaaagctgagctcaactttgaagatttttataggtgagcttatttttatattttt
attaaaaattattagcctactgaaatcagaaggatctttagaaattgtctagtacagcaatactcacctctttgttactttaattttaaataagatcctc
tgtataataaatacccacatttatcagtacctacataccagtggttatattgataattataacaggaagttactgaatttttttAAAAATTCCAGATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATTCCAGATATCtggattgattgttatctcttgtatattcagaagaaagtatgttgccaattccttgtctcaataagctgcagtgatagt
aacaagtagtttaagtatcattgctattctgcaaggtacttttgttatccccatgttatagatgaggaaactaaacccctgaaaggctaggttatttgcc
ctgggtgctacagtcattaagtagtaaagcgatcgtgtgttcttttcattctcatttacagggaggaactttattaatctttgcatcatcatacaattat
ttccatataaccttttctaggacagtgagtatttgctcatctcctgttacgattactctttctttatctttttccttctttattacatttttgtcataga
ttcatg UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Candidate screening|Trace comparison NA 55 524 210 NA intron
717 chr8 17309986 17310296 RIP_Alu_chr8_017_02 0 + pAlu8-17074912|955 NA NA SINE Alu Yb8 agcaaacaatgtttagtgcacgcaaagaaaaaaaacaccagaagaaaatgtacccaaatattaaaagtggctaatttctacatgtagtccatattacttt
tataaccagaaaattattatttgctaaaggaagataaaagaagagataacccttggagctgacagtatactgacagtgaatgatcaagagaaggcaaacc
tcatggatctgctgatgtccgtctatcacagacagaacttgaaaatgagatcactatttgcccacggtgaaaacagaattgtataattataagttgttga
gttcaacactaattctggcagggttctaaaatgagttatttaatggacctttgtatgaacctaaaaagtggaaaccatcaatcagcAAGAACATCATGGA
GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGACCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAGAACATCATGGAttcaccgtcattatttcagaagacttcctttctttctttgatgagctctttggcgacgtgatgaaggacaaactta
tcaactgctagatgacatcaaactgagagaactactgaatctgctattaggatcaagatcctgagagatgggggcaagtggcttaagaagtcacttctgc
tcttggataagacaatgaatgaggtaacagaaagcaagctgattaaatagtggatggtaccaaactgacaggaacagcagatgtgtatcagcatccaaaa
aagagtaagagatgagcaaaagtctaaattcaatgagataatattcaacgtagagaagtataagatattatcatcaagcctaactactaatgggtaactt
gatgggcatc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
737 chr8 20024557 20024857 RIP_Alu_chr8_020_01 0 - pAlu8-19789476|18530 NA NA SINE Alu Ya5 tacggtcatcatgattattcattacgcacctatgatgtttcagttactttactagaaaaacaaagtcggataaaacctggctatgcctgcccagcaaccc
catataatagaggggctttgggaggtgggaggacttaagtatggtgggggcacaaagcgacctactcagccttcagccattcttaggggaaggggctgag
ggtagaagggagaaacttgtccagaggaggtgacatttgagctagaccttgaagcatagacaagagtagctttttctaaatgggagttgagcagtaaaga
cagggaggaatggtgggtgtattgagggaagataatggcagtggcagctgtaggcaggtctggcaaagcacagtcggattcctgtAAAAAGAGGCTTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGAGGCTTACAcactagccaggaagcattcagacctgaacttacagtaagtaaggaggagtcagacagacttgcatttatgtcttaacgtggctgt
atttgctgtatttgttcttctaaaacatctctttgacagccatgtggaggttggggaaatattgtgagcaggaagaccagctaggagccttctacttaaa
agtgacctaaaagggggcatgagcagatctaatggaggcggcaggatgaattttaaaaggcagaatttataagactttgtggctgggctcagtggctcat
gcctgtaatcccagcactttgggaggccaagatgggtgaatcacttgaggtcaggagttccagaccagcctgactcacatggggaaaccccatctctact
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
777 chr8 25228577 25228578 RIP_Alu_chr8_025_01 0 - pAlu8-24993188 NA NA SINE Alu Ya5 agtgcttgagctcctactctgcagcaggcgtgtgctgggtgtctgggtggcgatggtgagccactcaccagccttgccccaactcaggttacagtctggt
gccagagagaagcaccagtcaaataatctgcacaagtaaacccaccattagcaatggaggaatgtgccaggctctgtgaatgcacaataccaggtcctga
cctcgtctgcagggtatgggaatctttcctttcagctgttagcacagtcagggagagtggcctgtgcaaaggcccagaggtaggagacaacctgactgac
atcctcacagtgagggggtgtctggtgtgagatgaggctgtagagacagatataagtcagatccccctgaggccggtgggcaaattAAGAATTTTTATAT
GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAGAATTTTTATATttaccctcaacataaatgaaagtcagtaagatgttttcagcgagggaggagcgggatgagatcaggtgtgcttacagaatagaac
attcaggatgcagtaaggagaagagaaaatgagcaaagaaagaacagaaacatgaaaaccaggtaggaagctacggcagttgtccagggaagaggtcatc
gtagctccaatttgggtagtgacaatgcagatggagagaagggagagagagacttgagagtcctttcaaaggtaatgctgacaggtcttatctactaatt
tatgtgagttataaaggaaaaggagatatcaagggtgactttctggcttcttgcttgtgcagtggatggataggtgggtggatggatgggtgggtgggtg
g Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
817 chr8 30511832 30512123 RIP_Alu_chr8_030_01 0 + 238531|pAlu8-30248390 NA NA SINE Alu Yb8 cttgtgaaggatactatacacgtaagcacaaaataaatacttgttctggtttctagggatacattaacataattttaaaataggatttcagtcgttgatg
tttttaacattccctgtggatagatcaagggcaagtagcccacggctagccagcatagatggggaaccagaagaacgggggtggtggagttgctgagttc
ctagagcaggagaaggccatgggtgagagtgggagctcagttcagacacacagcttcattctggaattcctcacgtggctcacagaagagtttgcttatg
tgtgtgtctagatttatgttatttgtgctatgaagtatattttggggttctgattcatcagtttcctaggtcagtggcaatctcttAAAACTGATAACTA
ACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAAATACAAAAA
ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG
AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAT
AACTAtgacaagttagtagtttccaccttttttcgtcaaggactggaacctttgcagatttaagaaaactgacattttcttaaaagtcaaggaaatgtgc
taaactgtaaatcattgggtggattacataattctgaagtttatatcctcttgctagttttaagttagttgtaggcactttgtaatatcgttaattttaa
ctaacttttcttgaatatgttctgtgtgccagacatatgtgctaaggataggagataacagttttgtgaaggacatagacacagaaaaagaaaatttttc
gtataagcagtaggtgcagtgttcagggtacacatagcctgttttgggaggtgtaagaaaggatatctggtctttactggattttcaagag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
826 chr8 31690797 31691136 RIP_Alu_chr8_031_01 0 - pAlu8-31427348 NA NA SINE Alu Yb7 atactcatcaggattcaaaaggaaaaatggaggaaaaaaagtaaatgtgctttatccaccttaccattctaaaccctggctaattttatagcctaaaaat
ccacacttcattttaaactacatacatgaccaccaatacaaaaaaaatcttaataaaataaataaaattatcccaaaatgtcagttttcaaattacagta
caaacaaggcatcagaataaataaccttccacttgctgggtattacacaaaagcaacaaagaaaagaaaaaaatgaggaaaaaaataaactccttaatca
taaaagttagaacagatataatgttcacacttccaagcatacatagtctcccaaaggcaactgatattgtacagaaaaatcattatAAAGAAACAGAGAA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAGAGAAtagttggttcttcaagggcaaatttccaaagacactggcaaaaatat
tttctcaacatgtgtggcaccctgcaatgctaaaattgtatttttggtatactcaactatcctgtcaatagggcaaaggtctgatagaagcaaaaggaaa
taaattaaggagaaaatgaagtgaagagtgaggttaagtagcttaccattaacagttctcagaaaataccaacaaaaatacaccaccatggaaaagaagt
tacaataacagtagaatataccaatatgcaacacctcaccatgtgttaaaaattagaaggagtggccaggcgtggtggctcatacctgtaatcccagcac
tttgggaggccgaggccggcggatcacgaggtcaggaga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
889 chr8 39884487 39884803 RIP_Alu_chr8_039_01 0 + pAlu8-39506177 NA NA SINE Alu Ya5 acaaaaaaaaagcaagagagagaaacagattttgtgtgcctcatgtcttgtcatgcttcttcagaaggtgttttgattatttgcaaaaccgagtctctta
tcaatcaaacagcaaaggtttttgctttttgaaatcttctaattatcactttggctaaatgaatgactattattttttcattggacctatgatcctattt
tgatcaagtatttgaaacctttaatgtatttgagaggcttctcacaattatatttcaaaatctaaaattaagtatttttgacctcaaactaactttgaga
tattccaaaaagctgctgaagcttccaaaagaaataataaacaggcttatttgatatgttcattatgtaaaaagattttcaaatAAGAAATAATATTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCAGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATAATATTTAAccttttcaaaattatatttgtattgtcatgttattagtatttgctccaaaattatatgagattcctaa
aaattggatttgttttgttatatgttattagtcataattatgagtattatgttaaattgttgtaggtcataaaaggagaaaatgacctagttttcttgtt
aattccatctttaaccacggccatttttagtcttgctcacaattaatttttttatgctgatcctttttttctgaaagctctttgcaaatcctaaagtgtt
gtgtcttcaagaaagctcatggaaaggactgcaacaagtactcttggctgggcacagtggctcatgcctgtaatcccaacactttgggaggcagaggtgg
gtggatcacctgaggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
900 chr8 41398501 41398808 RIP_Alu_chr8_041_01 0 + pAlu8-41020191|13335 NA NA SINE Alu Ye5 tgtaaccctaccatcatagcacaaagtcaaccatagataacacataaatgaatgagtgtgactgtgttcaataagactttactgacactgaaatttggat
ttcatataatttttatgtatcataaaatattacttggatacttttccaactgcttaaaaatgaaaaaaaaaattggcccatgggtcatataaagataggc
ggcaaaccaaattggctctcgggccatagcttgctgaccctcatacagaaaaatgaacactagatttagagaagtcccaggctggagaaccgctactttt
gcttgtacaatgtgagacactgggcgagtcaaatgagttcaaataaattcttagggccttgatttactgttaaagcattggattAGATTAACCTTAAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAAGCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGATTAACCTTAAAAGccccttcagccctaaaaactctctagtggcttctgtttccagtggcttctgtttccagtggcctctgcatatggcag
actggttgagcttttaaaaaattcctttcaatacaaaatacattaaaattctgggtaaaataaaatgtcgttcaaaaaaccctcactaaggccgggcatg
gtggctcatgcctgtaatctcagcactttgtgaggctgaggtgggtggatcacaaggccagaagttcaagaccagcctggccaacatgccaaagccccgt
ctctactaaaaataccaaaattagccaggcgtggtggtgggcacctgctactcgggaggctgaggcaggagaatcgcttgactctgggggacagaggttg
cagtgag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
906 chr8 42159063 42159064 RIP_Alu_chr8_042_01 0 + TPA25 GTAAGAGTTCCGTAACAGGACAGCT CCCCACCCTAGGAGAACTTCTCTTT SINE Alu Ya8 gtggcaccagggcttggcatccccatcaggattcctaaatgataagagagtttaaggtttcctttttatcttcttattttttaatttttgtagagatggg
gtcttgccatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtgctgggattacaggcatgcaccaccac
accaggccaggagtttaagattttcaatcccattttcagccacatcacaggccatgtaagagtagaaggagactcagtcaaccaatgaaaaccactgagc
tgggagggaggacaccgagttcatcttgaccttgcagcacacccccaccctaggagaacttctctttaactttgttacccagtcagtaatGTAGTGTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AGTAGTGTTCTaatctcatagggttgtcagacagaactgtgagctgtcctgttacggaactcttacaaatcattgcaataaagatgtcaggagaacagct
gaggactaaatggttacaggccaggacccttaacttgggatttaggttggaaaactggtagaccttgcttttcacaatatgtgttattctagcaagtgaa
gaggttggattagataatatccatgggtgcttcccacgcactgggtctgtcatgcaacttgagacattggatcttcccccgtctcacaccctaatcccac
gttctgccaagacctgaaccccccacccctgtgctacctaccggcagtaattatgtttgcccaggcccagtgcctgggcactggggttctgtgctgtgta
a Other - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.PMID: 7714898.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.PMID: 8576959.
Direct sequencing|Candidate screening|Library screening NA 0 0 0 Myeloproliferative disorders intron
910 chr8 42705066 42705395 RIP_Alu_chr8_042_02 0 + 238640|Yb8AC1413 CAGAATCTCTGTGGCTTCCTG TGACCAAAATAGTTTTCTTCTGTGA SINE Alu Yb8 tggaaatatgtaacatgcaaagtgtgtgggcctgggtgagatcagaggccaggctggctcaaggtgaatcctgtactgagtccccagtagggtcacgcag
tccaaccgggacaatttccttttcttaataaaacagtggcttggtaaagctaacagaaacttgaagatttcaagatctaatacattgaactttcggaata
aaatcacagtgtactaatttcatgcaggaatggacagaccacaagttacgctggaatcctgatgattatggtgggatccattccattaaagttccatcag
aatctctgtggcttcctgacatagttctctttgaaaagtaagtatcacattgtttcttacttatggggaaaaaaataaatttttTAAAAAGTGAAAAAAA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAATA
AATAAATAAATAAATAAATAAATAAAAAATAAAAAGTGAAAAAAAggaaagtaagtatcacagaagaaaactattttggtcagattaacactaggaatag
aaaattctgattcaggcaaaatacttaaaagaaatattcaattttaaataaaaaaattgtttattaaaacagttacctggcgttgtggtagaaaagtcct
aaaatagggcagggtgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcaattcatgaggtcaggagttcgggaccagcctggcc
aacatggcgaaaccctgtctctactaaaaatacaaaaacttagctgcgcatggtggccggtgcctgtaatcccagctactcaggaggctgaagcaggcaa
attgcttgaacccgggaggcggaggttgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Trace comparison|Candidate screening NA 60 481 140 NA intron
947 chr8 47500483 47500805 RIP_Alu_chr8_047_01 0 - pAlu8-47071828 NA NA SINE Alu Yi6 aagcacactgaggcctacagtgaaaattcgaatatcccatgataaaaactacaaagaaagtatctgtgaaactgctttgtgaagtgtggatttacctcac
agagttaaaactttcttttaattcagaaggttggaaatactctttttgttgaatctgtgaagggacatttaaaagtgtaatgtggcctatagtgaaacac
caaatattccatggtcaaaacaagaaacaagctatttgtgaaactgctttgtgatgtgtggattctgctcacagagttacacctttcttttgagtcagga
ggttgaaaacactgttttcccagaatctacaaagggacatttaagagcaccctggggaatatagtgaaaaacaatatatcccacaataaAAGCTAGAAAG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTTCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGCTAGAAAGaagctgtctgtgataatgcttcagatgtgcagattcatctcacagagttaaacctttcttttaatta
accaaatgtgaaaacatgctctttgtagaatctgtgaagggatatttcaaagcccactgagggctatagtgaaaaactgaatatcctgtgataaaaactg
aaagaagctgtctgtgaaactacgttgttatatgtggattcagctcacaaagttaaatctttgtttttattcagcaggttggaaacactgtttttgtaga
atctgcaaagggacatttaaaagcagacattggcctacagtgaaacattgaatattccattataaaaactagaaagaagctatctgtgaaattgctttgt
gatatgttgattcagctcacag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
959 chr8 49081981 49082285 RIP_Alu_chr8_049_01 0 - pAlu8-48642507 NA NA SINE Alu Y aaaagatttttcacatcccttgtaggttgtattcctaggtatttttattctctttgtagcaattgtgaatgggagttcactcatgatttggctctctgtt
tgtctgttattagtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttgtcagcttaagaagatttgggg
ctgagactatggggttttctaaatatacaatcatgtcatctgcaaacagagacaatttgacttcctcttttcctaattgaataccctttatttctttctc
ttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatctttgtcttgtgccggCTTTCAAAGGGAATGCTTTT
GGCCGGGCATGGATCCCAGCACTTTGGGAGGCGGAGGCGGGCGGATCACGAGGTCAGAAGATCAAGACCATCTTGGCTAACACAGTGAAACCCTGTCTCT
ACTAAAAAAAAAAAAATACAAAAAATTAGCCAGGCATGGTGGCAGGCCCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCG
GGAGTTGGAGCTTGCAGTGAACCGAGATGGCGACACTGCACTCCACCCCAGCCTAGGGGACAGAGCGAGACTCCATCTCAAAATAAAAAAAAATAAAAAA
TAAAAAGAATCCTTCAttcgcccattcagtatgatattggctgtgggtttgtcgtaaatagctcttattattttgagatacattccatcaatgcctagtt
tattgagagtttttagcatgaagggctgttgaattttgtcgaagccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatg
tgatggattacatttattgatttgcatatgttgaagcagccttgcatcccagggatgaagccgacttgatcttggtggataagcttttttgatgtgctgc
tggattcggtttgccagtattttattgagtattttcgcatcaatgttcatcaggggtattgagcccacgtagccaaggcaatcgtaagcaaaagga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
985 chr8 52530068 52530244 RIP_Alu_chr8_052_01 0 + Yb8AC1415 CAACATGCCTCGGAAAGAAT AAACACATTTGCCCACACAA SINE Alu Yb8 ataggagtttctcttttctgggaatctcaagcaaaaattaaatatttgctaaggtgttaaaaatgcctaatgattgattctaagtttggggaagggggat
caaccattcctgagatgaacatattctggaaagtggaaataaattaaattaatccaattcaacaataaatgtttaatttaattcctaacaatatcgaatg
tcttaagtatattagtaacatactggatgttggaaagatacagagatgaacaaacacactcctccttgtgtgctcctactctagctgcatgaacagagga
cagaacacatcatctgtaaaaccacaacatgcctcggaaagaattgtctcagagttaggtgtaaatgtgataggagaacattctggcAAGAGGTAAGGGA
AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAG
CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAGGTAAGGGAaagtataggga
aagttattataataattgaaataaatgttccgaggtaagtcagtggcagtagaactggaaaaggagataatctgatgcatgcatggaactaaatttttag
agaattgtggaagaaggagtagcactagagggtgaatcagaggttactggaggagagtaatgataccaatagagatagcaaacacaggatgctgtgggtt
tgtgtgggcaaatgtgtttgacagatgtaaagatttacatgtgaagataaaaacaaagtcctggcaatgtccattgaaatctcaggaaggatctcagcaa
taaagactataaattttacatgaagtatgaaagctgaaggtttgggaagagctcagatggaagaggaaaaaaatgt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 495 306 NA intergenic
999 chr8 54367449 54367751 RIP_Alu_chr8_054_01 0 + 19086 NA NA SINE Alu Yg6 gtatctaggtcttgttctttcttctatctttagcgcttagcctagtatttcacgagtagtaagagctgggtctgtggaagagctaagtatgcacacagtg
ctatccattcccaggagagtccagtgcttagaaatatccctggggcccagggaaatgattatcttttctcctctaagatagaaaagatcttagaggagat
agaaaagatagtcttttctcctctaagaagaaaatttatttttatagatgcttccccttaccacaatacatcaaaaatagaaaagaagacataaaaatca
ttcaaggcaatattatcaaagaccataaagtaaaatattttcttaaagtaacaaatccttgatattttcttatgtcaggtttgactAGAAAAGCAAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAGAA
AAAGAAAAGCAAAATCagctaaaacatgtctagacagtgccaagttctccctcaacttgctcttctgaccacaaatgatactttgggtgcttttatgcat
aaactctcgcctacattaatgtttgcagtgctctgtgttcataaagttgctgcccagaaaattatgagcaagaaaaatttgaaagtgtcctgaagagagt
gaagaatcacttgattttatgaacttgctctttgttgacagagtaaaataacacttaaagtatcattcaacctactctaccaaagtgcagtacagattta
aggaaattacatttaattcagacaaaaagaagagcttaacacaaatgattcaaaactcaatgatctatttggttcaaattcattatctactattagtttt
tt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1016 chr8 56563771 56564072 RIP_Alu_chr8_056_01 0 + 3422 NA NA SINE Alu Ya5 aagggatgtaaaatgatgcagccactttggaaaaactaaacatgctcttatcatatgatccaggaatcacattcctagatatttactcaagttagttaaa
aatgtaaactcctacaaaaatgtgcacacaaatgtttacaacaactttattcataattgccaaacctggaagcaactaggatgtcctttgatagataaat
agataaactgtggtacatccagacaatagaatattattcagcactaaaaagaaatgagctatcaagccacagaaagacttggaggaattttaaacgtatt
gtactaagtgacagaagccaatctgaaaagacttcatattgcggaatttcaactatatgatattctggaaaagaatggagagaatAAAAAGACCAATGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGACCAATGGTtgctggaggttagggggctgacaaggatgaatagatgggacacaaaagattctcagagcagtaaaaccactctgtatgatacta
caatggtggatacatggcattatacatttgtccaaacccataggatttacaacacgaagagtaaaccctaatgtaaacagtaggctttcgttaaaaataa
tgtattcatattggctcatcaatgtactgcatcggtaacaaatgcatcacaataattaatgcaagatgttaataataagggaaactggcagaataaggct
atggaaactccctgtactttctactcaattttcttataaacctaataccgctctaaaaaatagtctattaattttttaaagatgtaacttaatagtaacc
a UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1020 chr8 57129885 57130023 RIP_Alu_chr8_057_01 0 - 5183 NA NA SINE Alu Y? aggcgggtagatcacctgaggtcaggagttcgagaccagcctggccaacgtggcgaaaccccatctctagcaaaaatacaataattaggtgggcatggtg
gtgcgtgcctataatcccagctacttgggaggctgaggcaggagaatctcttgaacccaggccggaggttgcagtgagcccagatcgcaccactgcactc
cagcctgggtgacaagaagaaaactctgtctcaaaaagaaaaaaaaaaaaagaagaagaaaatcaatgaatttgaacttagaaacaaaatgtatctgaaa
atgcaatgccttgaatttcttgtctcgctcctatctggtacagcattccctgaacacaagaagtttacattttttctttctgcttAGAAATCAACCTGGG
TACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCG
AGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATCAACCTGGGgtgactgcttttgcagttaagtaggtggttaataaaaactaaatttt
tctctatttgaataactatgcgtatccctgataagacactcaggcaccttggtagccactgaaatgaattcaccatacatcaaactaatagaagcaagag
aaacaatctggcaaagaaatactcaatgaaataaattccaaacatctgtttccttttatatttattaatcattgcattctcacaatatttcagccaaagc
ctggggaaagtgagaactctacctatttaaataagttcaacaaaaagcccataataaaatatttagcataagacacagatctaaaaaatgaaaagacata
gatctaacaaaactgcaattaaagaactgtgcattgtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1021 chr8 57176936 57177233 RIP_Alu_chr8_057_02 0 - pAlu8-56737468 NA NA SINE Alu Sg1 taccattttccattatggccaaaatacaaaaatttgacaaatataattggtgaggcatggggaccatggggaaatgcctaggcactcttggatattgctg
gtggaagtacagactttagggaaaataatctgggaacatctattaaaattacaaaattgctggtgtgattccatcctgtgcagctgttctcttgagcagt
ggtcatttatctctgtcccccttctctgccacctaagtgcgtgctgccacccgatggaagatttgatggacatggacatgagcctcctgaggccctagaa
ctatcttttcggttgtgaactgaaggccaacaaagattatcactttaaggtggataatgatgaaaatgagcaccagttatctttaagaatGGTCAGTTTA
AGGCTGGGCGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGCATCACGAGGTCAGGAGTTTGAGACCAGCCTGGCCAAGATG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGCAGAATCACTT
GAATTCGGGAGGTGGAGGTTGTGGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCGACAAAGCGAAACTCTGTCTAAAAAAAAAAAAAGAACGGT
CAGTTTAggggctggtgcaaaggatgaattgcacattgttgaagcagaggccatgaattacgaaggcagcccaattaaagtaacactggcaactttgaaa
atgtctgtacagccaacggtttcccttgggggatttgaaataacataaccagtggtcttacagttgaagtgtggttcagggccagtgcatattagtggac
agcacttagtagctgtggtagaagatgcagagtcagaagatgaagaggaggaggatgtgaaactcttaagtatatctggaaagcggtctgctactggagg
tggtagcaaggttccacagaaaaaagtaaaacttgctgctgatgaagatgatgatgatgatgatgataatgatgatgatgaagatgatgatgatttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1053 chr8 61367551 61367857 RIP_Alu_chr8_061_01 0 - Ya5ACA1766 CATCATGGTATCCCAAGCCT TTCTTCTGGGCAGTCTGTCA SINE Alu Ya5 tttgcataattatttacaacgttcaggaaacctcatatatattgacttttatttgtttgacagttgtgagttgatgagagtgctaatgtcttagtgaatg
aatgtggatgaaacaacatgtgtgtgcagttctcagaataaaggcacacgaggttgttttttgatttacagtcagggcttctgtatatcaggcttccttg
ttgatggctctgtgtgaaacccaaaagccccccatctataggacattttccaatggttatatgatttctaaagcctgtttctcatggttataacattgaa
gaattttgagtgtgggtatactattttcaaagttctatgttccttgagcacaaagaccaattctagtcatcatggtatcccaagcctttAGGACAGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGGACAGTGTCttccagagtacctaatcaataaatatcacctggatgaatggatgtatgattgagcatgctgaagtcagtaaagcttaggtaga
gcagtgtcgttatagtattgacagactgcccagaagaaccccaggacttaagtgtttgtattctcattgtgtccttcaatgtgcagaaagctcatatctc
aaaagatcttctggccttcttcctatgacctcagctccatgatggacccgctgattacctctgtcactcttgaaatgtaaatatcatctcctatttatgt
gatcatgggttaaggaggcttagagataactagtcccaaatgcatgtgggtgtctaaaaccagactatcttgatgtcaagtacctagagctactgctgat
taccag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 471 154 NA intergenic
1055 chr8 61689350 61689351 RIP_Alu_chr8_061_02 0 + 30856|pAlu8-61249965 NA NA SINE Alu Ya4 ataactgtaatgttcatagcattgacttttagcagttgagaagaaaagccacattttagctacctcatatttctcagttctaagagaaaactaaaagtcg
cttgtttacaagataccctgctctgtagcatctgttcaagatatttaaactgtccaaaatactggtcttacctaatttttatcatgccaccaggtggcag
catgttatgtaaggaagtaatttaaatattctattgaagatcatttattttcaatattttgccttaaaaactgcccaaccataataaaaaataaaatagt
atctcatgtttccctttgcctgcattctctccagtctattttaaagaccctgttagcacaatatccgtgagacctgccttaatAGAAGAATGCAGGGCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAGAATGCAGGGCTGagtttttttcttccatctttatggagatttgagccattgggcttagattctgccaactaaatgattttattccta
cctaaatagttcctattgttcagcaacaatagtcctcctcatctttgtgtcttccatggtacctacagaagttctgaatatgtggcaacgatttttttct
taatagagacaggggtcttactacattgcccaggctggtctcaaactcctgacctcaagcagtcttcctgcctacgcctctttcagagtgctgggattac
aggtgcgagcctggccagtgacaatagttttaacaggtgcccttgggtaaatgtcagtgatatgtaagatccacattagcgtgtgtatttactgaatgtt
tatttgaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1066 chr8 63092704 63093009 RIP_Alu_chr8_063_01 0 - 239003 NA NA SINE Alu Ya5 aaatctataaaagtatcccaaatacaatttctactaatttgcagttatgccttttgaagctgcctttgtgtgccagagtattctttcagtgacttttttt
ggagcgattttgaaggcaagagaaaaaaatatctactcagcactactcagaattcctttagttttattttcagtttctcaccatacagaatcccctccag
ctagagcagctgtaactaaaagtctgcttgatgctgcactggggttttgctttctcactctcctgtgcccacttaggtttaagatatggggctcaccatt
aaatgttttctgaattagtaactgagaatagattaaatgaggaaatgaaattattatgatgagagcatgggagagtggttaccataaacaacAAGAATAT
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAATATatggacatgactccagcaaaagaaaagggaatatatagctgagattataacagtgagagatggcagaatatgaggtgcgtgttaaaa
atacgactgtcttgagatccataagatttggctctgagagttgtgggaatctctcaggcgcacattcttgacaataaacaattgatgtttctggtatttt
ttctttgttataaaatttactcagtcgacactatctctgggaagaatacataagaaatcgtctctgtttttggtatacaatctagtaagaagcctgtcaa
gtatacagacttacaatcagaaagacccaaaattgttttttaatctaacttgttcattttataaataaaaagactggagtataaagaggttcaacaagcc
catta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1075 chr8 64307428 64307669 RIP_Alu_chr8_064_01 0 - Ya5ACA1770 CCCCAAGTAGCCTGTCAAAA CAGGCAGCATCACTACCTGA SINE Alu Ya5 gtattgaaactctaaaagtaatcacgaatctgtctatttatttttccagttgtgacaattattgctttgtttaatttcaggtctctgtcaatgttttcat
aaattgacattttcatcattaagaaatttctttctttctttctgttattattccctgtcctgagtctaatttgactggttttttacagccactccagcta
tccctacacttcatgttttcatgctacatttttccattctttttttaacctatctgtgtctttacataatagaaactaaccctagaataaatactactct
aatctgccctaatatatcttaatagcaagcctcaaaaaaaatcaagctaatccccaagtagcctgtcaaaataaaattcaaatattttttAAAGGAAGAC
GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT
CCGTCTCAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAAGAAAGGAAGACaacaaccaggaagtcaagcacttaaatgccaactaaaaattaccagac
atgctaagcatcaagaaatgtgatctctaattaggagaaaagtcagtcaacaaaaatagacccaggaaatgatggtaataataaaattaatgtataagga
caaattcaggtagtgatgctgcctgtataggctgtgctagcctgatcagccacattgttttatttagtcttatctcagtatggactcttcccaaaagtat
tcacatggattatataaatgccccatctggctgtagcaacgcctttccagagcccacagcctcacagagatgtgtctttaacacaccagtcagtcatccc
ccaggtattcaaccaaatagttatgctgttagtcacagccca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 473 222 NA intergenic
1115 chr8 69580238 69580543 RIP_Alu_chr8_069_01 0 + Yb8AC1432 CAGTAGCTGGTGGGTTTGGT TTCTCAGCCAGTCATGTTGC SINE Alu Yb8 ggtgatctgcctgccttggcctcccaaagtgcatggtgagccaccatgcctagccccaaattgattttcacaggggttgtgccactttacattcccacca
gcaagtatggagggttccaatttcttcacatcttggccatcatttgttatggtttgtctttgaaattatagccatcttcatgagagtgaagtagtatttc
attgtactttttatttacatttttaaatgactaattatgtcgataatgtattattgaatattagatcattattacttgaattttgtatcattctttcatt
cactcaaagaatgccagtagctggtgggtttggtggtaagaagttgaacaaattctcttttgattgctttcattttctcactgAAAGAATGAGCAACATG
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCCGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAA
AAAAAAAAGAATGAGCAACATGactggctgagaatcaggcaagggagaggtattgaagttaactgaggaataaaaatatatctgaaccaaaactgaaaaa
ctgaactagttggaattcaattaatctagcaaatatatatttttttactttcaaaagttgttatgactgtatcatgcatcaaaatatataaagaataata
taatgaacacctaggtaactaccatgtagctaaaaataactcatcagtgaaaccaacctctattgcatggtagccaactccatctctattctgaatttta
actttaaccccttggagtgtttttgttttttttgtttttggttttgttatgttactacacacacatacacacacacacacatgcacatgcacacacacac
actca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 0 420 98 NA intron
1134 chr8 72077133 72077134 RIP_Alu_chr8_072_02 0 + 16002|pAlu8-71637776 NA NA SINE Alu Yb8 tcagagaatacatgagatcagccttaaaaaggtagattagtttgggttccacttttatcatatatatatattggaaaatatctatcagaatgtttcatat
gtttaagtacaaatgatatgatgataataaatcaaatcttccaagtctttaattgaatactggctatcatgaggtcgtaagagaaattccactactgttt
tcaggccattgtgataccatataaggaattggctgtcattttagtaaatgtagttaattctatcatgtcctaataggctgggtcagtggtcaaattgttg
gagagattggggttgacgatagtctataaactacgaggaagggctcaccatatgtggtaagagttttgtttcaaataattttaatctAAAATAAAAGCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AATAAATAAATAAAATAAAAAAAAATAAAAGCTAagccgtggtaggtttttgttttttttccgaaataattccagttgtgtttatctatattatttttct
tttagtatgttctgtctctcaattaacagcatagtatattagctttccaattctgtttattgtatctttaagtaaatttaatttatataaaatagtctaa
aataaagggcaaaacacatacattcaacaggcaacttctgttttatacggtctccctttttactcttttttattgatactattgtaactacaataaaaac
acacttgcctttaaatatgccattcggtgaagcttcacaaccactacaagtcctagtgaaaatgctgaaactcatgctttgagaagtgaatgatgatcac
ctaagctgtaaaaaaactcag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1136 chr8 72319394 72319395 RIP_Alu_chr8_072_01 0 + EYA1 NA NA SINE Alu Ya5 agcatcggtcctaatacagtaagagtctgacataacagtctcaaagaaaaaaagaatctgacataacatatgcaagtgttacgaattatgttggacatat
cttagtggtgattatgtaactgagaaatatgtggcttctgataatcaacaaagtttaagattcttgaaatcaaattttaatctttactactggtcatgta
ggatctaactctgaaaatcaacagccaaagtaaagcaaaatagaaatcccataaaggcaaaacacattgccatattaccaacaaacctctgtctcactat
tccaattatacattaaaaaataatatcctatctttattttaaaaccaatcacctattttcagacatgcaaaaatatgtattaaaaattagaacAATAAAT
GTGTGTCTGNNNNNNNNNNAAAAAATAAATGTGTGTCTGtctgccaagttgaaaatcatttcttccattcgcagtccaagggaaactgaagtgggtggat
cctaaaataagaatatgacaggtgaagaacatgtatacttcaggttacatgaaagagagtgtctcattaagaggaagcaggcattgggagaggctgaaag
caagagacacagagagagacttgggcaacagctgcttattttagtgtgcatgacttattctgtgtgcaaacttcagggacttattttataaaaagagccc
caaatgttgatggtgctttacacactgaagaaaaaactctttctttacttttttaaaatttaaaatctagggttacttagacatataaaataaaggaaat
tcaactttttatgtctatttcag Other - Abdelhak S, Kalatzis V, Heilig R, Compain S, Samson D, Vincent C, Levi-Acobas F, Cruaud C, Le Merrer M, Mathieu M, Konig R, Vigneron J, Weissenbach J, Petit C, Weil D. Clustering of mutations responsible for branchio-oto-renal (BOR) syndrome in the eyes absent homologous region (eyaHR) of EYA1. Hum Mol Genet. 1997 Dec;6(13):2247-55. PMID: 9361030.
Mutation screening NA 0 0 0 Brachio-oto-renal (BOR) syndrome exon
1139 chr8 72713972 72714293 RIP_Alu_chr8_072_03 0 + pAlu8-72274503 NA NA SINE Alu Ya5 tctttcactcctccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatcataacaataaaaactaaatctggaattatgctcagttaatga
cagctacttctgttcatgtagttttagatgtactttattgaattacttgtgttgttttttgtaatggacatatatccttttatctgaaattatgttagtc
ctctttgagaattttgacagaagtagggtgagttggataatgcctaataaacgaattttcctcatttccattcagcaggacctgtaatctctgttagcag
tggagctgctcagcaaaggttaagcttgatagtgaacaacctctttatgtacaaaaccgtatttggtaggcctcattgctggtaataGTTTCACTATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTGTTTCACTATATCttgatggatatttaagccacattgattttttggtatgggctgtttggaaggaatgtccgaagtaac
tatagatgcttagccttctttttcaaagtttctagcacctatgtcccacacacattaggaactgaatgtttattctactgaactgaaataatagagtttt
tcacatatttgagacttacctgttaaagagagactttgtttttttttgttttacatcagacagaagtataagaaccatgggggaatgttgttggaaggta
gatttgactcaatataaaaaaaaaatttagccattcagaaatcaaacaagttgcttcagaggtgaaatagtctccactgcaacatgttcaagagaatctg
ggggcttatttaaaaggtcat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1161 chr8 75537901 75537902 RIP_Alu_chr8_075_01 0 + pAlu8-75098532 NA NA SINE Alu Ya3 tttgacacagaaaccactaagaagagggtaaaacaaaaattgggaatgagaatcctagaattttttttatacttgaatgatttcaaaagatatgccagca
tttaaacaagcctttaagaatctagtagattagaaagcatttgagtgatgaagtgacaaggacgtaagttgaaatcaatacaaatacaaaacctgatgaa
ttgtttcattcagaagagatcaaattattaaaagatcaagtgcaaagggaaaagtttatagatattaatgtgttctgataaactaagaaccagacagtac
atgaaagcttagctttagggtggatgacattgcaagtgatatgtaattaaggcaataagttacggcaaatgagtaaataacatttctAAGATTGATCCTC
GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGAAAGATTGATCCTCagttgtgggctgaaacaaattgatgtagcacagtaagcatgacttcaagaatattttaggataggtgtggtggcttatgc
ctataatcccagcactttgggaggccaaggtagaaggattgcttgagcctaggaatttgagaccagccttaggaacatagggagaccccatatttattaa
aaaaataaaaaaataaattagcgggatgtggtattgtgcacttgtggtcccagctactcagaagggtgatatatgaggattgctgcttgagcccgggagt
tctaggctgcggtgagctatgattacaccactgcactccagcttgggtgacagagcgagaccctgtctcaaaaaaaaaacaaaaatagtattttaacaga
ggtgcta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1165 chr8 76037863 76038186 RIP_Alu_chr8_076_02 0 + Yb8AC963a TCTCCTGGTGTAGTCAATTCAGA CTGCTTAGTATCCCAAACCACTG SINE Alu Yb8 atcccaaaccactgaattttatcttgagtatttaatagttaatcaatatggcatcctcattataatagcaaggaacaaggaaaggaaagtaatttataat
aaaactgcatttctgaggccgggcgcggtggctcacgcctgtaatcccaacactttggaaggccgaggcgggcggattacgagatcaggagatcgagacc
acggtgaaaccccaactctactaaaaatacaaaaaaatcatccgggcgtggtggcgggtggctgtagtcccagctactcgggaggctgaggcaggagaat
agcgtgaacccgggaggcggagcttgcagtgaagcgagatcgcgccactgcactccagcctgggagacagagcaagactccgtcttaaaaCACACAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTACAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAACAAAAAAAACCAAAAAAAACCACACAAACAaacaaacaacaaaaaaactgcatttctgtcagttaatactctgaattgactacaccaggagaaaaaa
tgaagtgtttcgatgattgttgaacatatttataataaaacatttgggatgaagagaataacaacaattagaagaaaagtgaaagtgtcagaaaaagtat
taacaaagcaaagtaatttgtatgtaataagagaaaaatgaaaataattggggtaagactattgttccaagaaaattaatagctgctgaaggggagaaac
aaggaagtataatattcttgcaaatatactggactttattttcaaatttaagcatcaaattcttgacattatgttacgagacaagcttttgatagcaaat
atttttgtctaaaatcacaccat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 804 471 NA intergenic
1165 chr8 76039503 76039819 RIP_Alu_chr8_076_03 0 - Yb8AC963b GACATCTTAGGATGGAGGGAAAT CCTATACAAATTCTAGGTCAGACAG SINE Alu Yb8 aaatcgttactttttttctgttactttttaatcttgacaaagaaacctgtcaagattaaacattctacaaaaaaacagttttaaagttggcaaaaaatat
atatggcacttttaagatttttaatgaaaaatttgaaaattgtaagcacactgagtggagtattttgaaaaatctcattaaaagaagaaagttctagttg
acaattatagaacagcacaaataacaaattgtagtgagccccatactgctggagaaaatttaatattataataatccaagacattattaggacatcttag
gatggagggaaatacaaattatataatttctgtgcctctgttatgatattttgttcaatatttgatattatatagatttttgatttaattAAGAAACAGA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAACAGAattaatatgtgaaattgtttgacaaaggtttttatgtattaaaatatatcaatagtttcttttaaatgtgtaat
gatatgcagattttcttaaagtgaagaaaattaccactggtttatcaataaagttgttactttaaaaatgtctgtctgacctagaatttgtataggtttt
tttagaaaattagatgtgataaatttataaatattggatagtaaataatatgttctcatgtggaggctattaaaaaatatgatctttgtacttaaagatc
catatgaacttaaataggaggttaggatattaattaatttgaaatagagttggaacatactagccaacttttacagaaagtgttaatcgagctaaaagat
acccttgagagcaaag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 606 280 NA intergenic
1167 chr8 76289457 76289767 RIP_Alu_chr8_076_01 0 - 79754 CTGACAGACACCTGAACTCATCC CAGCATAGTCACTCCTGTGGAAGAAC SINE Alu Ya5 ctgtgttggataggcctgagccagaattatgctgcaggtgaaaagagggaggcaaacttctcccttcatgtattattttgtaactgatttacatgtgatg
tgggatgttttctggtcagaaagtaattggacgtttccattactgatattcaggaatatacaaagaaggctaatgaaacgttaaatttaaaggagaaaca
atggatttctgagagaaaatgcaccacaaaccacagccaataatattttagcatattgcttgttaagtggtgggtctgacagacacctgaactcatcctg
accagacagctggttgatatttttgccatgtgagaaattgatggggtcaggtacaaaggcaacatgagtgcttcctccaatatgttGAAATATAGTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAATATAGTTTGAatagacataatgcataacctgctggttcttccacaggagtgactatgctgatattcatcattaaagaggttcagaa
attatatatggtaattttaatttgtaccattgatgccaaagcacagtcatattactgcatagaaagaaaaataagactatttctctaattcttgctcagc
ttccataggaaacatgcacagagaagcaatcaagtagagtgtagtggggtaaaacagccctcagtttgagacagttttcctaattgataactgtgtgtga
ccttagacaagttatatatatttgctaagatatttcttattggtccagtgaggatcatatacctacatcataaatatgctgttaagacaatttctgccat
gtggtatatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
1219 chr8 83167366 83167672 RIP_Alu_chr8_083_01 0 + pAlu8-82727897 NA NA SINE Alu Yb3a1 tttctcagctgtgaggaggtctaggcctcagcaattttggaaagtcactgctgtcaaagagtctatttgagattgtagagtaaggatagattctgttatt
tcttgcaaattgagaaaccctttgagagtttgtggtagtaggataatgaagtagataaacctgctattccagtttctgtagcagtagccactcgtaatcc
tataagtagggttattagttttatggccctgcactgatggacttgagctttgaggggcacagatatgctctgctttccaccaggttagaagttaggataa
tacatgttacactgttaacttttagcaaactttacttttgttgaaaactttgtaagtttgggatttcaattattctttgctattAATAAGACCCCATTCA
GGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGAACTTTCGGAGACCAAGGTGGGTGGATTGCAAGGTCAGGGGATCGAGACCATCCTGGCTAACACAG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCAGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGTATGGCGT
GAACTCCAGAGGCGGAGGTTGCAGTGATCCGAGATTGCGCTGCTGCACTCCAGCCTGGGCGATAGAGTGAGACTCTGTCTCAAAATAAATAAATAAATAA
ATAAAAAATAAGACCgtccatattaacttagaattggtatagatggcaccttcctgattctgtaagtactttaaggtttgactgagtgaaaacagcttgc
acgtttgagcagacctcactggacagcctcactggaccttttccagctcctgcagtagctcattcactatcctgcttcagagacttcgtcttaccatttt
ctttccctgagacatttctctctctactgtacctttttgctttactcaggtattcaaaggattggatgaggcccaccacaatagggagtgcaatttcctt
tactcaatctactgattcaaatgttcatttcatctaaatactctcccacaggcacacatcacataaacatatgtgatatgcatgtatatatacatatat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1256 chr8 87965213 87965529 RIP_Alu_chr8_087_01 0 + Ya5ACA1793 TTTTTCCAAAAATGCTGGGT GTTCATTGACTGGGTGGGTT SINE Alu Ya5 agctgagaagagaagacaagggtaatgagaatggattcttggccaacgtcaatgcttaacggaagaagatagcattcaatggagcagtctaataatggga
aagcaagaaaggagagaatggtgtcacaaaaacccagtaagaagaaacttcagtatcaaacatcacacagggcgtagtaagatgaagactgaaaggaggt
tatttgactagaatctaaaaggtctctgatgatcttaatgaaaaaaatttcaaaaaatatgaagaagattaattatagtagatggaagagtaaatttggg
ttggggaaatagaaaagataaacgtagattattttttccaaaaatgctgggtataaagagaagttattttgataatttgttgtaaaacaTTGCCCCTTTC
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAACAAAACAAAACAAA
ACAAAACAAAAAAACCTTGCCCCTTTCcgtttcatgtgtccccaccactcccccactgcccccattttctcttctcaggtaatacagttctattttaaca
tcttaacccacccagtcaatgaacagggacaatctaggcccacttgggaattgtctctgtcagtgtgccagcatttattaatagaaaactttgactgggc
attattcttttgcctctgaaggtttatttagtcaccctttttgggtgccttatgtctatctaatattatattatttaaagaaaaattacctttgagattt
tagaaaacaaaaactagttgaaaaatgggtagatacactatgaaccattaacataggtatgtttagtgacctcactagataggtttagacttattttaaa
acatactcctccctgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 492 165 NA intron
1267 chr8 89461334 89461631 RIP_Alu_chr8_089_01 0 - pAlu8-89060843 NA NA SINE Alu Ya5 gtaggaagaggaatgagagatacctttagaccaaaaagtcagtcagtgatggaaatctgaaaccaaaagaaggtgatttgggagagggaggcagacagga
atgggtaccggtaaggtgagaaataatgtcacctttcatagtgagcggtttttttctccaaagtaattaatgagaatcttaattttttgaatgaattctt
tacttatgtaaaattatatcgaaatgctatgctatttatcagcctagtgatggataacatggcaaaaaggatttaagggctcaggatcatgaaaatttaa
atatagttgtttgaatatatgcctgtcttaaggtcaataacaggaggatacttgctgatttttttcacacaagttctgctttatattattAAAAAAAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATTGgacagtgacatttgacaattccataaaacatgcaacaatttagtggcatgtgaagtgctctaaaataagaatagacgcatagcaaaaacgtt
atattgcatgaaaaattatatatatgtaaactaaatataaattatattacattgtttcttggagttacttgaataattttcccattatttcttgagagga
atactgatacattaattaattaatgaatatgaaatataatccagtcttaataaatctagttacagtacaaatgcataataattctaataatcacctcttg
gtattaatatgactcctgtgcttacaggtcttctttggattgcacttttgaaacctgatgaagccccactttcctatggggtaatgaagtctaacatg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1283 chr8 91584606 91584859 RIP_Alu_chr8_091_01 0 + 238711 NA NA SINE Alu Yb8 tcacacataaacacacgcacaagtatagagcccagctgctctggttgaagtggaggggacccacagacttcctgctatcctacccaatccctaaaatgat
ccctgagacaccaccaggagttccagggttccacagaacacagtttgaaaactcccattgtaaggtaatttttaagaatgctaaagtaaatttaaattgt
atgactatcagacaaaagctggggaaataactaatggatcaattcaaatggtttcaaaatacaatcatgtcaagataacctctttatttcctgtcagaca
ggcatcatgctagtcctcatatctttgtaatcccaggaacatcagactctaaggagcggccatcccatatgtcacctcatgcttGAGATACGGTGTTGGG
GGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCC
AGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCTCCGGCCT
GGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGATACGGTGTTGGGgagctaactgttcagttacttcacttcctct
agctccatagttctcaacccttgctacacataaagtaattgatgaactttaaaaatatatatacacatatacaggtcacacccacgaacaaatgattcag
tcagactctggggactgagcctgcctggccctgtttcgagaacccatcctcaggtgatatttatgtgaaaccagagtacagagccaccaagaagaactcc
taatttcctttttctgttttcaaaagaatatatatctagttgaattttgactcctcaaagttgttttcctctaaccatgcattacacagggacccacagc
ctatcagacattatgccacacctaaaatgaattaactcctataaagtaaaaac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1288 chr8 92222045 92222356 RIP_Alu_chr8_092_01 0 - pAlu8-91821562 NA NA SINE Alu Ya4 atgaggtcatatggattagagtgggccacaatccaaggactggtatccttctaagaagagaaaacaaagacatgtcctttaagccccagtttgtgatatt
ttgctatagcagcctcaggaaactaataaaacaagcatcactgtttcctgcactaactgaacaaccgacagtgttgccataaattgtccagtgtccacta
aaggccatacttcagatatgttattctctgaaagacagatacaaataaaagacattttatttcagatcatccttgttctcaaaggcttgttcattcaaaa
tccaattctaattccagcaataaataaaaatgtcagaaaaagtgaacacacgataaagaaaaggtagaagaacacccaatgattaaaAATCACATATTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATCACATATTGAagaatattcatttaaggaaagtgcttaatatataatgttaaatgaaaatgacaaagcaagacacgtatttctttat
gcagtatacattgaatttttttaatgagaatataaaaatgagattcttgaagaaaacaataaagtgtagtctctggaaggtaaacttaaagacaccttac
attttactctttctatacttatttacttattttctacaatgaatgaattaccagaaaaatgctacttacaaaaggataaatgaagacaacatcttaaatc
ttaatacccattcattcaagaagcagaggacacttgcaaactaatacaataaataatttggtatgtctcagacaggaattaggtatcaaaaaattgtatg
tgagaaaactg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1316 chr8 95863897 95863898 RIP_Alu_chr8_095_01 0 + 18601 NA NA SINE Alu Ye5 tttgctacataacagaatgccacaaaacttagtggcttacaaacaataaacatttgttattccacaccatcttgagaattagcagggttagggtgctggg
gaggattgttttggtctgggccagctccactgggactggatagtctagggttggctatgtgtcagctgaggggatcaaatttacttggccctctgtctct
catcatctagcaggttaacttgggcttgtttacaaggtagttgtagaattcccaagagcagcaaaagagggcaattctcaatgtcaagcatgttttaagt
cactgcttacacggtgcttactattgtcctattggccaaagcaagtcacatgattaatactagcattccctccaagaccatgacAAAAATGGCCACAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
AAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
ATGGCCACAGTAtaaccagtctattccatggatggaaactatgaaataactacattgaaatttattaaagacataaaagaagataagaaaacatgaaaaa
gtgatgaaatactatcaaaaaagaccagaaaaatatgggaaaaaagacaaaaagtgtttctagaaatttaaaattggtttatagaataggtatatagaaa
caagaatagattttattataatgtcttgttactataacatatcttctattttatacaaatagttttctttagatcacccttaactattacccattaatac
tttttgtaaattctgttttctattgttgaacactgccttgtgttatcattaacaaaagaggaagttacatctctgtatgatttaccacagtatttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1326 chr8 97167264 97167601 RIP_Alu_chr8_097_02 0 + pAlu8-96766781|17182 NA NA SINE Alu Yb3a2 aaatacgctcaacctaattctgttttattgcgtggttttcatgggtcacctgacgtgtctatcaaaggagtggaaggtagtttcctcaagaatctatgag
ccacaatcacccacagccacctctcagtgactgtcacttgtgtgaatgagctgggacccaggctctgggtcattccactgatatggcttgagaagcacac
aaaatgctgtctttcattcttctgccaggactcctggcccacagtcagaatatggccttctctgcactgcagccactgcacttgcattgatgataacaag
ggctatccctcgcagggttcctttcatttgcaggtactggcctaggtgctttgtatacgttctcttgtccccataataataccttGAAAGAGAGGTATTA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAGAGGTATTAttgcccccattttgcagatgagcaagctgaagctcagaaaattgaaat
aactttcactaattcagtccacgagtacttatgactctgctaggcattttgccagactctcaggatacagagataaagcaccaccaccctcaaggtgctt
gaggtctggtgagagttccagacacagaaacagataaatgtatcacaggaaattaaatgatagaactacgaacagggtattgtgggagcagagaggaagt
gcaaggaatgcggggagaagaaagttcagaggaggcttcctggaggaggtgacacacgaactgagtcttcaagtctacataggactcaggtacagagatt
gaggggaggaaaagcaattcctgggagagagcaaggt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1330 chr8 97657823 97658122 RIP_Alu_chr8_097_01 0 - Ya5ACA1806 TCAATGGTACAACCAAACAACA CCCTACTGCCTTCCAACTTTT SINE Alu Ya5 gttccatcaagcaagaaagcaagatgccagcaacagatatggaaagttcagtcttctctaggaaaatagctcatttgtgtacaagtattaaataatgagt
tgcaccaccgttccatccacctagccagcacaatcactgggatttctctgatgtattaataaactgcagaggattaaaagtctactacatctcaatacat
tcttgggacaactgagaaatgtaaatatgggttgaatattagaaatgtattcaccattaactttcttaggtgagattgtgttttctcctttttcccaggg
gataaatgctgaatcctcaggggtcaagtatcctgatcactgaaatttactgtcaatggtacaaccaaacaacaaaaaaaagctgtatatAAAGAGAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAGAATAataaagcaaatctggtaaaaaaaaacaaaacaaaacaaaaacaaactaccaattattgaacttatgtggagaatattgtcctatgctttca
agttctctgtgtatctgcaaattcataatttaaaagttggaaggcagtagggtaactccagctgaaaaaacttcaggtgacaccagagctggtattaatc
actaatgggaccagaaagtaccgccttcataccaggtacaagaatgaggtgaaatctgctaaaaattatactagcctgtagttagctgacttaaataaat
tgggcccacaaaagactgcatgatgtatttgtgtgtggggatcggggagggtggtaaccacataatattctaggagaaaagacagctatgaacttgaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 500 191 NA intron
1337 chr8 98664582 98664907 RIP_Alu_chr8_098_02 0 - pAlu8-98264106 NA NA SINE Alu Yb7 cctgaatttctagattcatttattattttttgtcatgttcattttctcttcttggactaatagtcatcccacttttttttgttttttccttgcctaaatt
ctatgcattttaaaaaaatggatgaaccccagtctcacagttatgtagttgaaggaagtaggagtattttaatagtcttttaaagtaattgggggatatt
ctttgctattatgataaaaccaatggtagcttcttaaaagttagttgcaatataaaatctgaaaccacaataaacagagtaacaagctctgttacataaa
acccattggcctgtcttgtactttgaattagtcttttacctatgtgtgatttggtgacatcttgcactggttcatatgcatttaaaAATTTATTATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTTATTATTTTTtttgtagaaaggggtcttgtcatgttgcccaggctggtcttgaacttttgggctcaagcaa
tcctcccattttggccttctaaagtgctcaaattatggacatgagccatgataagcatttttagagtcaatttaggcattagaaagccttctctgaattt
gctagaattgaaatgctgtctaatgcaactttttgccataacaaaatatcctatatctgtgttgttctatatggcagccattaggcacatgtgattttga
caacttcaaatgtggccagcatgactaaggagctgaatttttaattttaattaatttaaatagccacatgtggttaatggctagcataatggatagtgca
gctctagaatgaggtgggttctcct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1339 chr8 98852637 98852956 RIP_Alu_chr8_098_01 0 + Ya5-MLS23|11223 NA NA SINE Alu Ya5 tgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaaccggcacattgtgcacatgtaccctaaaacttaaagtataatttaaa
aaaattacaaaaaaaaaagaataattgtggaagttgcgaatcttacaacctctgggataacggctggtaatatttagaattccagcccctctcattctaa
cttggtggctggtggccttttattcatttcacaaggacagtttagctttgaggaggggctattatttaaattataaactaaattccttcctaaggctagt
tggggctatgcccagtaatggacaaggagagttcagagattagaggcaagatagagttagttagagctgatgtctttcacttgtcatAATTTCCTTAGTC
GCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATTTCCTTAGTCataactttgcaaaggcagtttcatttgttcttttgaagccaattcccatactctcttgcacccaaaca
aatacaactccaaagacattgacactaagctttatttaataacctttaactgcaatggcatttttctctctccttttttttttgttatccagttaggttc
cctctattctttattttcttatctagagaaatttggcaactgtctgtaagttcagatcttgaacagtaagatttctaaaatataaaattcccttgaatca
atgattgatttgcctaataaatatgaaattctggtggggagggaaaaaggaaaggtaactatgggagcttgctgggagtttaattgttgaaaaagtctca
ttcaagataccatttccta UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Selective PCR with subtractive hybridization|Trace comparison NA 0 0 0 NA promoter
1343 chr8 99426011 99426321 RIP_Alu_chr8_099_01 0 + Ya5ACA1805 AAAAGGCAATACATGGCTGG TGATGGGATTAGCACCACAA SINE Alu Ya5 gcaaactatcatctgacaagtccttaggaaggtactgttttcatctgaagataaattttacctaaattctaccatgtttttcaatgctgcagtcctcctc
acctggaatccttccatccttggctccctgtatctgcaatgcaaaagaaatacaaacatttacctatagcaaaactctgagaatctccacaaagtcaggc
tgccaggaaagcctaagagcctgggaaggagaaggaggggacaatacattctgcatggtttaggcatccttgctgcccagtgccttttaatccccttggc
aaatggcctgggtttattttttagagtgggttgggcaaactcagatggaaaaggcaatacatggctggagcacaggagccatgagtAGAAAATATGGGAC
CCTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAATATGGGACtctccaaattctcaccttgtggtgctaatcccatcacctatagtaatgttgcaaggcaggtgaaagcttgaattct
atctccaaggttataaaggaggtataaaataaaacatctatcaaatattttgagacccttagaagcacagaatgttatagctgaaaatcctaggtgtctc
tgagaatgtggaaataggccattttagcttaaaacaaaacaaaagattgcaatctactgagcctgaagtggtttgagatctatgtatgcttaatctagca
atgtatgtcccaaatactgcaggtcctcttgactttaatcatggaaagatgatcccatattcattgagaagaaataaataaagcagcctctttaacctgc
ctttcccaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 55 412 88 NA intergenic
1381 chr8 104452089 104452395 RIP_Alu_chr8_104_01 0 + 4197 NA NA SINE Alu Y ttcctcattcgtttatgagagtagcccaggaggcatctacccctcccaacccgccaggattgctgagaggacagagtacgcgtgcaaggttttgcaatgt
gccagagcttagtaagtgttagcacttatgaaaacagcgtttatatatcatttgggtcatgggactcttggaaaacctgatgatacctatggtttcttcc
tgcctccgccccacccccaccttccagcctccaaaaatgtcacctccaaaaaacaaataaggcagggcgcggtggctcacgcctgtaatcccagcacttt
gggaggccgaggcgggcggatcacaaggtcaggagatctagactatcctggctaacacggtgaaaccccgtctctactaaaaataAAAAAATTAGCCGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATTAGCCGGGcgtggtggcgggtgcctgcagtcccagctgctctggaggctgaggcaggagaatggcgtgaacccgggaggcggagctt
gcagtgagcctagatggcgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaacaaacaaacaaacaaaaaacaaataagactcgcc
gacccatgccatagattgacgacccttgaaggtggctcgtgtacccaggttaagccacgtgtctctaaaatgttcatttaggcggcgctgtgttacctgc
gggaatccccgacctgcggctcctgaccacgggccaccccgcccagaccctgcaggcgggctctccacgagggtctgcgcagccccgcgggggtcctgac
aggccg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA promoter
1395 chr8 106250586 106250899 RIP_Alu_chr8_106_01 0 + Yb8AC1440 AAACAACCCAGGCTGAAATG AAAAACCCACTGATTGGCTG SINE Alu Yb8 atttaaaaacctaaaagtgttttcaagtttcacttatccttaattcataaatttgctttttttcttataaaatttatagccatataaccaactatatctc
ttattttgggggagaaataaaaatgaagccgagagataacttttccactaaattataacagttgtatagaatttcatgaccaggttaaaaatctaacaag
tctggctccagagacttttacctaaatcatttatgaaaacaacccaggctgaaatgagttagcagatgcaacaaaaattatagtactctcaaaaccagga
gaaaactaaacaatttaaaataaattattattttaaatatttttaaatgattgaagatacataagagggaatagaaatcttaacgAAAGAATATGATACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCAAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAATATGATACCacaaaaaatactagacagacttcaaacaaataaggtagaacatctgaaagtaaaatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatataaaattaaaatagaaaatgcaatggactgcttaagtgatagccaggcacagctaaaca
gggggtgagaaaatggggagacagatctcagaaaaagtcctaaaatgcaaccaagagcaataagaggttggacacatgaaaaacagttaagtgacgtgga
caataaaatgaaaatattaagcattcatctaagtttgtgtgtgtgagaatagagagggaagaaatatctttgggaaaaaatagcagcaaatatccagaac
tgaaaaagacatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 0 980 652 NA intergenic
1399 chr8 106733692 106733693 RIP_Alu_chr8_106_02 0 - Ya5-MLS41 TGGTTCGACATCTTTGCATAGC ATACTATTTGGTTGACCCTACTGTTG SINE Alu Ya5 ttcttgaaagactgcacaagctaaacgtagctgacctaaagaataatcattcttgaaaatctttactaacaatgtataccagacaatgatggtgagtact
agatttctaaaggaaaaactggcttaatttactgtcattgaatttcaataggaggtagctagaaatacatgcataaatagatgggaatagcttatctata
tgtatttctgatccatttccttgattggaatactcttgcttgcaacaccatggtatactatttggttgaccctactgttgtttgacagtcttcacaggcc
tcagacagcctcatgagaatacaacttctctgaagtactactgtatgtcaggcatataaggtgacgttttaattttaaaaataggcttcaaaaatGGGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGGGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCC
AGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGA
GCGAGACTCCGTCTCAAAAAAAAAAAGGGGCTtgacttctacatcagtggtaaaatgaaaagcctccaatttcaggtattagagcaaagagtagaggttt
ctgactgaccttcccctagtgaagagctgaaacagacactgttactatttaccagtaaagtgggtccaaaaagaaccacccagtaatagcaagccaatga
cttggcatggctgctatgcaaagatgtcgaaccaaaccctgtggtttgacaacatcttttgcatctatgtaggttttgtttcaaattcttgtatacactg
ccatgctgactgatgcagcataatatatgctatgtatatatgcaacatttcaaaggaatcctcttcatctagattctctggtattttaaaaatctcacta
aggaatgttacattttttgagacatgg Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.PMID: 15673711.
Selective PCR with subtractive hybridization NA 0 0 0 NA intron
1399 chr8 106739710 106740014 RIP_Alu_chr8_106_03 0 + pAlu8-106339227 NA NA SINE Alu Ye5 cccacagtggttcaaatctaaacaaaaaataatttattttgaaaatcactaagaggtaggagactcattcatgtttttttgtgtatcagccattattctt
ttcattgttgaccagtgcttccattgtatgactatgccatttttttatcccttttcctattggcgaatatttgggatattttcttcacatcaacagcaat
ggattcttcaaaagaggaaagcagtttttattgaaagagtctggaagcctctggtgagttatggcatcaaatcaggggacattttgactgaacgagttct
gccagaaaaggaaggacacaagtcaaaatcctttgcttttgtatttcagtgacctttgaatcttattgaccccagtcagtctttAGAAATCAAAGCAGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGAAATCAAAGCAGACtgcatcactagattttcctgtaccttcagtctatctgttatcttcttgactgtctaaccaaagtgatccaaagatgaatg
aatttaaagattttctactggtcttggtgtgtgaatatacatggacttcttcacttttcaggtctttatttctctttgtcttattaattgccttccacaa
agcaatagagctatcttaaaagtactttgaaatccctggatgaaaacagccaaagccctgaaaaatatcagcattattatatcagttaataggcaattga
agctatgaaaggaataaccagaaagacaaatgaatggccaagaggtaaaacaattatttaaaggagaaataatgggtaacagtaaccagggttctgagaa
cagg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1405 chr8 107580284 107580594 RIP_Alu_chr8_107_01 0 + 7118|pAlu8-107179801 NA NA SINE Alu Yb8 gttttgatcaaaaagctttatacgaaatccagaatcctttaaatcacagcatggaccatagaaatgtgttttatttaagagactttaattcaagactgtt
gttttaaatcatgattgcatctttatgtttcattcaactcacatgttaagctgtgtgtgtgagtgtgtgtgtgagtgtgggcgtgtgtgcttgtaagtgc
atgtgtgtgcatgtgtatgtgtaaattacatgatgcatctgggcactcattgcagtatgtcacttaaaaactttaaaaaaatgtttggagttaattttgt
tccaagataattttatgtgccattagttcatctcatcgtcttatataacaaggaaccaactgatgcaggttttacctttttagctAAAGAATTAGGAGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAATTAGGAGATgtttaaatgttatatcctgttttccttgacaactataattttgcttgggagatgattaccagaatgactgctaaa
ttactatttttctattggtctaatattttattcttatgaaaaatgttatttctagtggtctttattgaagaccagttgatgagggtcctcctaagtcagg
ggaaagagtgtatacgtttcatgtaaaatatccttcctctttgtaacccaaacctttgtatagcttggtttctctttcttagtctatgttgacagcagta
caaatagcataatagattcttctctgtatatttagagggtttttttccataaacttatgtgatactttgcttttactgtgtaggaatgatgaaaacacac
aacagaccca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1410 chr8 108189410 108189713 RIP_Alu_chr8_108_01 0 + pAlu8-107788927 NA NA SINE Alu Yb7 aaaagaaccataattttatttggtaaatacaagctagggccaaaacttttatggaaaatgtaatgcttcagaaaacagcatacctgcaacttcacattat
gggagggtccctatgataaagagtagagactggctggaggagaaagcttccacaggaagatgacagtgacaactttcagatttgggaaagtaaaagacac
ctggaaaaaatggattggggacttcaagcaaataaaaaaaatcttcctttctttgcacatacttaagatttgaggaacaaagggcttcaggtcctatgct
agcataactagcatgcacttgacggggcatcagccaaatgcaggtggagccaatgaacaccagaaaaggactatgctgggtAAGAATGCATGAACATTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAGAATGCATGAACATTGGaaaagcacagaggaagtgggggaaagacgtctccagattctgctgtggtagtctgactcatgcgcatcagggttgtgc
agtgtcaggcaaattttttgccagttccatacatcaaccattgaaatgatgcaccaccgaaaccaccaattaaaaaaaaaaactatcaataaaatattgt
acaattttttcccaggagtaacagaaattgggaggaagggttgaggaggaatgaatctctatcatcttgttgtccatgggaatgctgacaggaaaacaaa
tcagggaggaatggcctgacaaggagcccctaaacccaaggtgtcccagggttactgtctccctttgcctttccccttcatgagcagatttctctcccac
ctt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1422 chr8 109799351 109799662 RIP_Alu_chr8_109_01 0 - 19560 NA NA SINE Alu Ya5 ctctcacagttcaggactcaggtcccacccacatttctctctctctgttagtgttgtcaaaaatcctagtgtatcacagctgttctgtttctagcaggtg
ttatcactaattagctcttcaaaactaaacacaagaggagtctgcgctcttccccaagtactatcagccagctgctggctttctgctgttgtgaacagag
gtttgcaggcattttcattcatgtaccactgtaggtaataaaactctgagcacactccaatgtatatatatttatttaaagtatatccatatgctgtatc
aatatactatattaatacactgcatatttttctaactggtaccactctttcatctattcacagtacagcagccagggggtccttttAAAACCTAAGTCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACCTAAGTCAGatcatatcactagaaaccgccaatggttccccatctcactgagaacaaaaccctaagtccttaaaatgcccctga
aggtcttatacaaccagttcaccacctctcattcttcctcccttacgccactcaaggcacacttacctcctgctattccttaagcatatttccaaggcat
atttcccactcagggccctgttccctctacctagagtccttttcctccaaatccccacatgaccattccctcgccccttctagtccctgttccaatggca
tctctccagtaaagccaccttaatcattctgtttaaaattgcaactcactctcccatccccagcattccctatctgcctgtcaccctttgtttctctctg
gagcatttatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1428 chr8 110579496 110579805 RIP_Alu_chr8_110_01 0 - pAlu8-110179004|Yb8AC702|9160 TGTTTGGAAATAAGCCAAACAAT GGGTAGCAACCTTTTTCATCTTT SINE Alu Yb8 agaagatttgtaaaagactgtgtacttgcctgagatgtccaaaaggccactgatggcattgtaactcatgattcctgcatggggctttcggggtgccatg
ttatgagctgaagcaaaggtaggccaacaaatcccacttctcccaccttttaccaaaaaagaaaaagttaatgaaaattgaatatgcactcatatgaaca
acaacattaaagtttcaaatttttcacctgatggagatctaggactccgatgagcagcagtgagttcaatattaggatcatcattagttaggacatcaga
gcaattaaacccagggctacttccaacaattaatgagctctgtttggaaataagccaaacaatatagcattaataatagctcttactAAAAGAAAACATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAACATGataatgaatagtactaaattctactgtagtaaataaaatgcaaactataaattcaaaaagtggatcattcattaaaca
aagatgaaaaaggttgctaccccaactggaaaagcactaagaataggagagggaagacagacatgtaaataattacatataaggacatgttatgtttctg
tgataaatacatccagggaacagtaggcacaaaaaagtggaggaagtgtcattaccacctaaactggctcagaaaaaacttcatagagggagtgaaaatt
taactatttcaagattagcaggtgataagcaagaagagggaagggaggaggagagataagaatgaacagcttttttgttgggtgcggtggctcacgcctg
taatcccag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison|Candidate screening NA 55 482 161 NA intron
1441 chr8 112237414 112237754 RIP_Alu_chr8_112_01 0 - pAlu8-111836927|3230 NA NA SINE Alu Yb8 ctacattgcctataatattgagggattgaaggtggcagaagtgtaataagtaacaaatgcaacaaatcatcatgattgctatgaagatttaacactacat
gctagaacatcttttcaggagtatttcttagttgcaatgatcataattaaacagatatttctcttcttatagttcagaaagtatgatagcactaagaaga
gcacattaggatgaaataatatattcttgcaataatttgatgcaaatatatagtaaatttagaaaataataagagttttaataaaacaataagagtttaa
taaataaacttatctaagtaaacatgagtttaaaaaataaaacaataagacttttaataaaatttagaaaacaataagagtttttatAAAATAAGATTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAGATTCCaatatcacactctaatagtgtaaaaaggcttaatgttaaaaattaca
cagtgggtgcataatatatacctgaatttgtagaagttttatactattttaagggtaatttgataaaaatcatgaaagaattacatgaagttatacctaa
ggttatatttaaaattatattagtgtggttgttgaattattataggaatagtacgtatcttaacataataccattttagataataaattgtcaaaggaaa
aaaatttagagaagttttatataaaaaacaaccaaactgcgtctttctggagtactaactaaaagtatcttggaaacaataaatagatactctagttttt
atcataatccactttgggatatacagccagcacacagtag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1448 chr8 113154612 113154929 RIP_Alu_chr8_113_01 0 + 298 NA NA SINE Alu Yb9 ccctcttcacactcttagcagctacctttggcttctacaaatttatctccattcaattctcatgttagcttgcaggatatgtcaaattcaccaacatttc
tttaatatcctcagcattatattcagagaagtgactcagcaaaagcctatgctatttggccatttgtctatgattaaaaatgtaaatttacatcacagtc
actctatatgccaaatgattatttcagacaaagagtgctatagaattaaaaacctaaaagaagtaggattagcatacaatctacataatgcccaatatgt
caaactcatatccaaaagagctacaaaataaatacataaataaagaaacagacaaacaaatgcaggataggagactccctaatacttAAAAATAACTGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAAACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAATAACTGAGagggccccagccaaccacattcctaccatgggctcataattctagccacggggtagcccctcaaccttca
tgggccctgagactaacatagagagcccccttgaaaacacactaaggcattgctgcagagaagaagctgacactgggtccccaaaatccttgagtcctta
gtaacagcacaatgccccagtggtgggacaggagctcagcccccaccattctgtgtcctgccctgcaaccagggctgagacaggagccatggacagccat
cccacacgctaacacccactattgcagaagggcagccatgcatttttatgcatgcggaggacaaattccactctacacaaccagtgcagactgcccatct
ccctcacccgcccctcc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1474 chr8 116557409 116557721 RIP_Alu_chr8_116_01 0 - pAlu8-116156926|238954 NA NA SINE Alu Ya5 aatattgaggacctaaaattgcaaagtctatataaaccaagagctgcttgctggttaggcagaaaccaaatttcctcctagctctgccttgcattttcaa
tcagaattacttgtttgttacaatatgattttcttcaaaaatagatgctctgaggcaaaaggcgagccacaggctatatgttgaatagaaggttgattag
ttggccgaacttcaggagtgggagcctgaagccatgcttcctagggaaataactccctctctgatagtttgttttgctaattactagtcccaatttgagc
tcaatattaccaacaattgctttatagttacttatgagtcaggttcaacattttatgctgattttacttgcacttaaacaaatAGAAAGTATATTTTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAGTATATTTTCTGaacacctctttttggtaaagcatgttgtatatttgataatttacaatttagtttgctgttttcttttgttc
tttgttgcttactttctgtgcttcaagtttattgaacttcaagtttattgagctagaacttatcacagatggtaaatgtggaaaatgtgatggatgtaga
actcctcccacataggagtgaaatgggagactacttttgttttgtaattgatagtatgaagccttacatggactatcttcaatatgcattcattacatga
tacattcctggtattaaattgtaatcgtcgagatagcactgctaaacgagatagcactgctaaagtttatgtctgtggtttactatttagtataattatt
cttagcttaata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1487 chr8 118292723 118292990 RIP_Alu_chr8_118_01 0 - 7894 NA NA SINE Alu Yb8 catgaactttaaaatcatttttttctagttctgtgaagaatgtccatggtattttaatgggaatagcattgaatctataaattgctttgggcaaaatggc
cattttaatgatattgattcttcctatccatgagcatggaatattattccatttctttgtgtcatctctgatttctttggacagtggtttgtagttcttt
ttgtagagatttttcagttcccttattagctgtattcctaggcattttattcttttgtggcaattttgaatggaagttcttttgtgatttggctctcagc
ttggctgttgttggtgtatagaaatgttagcaatttccgcacattgattttgtatcctgagactttcctgaagttgcttatcagcttAAGAAGCTTTTGG
TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGC
GCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAAGCTTTTGGgcttagatgatggggttttc
tagatacagaatcatgtcatctgcaaacattgatagtttgacttcctctcttcctatttgaatgcccttaatttctttctcttgcctgatttctcttcca
gaacttctaatactatgttgaataagagtgatgagagagggcatccttgtcttgtagcggttttcaaggggaacgtttccagtttttgcccattcagtat
aataatggctgtgggtttgtcatatatgactctcattattttgagatatgttcattgaatacctagtttattgtgagtttttaacaagaagggatgttga
attttatcagaagcctatatatttttcccaaacttcgactcatcttccctgttcttcattttccaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1491 chr8 118781984 118782300 RIP_Alu_chr8_118_02 0 - pAlu8-118381506 NA NA SINE Alu Ya5 ttgctgtgggcttgctaatgcaggagagctggactggacaataacatgcaaaggagtgatagggagatagggcttggccggtagagcaggtgccacctaa
aaggagaacacgatgaaactgaacatcttctcaggtatttattggcatttgatttattcttctttgaatcgtctagttgagtcacttgttcattttttct
attttattttttgagatttatgggtgctctttgtatattttgatgttttgaaatgtcacatgtgtctgtgtgtgtgtgtgtatgttgtatgtgtgtgtgt
gtgtgtgtgtgtgaaagaggcagagagagagataatgatactatatatctctatatgaattgtattagtttgctcaggctgccatAAGAAAGTTCCATAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAGTTCCATAGaatgggcattttattttttatttttttaagatggagtctcattctgctgcccaggctggactgcagtgg
caccatctcggcttactgcaaccttcgcctcctgggttcaagcgattctcccacctccacagtagctggcattagaggtgcctaccaccatgcttagcta
atttttgtgtttttagtagagacggggtttcaccatgttgttcaggctggtctggaacttgtgacctcaagtgatccacccattcggcttcccaaagtgc
tgggattataggcgtgagccactgcgaccagtctgagtgttttaaactcagaagtttatcttcttacggttctggaggctagaagtccaagatcagtgcg
tcagcaagtttggttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1513 chr8 121750866 121751172 RIP_Alu_chr8_121_02 0 - pAlu8-121350381 NA NA SINE Alu Yb7 catatttcgtttgtgtcctaaagcacataataggtgctcaacaaatgtctgacaatagactagaggaatgtatggataacaagaaagctagacctatact
ttctaggacatgatacatttttatgagttgaaaggaaccttagagaaaaatttatactaaagtcaaattgagaaggtattccaggctacaacagtgactt
agcatcaaaatgagacaatgaatgatgtcttgtcgttttctagcttcttgctactcaaagtgtattacagggacaccagcagcatcacatcacctgggga
tttgtaagaaatgctgagtttcagaccccactccaggcctgtggaatcagaatctgcattttaatatgattcatcccattacagtttAACAAGCATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACAAGCATTTTCattttgaatagatcactgagctttcaccaaactaatctctcatcctttagttgaatgtcctttttttgttattttctagag
atgaaattcaatttcttagtgaatccacatgtgtgaggaatttactaaggaggggatggtgctagtgaaattaattaaattcactcagtgccttggaaat
aaagcttgaacaaaggatcagaaaaagttcctttagtgcagatgggataactgttttctcatttagaatagcgcccactctggctcagatccaggcaaaa
tgtcaactgctccaactcatgaaaggtcaatgaattgcctcaaacattttatgaaatgctcatctcaaagctggagcccccatggagatggttgatggtt
gtatgc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1515 chr8 121923940 121924242 RIP_Alu_chr8_121_01 0 - pAlu8-121523451|7437 NA NA SINE Alu Ya5 cattatttgcacaactggatttagccctcctgaagctagaaaccttctgaagttttaaggtttttttgaagggttcaggctttacacaatggtctcagct
acaatcttttgtttcatacgagcccattttctcctgagccagtgtgtaagcctagcaccctaggttaccaaggcaagaagcacccactctaggacttgca
cagtttgacgatattgacacactcttttatagctctctgggcatccagtgtcttcccttatttactgataatctaagttatgctttcaaaagatataact
agcactatgaggtgtttttgttaggagagtttcaggttgtctatttgacgatgtttccagatataaaagtgtaactatttttttaAAAAATATGTTTTCC
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATATGTTTTCCcatggtaaaatataggttgtcttctttctgacacaaatagccattgaaaagctgtattgcaactggatgacaactggcaaagg
ggaaatataattttcctgtttatccctctttgtttctcaatgtacttctgttaagctagaggtctaagagcagagaacatatttttatttgagcattctg
agtcagattaattagtccatgttttcaaaatgctttttgagatgaaatctttattcatcagcaaacctgggggttttttttgttatcataatgatagcac
cttttaaagatgctaattggcccacctgccatgaaagaacaacttcacctttgcatttaatgactagagacaacatacctaggcatcctatttattaatt
ca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1525 chr8 123304441 123304442 RIP_Alu_chr8_123_01 0 - Yb8NBC639 GTATGGAGGGGGCTTCTTTC AAGTGGCACAGCCTTATTGC SINE Alu Yb8 ttttccgtgtgttctgactgctccactcactggccattcacccttctctcttctctctttgggcctccctatttcctgagacacacagctatattgaaat
tatgccaaattaacaaccttacaattaataacctctaagtgttcaagcaaagaaaagagtcatgggtctctctagatcaaaacctagaaataattaagct
tagtgagggcatattgaaagcccaaatcagccaaaaactaggtctcttgcaccaaatatttaaattgaaaatacagaggaaaagttcctgaagaacattt
aaagtgctactcccattaacatatgaatgataagaaagtggcacagccttattgctgatatgcacaaagtttgtgtggtctggatAGAAGATCAAACCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAGATCAAACCAGccacaacatccctcgagctaaagcctaatccagagcaaggccctaactctctttaattctgtga
aggctgagagaggtgaagaagctgcagaaaaaaagtttgtaagctagcagaggttgatttatgaggtttaaggaaagaagccccctccatacatgaaagt
gcaagtgaagtagcaaatgctgatgaagaagctgcagcaagttatccacatgatccaggtaagatagctgatgaacatgtctacattaagcaacagattt
tcaatgtagatgaaacagccttctattaaaaaaagatgccatctagcactttcagagctagagtgaagttgatgcctggcttttaagtttcaaaggacag
gctgaacctcttattaggtgc Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 557 221 NA intergenic
1536 chr8 124749364 124749365 RIP_Alu_chr8_124_01 0 + pAlu8-124348981 NA NA SINE Alu Ya5 agaatttgttaccaaaacaccaggagttttgtctaagttctgttgcttgacacccagaaagccaatcactgagaagacgactgttgccagggaagaaggc
tttaatcgggtgctgcagctgaggaggtgggagatagagtcttgagtccatctactcaagcacctaaaatcaggggtttgtatagcacggcagaaatgta
accatgtatgggaaaacagaaattaggaaggagtgaggaagaggagttggtcaacaggaagcaggtggtcagatagggaatcatgatgggtgagggtctg
gtgtctctttgcccagatgtgatggtcttataatttcagctcctcgatattatcttgggagagggggtgatgactgggttcctgagAAAAGAACTCAGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAACTCAGGTaagacaactgtaactttctcaaattttaagacttcgggatcaatttttatgtttattcaaaagaaaccataaacat
cagttctagggagacaattgggctggtttcaaattgctgtgtgtgttgtgactggaaggatgcataagacatggttcttggcctcacagagctcctggtc
tcattagggatatggatatagagaatgacaaagaaaaatacggtaagtgctgtgatgggattgtgtgaaacgaacacacagaaggggtgacactaactgc
acaggagagggggcaggcaagtcttgccttctaagagatggtgaggcttgagctgccactgaaaggaaatgtggaagtcaagggataaatttggctggag
aaagggagga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1545 chr8 125959151 125959152 RIP_Alu_chr8_125_01 0 - pAlu8-125558756 NA NA SINE Alu Ya5a2 ttgatcagtctggctaaccttttactcttctacctttttctaggcattaagaagcatacattagagatttgtcagtctcattttctttcttctcatcctg
ctagcagggccttagagacaataacagcaatcacacttatgcagctttcaccatcaaccatgccctggaccagctgctctacgtgtagtatctcatttaa
ttctccccaataaggtagctaagtatgattatgatcccattttatggctgaggaaaccaagattcgggaagctcaagtggttttcccaaagtcacagaac
tggtgagacatggagctgctgtgatccgtgtacatttcattgcttcctttcctcttaaatgattctctcaagctatgaaatgtctatAAGATCAGAAGAA
CAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCGGGGAGGCGGAGCTTGCAGTGAGCCG
AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAGAAAAAAAAAAAAAAAAAAAAAAGATCAGAAGAAatggaaggagaagca
agaggctgaataatcctcaaaagaagataattaactcttagatggatgagaactatctgcatgtttttatactttttaaactctctctggaagcatctca
ccaagagtgtcattagagtttattcattatggagtcttctaattcattagatttcagttcatttttgctgacatagatttcacatccccagtgtttaaaa
caccaggcgaggatccagaagtgagaatgctgtggacataaagatgaacactttaaatatcagtctgtacagaactcccacatggtggggggccaagact
attcatatcccaccactagacaaagaaatcctagtggggccaggatagtgctctgagagcacaccgcagaaa Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1547 chr8 126093293 126093294 RIP_Alu_chr8_126_01 0 - Ya5ACA1736|pAlu8-125692903 CCTGCTCTGCACACTTCTTG GCTAGTCAGGGAAACAACAGG SINE Alu Ya5 aagttagtaacaagaaaacacttcaaatgactttccattgtctgtaagattaaatgttaatggtctgtctcccactctgacacccaccctatgctcctgc
cataggaaactgcttgagttccttgaaagtgccaccatttctcatcctttggcaatgttattccatctacctagaagttcctcatcttactgtccacctc
atgaactcccactcatcctccaggtccaaggtcctttgtttccactgtttcctgaacaacgtcctccctaactacccctcccatttcacaagcttccctc
cctgctctgcacacttcttgacactgaatctgtgggttttatttatcaacagtgttgtaaaattatctgtctacattcctaagtagaaaattGCCTTCTC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTAAGGCAGGAGAATGGT
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAGGCCTTCTCtaggtcaaggtcagttttttacctgttgtttccctgactagcacaatacttctatacac
tcaatgttaataactaaatagatcataaaactaattttggtattaataatgcactaatccacagtgacaaactatctgtcccagaagttattcgtaacag
tataaatttaatcatatatttgtcatttggaatactgattcctttataaaataagcccaaaaaataatacctcgtttcttcactgatgaaggaggaagga
agcttgctggcatggacctcagatgagaattgtcagtggcttctaagaatggttctttcaggtgatctgcaataaatcccaccaacccaaagaaatgggt
cataacacttcaatttcaaagtatcacatattt Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 484 141 NA intron
1549 chr8 126405998 126406297 RIP_Alu_chr8_126_02 0 - pAlu8-126005510 NA NA SINE Alu Y gttacccaagctggagtgcagtggctattcacaggcactatcatagtgtactgcagccttgaactcccggactcaagtgatcctcctgcctcagcctcct
gagtaactgagactataataagcatttaagtaagtagcttcctgtccccatctttaatgaggcataattaatatataattaactatgcatataaagtata
taatttgataatgtacacatctgttcaatcattaccacaatcaagagagtgaatatttgttgattgttcacaaagttgccttgtgcccttagtaatccct
atcctctgcactttcaggcttctactccccactccaacacaactgatctgttttctgatgccttacatcaatttgcatcataAAGAATTTTATCAAAATG
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGTCTAACATGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGCCAGACTCGTCTCAAAAAAAAAAAAAAAAAAAA
AGAATTTTATCAAAATGGgaatcacataggatatgctcttttttttttttttttttggtctggcaccttgctgcatgtatcaatagtcctcatttttttt
ttttttgctgagtagtattctgtggatatgacatacaatgtctattcatttatcagttacgggatattgggcttgtttccagtttgaactaatagaaata
aagctgctatgaacatttgtgtagtagaagtctttctgcgggcacatgcttccaatggtcttgaataaatatctcgaagtgggatgcctaggtcatatat
gtttaacttttaaagtggttgtatcagtttacatttccaccagcagtgtgaagagactcagattctgcctagacttgccaacacatggtatgatcagttt
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1584 chr8 130976863 130976864 RIP_Alu_chr8_130_01 0 + 238394|pAlu8-130578553|Yb8AC1416 AAAGGGCAAGAATAAGGCAA TGGATACCACCCTTTTAATGC SINE Alu Yb8 caatcgatcctcccacctctgcctcctgagtagctgggactacatgcccgtgtcatcatgctagtgtgtgtcggcggggttggggtgggggtgggggtgg
gggtgggggcaggggcagggggaatactgttgttgtttgtttttttttgtagagacaggatctcatcgtgttgcccagactggtctcaaattcatggcct
taagcaatcctcccccaccctggcctcctaaagtgctgggattacaggcatgagccatcatacctggcagctttagaaattctggataccacccttttaa
tgcttatatacaaggcagatactttcttctaggatctaacatatcttaactttgtttatggtgttgtttgtcataacagtccagtttttAAGAAAAATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAATGAttactgtttaaataataattcttcaaaattgccttattcttgcccttttattcactcatgtgattgtcaaattctac
aaaaaaattctgatgggattttgatttgattttgcattaaatatataattgccatctctataatttcaatcattttgtcatttaatctatgaatatgaca
gattacataaattcattttctgttgctaaaccattcttgcattcctgagatcaagtctgcttggttggttatttatttatgtatttatttatttatgaat
aaatgaatgagggtgaatgaataaatttgaaacacggtcttgctctgttgcccaggctggtcttgaactcctaggctcaaggaaacctcctacctcagcc
tcccaaggtgct Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Genome comparison|Trace comparison|Candidate screening NA 60 500 177 NA intron
1593 chr8 132237483 132237779 RIP_Alu_chr8_132_02 0 - pAlu8-131839072 NA NA SINE Alu Ya4b gcaggcaagaaaagagcttgtgcagggaaactcccgtttttaaaaccaccagatctcatgagactcattcactatcatgaagacagcacaggaaagacct
gcccccatgactcaatcacctcccactaggttcctcccatgacacatgggaattgtgggagtcacaatccaagatgaaaattgggtggggacacagccaa
aacatattagctagtgtgtcttggaaaagtggtaaaagactaggtctgcatgactttgaattatggatgtccttgttgtcaggtatttatattcattaac
aagcaggttagaaccatttacacaataaaaggcttccttccagaaagctcccttccatgaagctctgtccacattttgtctctAAAAGAAAAGAAGGGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCGCTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAAAAGAAGGGAAGgaaaacacgactgttttttggtcaaaagaagttaaagccaaaagacggtcattgatttggttgggtatgatcagtgaagtctggga
tttcaggggtccttgcgtggctggaactggttaaagaacttctataatccctgagaggaggtggacaggagtctaggtatgaggatggtgggtttcacag
cagacaagcgagcaggctaagcaaagacattagttgtactccataaaaaaaatcctgagcaggagttaagagacctggatcatttcaggctctaccactt
tgtagttacagagtcttgggaagatcattttccctctccggacttcatctttttcttctttcaaagaagcaattatacaaaaagatctccaagttcc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1595 chr8 132462525 132462526 RIP_Alu_chr8_132_01 0 + 19655 NA NA SINE Alu Ya5a2 ctgaccctcactgggtggtctcactggatgataagggcctctgttttctcatctctacactgcagtagggttcagactataggtatttgttgagccatca
gtaaatggtaggcctttggaatactgagataaagtagatctgatccacaccttgttagatcaatgaggagacaaatatgcaagcagaacactttctacaa
gatgcattaagtactagagaatgagagtgaagcatttaaggaaaatcatttcattttgacaaagtaataaaacacatcctattcaagtgtaagaactgta
gaataagagttgagtaaaggatattttaaaggtgattctgaaaaataaaatgtccagagatgcttgaggtttcattgaggccaAAAAGAAAAGCATTTCT
TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAG
GCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAA
AAAAAAAAAAAAAGAAAAGAAAAGCATTTCTaagagagttttctggaaatttcacttaagttgagagttaaagagatgagttactctttttttttttttt
tttttttttttgagacagagtcgctctgttgctcaggctagaatgcaatcacacgatttcggctcactgctgcaacctctgcctcctcggttcaagtgat
tctcctgcctcagactcctgagtagctgggattacaggcacccaccaccacacctggctaatttttgtatttttagtagtgacgggctttcactatgttg
gccaggctggtcttgaactcctgacttcaagtgatctgcccacctaggcctcccaaaatgctgacattacaggtgtgagccaccatgccccgccatgagt
tgcattttgacagg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1610 chr8 134398642 134398948 RIP_Alu_chr8_134_01 0 - Yb8NBC525|7874|pAlu8-134000238 TCTTCAGCACATGAGCATCTA AACATCTGGAGGGATAAGCA SINE Alu Yb8 gtgcttgtagtcccagctactcaggaggctgaggcaggaaaatcgcttgaacctggggggcagaggttgcagtgagccaagatcttgccattgcactcca
gcttggtgacagagcgagactccatctcaaaaaaaaaaaaattctatttatacttgaatactatcaatatattttaaatatatatttacacacacactcg
tagaataacatctggagggataagcataaaaatattaacagtgattatttctgagtggtagtttattttaatttttgtgatttccttttttgatgcatgt
acatatatatgtatatgtgtatgtattttgtgagtatctgaattttctaatagttgtacatgaagcatttctttctaaaagcttAAAAATAGTTATTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAATAGTTATTATGacagtaacaatcatttctatagcttttcttagtttactatcagctcaagaaaaaaactaagtctaatagctgggtgtg
gtggtgggtgcctgcagtcagttccagttatccaggaggctgaggcaggaggatcacttgagcccaggagtttgaggctgtagtacgatatggtcgtgcc
agtgaacagcaactgcactccagcctgggcaacatagtgagatcccatcctgtctcttaaaaaaaaaaaacttggtctacttacactagatgctcatgtg
ctgaagataaagtctctgtctacctggccaaatataagtattgacctgctataaaactacggatggcccatttgttttaggcagatgtgcaattcagaat
ccaccc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison|Candidate screening NA 58 801 479 NA intron
1636 chr8 137786011 137786322 RIP_Alu_chr8_137_01 0 + Yb8JW649|pAlu8-137401126 TTTCTTAGATGTCTGGGAGTGCT ATACTTTGGGTTGGAGCTTCTTG SINE Alu Yb8 cagtggcttgagttatttaaaaaaaaaatatggatcgtgcactcattcacttgtttatacatttgttttcttagccagtccttggaaaagggtaagaaat
aaaatctgatgaaaaggtgttgaaaacttaaaaacagccttgttactaaaagtagcattttgattgtgaaatgcacttcatatatacatatctcagtttc
tttatctgacaaatggtgatacaaaaatgtattaatgagaaaattctaatttttatggagaactccaggcctctttcatcttatttgggagaggagaaaa
aaaatcatagttaagattcaaggaaaaggacaaaaacttatgcatagcatactttgggttggagcttcttgatctagtaaagataGAAATGAATAATTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAGAAATGAATAATTCCttttttattaatagtgagattaatggaataagagaagcctaaggctggccttccctttggaaaggagcactccc
agacatctaagaaatgtccagatgggagccataatatggctaaaatgaagtaagactcgtgattttaggagataaagatgcctgtcacaatttattttta
ttttttttgtggactcttcttgctattagagttccctttttagtgtataatttaaagatatatatgagaaaaatatcagttaatcattgtaatataaatc
acaatttggggctgctgttatgtaaaatatatcatttagaaagagcccttgataattccttctccagctaaacaaagtctacctttgcagatttaaccac
atttgctcttt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Candidate screening NA 60 466 140 NA intergenic
1644 chr8 138929743 138930055 RIP_Alu_chr8_138_02 0 + pAlu8-138544858 NA NA SINE Alu Ya4b gttcagggaactgagaattactttgtccctcacactctgctgagagctttacaggagctgacttaatacactttcctttaaatctcccaagataggcacc
acttaccttgttttacagatgaaaaactgagtccaaaaagctacgaattttgcctaaaattacataccaaaaaaaaaaatagaacaagcatttgcaatta
ggtccctttgacactaaaactcatgaactctccactgcttgatctttagaaaacaaacagatgtttgatttatggtaatatatttaatttaaatctctaa
aaatcactgtacttgtatttgctgtatattgagcatatgcttcctaaggtcatttctaccataagcagcacagactggcttgctcttaAAGAGAAGGATA
GGCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCAGGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAGAAGGATAttggggccgggcgtggtggctctggctcacgcctgtagtcccagcactttgggaggctgaggcgcgggggtcactt
gaggtcaggagttcgagaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggtgggcatctgtaatcc
cagctacttgaggggctgaggcaggagaatcgcttgaatccaggaggtcgaggttgcggtgagccaagatcgcaccacagcactccagcctgtgcgaaag
agcaggactctgtcaaaaaaaaaaaggagagagggagagagagggccatcggggtgaggcaacatctctcgcagatcttcagctgtgactcttcaggaca
aatggccatggg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1645 chr8 138978352 138978557 RIP_Alu_chr8_138_01 0 - Yb8AC1439 TTCAATCAAGGAGGGTTTGC AAGTGAGCCAGGTTCTGTGC SINE Alu Yb8 ctttcatctctgagatctcaatttgtagtcactaacattataatttcatgactttcatgtcataaaatagcaggtacatttgagaagtagggttcaatgt
gatttactatggacctggccatttatatagcattttatatttcataaatccctcccacataaacctcattatcagatctttgtcatgcttgtgagtatca
tcctttgtgttgtaaagggacataaaatgattttaatgagacccaccacgtgctgagctccatgctattcaatcaaggagggtttgcatcatacctactt
agattcccgtcttagccctgccagttaacagctctgccattactttccctttgagagatgcaataaactggggataatcatatatacgtcAAGAGCTGGT
ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAGAGCTGGTgagcagatacgtaagacgaatgagtccttgtagcacagaacctggctcacttattcactctatcaataaatatttattatcttag
tttgtaagcaattgaacaaggtgattgtaggctatgaaataatagacttctgtaagctttcagggtttgtttgtttatttctttgtaaatacaagtcatc
taagaagtaagagataaagtggtctgtggaacaaaagtgtggaagggtgttttggtgtgggcacagagtgtgtgggtctttgtgttttgcattgatgcca
accagagagaatgtgccacagatgaggaactgaaacacctgtaggacaggtgcacatcccactggatgttgaccccctttgtgtttggcaacccctgttg
ttatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 400 185 0 NA intron
1648 chr8 139395161 139395162 RIP_Alu_chr8_139_01 0 + pAlu8-139010376 NA NA SINE Alu Y ggccaggctggtctcgaactcctgacctcaggcaatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggcctaaaa
catattctaaacacagaattaagcaaagagtttttagacttggtacagagaacatgaaccataaaagaaaaacataataaattttgtttgtttgtttgct
tgtttgtttattttgagagatgaggtcttgctatgtcgcccaggctggcatcaaactcctggtctcaagtgatcctcccacttcggctccccaaagtgct
gggattacaggtgtgaggcactgtaccccgcagataaattttagttcattaaaactaaacacttttgtgctatgaaagacactgttAAGATACAAGCTAC
GGCCGGGCGCGGTGGCTCGTGCCTGTAATCCTAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGATACAAGCTACaatgtgggaaaaaatagttgcaaatcacatgcagtggacctcagtatctgtgtattctgtatttgggaatttgtttactcaaaaaaa
tttgttttagccccaaatgcaacactcacagcacctttgtggtcattcacagacatgaacacagtggtaaaaagtttgaatcttctgacactcgggtgcc
caactgaggttaagcaatactaaaaacaagtatcccttttgcaatttatttagtctcacatatttgtgtactctttgctttttgttggtgttccactgtt
tgagatggaccccaggcatagtactaaagggctgtctagtgttcctaagggcaggaatgctgtgatgtgccccatggagaaaggatgtgtgttagatga Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1657 chr8 140544451 140544772 RIP_Alu_chr8_140_01 0 + pAlu8-140159566|994 CCACGCTCGAGCGTACCTTCACC CATCTCTCCACTTTTTTCTCTGTAACC SINE Alu Yg6 ttacccttcctacctgcttgttttagttccttaccaattcttttccaatcttttagatctaaagttccttgttctggaaaccatgggcaaaattgttcta
ttatttgaaatagcttgattagattttttgtagatactttaactccccctctttttaaaagaattttaataaagctgagataagaggcatatttactttt
aattttacttttagtttgccccattatcaccctagcttcttccgagcgcacaagcttaccgtaaggctgactgtagacgtcctcgggatctcttgtcgac
ttgtcctcaatgaccacgctcgagcgtaccttcaccctagagaaaagcctccacgttgggcaccagatgtaggggtgggttgcccctacAAGAAAACCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTA
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAAAACCATaaggagaatacgacttgagtcagctaggcaagatgggggaaaaaatgaatgagataaagtcaaaaaaa
cagaacatgcatattaaaaaatcatactagaatctaaaacaaatattttaaaagtgaatgtaaaaatggatagagtcaaataaataatatggataacaga
tttgcaaaaccactccaggttacagagaaaaaagtggagagatgaaaacacaaatatccaaattagtatcttaaaactataatgatagacttcaaggaaa
ttaaaaatataaaaacatcttaattagaaaatctgaatttaaatatttgtataataacaaattactaaagtaatactagaaaacacagataacctgaata
agacagtaaccagaaacaaac UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping|Genome comparison NA 0 0 0 NA intergenic
1658 chr8 140662515 140662516 RIP_Alu_chr8_140_02 0 - Yb8AC742 GCCTTCAGTATCAATCATAGAGGTG GGTTTCACTGGGATAACTTCCTT SINE Alu Yb8 ttctaatttaatttcccatttgagaaagaattcttttatggaacaatcaggcttgaatgattccacgggcttagaaaacaagagattaaaagcttttagg
ctcagtataaaagaaggaaaaaaacaagaatgtttgtcttaagactccgttgaggctattgccttagtggaaaacgagagttggctagtctggttctcct
taagtcttgtaataaagtgactatgaaaatatcaaatgtcacaagtttaaacaagttagaaagtgataatatataatatcatgtaagtggaaaatttaag
gtttcactgggataacttccttatcagagtttgctaactggattagggtaaacatttgtttttgtagtcaagtgctagcaagctttAAAAATTTAACCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTTAACCATtattacatgtttcacctctatgattgatactgaaggcttttttttccttctgaagtttctcttc
tcatggtatttgctattttaaccctgtttcaagcaaataaaatttaaacaattaagaatttcaggcatattctattataaactatttaaaagtttaaacg
catgtactaaacatgaaataacttcctctggctgtgtatttaagaatatttgtgaatttcttttcagtagaagctcaagtttataggcgtcattacttgg
ctagttattcgggttaaacataatatgcctttcctgtgatattatgttagtagtacaagtgctgttgtattataacatttgacttttggggatcataata
cagtaaatagtaaatggacata Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 638 302 NA intergenic
1689 chr8 144794757 144795077 RIP_Alu_chr8_144_01 0 - pAlu8-144498249 NA NA SINE Alu Ya5 ctgaagcaagttctccagatctagctaagatggttgactaaggtggctactctaaaaagattttcagtgtggataaaaccgctttctattggaagaagat
ggcatctaggactttcgcagctagagagaagtcaatgcctggcttcaaagattgaaaaggacaggctgactctcgttaggggcgaatgcagctggtgacg
tgaagccaatggtcatttcccattccaaaaattctaggacccttaagaatgatgctaaatccactctgcctgtgttggaaatggaataacaaagcctgga
tgacagtgcatctgtttacagcatggtttatggagtattttaagctcactaatgagacctactgctcagaaaaaaagattcctttcaaAACACTACTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA
AAAAAAAAAAAAAAAAAAAAAACACTACTCACtgacaatgctcctggtcacccaagagctctgatggagatgaacagggagactgatgttcttcttttgc
caacacaacgtgcattctgcagcccctggctgggagtcactccaactttcaagtcttattaagaaatatgtttcacaaggctgtaggtgccataatgatt
cctctgatggatctgggcaaagtcagccgaaaaccttctggaaaggagtcatcattatagatgccacgaagaacattcatgatttatgggaggaggtcaa
aacatcaacatttggtattttggaaaaacctgattccagccctcatgaatctttgaggggtttgagacttcagtggaggaagcaactatagatgtggtga
aaatagcaagagagctagat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
586 chr9 190131 190443 RIP_Alu_chr9_000_01 0 + Yb8NBC434 GAATCCTCTTTGCCCTATCAAA AGGCACTGTGCTAGGCTGTAG SINE Alu Yb8 cagggtttgaatccaagtcagccttactcccaaccactttccacttcattatgttgtcttattgctgacttcctgccaggacttcccaagtgttcatttt
cacgtctgcagctcatttaattacttttagttcctttttccttttccaatccagtcatctatactatttaccctatgtcagtgaatgacatccagttggt
tcagtatttcaaaatttctggcccaccttctcttctcatctgtatctggttacctttttatccaccttatatatcatttcctaggaaagattccatgacc
tcccaaggattgactttgtacttttcatgtgcttttacagcacaaacagaatcctctttgccctatcaaagtagtaattaccaggtatAGAAATTATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAATTATCTGtttgcttatttactccccaactacactaggctcctaaggactgtggcaatattcatcttatttatgagtcatatct
acagcctagcacagtgcctggcacatagcaggtgctcactacatattttgttgaatgaatgcataaatgaatgaggttacacacatacctctatgacata
gtttggatattagttccctccaaatatcatgttgaaatttcatccctaatgtgggaggtgaggcctagttggaggtgtttgggtcaggggggcagatccc
tcatgagttgcttggtgtcattaggttaggattgagtgaattcgcgctcttagttcctgtgggatctggctgcctaaaagagcatggcactcctcccctc
tctcttgctccc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 57 471 147 NA intergenic
602 chr9 2341303 2341304 RIP_Alu_chr9_002_01 0 + pAlu9-2341303 NA NA SINE Alu Y gttttaggcttcagaattattagaaacattttttcttatgggtcctacatatttttattaatgtaattcttttttacattttatttatttataaaattat
ttatgtaattttattaatgtaatgtagtcttggttgctatattgatgtggtcttttcttacattatatcatctatgtggttattgcttatatgtacatat
gtatgggtgtgtatgaaagctaatgtttttatctattatttctatacccctaatacctttctgaattctcttactgattgtaatagcttttcagttagtt
ttcttgttttccaagtatgtagtcatagcctctgtaaataatagtattttttcctttctcttttctaactcttttcataactctAAGAATTATGATTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCTCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATTATGATTTCTttctcttccccaattttgttggctatgacttactagtacatgtcaagttctatttctgactataatgggactattttagtgcttc
ccattaaacataatgctagttttggggttatgactgaattacttgattttgctatagatttgatttgtctaacattattttgttgcaatttaaaaaaatt
aagaatgaatattgtattttgtctggtgacgtcatttaatacatttccccccatgcttatataatctcaaacacagggggtttgtcattgacttatagaa
attgttttgtgttatatacacctacgtttatcttattgctcattatataatacttcgtggaattttttttttccaaattagatttagctcattgtttta Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
608 chr9 3068465 3068775 RIP_Alu_chr9_003_01 0 + Yb8NBC585 CATTGGGTTTAACATTCGCTCT CACGTGTGCAGCAATGTATG SINE Alu Yb8 taatatctctctgtatcatggcctctttaaaaaaaaaaaaaaggatgagtaggtacagggagaggcgaaggatttggttgttgtggggaaagggaaatta
ggcaatttgcttattagcttatttgcttcttattcatttattaattcaagaggatgaatatataaatgcttcataaaattcaaaaggtagaaaagaatat
gcagtgaaagtaagtctccctcatgcttttgacccccagtctccaattcctctctccaaaggtgaccactgttaccagttgtgtacccttctagagatac
tttatacacataccaatccatgtttggctatattgacattgggtttaacattcgctctatccaatgtcttgctgtatatcatcttAAAAAGCATATCCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGGGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGCATATCCTGggttctgcaccttgaattttttaaatgtaacaatatatcttggcaattattccatgtcagtacatatagcagtgt
ttcatcctttccaatggctgtatggtattccctcatatgactgtatcaggtttttttcataccacttgctattacaaaaaaactgcaatgaactcatgtt
acatacattgctgcacacgtgcgtaagtgcacatgccttttctctcctctctggcttattttactttcctttaatctctggtttctgtgattatgctata
ttatatcttggagtttatatctttttggtttgttctgcttagaattcattgggtctattgagtcaaagattcacctttcagaagttactgaaaattatta
gctctttatc UCSC - Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 585 260 NA intron
613 chr9 3770632 3770942 RIP_Alu_chr9_003_02 0 + Yc1RG132|pAlu9-3770534 TAAAACCTCTAAACCCAGCCTCT AAAATCAGGTACTCTGCTACTTGC SINE Alu Yc1 tttgcaattggagttagggtcagatagttgagggtttctttcgttctttctttctctcttttgagatggagtctctctcggtcacccaggctggagtgca
gtggcgcgatctcggctcactgcaagctccacctcccaggttcatgccattctcctgcctcagcctcccgggtagctgggactacaggcacccgccacca
tgcccagctaatttttgtatttttagtagagacggggcttcaccgggttagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcggcctc
ccaaagtgctgggattacagacgtgagccaccgcgcctggccgaggttttaaaacctctaaacccagcctctttcagctactatAAAGATATAAAAAATG
ATGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGATATAAAAAATGtcttgtaccaattagattgtgttcagctgcaagtagcagagtacctgatttttaatgtcttaagttgcaattat
tttaaattttaatggataatctggaagtaggcattccaagtttgctttggaaattccatggtattataaaatatccagactctttagaatcttgagcttt
gtcaagggcagtatctctccttatgatcagaaaacatctgccagatcttcaagaaactcaatctcatatgacagcatcccaagtagaaagctggaggcag
ctacagagaaagtctttttcttcacatgcctctttgttattaggaaggaatgaaaactttttcccagaagccccaagaagacttttccctttatcacctt
agatgaattt UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Candidate screening|Genome comparison NA 60 429 103 NA intergenic
618 chr9 4336671 4336969 RIP_Alu_chr9_004_01 0 + pAlu9-4336570 NA NA SINE Alu Ya4 tcctttctctcttgatgcagcctagctttcaacagcactttctccctggggatacaatacatacaaagcttcatttgacagtcaaagcagagcgatgact
ttggtgttctagccagtgactgccctgccctgaagcattaaaactcattgattaaaaggatgaagagccatatggcatcttgatttaggaagaataaaaa
atacattaaataatttctaaagtattatatccattattcataagtgtggccattactttacatccagagccacaaaatgtcaatcaactgatagaaaaag
agcagaattgccagtctcagttgcacctttatggccatccttggtcagcttctctagtaggactaacaagcagtggcaacaagatttAATAATGGATGGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
TAATGGATGGAatttcaggcaatagctgtgtcttagtccattttgtattgctataaagaaatatctaaggctaggtaatttataaggaaaagaggtttat
ttgactcacggttctgcaggctatacaagaagcctggtgctgtcatctgcttggcttcaggtgagggcctcaggccacttccactcatggcagaaggtaa
agagaagcaggcctgtgcagagatcacatgacaagaaagagacagaggaagtgtcagactcttcttaacaaccagctctcatgggaactaatagagcaag
aactcactcactacccctcctcggggagggcattaatctactcatgagggatctgccctcatgacctaaacacctctcattaggctccacctccaaca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
636 chr9 6742050 6742356 RIP_Alu_chr9_006_01 0 + Yg6AH138 TTGTTTGTGATACCAAAGGAGCTA CTGGTTTTGAGAACGTTACCAATTT SINE Alu Yg6 caactttagctgaatgatgagatctcaattatgcataatcagaacacttaaggaagatggaacaggatagttgttcacaatagtcagctcaaggccccta
gaaaatgtattataaagctgcaggctgaaaattgagctcattgatcagacagaataccttctggaagaatttgagtagaaaagaaaaatcagagcaatta
ggtagggagaaagggaaatattaaaatcagtgaatttgataaatttgaggtaaactacagaatgtgaaaatatcttacaaggcaacattttgttctgcag
aagaaagcccatgacaattaggttcttgtttgtgataccaaaggagctactgctggagagattaagcaagtcacattcctgagttAAAAATTAAGGAGGA
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATTAAGGAGGAacaggtaaaacaaaaaattggtaacgttctcaaaaccagggattttttttttttttccggtggagtttcgctcttgttg
cccaagctggaatgcaatggcatgatctcggcttactgcaatctccgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggttta
caggcatgcaccaccatgcctggctaattttgtatttttagtagagacggagtttcaccatgttggttaggctgatctcaaactcctgacctcaggagat
ccgtccacctcgccttccctggaattacagacgtaagccaccgcgctcagcctaaaaccagggattgttaaagcaacttccaaaaagttatattgtggtc
tctttc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 55 435 114 NA promoter
665 chr9 10488751 10489050 RIP_Alu_chr9_010_02 0 + pAlu9-10488651 NA NA SINE Alu Ya5 agcaatatgaaacacagtatttttgtttgcataccaaaaaaattaactgttagctttattggcactaataattatcctatcatttgcttcatgtcaattg
gttataccacattaaaggaaggcttccttgcacctgggtcaaaacaggtcacatcaaatttctcttttatttcaaatatctcctcaaatctgtaaacaga
atgacaaagaaaacttacttttaagatatacgcatttttgtatgaaccaacattttcagtaatttgactataatagatatcttatagcctgagacacaaa
aaaaaggtaagaacaattggtgttgtatattataaatagcaattaaggtaaaattttcacaccaataaacttataagaaaaaaagacttAAAACCTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAACCTTCTTGgaatatctattccctcagcaaaagttggggcaactttatatctcagttaatgttacatttgttaccaaagaaaattcaacaagattcaa
gtatttaagctgaactgtctgcccagctaccactagatttatccttctgtacacataccaagcttgaggtttttaaaatgagaaggtcctcattgttcaa
ctcccacttatgtgtgagaacatgcagtgtttggttttctgttcttgtgttagtttgcccagaacttaatgtataataaaaaagagaaagtccttactaa
actcgatagattattattactagggataaacaaagaccatatattcaacctgccaccatcttttttgtatctgcccaaaacatcttaaaatctcttacca
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
667 chr9 10818106 10818426 RIP_Alu_chr9_010_01 0 - Yc1RG60 ATTTAGGGCTGTGAATTCCTCTC ACACTTTTGAATCTCAGTCCGATA SINE Alu Yc1 tatcctaaatatatatgcacctaacacagaagcacccatatttatatagcaagcacttggagaccttcaaagagacataggatctcacacaataatagtg
gaagacttcaaaactctacttacagcattaggcaggtcttcaaggcagaaaattaacaaagatattctggacctgaactcaacattggaccaaatggatt
tgatagatctctacagaattcttcaatccaaaaagccagattatacattctctttgttgcatggcacatactctaaaatcgaccacataattgaacataa
atcaatcttcagcaaacacaaaggaaccagaatcataacaaacacacttttgaatctcagtccgataaaaatagaagtcacaactAAGAAAGTCACTCAA
GGCCGGGCGCGGTGGCCCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAGTCACTCAAaaccatgcaattacatggaaattaaacaacgtgcttctgaataaaatttaagctgaaatcaagaa
gatatttgaaaataatgagaacagagatacaacataccagaatctctagaacacagcaaaggcagtattaagagaggaattcacagccctaaatgcccac
atcaaaaaattagaaagatctcaaattaacctaacattacaactgaaagaataagataagcaagagcaaatcaaagatagcagaagaccagaaataacta
acatcagaactgaactgaaggaaattgagacagggaaacctattcaaatgatcaatgaatccaggagctgtttttttttttgaaaaaattaataagatat
ataggccactagctagacta UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 551 216 NA intergenic
689 chr9 13645422 13645745 RIP_Alu_chr9_013_02 0 + pAlu9-13645322 NA NA SINE Alu Yg6 cagtaagtaaatatctcaactttgctggtaaccagaaaaaaaaagaaaagccactattaatatcacttttgtcttttatattggcaagaatagcaaaggt
tacaaaacacaaggaagtgaatactttgcactgttgatttgagtggaaatgtttaaaattttttcaaaagcaatttggcaatattaatacaaaattaaca
tgaaagcatcctttggtagcaaaccagagaaataactattcatgaatattttatatctgtatcattatattggtatctctatatctttttccctctctat
atgcactacagttttgtgatagtaaaacaatgtagttaattacctcaataagtgaagttatagaagaaattaaggtatacccataatataaAACACTTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACACTTGGtaattctgggggggacaatttttttaactaagtatgccatagcaagattcccaagacatattgttcag
cgaaaataaaaaggtgtaattatttatttacaaattgaaattttaatacaaaaatatctgttcatgtataccaatatatagtaagggaaatagtagtaca
cattctgaattcctgacagaagatactataggaagggcagttggaattaaaagtgggagaatgattaaggagatttttctaattttacctcgttgactat
gtttggatgttttatcataaaattaaaaatgaattgatgagacttggacttctatccaagacggaatttcagcaaatggagttacattccagcctaaaac
aaacaaaaatggaaaaaatatct UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
690 chr9 13830787 13831082 RIP_Alu_chr9_013_01 0 + Yc1RG103 GGCATTTGCATTCTGATGCTTA GACATGTTAGAGAAAAGGTGACATC SINE Alu Yc1 acgagtacgtgtctgtatgcgtaacaagtaggttactgacagacatgtcaaaagagatagataatgaaaatacaatggccacaatttgaaattagatatg
caaattaaagccatttctccctacctaggaatttttctgagttgctgagaaaatagcaaaaatcggattgggaatagttttgctttattttcaaaattat
ctgtaatatttcttctatttattgtaaacaccttaatgataggtagaatgccatttaagcactttgaagtcccacaatgtgttattgaagctaacatgaa
aatattgcttaaatgctaattgtgtttgtggacatgttaagtttttaagaaacagaaataagcaggcatttgcattctgatgcttaaaaacCCCTGTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGACACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACCCTG
TTTAgtgttttaatctaatgttgatgtcaccttttctctaacatgtctattccaactaaattcatattaaatttcaaattcataagacaatgcagaaagc
acagggtgtgcttgtcacacgggtggcttcaggaagagccattttaacctaaaacctgagagattagtctagacccagataaagaaaaaagacagaagga
aaagacagaaacaaggaaagagggagaaagacagggaaggagggagagcaggaaggagggagagaaaggaggagggagggaagaagaaaaaaaggaagaa
agaaaaggaagaaggagggaaggattccacttttccagactcctgaggttggaggaaaggaccttccaccagaagtttgttccttatgtatccat UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
- Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 60 383 79 NA intergenic
709 chr9 16379407 16379730 RIP_Alu_chr9_016_02 0 + pAlu9-16379307 NA NA SINE Alu Ya5 tgggctcctcacctctctcttgcaagattcctaatttttaggcactcttacttggtttgatatagctaaaactctgatacctttcattgtccttcatgat
tttaccaacctccttggttctaacaattggagtttaagagttactatagaaaatgttctgtattttaatgtacaatatgattgctggccatttatataca
aggtatagacttcaaaggaacagagtaggagtgatcaaatgactgaattatccaagtatttcttccacaatcccttttttggtgtggggtcattgtcttg
gtgcatgtagacatctgcgcgatagagcaaccaggggagccgcaacactcagcccagcctaagcctttgtgtacaggatcaggtcctAAGAGTGACAGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAGTGACAGCCatctccaggtcatattcttccaaggaaaagtcagtggtaccatgaaggggctgggtaagcattt
ggaagctcacccagaagagggggcctcattggtccacgcctgtccttctgaaggcccacagttggacctggggccgccccctccgggatggcttcgtgtt
aattatgatgcaatcccctggccatgcagcctcagcaacaatttcgggagtcagggtccatgcgcaaggccattaacactaaacatgttttaatccataa
ttgtgtgagatttatttaatttaggggctttatttatagttcgattggaattgtaatgtattttcagccctccgcactgtgatctgtcaatttttatggc
gtcttttaattgtgttcttccag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
710 chr9 16453294 16453593 RIP_Alu_chr9_016_01 0 - 52451 NA NA SINE Alu Ya5 cagcctcaagtagctgggattacaggtgtgcaccaccaagcctggccaatttttgtattttaagtagagacaaggtttcgccatgttggcccaggtggtc
tcaaacacctaacctcaagtgatctgcctgccttggcctcccgaagtgctgggattacagacatgagccaccgggcctcccaaagtgctgggattacaga
cgtgaaccaccatgcctgaccctatttttgtctttttcagttgtgaattttgtagttggaggaggaattagaaaataatctcctatcattgttaatatgt
aaccgtcatttgcaacaaatggaaatttaattctgtttttgtcagtgcggtgagatagcatcaagtatacccttcatttggatagattagtcAAGAATTT
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATTTaatacttgtatgctcacagtggcaaattttcagcatagtcatttttgttaactttccaaaatgttgtcagaacgtgctgtcattcactctcat
tcaatctcctgaaagttaactcctgtctcattttctgtgagatgatccatgtttcctgttacacacacagtcagtacactcttagtgtactagtctccct
gcacacctttcagaacaacattgctttcagtagtaaaaatggaaagagagaggccagtggagtaatgtgaggaaagaaggaaatgggtgggctgcggggg
aaatgatcagttccccagaaatggtcggttctggagaaggaagaggatagttctaaaatttgggcataaaactaggacatcaaacaagcctggatgaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
726 chr9 18498900 18499229 RIP_Alu_chr9_018_02 0 + Yb8AC1480 AGCTGAGCACATATCCCAGAA > SINE Alu Yb8 atcttttaagttgtcaagcacctaagaagctatttgttttcttgataatttttatttgcaatctagatctttcactattaacagaaattcctgggttaca
gcctcatgtttcaaaaagctagctttcagctatcaaagttcatggagacacctagcattcattaaactttcagttatagtcatgtataaaaattttaatt
ttcattaaaatacataactctaagcagtaagaaatattaaataagtacttataaaagcaaaatataatattaataaaatacattctaacatttttctcat
tactacttgactgtaattaggtcattgcttaaatatggccctaaatcagtccttaggctggatttagaatgtattttgactcttataatttAGAAATAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATAGAtatgttctgggatatgtgctcagctttaagacttcgaatcagtttgatttttaaagttttca
agttttttccctcaacaactggttctatctattctagtaccagcaagaatttattagtttactccccttacttccttacgctaatggtaactctaattgg
tgtagcaattattcattgccacagtaatgctgcataaaaaccactaatcctcagtggaatatcagataaggaattattgcttggctaggcagctctgatg
gactttgatggtcttgatcacatatctagggttggctggatgttggctgatctagactggcttcatctggttcaacttgggaaacccaattctgctccac
aagttccttatcctccagcaggctagcct UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 426 113 NA intron
727 chr9 18741839 18742116 RIP_Alu_chr9_018_01 0 + 238417|pAlu9-18741739|Ya5ACA1841 TGGTCAGTGTCTGGAGCAAG CAGTTATGCCCCATGGTTTT SINE Alu Ya5 caggttccctcaactgtaaaatgaaggtaatcaatagagcttatctcatattgttctggaggcaattaaatgagataatgtgttaaggtgccctctatga
tgggaggtctcatcgatttgctcatttaaccaataacattaactatctaaaaggtgttctgatggaccctgcaagtaatacaaaactgactcagatgcgg
gccctacatcaggaggtatacactctagcagtgcccttgacaggtagaataactgtaatacaactgagaaaatggtcagtgtctggagcaagtatggata
cagtgttttaaatatggattatatttggatatatagaaatgaaagacattttgaagggcaaggaaagggcaaaagatattccaaAGAAATACAACTTGCA
GCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAA
TTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGA
GATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATACAACTTGCAtaaagac
acaactagaaaaccatggggcataactggagaataacaaacagattattacagatatggctaagcttagtgtagatgaaaggaggtagtggaaacaggtt
ggaaagttagttacatgtcagagcagtaggaaaagattgagtgcatacacttaatattacagtctgatgaaaaacattaaggccaaaaaattttcaacca
actttcaggacaaaagctaggtgggactagctactagaggatctacttaccatgttttcttggccaattcctgtttgtaaaatctttgtgcctcagactg
taaacagaactttctaaaactgatctttagaagatgcttctgacgtacagcctgagccactgagctttgtccttatc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Genome comparison|Trace comparison|Candidate screening NA 55 456 166 NA intergenic
752 chr9 21908069 21908371 RIP_Alu_chr9_021_01 0 + Ya5NBC184 CTTGGATAGAGCTGGAGGTCATTA ACCCAAGCAGTTTATACTGTACCC SINE Alu Ya5 aaagtaatatgcagattccttaaagaactaaaagtagaactaccattcaatccagtaatcccactactgagtatctacccaaaggaaaagaagtcatata
aaaaagacacatgtacatgtatgtttatagcagcacaattagcaaatgcaagaatatggaaccaatctaagtgcccatcgaccgagttgataataaaaat
atggtatatatgtatatgccatggaatactactgagctataaaaaggaacaataataatgtcttttgcggcaacttggatagagctggaggtcattattg
taagtgaagtaactcaggaatggaaaacccaatattgtatgttttcacttacaagtggaacttagctataaggatgcaaaggcatAAGAGTGATTAATGG
GCCGGGCGCGGTGGCTCCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAGAGTGATTAATGGactttgggggctcgatgggggaggtttggaggggttaagggataagagaatattgggtacagtataaactgcttgggtgacag
gcacactaaaatttcagaaattagcactaaagaacttacccatttaaccaaaaaccatctgtacccccaaaaactattgaaattaaaaaaaaattgtgat
tgatgtggtttcgctgcatcctcgcccaaatctcatttgtattttagccccaataatccccacatgtcatggaagggacctggtggcaggtaattgaatc
atggaggtgggtctttctcgtgctgttctcgtgatagtgaataaatctcacaagatctgatggttttataaaggggagttcccctgcacatgccctcttt
gc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 60 522 205 NA intergenic
760 chr9 22989503 22989819 RIP_Alu_chr9_022_01 0 + 401|pAlu9-22989404 NA NA SINE Alu Ye5 aactgaaaggcagagaaatgtaaaggagattttcatatcccctaaggtttcaagtttctgtgcttaaggatatagcgagagagcactaccccacagaaat
caagaaacgataacaaaaacaatacatagtaccatctctgcagattactaggaagagacttcccaatttattcaatttgtacaattcctttacccacaga
ccttgttttcctaaaacagaagcacattacaaactaatcatttaaataagtcactctgatgtcttgctgacacaggagaggatttgtatacattttcaaa
ctgttcttttttgtttctgatagggataacataatgtgccagcactgtgtcctgacaaagaaatctaaatccattcacaggcatAAAAAATTTGAATGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAACAAAAA
AAAAAAAAAAAAAAAAAAAAAATTTGAATGCCagatccagaagaggcgcgacagtgtttggtaaatctgtgaatagacaaagatttagattatacaatcc
actattcagaactagctacataagttgtggggaacagcacaaaatgaaaatgtggacacctttgttcaaaaatggttaagaatttcaagatgtcaatagg
agagcattaaaccaagtgcagagtcctaagcatggagccataagcttgggaagctgcactgccactctccttcccatccattagtggaaaaaccaagtct
attttgtctaaacacacggggactgacacagaataggtgctcaacaaatatatgctaaataaataaatatgctgactataatttatactttacctatcac
atccaacttactaatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
783 chr9 25967740 25968048 RIP_Alu_chr9_025_01 0 - Yb8NBC522 TTCTGAAACCTCTCTGTCCTACAA GAGCCAGGAACAAATGAGGA SINE Alu Yb8 gacggtggagcatcaatgggttgaaagaaaataaacttgagcataaactttatatttagttaaaatacactttagaaatgaagttgaaacaaatttatat
attttacataaatccatactaaaagagttcgctaccagaagatcagcagagagaaaaatttcgtaagtgaattggagagccaggaacaaatgaggaatat
cttatacatcctttttcgttcattattttcatattctagttcacaaacttagtttaaatgttaactactttaacttgatatatagaatatttgtctgttg
tttttggcatagaaaatgcatatttatctgaaaaagttaacaaaaaataaaaactgtgtttatgattgagcaaatcaatttgtattttcattAAAAATGT
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAATGTaaatgaattataaaaaattcttattcatagttgtaggacagagaggtttcagaatttacttttcactttactacatcattacat
gttcttagttttaaaatttcttgaaatgtatctgaccaaaatgtaaagctgatttattttatgcaatttacaactctttagtttgagtttcaacagttaa
cataaaactgcatgtgtatattttatgtgtcaataggcatgaaaattatttcagtggatagaaggcattttttcatatttggatcacctacggaatgggg
gtttctaagctaagctaaattcatatcaatctgaacagctaaaaattcaggtaattcaggagattccattatgtatgtgaatttagaataccaaaaaatt
taaactgt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 594 278 NA intergenic
787 chr9 26502938 26503242 RIP_Alu_chr9_026_01 0 - Ya5ACA1861 TATTTCCACCAAGAGGGAGC GGCTCGGTTGGTTGTTTTAG SINE Alu Ya5 cttctgagaagtagttcgttgcttcatgttgataactcaattttgttctcaattcaaagccttccagtcgatatattttaatttctttttctctttttca
aacactttagctaactggagtcttgttttatccctagagaacaacttcaggtgataggtagatggcatggatacctgctgttagctttgtataagaagac
aacagaaatgggatcactgtgtatgcatgcccaaggtgaaatagatatcaaagtcagtttcaaatatttccaccaagagggagcagaaggagtagaaaag
ctatccatacaataaaaagaagaagaaaaggaaaggaaaaaaaaaaaaaaggagcacaacaatttccggtaaagttaatagaaatttttAAAATGCTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAATGCTTGAatatatgtttctaaaacaaccaaccgagcctgtgaatttagataaacatgctcagatctcttaatgcccatgctggttgtgcatg
ttaggcaacttgcttccacctgtaaaccaaaattgtgaatctgaccatttcttaaaatatcagatacctgttaggttaaaaaaaaaaacaacctcacaaa
aattttacttttgaattctaagccaggatgaaatttaatcgcagttataaatcctccaagcaaggatttgtctggaattgccaacatcacccctagttca
gcaatgcaaatgacactgctataatataagaaataagaaagctttcagtatgttgtctaagaacttgagcacattgaaagtgatttatgagccagcagac
taaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
Candidate screening NA 60 481 166 NA intergenic
803 chr9 28574935 28575011 RIP_Alu_chr9_028_01 0 - 15754 NA NA SINE Alu Y? taataatcttccctaataattggtatccatagctctcctctcagcagtcctgggacttgaattataccataccctcagtctaaggagccacagtccaaga
aacaacactaaaatgtttccaaattggtcatgctccttagggttgtcagatttatcaaatagaatacaagatgcccagttaaaacagaatgatttccaat
tacctgtgaatacatacactgagattttaaaaatgttgtctgggatatacaaataataaaaaacactattgtcatttacatgaaacgaattatgagtatc
taaattacgtgtctctttccttgattatacttctgtgatgactcgcctctttttaacagttccatgatttacaaaatttgttttAAAATCTCTTGCAGTC
GTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATCTCTTGCAGTCacagtcta
tattacatttacattgcaacacaactgtacagtagtcacatcagccttatttagttattttgtccattaagcattcattaatgaaaaaatatgttaaact
tagtgacaaaataatagcattctcatgaattttaattttctttctgatctctcttcaacagtataaatgatgactctgcatgttctcaagctagtgatta
tttaataacaaccatgtaaaaaattgaattattcaagtgataaaatctattataagaattagtcatcgcaggagccttaataattatccatttcaatttg
gaatttcttttcctgtttataagtaatagtgtatttatttcgacacagggataatttttttttggtcaattcctta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
810 chr9 29614706 29615012 RIP_Alu_chr9_029_01 0 - pAlu9-29614605 NA NA SINE Alu Ya5 cccagactaaaagacactgtggttagtgattgcagacaggaaacaatccatcaactgagggagaatgcagcactaaggacactaggcaaggaatatgata
caaaagtactttcctactaggataaaataagcaaacataaaattcattctgagcacttccttccttaagcaatattattaagggctgccaaaagcaaagt
ctcactactcagaaaattactgagaaaaaatgaggtaaggaaatatgaaagaactgagactaatggataaaagttaaggataatctagaaaaaagtgaaa
gccaatcttcatcatatatatacacaatttatgtttatgtatttatagagaactaacaaacttgcactgagcaaccttttttaaaAATCTACCCAGGCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAATCTACCCAGGCTTatggattcagccagatcacctcatcaagaactgattcctttctatgattttttttttgccgggaaaaatgtgagttttg
ttgtgtatataccattgttactttcaccgtgatatgcaagctttgactatagcatatcgttataccctatgtgtctgaccccaggagacttgggtgggga
agaggaagaaatattttaagcttgcagctaagccagaggaaatggatattagatttttcaattttgtgtgtttgagaatagttaataaaactaagaaatt
agatcagtctctttgggagcatttttttaaactatgaaatacaaagctatgggtatggataccgaaccaacatttctgaatcccacgaatttccaggttt
aaagtt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
817 chr9 30481298 30481595 RIP_Alu_chr9_030_01 0 - pAlu9-30481193|3576 GCCTACTATTAGATAGCAGCTCC GCTCTACACAGACACCATTGTAG SINE Alu Ya5 agacatatcataatgaaaaaattgagaaaagtgaaaaaattaattttctgcaatgaaactttgatgtagtaatagaacctttatttgcttacttttcttg
atatcccaaatgctctacacagacaccattgtagttaagaaaagactctgggtaaactaattttgttatatatgaaaatactgttagttttatttcaaaa
attatccaaaaacaaataaatatgaattatgacttgaggtacaagcaatcaagtattttctcctctgtacatgtgtaatattttatttataattttaaaa
tagcactttatttgtttcattgtggattgattagttaacatatctcctttgctaggttgtatataactccagcacatactcaatttAAAAAATTATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATTATTTTTgtctttttatacaaagcattgattcattaaatgttaatttatgaaacatagcataattttggtaatctcactttgtcatttttaaaatg
tccaaatctaagaggacgctccaatattattttctttttacacatttaaatatttaaggtaattattattgcaatattttcaattatacattctcaatac
ttcatagtttttcatgcaaatcaagcaattaagatcaattataggagctgctatctaatagtaggctataaaaatgagatgcattaacaatttttttaaa
tgaaatgtactcatgatttaatgccatgaaaagtttaattacataactcttattaactttcacaaaacactgtgttcattttacacataaccaacag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping|Genome comparison NA 0 0 0 NA intron
831 chr9 32305161 32305380 RIP_Alu_chr9_032_01 0 + 2076 NA NA SINE Alu Ya5a2 aatggataaataaaatgtggtacatatacaaaatggagtactattcaccacaaaaaaagaatgagatcctgtcatttgcagcaacatagatggaactaga
ggtcattgtgttaagtgaaaaaagccaggcagacaaagacaaacttcacatgttctcacttatttgtgggagctaaaaattaaaacaattgaactcatgg
agatagatggtagaaggatggttaccagagactgggaagggtggtgggggtttagtgggggaagtggggatggttagttggtaaaataaataaatatata
atagtcacaaagaatgattaagacccagtatttgctagtacaacaggatgactaaagtcaagaataatttaatcatacattttaaaataactAAAAGAAT
CCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG
CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAATataattagattgtttgtaacacaaaggataaatgcttgatgtgatggataccccatttactataatgtgatta
ttacacattgcatgcctgtatcaaaatatctcatgtaacccataaatacatacacctactatgtacccccaaaaaaactaaaatttaaaattgtttaaaa
agaaatgctagtgagccatgtagcaagaatgagaaggtgggtggaggagtaagagacagagagaaggagagaagaaaaaaaggaagggttgggggaagaa
gggaagaaggaaatattgctttgaatgtgtttaataaaaaggctgcatatcaaaaataatccttgaaaaaagcaacatgacataaaatatgaagtaatag
taatctggacctaaagtgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
858 chr9 35793108 35793399 RIP_Alu_chr9_035_01 0 - Ya5NBC240|Ya5ACA1878|238279 AAGGGCAGACATGCCAAATA TCAGGTCTCTTTCCATCATCTCT SINE Alu Ya5 aataacttcatgagaattcagcagaaaaccaaagctagtttcagatacagtgtggggtgatccactgggatgctcattggctatgagacttatttcagaa
aacctgtccaactcatgcaagattctattttatgctccacaaatccatgggcctctgagtcatttgaacatagctaaaacctagtataacagaagagtac
caaaggtttttagtacaatcttccttggtttctcttagttctactagtaaatgttccttttttaaatttcagttttctgaacaaaagggcagacatgcca
aatattggtcagagagtaaaataatgagaggaaaaacaggagataaatatgttcggagagtaaaataatgagaggaaaaacaagagatAAATATGTTCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATATGTT
CAGagactccactcattttatgagttcttagaggtaaaagagatgatggaaagagacctgagatatttaagacagaaagatagaaactctctacaggcac
aggactccttgtggcaggtaaaactcactgtcccagttataagccccagactccttgtttacccattattaccagaccatgggaataaggggagatgaga
gaacaggacttcagaggactagaaggagaaaaaccacaatcaaagaacagtggaagtgatttaaagtggatgaacttttaaggagtggggaagactcacc
ttaacaaggtcattaatgagtgaataacgaaacatccagtccaagttgatgctgtcattttctagaatatcctggtaagtgacatggaata UCSC - Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Selective database search followed by genotyping |Trace comparison|Candidate screening NA 55 505 202 NA intron
895 chr9 40746357 40746668 RIP_Alu_chr9_040_01 0 - Yb8AC1472 TGAACTCTTTATTGGTTGCCA CATTCAAGGAAACAATGGGG SINE Alu Yb8 ggataattttgttcacaaatatagatgcaaaattctatgctgcgttaaagctattttaaagagcatattttaggactagtgtttatttccttgtgtctaa
atttcctgttttgcatttgcttcagctaagattgttttgggctaaacttatcttcctacacagacccttgatagcatgtaaatcaaaataatcataggca
tatttaattatatgacatttgttgtctctacactaaagtttttctaacattcttaaattttgtctacataatgaatatatttttaacagaaaaaaaaact
ataggtttgattgcctgcttatttaaataaaaagagaaagaagagatagaagaactatgaactctttattggttgccaaacaatAAAAATACCTTTTTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAAA
AAAAAAAAAAAAAAAATACCTTTTTGGgaaaaaagtaaaccccattgtttccttgaatgtgcttgttctttcagctcagtcctaagagtggatgattact
gagcacagggccctgagatgaactgagggactcgcatctcattcaagcctcacaaagcagtggaaggattaacgttttcttcattttataaagagcacac
tgagactaagaatggttgattagtttgcccaagttctcaagagtagtaaaattttgagccgttaatttaaaacagaccatctggaggtagactagagctg
agaatgatctcaattaaaggaaggaattctgtcactttgtgaagttttatgaagagataagatagaaaccaacctactgagtattaaacaaaaggctatt
tcccgaaaaca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 412 81 NA intergenic
896 chr9 40772871 40773178 RIP_Alu_chr9_040_02 0 - pAlu9-40093744 NA NA SINE Alu Y aagtgtggttaatatatgggtattcgtgcattttatgacattgtgtattaaaagatacatatttacaatactacattatttaactctctaagtagatttc
tatgtagtataatactgccattatgttttgtctttgacattgcatattgtcaattttattcagtttatttagtgcatactttatgtaaggtactctcata
ttcaaaaattcttctaataaaataaatggacaaatcaagaatgtatcaaagaatatgagttctgtcttgatcattggtatagtttggatatttgtgccct
ccaaatctcatgttgaaatgtgatccgcaatgttggaagtggggcctggtgggaggtatttgcatcatagggatgggttcctcatGAAAAGCTTGGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAGGATCGAGACCGTCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAGATACAAAAAAATTAGCCAGGCGCTGTGGCGGGTGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGCTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAGAATAGCTTGGTGTCctccctgtggtaatgagtgggctctggttgtattagttcacaggaggtctgattggtaaaaagagtctggcacttcgt
tccctctctcgccacctgagaggccaactcccccttcaccatctgccatgattgtaagcttcctgaggcctcaccagaagcagatgctgatgccatgctt
tttgtacagtctgcagaactgtgagccaaaataaatctcttttccctataaaccactcagccttggccggccgcggtggctcacgcctgtaatcccagca
cttcgggaggccaagacgggtggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaaaa
aattagc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
902 chr9 41590315 41590620 RIP_Alu_chr9_041_02 0 - pAlu9-41588821|pAlu9-40699651|pAlu9-40496918|pAlu9-40700328|pAlu9-40497593 NA NA SINE Alu Ya5 gggattacaggcgtgagccaccgcgcccggccaaaacacagatcttatagcaacaagaggaaagaactatgggccaaattttcttagctatgcttgaagt
aaactttgacaactaatcactctttattttatttaagaattcccaaccaggagtaaaagtccaaacctgacttataaggcatataatttaaaaaataata
aagtgaaataacttaatacaaataacaaaatgttgaaggtaggcatgttaaatccacactatcagattgggttttaaagagaaggagaggagacttcaag
catttagaaatcaataggaaaaagattgttctatttttataccataatgcaaaggaggcagagtgattttaagaacattgaagttaaAAGCAATTAACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAGCAATTAACTTGGggtaaaataaaatagaggtaggtagataatcagatatatgtaaaaacaaacttcaaaaattattttaacatcataatttt
agataaattgaatcagtggcttattcttgaaggtatagtagcaaatgagatgactgttaagtaacaaacaactttttgtttgacatagttgaagttagta
ccatctgtgtgcaagagacaccgttcctatcacacagatagcatgggaaatacctgcctgcatgattcaattacctcacaccaggtccctcccacgacac
gtagaaattcaagatgagatttgagtgggtgtgagaaatctactcatccatccaaacccaaagaatggacttagaggcatgaagaaaagcgaaagtgaga
cttaata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
903 chr9 41760215 41760216 RIP_Alu_chr9_041_01 0 + 52556 CACAGGCTCCTCACATTCAGCATG GGGATGCTGAGGCAGGAGAATCG SINE Alu Ya5 tgttttggggttccaaatagaaagcatcttgaataacgtagattaaataacagtaaatgcaaatgcagacaccaaacatatcctagaggaatcttggaga
actttagtcttgctgctttttatttttacatctcatcagcagtactgacgtttcatcaggatcaatggagaattaacaatggagttaatattttttccct
ttattagtttggggaaaaggtagatctcataatctggtgtactccttttggaagcttttcatattatcctatcctttatcacaggctcctcacattcagc
atgtcctaaaccaaatattttttctcctacccattgactcctccccctatgattctcatcattatcaatggaatttgacttAGAAATCTATTCCTTTCTC
NNNNNNNNNNAGAAATCTATTCCTTTCTCttctccttccctatagtcaatcattaaatcttgtagatattatctcctatcactgatcatttgatataact
caccaagtttcactaataataatcaaagtggtaatacatttgacaaactccaaaaaaagataatttttttctttttctttttatatggggtctcgctcta
tctctcagtctggagtgcaatggcatgatcttggctcattgcaacttctgcctctggggttcaagcgattctcctgactcagcatcccaagcagctggga
ctacaggcatgcgccatcacgcccggctaatgtttttcgtacttttactagagacagggtttcactatattggctaggctggtctcaaattcctgacctc
aagcaatctg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1110 chr9 68932715 68933020 RIP_Alu_chr9_068_01 0 - Yb8AC1483 TCTGGAAGAAGCAGGACTCA CTAGCTCTCCGCAATCCATC SINE Alu Yb8 gtaataaagtacacaattcttatacaacctacataagcaagcactacatttaaggtagcgccttcctcctcttgttttctgaggatgccctactctgtaa
ttgagtagcctctaattaactatcttaacttcattatactctgcgacttaccctgaattctttcccaggcaagatccaagaacactcttggggtctggaa
caagaccccctttctggcgtcaggactgggcaccagatctggaagaagcaggactcaggccgggtgcgttggctcatgcctgtaatcccaacactttggg
aggccaaggcgggcggatcacctgaggtcaggagttcaagaccagcccagccaacatggcgaaaccccgtctctactaaaaatatAAAAATTAGTCGCCG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAATTAGTCGCCGggtgcggtggctcatgcctgtaatcccagcactttggaaggccgaggcggccggatcacgaggtcaggagatagagacca
tcctggctaacattgtgaaaccccgtctctactaaaaatacaaaaaaattagccagtcatgatggtgggtacctgtagtcccagctacccaggagcctga
ggcaggagaatcactggaacccagaaggcagaggctgaagtgagccgagatcgtgccactgcaatccagcctgggcaacagaacaagactctgagaagaa
gaaggagaaggagaaggagaagaagaagaagaaggactctgcaggtggcacacaaaattagatgaaaagaataaggggaccttaaagggggaagaaaaaa
atggg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 60 988 668 NA intergenic
1111 chr9 69007495 69007798 RIP_Alu_chr9_069_01 0 - 238617 NA NA SINE Alu Ya5 ggctgaggtggatggatggcttgagctcagggatttgagttcagtctgggcaacatggtgaaaccccatctcaattttttttttttttttggagacaggg
tctctcactcttttgcccaggctggagtgcactgatacaatctcaggtcactgcaaccattgcctcccaggctcaagtgatcctcccacctcagcctctc
aagtaactgggaacataggcgtgcaccaccatgcccagctaatttttgtcttttgggtagagatggggtttcgccatgttacccaggctggtcttgaatt
cctgaactgaggcaatccacctgccttggcctcccaaagtgcagggattacaggcctgagccaccgcactcagctaaaaatgtttTAAAATAAAGATACT
GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAG
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATA
AAATAAAATAAAGATACTttttaaaaaataattatttgcaaaatgctgtgtacgtttttcagaagaaaagggtctggtcttacaattctttttatgttat
ttacatatgtttgtacaaacacacatttggatttcagtttttaatataagtgataattgtttattcactcaaactatgcagtaagtagatcaccaaaaag
tggtaaagtacaactaaaatgtcaccatccagagccaactactgagcacctttccaggtatctctctgcacagacaagtaggtacatattgtacacaact
tagacacctggggtatacacttgggatacaccaaatttgctcttttgcaacctatttctacataagaatagagtttgactatttgtttcatgaactagat
ctc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1124 chr9 70693165 70693467 RIP_Alu_chr9_070_01 0 + Yc1RG291 AACAATAGACACCTGAAGCCAAA TCTGTCAGTTTTGGCAGTATGAA SINE Alu Yc1 agataaatgagatgcagccaggaaaacaaaggatttgaaaacatgaaaggaaaataaaggagcttggaggagataatcagaattataggtagaagtaaaa
gagatgatggggaggaggcaatattggaagaaatattggctgagtattcctcggaattatagaaagataccaattctaacatgcagaaagttcagtgaat
tctaagcaggataaatgaaaagaaacctcacttacatacacatcacatgtaacaccaaagggaggggaaattcctcagaagtggctggaaataaagacag
atcatgtacaaagaatagtcattagactgaagacctactcctcaacagcaacaatagacacctgaagccaaaaccttccatgtgtcAAAAGAAATTACCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAATTACCTgtcagtctagaattctacattcagcaaaactatcttttaaaaatgagagcagattatagatattttcatactgccaaaactgac
agagtttacttctaggcaccttcactgaaggaagttgtttttgttattgtttttgtttgtttgttttgagatagagtcttgcactgttgcctgggctgga
acacaatggcatgatctcggcttactgcaacctttgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccac
caccaggcccagctaatttttttgtatttttattatagacggggtttcttcatcttgtctaggctggtcttgaactcctgatcttgtgatctgcccacct
cg UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 64 454 138 NA intron
1130 chr9 71498948 71499220 RIP_Alu_chr9_071_01 0 + 15030|Yb8AC825 GCAGGAAAGTTCTTTGCTCTTT CTGGGTTAGCCCTTATTCTTTGT SINE Alu Yb8 atacatgtaactggaaaatgagattttttattatagtttttaagttaagaatagaataactaatttattttacttgaaaaaatctttttacagagtttct
tcttaaattttcatcttaaattacacctttctaatttaaatgaacagtttttatatactgattgtattaattgaaataagaacaaaatgaccaacaaagt
ttatttttttaactaacacacacacacacatacacacaattctctattatgaatattttaacaaatgtagtttcctaaaacaaacatacattgtctcaag
tttacaagtcaacattcttgcaatctctactaaacaaacttttacacatggcaggaaagttctttgctctttcaagtaaatagtcttagAAGAGATCATT
TTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAGATCATTtcatgataagtaaagac
aaaagaagcatagataaattttataatcatggcaactggaatgtaaatattctctaagcttctgcattatctttttcatctaaacaaagaataagggcta
acccagtgtttgggattctcaaaaacactatgctaataacctcattgaagttttttattacgtattactgaaccatgtggcttagagtttcaactataat
tttaactgaagctgattctaagtatttgaggtaaataatgttctatgatatagaacattaaagaatctataggcagaatctatggccacatagtagcaat
tcatgttaattcttcacagtattccattgtataaagatcctacattctaatctactctctggcaataagatt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Trace comparison|Candidate screening NA 60 456 175 NA intergenic
1141 chr9 72899084 72899350 RIP_Alu_chr9_072_01 0 + pAlu9-69239549 NA NA SINE Alu Ya5a2 ctgatgtttcaggctgcaagctgtaagagagggaagtgattatcctgtgtacctaatggcagcttcacaatctctgtaaacagaaagatggtagaagact
atgcatatgctgtcccactgcaacacttactgtcacagagattgacacttccattctccacacctaggcattttgaaaccactataagaagaaatacagc
aagtgtatatttaataacatttattcttacttagtataatcctaagtattctattaataatatcctaagaactggtgattataatgaatattgagtaatg
tgcaaacaaactgagttaacatgggtgctcctaaagaaataccatttgtatggaggcacttgtttaagctgaacgagtatgtaacttAAGACTTGATATT
GGAGATCGAGACCATGCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTA
TTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG
ACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTTGATATTatgggaaaattcttcatattt
aattaatctaaagcataggtcacaaactcaagcacctattgagcaatgaaaaatacgaaaaataagtgaattgcacttggtgaagcactgtgaggagggg
aggtcatctgccgcacctaactcggctcagtaaaccgttggcaagcaggacaatgtcccaatgttgtcagcttttacaattataaaagagaacctggaaa
tgcatattttcatgtgaaatctgatttttaaatgttagcaatagtgaattatttttaaaagattatgagagcaaaccaaaatgtattggaggactgtgta
cagaactaatcctctaggtctgtggtctctggtacagacagaaaccagtttctccttctagagaga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1155 chr9 74753566 74753914 RIP_Alu_chr9_074_01 0 + Yb8NBC627 ATTCACCATGAATTGCCAAG TTTCTTTGATGAGGGGAAGTG SINE Alu Yb8 aaaaaaaaaactcacccaggacagaggaatggcagatttattgtatttagataaatttctgtctagcatcctgtgaataggagcttgagatgatattgta
aatacatggcttctcttaggacataccgtggcgttccacgccaccaatagggtgaagtggattgtgcatttcctgccaagcagccaatgagagtcaaaac
tgggtctaaaatactgtgctgtaaaaagaacttaagagctagttgtcagttgtgtttattatgctataaacttttaaacatcactttcctgatcgccctt
agattgctagtttagaagtagattgatgattcagagttcttatcatccttcctgagatattcaccatgaattgccaagttatttttaagaaatcaATGTG
TGGCAGGTGCGGTGGCTCATGCCTGTATTCCCAGCACTTTGGGGCACTTTGGGAGGCCAATGCAGGCAAATCACTTGAGGCCAGAAGTTCAAGACTATCC
TGGCCAACATGGTGAAACCCCGTCTCAACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCA
GGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGCTGGGCATGGTGGTATGTGcctttaatcccaactactcaggaggctgagacatgagaatcgcttga
acctggaaagcggaggttgcagtgagctgagatcacgccactgcactccagcctgtgcaatagagcaagattctgtccccccctcaaaaaaaaaaaaaag
aagaagaaaaagaaaaaaatcaatggatctttctttccctacctcacttcccctcatcaaagaaaacaaattttaactattctagtgttgtaaaactatt
ctaagtaattcagctagttcctctctctacacccacatactgcttttgtctgtaaaatacaacaagtgttctgggtcagtttccaatgttctatgcagtg
cctaaaatggtgggcactagaaggagaaactgagtgatatgactgact UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.PMID: 15588477.
Candidate screening NA 58 607 254 NA intergenic
1164 chr9 75966289 75966592 RIP_Alu_chr9_075_01 0 - pAlu9-72306749|15602 NA NA SINE Alu Ya5 gtagtgaaaaaaaggtcaataataaatctcaatagcgacaaagtttgtttaacacttaacagtactttactcaattgtcattctatcaaacagcaagtga
aaatatcattagaaaataacagtctatcaaaagtgtgttcagagataaattcacatctttaaaaagttttattaatataaaaggaaagataaatgaacca
tgattcagccaataagagtcataaaagaatgaagaggaaaacaggaaagaaattttaaaaagaaagaaagaaaaacagaaaaaaaattactgataaatct
caaaactggacctttgaaaaacagtaataaaaaatttaaccaagaaaataagaagaaaacactaataaattctaaatattaaggcagtcatAAAAACCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCTGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAACCAAtacaagagatgtttatagtattagaaaatactgggatttcttctaaaaatggctttgaggccagatggtttccttcaaacatgcgaga
actctgatcccaagggtctctggagagaaaatacaaattgcaaaattccataatttattttgtgaatttaacatcatctgataccaaaaacttgcagaga
caggccagtttcaaggtcaaaccaacgtgggttaaaagcttgactctccgtttactacccatgttaccttatagatgagaattacatgaaatataccaaa
agtatactttagaaaatgctatttatctgctgtaggtacacaactaatgttagctagctgctgtaataatagcatagaacacacatatatacacacacat
tag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intron
1167 chr9 76354073 76354382 RIP_Alu_chr9_076_01 0 - 1639 GTCTCAAACTCCTGAGCTCAAGCG CAATATGGTCTCTCAAGTATCAAGG SINE Alu Yb8 gggctggggagcataagactccctaaggcaaaccatatgtggaaaaagctccaaatacatatttggcaacaattttatggagctggaaggagtcattctc
aaaatatgaagatgtgacttcaggaaattctgaatgctcctttctgttcaatagttttcataaatgagatcacattatatgtagtcttatttctcaatat
ggtctctcaagtatcaaggatattttaaaaaaccaaacaccaaaactggtaatttgatacagaaattttcttttaatttgaatcatctttattgaattat
aatttttcatattagccatttccatttcttattgtacttctatgaattgttacatcctttgttcatttttctcttggagtcttcatgtttaaaAACTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACAACTATGttagtatgagggagttgtggggagtgactataaagggtacaaggtttcttcttggggtgatgaagaggttctaaaattgattat
gggccaggcgtggtggctcatgcttgtaatcccagcactttgggaggctgaggtgggagaatcgcttgagctcaggagtttgagaccagcctgggctaca
tagtgagaacctgtctccatatttaaaatacaaataaaaataaaatggattgtggtaatggttataataaaaaccacttagatatacactttaaatgggt
aaactgtataagtgaattatctcaatataactggttttaaatattagcataaatcatttccatattaaggtattaagcctccctcttccaaaatctgtag
gcaaatgtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
1190 chr9 79342997 79342998 RIP_Alu_chr9_079_01 0 - pAlu9-61393723 NA NA SINE Alu Ya5 gacagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagtcaaactaagc
ttcataagtgaaggagaaataaaatactttacagacaaccaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagcac
taaacatggaaaggaacaaccagtaccagccgctgcaagatcatgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaagtaacgagcaaa
atcaccagctaacatcataatgacaggatcaaattcacacataacaatattaacattaaatgtaaatggactaaatgctccaattaaAAGACACAGACTG
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGACACAGACTGGgcaaattggataaagagtcaagacccatcagtgtactgtattcaggaaacccaactcacatgcagagacacacataggcttaaa
atgaaaggatggaggaagatctaccaagccaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaaga
tcaaaagagacaaagaagaccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacc
cagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacattaataattggagactttaacaccccactgtcaacattagacaga
tca Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1212 chr9 82263413 82263741 RIP_Alu_chr9_082_01 0 + 21284|pAlu9-78588785 NA NA SINE Alu Yb8 aagttacacaataatatttcctgcagcttaaaccacagaagcactcacccttgagtgctgtaataggtttctagaatttatttaaactataaaaaaacac
aggacgaatggttgttttggctcacgtaatggatcagatatctaggaatgccaaaagcatatttatttactcacaggtagcaaaaacatcatataattct
ttttgtggctgtccaggcaatgtaaattttttttttctgttccagtaaagtgtacattgattagaaattattgttgtaaaaagaccaccactcaaacaga
gggtctgcactaggcaagatatatgaaacccaaagtgcctgttagggtgctgtgaaaatgtacgccttccttttatttatttttttAAAGATTTGTTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTGTTCCAtgcaggaatagaagccttttttgtgtgtggtcatattgctgagaatcatctggtaaat
gagccaagaagagagagcaagcaaataatcttaatcacttgggaatataagaatcaaacatcacattgtgtgcagtaatgaggagaatacattttagaca
ttggtgcaaaaatctaacttctatctttttgctatagcttactcaatttgagctatagtatggattgggattaaaagctctaagttaaatggtggtgtaa
ttatgtgttaacatttcttatatataagtttatttacatagcatatttggaatggctctatttttaatttagtattgaatcgctgcacatttgcaaactg
cttcagatgcactttctgaaaaggtgct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intergenic
1250 chr9 87175580 87175581 RIP_Alu_chr9_087_01 0 + Ya5HS4.65 TGAAGCCAATGGAAAGAGAG ACAGGAGCATCTAAACCTTGG SINE Alu Ya5 agaaaccaaaaacatacaacattggctttaagactgggtggggcaggcgggagccagaaaggtctcaaaaaaccactaaaggagactggaaggagagtga
ggaaattgttattggaggctgaagaaaaggcaactcatacaatatattggtagaacatttaacaacactgtcaaactatgaagccaatggaaagagagat
gaaccaaaaaaaaggactgctcagattgagagcagaatttagaaaacacgttgagaactcaggactcaacaaaagattctcaaaggaagaaatgtcctta
aggcaagtattaaacccaggttgctgcaagtaaaatatagtgtcagagaaaatgttcaaatcaaaagtgcaggcgtaagaccttAGAAAGATTTGAGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAAAGATTTGAGACAgtgcctcaataaccttcttcatttccaagacagaagggcttccaagaatcttaagggatttgttctatagcatttttaat
ctcagtccaaggtttagatgctcctgtctcaaggagaattctgagtgtcgcatttatctaagggattggaattataatttgatgcacaggaaacctataa
ggtttttaaaggaattatattaacttggtctaaaagatacagagatggttcaaaatgaaaagaggtctctgggtccttaacctcttataaagagaaagga
gattgagactgtctcctactcagctgcaagcatagataatttcttatagaaaagaacaggtcactagagagctgagtcaagaaccacagagaaccatgaa
agag Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate screening|Library screen NA 0 0 0 NA intergenic
1297 chr9 93450940 93450941 RIP_Alu_chr9_093_02 0 - pAlu9-89670507 NA NA SINE Alu Yc1 cagacaaacaacagttcagaaaatttgtcaccagtaaatctgccttgcaagaaatgttaaaagaacttcagagagaaggaaaatgatatagatcagaaat
tagaatctgtagaaagaaagggagagtattagggaagtaacaagtgaggataaaataaaaacttttttcttattcttgatctagcagacaagtttgttca
ccaataataatagcaacaatgtacttcatgactacttcatgactacagtttatgagtaagtgaataacaataatatttcaaggtatgggagggaacaatt
aggaatactatttcttgctctacccatagagtgctaagtatttgaaagaggacttggattagtcataaacgtatatcgcacattttaaAACAACCACTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAACCACCCACTAAaaaaaaagttttttaaaaaagcgttattgatatgctgagaggagaaaaaaatgggatcacatcgaatgctcaattaaagcc
agagaaggcataaaaaagattagacaaaaagaaaaaaacaaaacaaataacaggagcaataaacaggaaacagtaacaaatacggtatatattaatccaa
ctacacaaataaccactttaaatatcaatggtcctaaatataacaactaaaaagcagacactgttagagtggattaaaaaacaaataaataaaatttaaa
aaaacaaggaccaactatgttgtctaacagaaaccaacttaaaatataaagacacagattaaaagtaaaaggatgaaacaacactatgcccacaaattca
atagcct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1300 chr9 93809913 93810152 RIP_Alu_chr9_093_01 0 - 52453 NA NA SINE Alu Yc1 cagtggtagccagcctggattcactgtgctggtgcagggctcccccgcctcattcgttcagtttatttagcagatgactcaccagcatgtgctgggggcc
tgggctggtctggggctgcaggaatgtgcatcagctggtcctcgcctcacgagaactccaggacgcaagtgctagtggtatcctcgtttctcagtgggag
aaactgaggcacacagaaggaatgtgcctctgtcactgagcgggacaaggtttgaaccggacactgtgccacctcgcttgcaccttcatcttcatgttct
tgctgtttcctcatgcataactggtgctccctttatctgattgttctctttaaatgacaatgttgttcttactgaataaatgtgtttAAAAGTGATCTGG
TCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGT
AGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGC
GACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGTGATCTGGatcttagttttaaaagctgtgtgcagtggctcacgcctgtaatcccag
cactttgagaggaccaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactagaaatacaaaaaa
ttagccaggcatggtggcaggtgcctgtaatcccagctactcgggggactgaggcaggagaatcacttgagcctgggaggcagaggttgcagtgaaccaa
gatcgctccactgcactccagcctgggcgacaagagcaaaactccgtctcagaaaaaacaaacaaacacaaacaaacaaacaaaataagtaaataaataa
aaataaaagctcagcatcacctagcaattgtggacgtag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1305 chr9 94372478 94372788 RIP_Alu_chr9_094_01 0 - pAlu9-90591952 NA NA SINE Alu Yb7 ttaaaattgcaggaagaaatgactaagtattccttcttttcttgaggctttaagtaggaatccatttccttgcattttacagtttgtaaagactgctcga
attctttatttcatgcccccacccacctttcattttcttttctttttttattaagtttaagtccgggtacatgtgcaagatgtgcaggtttgttacatag
ttgaacgtgtgccatgatggtttgctgcccctatcaacccatcacctaggtattaagcccagcatgcattagctatttttcctaatgctcttcccagacc
tactccatcacccaacaggccccagtgtgtgttgttctgctccctgtgtccatgtgttctcattatttagctcccactcataagcAAAAACATGGTGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAACATGGTGTTTGGggttttccgttcctgcattagtttgttgaggataatggcttccagctccatccatgtccctgcaaaggacatg
atctctttcctttttatggctgcatagtattccatggtgtatatgtaccacattttctttatccagtctatcattgaggggcactagagttgataccatg
tgtttgcaattgtgagtagcaatagctaatatttttaaataatatataaattattatagtcatactggaaacctgtaaaaatgatcagtgaacttgaaga
catagcaatgttgaactaaacaaaacaaatcacagagaaaagtataaaggttaaaaaataaaaagagctctagaatagtttgctgtaatatcaagcagct
taatatttagta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1305 chr9 94393812 94393813 RIP_Alu_chr9_094_02 0 + pAlu9-90613390 NA NA SINE Alu Ya5 tattaaacctataaataaagggctatatgaggttaaacgtattcaaatttctatatggtttaaaacattgaggaaatgtattgacaaacaaacttaagaa
actgcaaccaatctactctggacaaaaatttagatactatctcttcaaaataagctatctagtggtatttacacacattcttccatatatcaacagtatt
tcacatgctcataaccttaaaaataactgaaaagtgtcagaattataggccttacacatttctgtgggcttgaaaaatgatacaatatagattgtcttta
aggcagctaagaaaatgcataaacttctagagtaatcagtttaaaaaaaaaaagagttcataccaaaggtagtaatactacgattAAAAGAGAGCTCAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAGAGCTCAACactgcaggttcttaaaggcaaaagttaataaagccttgtttttggtagtgaatctctgccttgcaaaattatacacatgatt
ctccccccttcatttgcctcttgcaaaaatgtggtgatgaaccaggtttgctcatgcagatgatgatactccttcaaaatggttgcagagaaataaaatg
aagggaatatggttcacttaataatctcataaattagaacttattaccccagtgactcttacatagctccagacaaatatttgagagagatgaaatggcc
ttttgctaccaatatcttatgtgatgcttcactttttggttccttggataactacttacaactcattagcccatttatgccagaggttgcaattttttga
att Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1312 chr9 95345569 95345899 RIP_Alu_chr9_095_01 0 + 12509|pAlu9-91565050 NA NA SINE Alu Yb8 agcagggaaatcttactcctgaatgcaaatgctcacactacttactgctgacgtgaacactcagctcactctgtcacaaacaagatctctacacaatcac
ttctgctttgaaaatgaaattaaatctatatggctactgttgtatagtcacctctctagttgggtctatctgcatttatgaaactgtcgcttcttctcta
gggggagaatctagcacagaatgaatgaatgaatgaatgaatgagagatcaaggacagggcaacagaacaagtgacttatgtcattagtaggcaaagtag
acctggagacaaacagacaacccatagtttcccatctgtaaaatgggacaatcctcatcataaagacattacatccactatcatgttataaaaacaaaaA
AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAagataataatagctattttattgaatcgtaaggcatgcgataatatataacaaatgcctggtacatggc
agttgctcaacaagtgacagtattagtactgagtaaataacatttggcccaagaccagtgagtcatgctgaaactgccaaaagtaagcaaagtgagtgtg
cccctcagaagtgtcctcatccagtccattgaaaaagaaaaactttactccctctcactacacaactggcagctcccataaaactgctaggaagcacact
gcatctccttccaggacttgaaatgggtcgtgttatgcagaaagcaagttatttccagaaatatgcaatgttaagaaaataaatcacattctatctcctt
caacatgtcaaaggtccactgaaaactctt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
- Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison|Trace comparison NA 0 0 0 NA intron
1331 chr9 97840630 97840943 RIP_Alu_chr9_097_01 0 - 807 NA NA SINE Alu Ya5 atcttggcgtttccatgcaaaactctaggcaactgtaatccagctagaacacaagatcatgaattacacgacccaaagcttaaaatagagctgtctttgt
tccatctacaattcaggtatgccacacaacataaatagccttttctgttaaagtgtaaaagtacataatggcttggccagtctgaagaaaaaaattgtta
agaacatgtttaaggctatatagtcaatacatgaatttcaaaagtggatccaaaacaaaatacccccaaaaattctcttctgaaggatgccaccacaata
tcaggcagggagagagcaaagccacagaaatacatctaattagagaggccctgatctttaaaattgggacttacataaaaagtAAAAAGCCACCACTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGCCACCACTTTCtcaaccaattattattgccagtaatttcccccactataaagaaatatgaaaatgaaaatgaccagtaagt
tccagtttccaaattctcagttacttaccaaaggttccaaggtgctgatatctttcagtttatttccacttaagtttagatgtgtgagatttggaagttt
ttcagctaacatgtccagacctccaaagattctattttcactgagttcaagctgcaagagaaaatggacacaacacaaacacaaatacacacagagaaac
agaaatcatttaaggtattgtaagtaacaaatacagttctcaaagatttatcaagatcaaatgatccctatttctattagggcatgcatgttcattttgt
ttaaatccaaata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1334 chr9 98288901 98289199 RIP_Alu_chr9_098_01 0 - 55150 NA NA SINE Alu Ya4 ttggctggaattccaagtactctaagtaaggtcaaactaggtagccagagaaaaccaacaggttcctcgttccaggggaatttgcaatgttggctcaaac
ccacctttatttcatccccactgttgcctcgccctactgtgatcctggagtttgtgcacttggtttttttaagtcaaaatataattttacacacacacac
acacacacacacacacacacacacatacatactagttacatatcatcttgttagagttgtcccatctctcctgcctgtttgatcttttggggtcctggtt
ttactttccaatgtagagactaaacttcaggcctcccaccagccagacattggtgtcttatatttgatatcatcatttactcatAGAAGTCTTTTTTAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAG
AAGTCTTTTTTAGGttgaatctgggaaagaaaaagacaagaaacagggcaccgggaactccatccagaaataaggaaaactctacccagtcaagatttga
caccacttggggctggtcattcttccagttgtgactctatcccccagattatcctgattgtgcctgtttcttgactttgtgctcaaggctgtcactggag
aacttgttagaagctctgaaatagtccaaatgtggtataacaactgggagccctagaacatggggcttgttccagtgaccccatgctagcgtccaatgcc
accccacggtttcctattctgaggtccctttttcatgttcctttcttgtctgctgcccgggagcaacagaaaacccatccagaactttctctgtacct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1353 chr9 100782454 100782455 RIP_Alu_chr9_100_01 0 - pAlu9-97160342 NA NA SINE Alu Yd2 agaataaatgaatttatactttaaaagagaaaggaaaggaaaaataaattttccatcttttcttcatttatgcaagctttgattggatttcaaaggcctc
cacttaaaaaaatcattgactccctgggtttaagggattattgtctgtggaatttttaattactttttgaagcaaaaagataattggattgaggatttga
ccaataaaagagaaactgatttgatttttaatttttgggattttaattaaaatctatagtccctatctagttagtatctgatacattttggctcaaaggg
tcactcttcctcccatgtataaagtcagtcacatgagcacatatacctctttagacttttctatactatatagtaaatatgtccattaAATGAAGAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGGTGAAACCCCGTCTCTACT
AAAAATACAAAAAATTACCCGGGCCCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC
TTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAATGAAGAAATAaatacatgacagcttaaggtttggaagctgtgagtggcagtgtttaaatgtctggactctcaagtcaaatgtcataattcac
atgccatgctcatttcaatcactctttgtcactgtcaaatagattttactgtgcagggccctaaactatatgggcactacagggacaaaaagataccagt
ctacataaaaccacactgttgtctttccaagtgtacctgtatctatccttctatagcctgcctaattctttatttaaattttaccattatttatatttat
gtaaatattatttatattcctgttttaagcctcttcagatacttaacaaacacacaccaaaccaaccaacctacaaggtatttatgtttctcaagatttt
aaagac Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1357 chr9 101289551 101289552 RIP_Alu_chr9_101_01 0 + pAlu9-97667445 NA NA SINE Alu Yb9 attactttactaaacgtataaatccaatttataccacaagttttggtaactctggttttgccatttcttcacttttattatatttactggaaacttaaaa
gtatggaagtagcctgtgtgtcccttggcctttgaaaggccctgtctttcacttatcttgattgtttatatacatatgtatcttatatatgaatcacaca
cacacttactatatatatatatatatatatatatgcacacaaatatctttattccacagcaaaggaaaataaacttggccttaagttccctaatgattta
gcaaacaatcactgcaaagaaatattaggggaggattgcttgaagaagatgcagtccatctagtttgaatgatctcagaggtatcAAGAATGAGAACCTT
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAACCCCGTCTCTAC
TAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAG
CTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
AATGAGAACCTTatatgcttgtgcctacacctttcctactggaatcattttggaggaatagcacttgtgtgcttttggtatgaaatattaggggaggatt
gcttgaagaagatgcagtccatctagtttgaatgatctcagaggtatcaagaatgagaaccttatatgcttgtgcctacacctttcctactggaatcatt
ttggaggaatagcacttgcgtgcttttggtatgacaccatctgatttgtctgaaggtcatgatcagaaaaaagtctgttcaacttacccttgggctgttg
tccagtaatctcttcataggctatgctctttatgaagtgctcagagatccccgtctgattagaaaattaagaatagttgtgctattcttaacactgt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1382 chr9 104480543 104480843 RIP_Alu_chr9_104_01 0 + Ya5NBC61 TGAAATAATCCAGTTGGGGAAG GTATATCTCTACCGAGACTCAGTTTTTAGC SINE Alu Ya5 aggaaacatgacaccaccaaaggaaaacaatatttctccagtggctgaccgcaaaagaaatggaaatatataagctgcctaaaaagaaattcaaaacaat
tttcttaaggaaactcagtgagatcaagagaacacagaagacaagtcaatgaaatcaggaaaacagtttgtgatctacatgagaaattcaacaaaaatat
agatttaaaaaaaaaaagaaccaaacagaaatctagaagctgaataagtcaatgaataaaataaaaaacctaatttagagcttcaacagcagactagatg
aagctgaagaaataatttctgaacctgaagacaggtcttttgaaataatccagttggggaaggggagaaagaatgaaaaaacatgAAAAAAATCCTCCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATCCTCCTTatgggactatggagcgccattaagcaaacaaatactgcattatgagaagaaattgagaaaggcacagaaaggttatttaacaaaat
aattgctaaaaactgagtctcggtagagatatacacattcagatctgtaatacatgtatgcaattcaataaatgtgatgcctcatatgaacagaatgaag
gacaaaaaactgtgattatgttaattgatgccaaaaatcatttgataaaattttacattccttaataacaaaatctctcaaaagagtcatatacaacaga
tgcacagctagtattatgtcgaatgaggacaactgaaagctttccctgtaaggtctgaaacaagataaagatgcccactttcaccaatttcatttaaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.PMID: 15313610.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate sequencing|Candidate screening NA 55 493 180 NA intergenic
1420 chr9 109509767 109510070 RIP_Alu_chr9_109_01 0 - pAlu9-105887562 NA NA SINE Alu Ya5 agagacagacagactctatgtgccccagacaatggattttccttttatgtatcctgcactctgctttgcctttgcccagacacacaatctatacataatt
aatctcccaatacatatgattaagcttcagctgtgctctgactaaaagtctgagttatgctttgacaggcttctaacagagagcatgatattttccagtg
ggataaaacaagaatgtgttttgttcctttctctttgggatgagctaattgtaagccctcctgctagaaagaaacagcaaattaagttttcctctatatg
caaatgacagttttataaacagattagtagtgagtttccatcttttctctctagttgttggcagagggatatgtagctcaattactttAAAACCAAAGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAACCAAAGCCatcattttcaaaggtattcccaataattccatgcatattacctcatttgtttatattttacaactaacctatcctgagctatagg
cttctggttatatttaccttattgttgttgttgctatttgtgtgagacagggtctcactccaatgcccaggctggagtgcagtggcaacatcttggctca
ctgcaacctctgcctcccagtgtcaagtgattctctcacctcagcctcctgagtaactgggattacaggtgtgtgccaccatgcccagcttatttttgta
ttttttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatacacctgccttgacctcccaaagtgctggga
tta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1447 chr9 113016651 113016933 RIP_Alu_chr9_113_01 0 + pAlu9-109390659 NA NA SINE Alu Ya5a2 ttcccattacctgctctgcagctgcttggtctgtggacactcgagtctttttcaagagctgtcgaagtttgtccaattcctcctggtatgacttgcgaat
ttcatctatctcctcctcggcctgagaacgctcttgagctgacttctttttcctttctgagaggttcttaggaacaagagaaccatcatcagctctagct
tgttaacagagaataaagagggatgatggcggtggcagttaattaccttgtggaatccttactccatttctgaaaactccattttttagttgaattttcc
cctaaatatttaacattcttggctactgggtgaggaaaatggtgacaggagaaggaaaacaagaagagctgtatctacccctctattAAGAGCTAGGGAA
ATTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAG
CCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC
CCGCCACTGCACTCCATCCTGGGCGACAGAGCGAGACTCCGCCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGCTAGGGAAcatcc
taactttaataaaggtacaggaaatcagacattctcataccctgatagtaagaaaacgaatggatatactctctttggatagtaatcctgtgaaaagcct
ttaaaaacatacgtatccagaaattccacaaattgtaattaaggattcaataagtcatagtcataaagagtgtgttacaaggatggtcactgtagtagta
tctatagtaatgacaaactgaaaacagccaagaggttagaaggaattggttaaaaataaataaataaaatggaaaaaatcctggaaaaaaatgcaattgc
agaccaagatttaccctcttaaaaggcactgggccaaaacagctttacctaatgagatttactgaagcctcaggagcagttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1463 chr9 115189210 115189541 RIP_Alu_chr9_115_01 0 - 238848 NA NA SINE Alu Yi6 aggatgtatggaaatgcctggatgtccaggcagaagtttgctgcagaagcagggagctcatggagaacctctgctagggcagtgcggaagggaagtgtgg
ggttggagcccccacacagagtccctactggggcaccacctagtggagccttgaggagaaggtcaccatcctccagaccccagaatggcagatccactga
cagcttgcaccgtttgcctggaaaagccacagacactcaacaccagcccatgaaagcagctgggagggaggctgtaccctgaaaagccacaggggcagag
ctgcccaagaccatgggagcctacctgttgcatcagtgtgacctggatgtgagacatggagctaaaagagatcatttgggagctttAAGATTTGATTGCC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTGATTGCCctgctggttttcaaacttgcatggggccagtagcctctttgttttggccaatttt
ccccatttggaatggctgtatttacccaatgcctgtacccccattgcatctaggaagtaactaacttgcttttgattttacgggctcataggccaaagag
acttgccttgtcgtagataagactttggactgtggacttttgagttaatgctgaaatgagttaagactttgagggactgttgggaaggcataattggttt
tgaaatctgaagacatgatatttgggaggtgtcaggggagaatgatatggtttggctgtatgtccccacccaaatctcatcttgtagctcacataattct
catgtgttgtgggagggacccagtgaaagat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
1474 chr9 116556631 116556951 RIP_Alu_chr9_116_01 0 + Ya5NBC239 CAGCTGAGAACTGTCACAAATAGAA ATCAATGACTGACTTGTGCTGAGT SINE Alu Ya5 actaacagtaataataatcattattggcttaattatgtctcatgataataatgaatgatgatcataatagcatttcctcagcatttgttatatgccaggt
gcagcagtaatcactttacaaacatcaattcatttaaatctcataacaatactgcaagataagcataattatacccatgttaaagataagagaattgagt
cccaggaacctaaaagacctgacctaagtcacacatctagagaatggaacagatgacacatagcttcttatgtatgttgccatttgttgaaacttacacc
tgtcgggaggagaatgcatcaatgactgacttgtgctgagttcctgctatgagccacgtaatcacatgatctcacatcatctgcatAAGAATCATGTGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATCATGTGAGatctaaatgtttttccagctattcccctggtatctcccaaagtggccagttgttttcacttaattt
aaggcattggagattcagtcttttctatttgtgacagttctcagctgtggacagaggcaatggaagtgtctctaactacttgggagactgaggcccagtg
acattcaaaggtctaacaaagaagccaatagcattccctaggagcactgaggggatgcaggtactatattgctcctaactggtccaagagacttcgccat
tcctaaaggtgccaggccttcctacaaatctagctttgcattgttgtctccttgcgtggagtctccttcctccccaccttcccagttggcaaatgcctac
tcacccttaggttcctgttt UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.PMID: 11179020.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.PMID: 11042148.
- Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.PMID:16139099.
Candidate sequencing|Candidate screening|Selective database search followed by genotyping NA 55 531 198 NA intron
1496 chr9 119436645 119436821 RIP_Alu_chr9_119_02 0 - Yc1RG348 CCACATGAAATACTATAGTGGAGT AGCTGGCTGTTGCTGTCACTA SINE Alu Yc1 ttctccataaaataaatgcgttgcagaagaactctgtaaacagcacatatcacgaagccatgaattcagatgcaacatgaggcgcaatttcctcccctct
ccgtaactgctttattctagtatttcttaaatatttcaacaatatgatcccacgttttatgccattaaatgtttagattccacatgaaatactatagtgg
agtattactaacagtaataataatagtaacaataaaaacagcaatgaaactgataataataaagattataggccaggcatggtggctcacgcctgtaatc
ccagcattttgggaggccaaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactAAAAATACAAAA
AATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGCTTGCAGTGAGCC
GAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAttatctgggctc
agtggtgcacacctgtaagcctagctactcaggaggctgaggcaggagaattgcttgaacccaggaagcggaggttgcagtgagccaagatcatgccact
gcactccagcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaatagtgacagcaacagccagctttaaagtgtgcttgttacataccta
ctgatcattgtattaagaaatggctatatgattatctcacttaatcatcataggggccctgtgcaatagaccatttttatgtgcatactacaaacaaaac
tcagagaggtcaagtaatttgcccatggtcaaacagctaagaagtagtaaagctaaaattcatatccaagcttttc UCSC - Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.PMID:16093706.
Candidate screening NA 0 0 0 NA intergenic
1497 chr9 119611399 119611706 RIP_Alu_chr9_119_01 0 + 20034 NA NA SINE Alu Ya5 actactcatttctctcataattcactgatggttgaagatctgggctccatacaatcattctagtacttaagccccttctatttaatgacactaccatatt
ccactgtcttaaagtccccttctgcatcatccgcaaccagacaatagacaagggaacaaatttaatgaagctttgcaaagaatgtttaagggtcctggta
tgtatagcaaatactacttgcacttacattcccttagctaaaattaaatctcatgaccccacttaaatgcagaggagactgggaaatgtagtctctggaa
taaaatggaatggagtgcagtgaaccatcatattttttctgtcacagtagatatttgctgtctgcaagagagtagtaaagggaagggatAAGAAAATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAGAAAATTGCaaggaaaaggacaaacttgagcaaaagcataattgtctcaaaatactagtcaaatttggggaagcacaaacaatttgatctg
acagatgctcaggttggcagtctcagtaataatttgaggctcacatcatccagggacttggaaaatgcactaaggagtttggagtttggactttattgta
cagctaaaggggagctgttgaacgatttttaaccagtagaaaatatgattatatttggaatttagaaaaatcattctctgagccatgtagatggtggttg
aagaaagcaagacaagaggcaaagagaacaggtagggtagaattgaatcatagatgtaagatgtcagactaaggatggttgcaatgtggtcagaaataag
aagatag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
603 chrX 2490297 2490298 RIP_Alu_chrX_002_03 0 - pAluX-2026967 NA NA SINE Alu Sx acacatctgtaatcccagctactcaggaagctgaggcagaaaaatcgcttgaaccctggaggtgggggttgcagtgagccgagatcgcgccactgcaccc
agcctgggcgacggagtgagacgccatctcaaaaaagaaaaaaaagaacaggctgcctcagaagtggtcagaggtgtttgtttgccttgttgtgtgcact
tccccaagggaagtgtagcggggaggagagacgaatacgcacgtgtttgggtcataggactttacactggataagagtattgacataccttccaaattta
tatcactgaaaaaaaaaagaTTCTTTAGCAGAAGTAAACATTTTGGAATTCAAGATAAGTGACATGGGGGAAAAAGAATTGGGTTGAAAATCTCACTCTA
GGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCACTTTGGGAGGCCGATGCGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCCGGCCACCAT
GGCGAAACCCCGTCTCTACTAAAAATACAAAATTTGCTGGACATGGTGACACATGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATTACTT
GAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGTGACAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAGAA
AAGAAAACAAGGTTCTTTAGCAGAAGTAAACATTTTGGAATTCAAGATAAGTGACgttttcaaagctgttctcagttaatgttgttttcaaagcctgagg
ttgtggcttaggttattgagacgcttcttaaccattcttctcctccttcaccctaaaattaagatccttttatatctcctcttctcaggctgtgttccac
agatgttcatattggaacttgcctgcattgcagatgtctgtaaaaaaaaagcggggggagcggagaggcaggctgaaaggtagtagagaattccaaggtg
ccgacagagaaggaaagaccagcctgggtcttacatattagctctgtgatactccaagctccacagtgttaagct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
605 chrX 2725352 2725353 RIP_Alu_chrX_002_01 0 - pAluX-2262053 NA NA SINE Alu Yc1 aaaaaaaagtctattaaacaaagtaaaagaaaaccaagatccaactctatgttgttacaagagacgcttgctatatatttagagcaagaatatttagcag
aaggaagattagaacagaaaaaaatacagcagaaatgaagttgcacatcttaaatatatacaatgtttgtttattatgctttaaaaaaatctagaagaat
gaaaaatctatttaaaaaaaaagaaaaccaagatccaactatgtgctgtctatatgacatttgccttactttcagcagaaggaaatagattagaaaaaat
aaattatgcaaaaatgaagctgtgcatcttaaatatatacaatgtttatttgtcaattataccttaataaagctggaaaaattaaaaatAGAAAATATTT
GGGCCAGGCGCGGTGGCTCACACCTGTAGTCCCAACACTTTGGGAGGCCAAGGCAGGCAGATCACAAGGTCAGGGGATCGAGACCATCCTGGCTAACACA
GTGAAATGCTGTCTCTACTAAAAATACAAAAAATCAGCCAGGCATGGTAGTGGGTGTCTGTAGTCCCAGCTACACAGGAGGCTGAGGTAGGAGAATGGCG
TAAACCCGGGAGGCAGAGCTGGCAGTGAGCCGAGATCCAGCCACTGCACTCTAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAGA
AAGAAAGAAAATATTTaaaaattgttaaaatcatatctggaaataaatattagttttcaaaacattgtttttttacattttgccatttgttaaggatttt
gatgatcttaaatgaattgagtaactttctttttggttaaaactaatatttgtaggaaattcttttttagaatatggccttgttggtctttataacttct
gaagtgatgttgtcatttgctccactttataaaataaaagcaaagtatgattcttaaaagtccacatcaagtgacagacatctgcttctatctgtgcagc
tctgttactacaactctttctctacaaagtgtgcaagcttcagtgtatggcctcagcatgtacacagttccacaggttgtgcactgcatcacatcaccgt
ggata Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
607 chrX 2980298 2980310 RIP_Alu_chrX_002_02 0 + pAluX-2517000 NA NA SINE Alu Y gcaacctccaactcccgggctaaagcgatcctccagactcagtttccagagtagctgggaccccaggtgcttatcaccagcctagctaattttgtatttt
tattttttgtagagataggttctcattatgttgcccaggctggtcttgaactcctgggctcaaggaatcctcctgcctctgcctcccaaagtgctgggat
tacaggtgtgagccaccattgtgcccagccatatatatgattttaaaatatggtaaaaatggggtgacaaaaaaattcaactaactttgcatagatgaaa
agcatttctataactttggggatttggcccacagtcctgagcatgtagcttttgcctgcaaaacattcttaatcttcaaggagatgtttGAAAAATTGTA
GGCCGGGTGCGGTGGCTCATGCCTATAATCTCTGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCATGGTGGTGGGTACCTGTAGTCCCAGCTACTTGGGAGGCCGAGGCAAGAGAATGGC
ATGAACCTGGGAGGCAGAGCTGGCAGTGAACCAAGATCGCATGACTGTGCTCCAGTCTGGCTGACAGAGCGAGACTCCATCTCAAAAAAAAGAAAAATTG
TAatcatctgtggctatcattgtctcagagtatttacaaaggactctgagagacaatagggatgaactcctgtttgtgtttttcctctcagaggagatat
ttgaagtgagttttgaaataagtatagagacgagatagggattgaatcaataatcccatgtccaatattcattacctgataactgagtagggatatgctg
agaaaagtgtcatgtgtttccttaagaaaatatgacctcagccaggactgagcaaaactatgaactggacgcagtggtcctcaaattccatgtttctttc
ttttcctcaattcagttctttcctcagcttccacttttcctttacttggtaattccttattatattaccttttgcttgtctttcctttctc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
621 chrX 4764459 4764758 RIP_Alu_chrX_004_01 0 - Ya5DP4 AACACCTCTGATGTAGCTTATG CTAGGCCACCATTAAGCCAA SINE Alu Yb8 cattgtacccaataggcaggttttcatccctcatccccatcccacccttcctgcttctgagtctccaatgtccattatacaattctgtaggcctctgtat
acccatagcttagttcccgcctccttttatgccttttgtataataacaatcaattgcagattctacatttgctgataattgaaataactctctttagctc
tatttacaacacctctgatgtagcttatgtttttatttggaattctacaatactgtcatcatttttaaaaactagattgaaaatggattattcactaaaa
catcatttttagtgagaaaaatgtattccataaccttaccattttctaaaaaatacacaaagtttgatgtcaatgaactcccttAAAAATGCCCCACCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATGCCCCACCAAtagtacccattattaataacctgatgtgcaacttcgatgtgctttttaaaatgcgtataaccaatggacacacacacacacacac
aaacacacaaacacatgcattcctactattttattattggcttaatggtggcctagtaacaatcaactgtagagtttcttactatgaaatgttcctgcta
tacaccttttaatgcacacatgtaattatttttataaaatttatataaagtatatcagtggtgatctatttgacaattcttaatataatacatatcacca
aattattttctatgaaatttgcctcaatttacagtctttccagcaataaatgagaagggtgagaaggaagggagggaggaaaggaaggaaataaggaag UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intergenic
626 chrX 5430086 5430416 RIP_Alu_chrX_005_01 0 + Ya5DP3 ATCTTGAGAATCTCTACCAC TCCTCTGGATTTCAGGGTTG SINE Alu Yb8 tcatgatataattctgttattgttgtttgcctcttattacccactagttttgtgatgtatttttacttaatctgcttatttataaacattttacctgtag
cactagaataaataggttctgccacattagtaaatttccagatataattttaaataggaattttagttttagaagaaaaacaaaaccaaaataatgctaa
cctgtctttttttcagaacggtgtatgtacacattttcaagaattagtaaaaagtcagtttgcctctcaaataccacaagtacacatctaaatttatctt
gagaatctctaccactatttttgtttaaatttaattaaatcataaagagcactgtttgcatgaatctttgtatgaaactgctctacAATACCACCGAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAAA
ATAAAATAAAAAATAAAAAATAAAATAAAAAATACCACCGAAGAgaaattttaaagtaagtacaaccctgaaatccagaggaaaaaatcatttggcttta
aagcaaaacacttttatttaagctgacaaaacacacacatacacacacacacacacaaaatgtcagtgataactgtgattgaagccactaatattttaga
aaaccaaattccttcatctttcaaaactattggtttcaaagagatccgcatacagagagttatacaactgcgggctttgagtttggctgtgagctcttga
aactgttcatagggtttctaaaactgtgacgatcttcctgtcttctctttttcttttatatcctgtttctaatttgtttgatggatctttttgaccaaac
cttcaaaatatatccagaggcagatactac UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intergenic
667 chrX 10856066 10856388 RIP_Alu_chrX_010_01 0 + Ya5491 ACATGAATGTGCCATTGGTT CAAGAAGGCAGCTGTCCTAGA SINE Alu Yb8 ccctgggggctgacctaaatggactttgtgaatgagccttccaatggggagtctcaggatagtatcagagaaagtgaagagattcagtttgaagtaggaa
ttcccccagtgttgtagctgcaaagtgatcttggtcaggttctgttagctgaaggtcacagcctagtcaggtagccctcttcactcagctctctttgtgt
ctgggtcctggaagctgatctcttccctccacccttctggcatgggatgccaacagtgtccactcactagcttacaggtagcgtacctacacttgaggtt
ttcacacctttgtaactagaccctttactaaagtcttttcagattactcaacatgaatgtgccattggttatacaagcagtttAAAAACTTCTAACTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAACTTCTAACTCATaccgttgtgagatggatttgtactctctaggacagctgccttcttgaggcaggtatgcaag
ctttcacggggtccctttgggccaccctgaccacaacacctgtaacgtgacatggccttttgtctcactcactgttcccagtcccctcttagcatctgtc
ccagcattgcacacaattgcctcctaatgctgaggtccccttgcctagggtgatggacattcggatatgtcatcttgatcccttttcaaggaaagccttg
ttgtgctgagagtgctgcaggcagacagctctcagctggcagcaacttggcagcagaaggctgccacggccaaggtcacatccttcccagggtggcctat
acccaatggccactggtcaaag UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intergenic
757 chrX 22615221 22615494 RIP_Alu_chrX_022_01 0 - Ya5DP13|13610 NA NA SINE Alu Ya5a2 taatgcagcacatgaatctactgagttgttttagaattgaattaacctataggtgaagtgcctgacacttggtggatgctcaaaaagtaacaatcctcct
attcctctcttggtttctatgctgaacatccttcttcatatctatgcttacttcctcatcatccttctggctgattcctttacttcctctttttgcctaa
atatgggtgtcaagtcggtactgttgttggccctctacttgagcgtgtccctctcacagttcatgtccgtttttatagcattctttctcactgtatacct
ctatagagccaagcctgatactctgccaaccccacatgtccaaatgcctagtggaagctccgtttggatgccccaccccactttAAAATCAGTATATCCC
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTG
CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATCAGTATATCCCaagctaactat
tcaccgatctccttgtcacattccccataccatcccaattatttctttgactttaatttgtcccttgttgttactactaaaaaactttgaatatgatttg
atttatcccccaccttccaatccatatccagtggtcagcctcatgctttttgatattctcatgagatggagtatattataggaataagcatagatatctt
ttgtcttaaagctctgagtccaacacttagttacatagttatattggccttaggaaaaataaatgacctctgaacatcacttttctcatctaggaaaaca
gaataatcatacctctttcacaagtttcttgttggagatgtgaatgttctttctaaacaaacaaatggttata UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 0 0 0 NA intergenic
768 chrX 24052372 24052689 RIP_Alu_chrX_024_01 0 + pAluX-23494670|13459 NA NA SINE Alu Yc1 tgtagtataaggatgcgattattactatattctgtccttacccttagagaagtaacacctcgtggcacttgactgtgggttctctggggtgagaaaccat
gtgctatttattttaatctggcacttgacacattaatgcttgttggatggacaaacaacagttaagagatgtcgaaagtagacaccatgtggctcttctg
ggcaggacctcatggaatgcccacttggagatggggacgctgatgggtccagattctgaccttgttttaaagtttcagaatatggtgatgcaactgtaga
aagctgatttctgctagctcatgagagattgttttgtattttatcacaacttcattgagatataattcatataatttactgacttAAGATGTAAAATTCA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA
AAAGAAAAAAAAAAAAAAAGATGTAAAATTCAataatttttagtatattcagacttgtacaaccaccaccacagtcaattttagaatacttttgtcctct
attaaaagaaaccggtaccttttggcagtcactccccagtctcacctcccccagcccctggcaaccactaacgtgcgacgttctgtctctctagatttgc
ccattctgggccaggcgtggtgactcacgcctgtaatcccagcactttggaaggtcgaggtgggtcgatcacctgaggtcaggagtttgagaccagcctg
gccaacatggagaaaacttgtttctactaaaaaatacaaaagttagccaagcatggtggtgcatgcctgtagtcccagctacttgggaagctgaggcagg
agaattgcttgaacctg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
817 chrX 30468854 30468855 RIP_Alu_chrX_030_01 0 - GK CCTTGATAGTGATTTCAGTAAGTTC GCTTCTTTCTAGTGAAATCTGCAAAC SINE Alu Ya5 aagcaccccttgggaagtgtgacttaagccactgggacgcattataatctcttccagcctgtcaattttgtgttattattgttccaatccaccacagagc
aagaaagacgggaaggtaaagacttgagttggcctcaattatccgggaaaaagattctataaattgtatcaaataactattgtaccataagatgcttctt
tctagtgaaatctgcaaactttttttaaaaaaagaaacattcttatagtatacttctgaagaaattcttaccttgacaaagttattatttcctggaattc
ttttactaagactctcaacggtagactgggttcttagatcaagccacactatagaccaaaataaaataatatacatgaaaaacttcatttAAAAAATAAG
GGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC
CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA
AAAGAAAAAAATAAGaacttactgaaatcactatcaaggataaaagactgattagtttctataaggaattaaaattctatagcttttaagagatagaaat
tagaaaattagaaatgaatgggcatattgttagataaaaataaatttatgagaggatttaaagcttttatgcaaaattacagaccaagttaggagaataa
tacaaaccttagagtgcttattttgtattatttttatagaacaaaactacaaaaaatatttggaatatagattttctaagtatacatgaggccagagaat
atctaaaagctaggcaggctagttggtagcacaaaatgcaaaacccaggatcatcataccatatataaagtgtgcatcttaacaaactagggagcaattt
gtgac Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.PMID: 11700292.
- Zhang Y, Dipple KM, Vilain E, Huang BL, Finlayson G, Therrell BL, Worley K,Deininger P, McCabe ER.AluY insertion (IVS4-52ins316alu) in the glycerol kinase gene from an individual with benign glycerol kinase deficiency. Hum Mutat. 2000;15(4):316-23.PMID: 10737976.
Direct sequencing NA 0 0 0 Glycerol kinase deficiency intron
824 chrX 31337135 31337437 RIP_Alu_chrX_031_01 0 + Yg6AH38 TCAAACAGTGTGAGGGTTCG TTTCCACCTCCCTACTTCTCAA SINE Alu Yg6 ttacaggagagacaaaattaccacatcattcccattatcagaagaaataattcaaattaagaaaaattagaaataaaaatgaagagatgacactgaagaa
tatctcaccactggaagatgactttcatctacagtgatctctctataaagcaaagatacttttcagctattattcagtaagtgagtccaacagtttcctc
tgatattgtgaatttaattagtaggcaatttgctcatgaaatcagaatctagcccttcccttgctgggttgctggatctgtgtattcctatattcttctc
tagctattgcctcatttctcaaattcctttcatgtcttcatctccattccttatttccacctccctacttctcaactcaccaccatAAGACTTCTTGGCT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAGACTTCTTGGCTctggttccagtgtaaattctttgattgcatcatcatgaacctcttacttgaggttagggctcagcgccccgaaccctcacactg
tttgagggtcaactgtataacactttccctaattcccaactcaccacaataagacttcttggctctggttccactgtaaattctttgaggcatcatcatg
aacctcttacttgctgaaaactccaagaaatagtgttcacacctagctttttcagctgcctggtagtccctgacactgccagccacttccttgtctttga
gactttctccttgctcaggttcctagtcattcttctcctttgtagcctgccattttctggccacctgcttagctcctacaggaaacacttcataagtgtt
gt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 55 452 136 NA intron
836 chrX 32968250 32968560 RIP_Alu_chrX_032_01 0 - Yb8DP2|238887 NA NA SINE Alu Yb8 ttagggcattaggaatgaaaaagacaaaatgcaaacaaaagatatttagatatttaattagtaaaacttatttgcgcgggtaatgaggagagagacaaaa
atagtagagagcaaatcatcaatactgacttcctgatttcttactagggcagtataggtgtacactatatatatatatataatattatatattatatata
tatatataatattatatattatatatatatataatattatatattatatatatatataatattatatatataatattatatattatataatatataatat
tatatattatatatatatatataatattatatattatatattagtactacttccttttataaattggacagaaagcttatatgtatAGAAAGAAAGATCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAGAAAGAAAGATCAatattttttcaaatgtccagccaattgtttaagtaagttaaggtatgtaatctaaacttataatttaagtttaaag
aaaaacattagaccaaatatttagccattttgatgtagccaagtttatgcttcaggagagttgcatagttatgaattgagctcacagaaatacaaataca
cacgtcatcatagtgtgatatccagcatagatggggggcagttatcataaatcctgtcctaggctgggtttggaatgtgagacagattttataataataa
tatttcatctacataaaacagtccatttcctggactataaggatcatgataccatttgtttatcatggctacaaacagaacaggaagtagtatccttcaa
cagagaagat UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Candidate screening NA 0 0 0 NA intron
837 chrX 33062508 33062509 RIP_Alu_chrX_033_01 0 + 248 NA NA SINE Alu Yb8 tttctcaacaattagtgttttttaacaaaaggacataacagtgcatagccaaaaatttattaatttttggaacttttagtttccaaattcttcttcatta
aacacaagataaaaatacttaactttttaagacaggtgaatagaaggaaatttttgctgagcctcttctactttttatgttaaatattttattctatgct
ttttatcatggcttacacaaaccttcataatgttgctgcaatatatttactgactatcaatgctctcttcaaatttggtataggtatatttttcagcctt
tcccccttcttgtctccagttacaggcccttttatgggcctataacgttggttttctatctcaattcaaaattcaaaagaaaagactttaaAAAAATCAT
CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACC
CCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAATCATtgccctaatgcttaatttagagcgtagcacatagatattcccaatatgttctcattaaaggtattgatctttgatttttaaaagtaagtaac
aacaaaactgtgagagaggagcagctttttcctttgagaactgtggtttaaatgcagtgaggggtattaatgactacataaatgacttcctatttcagtg
aagtgtttaataaggtctttaaaacagtacttcatagcatcctgctcttcaaagcaacatctgtggctctttttggttccaataagtgataaataacaac
aggattttggttcacgtaaggacctaaaacaggagagttggttaagctattcatacatgttgctttgtaattgggctgatgtaattttattttattgtg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intron
892 chrX 40261438 40261752 RIP_Alu_chrX_040_01 0 - pAluX-39349696 NA NA SINE Alu Yd8 atcagctcttttttggctataggatgccgtaaggatgacagagtaagccaagggaagttagggctaaaatagcaccttaagtgcccagttaaaggcactt
tgggtagctgggaatggggtaggcagccggatctgtcttcagatcttggcaatgtcacttactaagtagatcgagtaggaaatttttttgcccagtaagg
gacggagagggacagccagaagtggcttcctaacacaaattgactttagcagtcagtctacatgccagtagttatcagcaggcacagggtgggcactgga
aaggagcagtgcctgggaagcagatgatctgagtcctggatcagctgccgtggtgtgacactgggccagcttgtgctccccaatctcaaaAATGAAAGGA
CGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGT
CTCTACTAAAAATACAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATGAAAGGAattggggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggaggatggcttgagct
caggagttcaagaccaccctggataacatggcaaaaccccgtctctacaaaaaaatacaaaaattagctgggtgtggtggtgcatgcctgtagtcccagc
tactcaggaggctgaggtgagaggatcactggagcctgggaagtcgaggctgcagtgagccgtgatcacaccactgcattccagcctgggtgacagagca
agaccctgtcttaaaaaattgaactgtatcaggggtccccagacttttgggtatcacgagccggtaaacccaccacacctacaccatcttccccattttt
ttccactgcagcca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
921 chrX 44061177 44061490 RIP_Alu_chrX_044_02 0 - Yc2NBC19 GCTTAAAGCACTTGGTACAGA TGGCGAAGTTAATGAGAAGT SINE Alu Yc2 cctcctagacttaagcaatcctttcacttccacttcccccgtaactgggactacaggcatgtggcaccacaccaggctaatttaatttttttttttttaa
aaaagagacagggtctcactatgttacctaggttggtctggaattcctggcaacatctggaattcctggcaacaagccgtcctcctgccttggcctccca
aagtgttggaactacaggcgtgagctactgcacctggctgcctatgtcttgtaaagcattaccctataaagctattattaaattgattacatgtcttgcc
actgatagggtttgataaaagggatttaatgatacatcccctccaaggttctcataaagcttaaagcacttggtacagaatcagcttAAGAAATGGTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAATGGTGTTattacttctcattaacttcgccatgggctgcattactagtaagtggcaaaacctcaattggaatcaagtttgta
actgcagttacagaattccttctcttcttgcccaaattctagcctcaaacagtgaggggacaggctccttatattagctgggagttggtccctcatgtca
tgtcccagactccttgattctcacaactctgcctgctcttctaactctactatcttcatcaggcacaaatcatgtgaacccatcaacatttgaaatttga
cattttaatccttaaaccaatgcacagaggactttcataattatgatttgttttattaagttgtcatattgtctttcagatatggcgcttctgggataac
aggaactaggtaa UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 0 0 0 NA intergenic
921 chrX 44061177 44061490 RIP_Alu_chrX_044_01 0 - Yc1RG99 AAAGCACTTGGTACAGAATCAGC CCATGGCGAAGTTAATGAGAAGT SINE Alu Yc1 cctcctagacttaagcaatcctttcacttccacttcccccgtaactgggactacaggcatgtggcaccacaccaggctaatttaatttttttttttttaa
aaaagagacagggtctcactatgttacctaggttggtctggaattcctggcaacatctggaattcctggcaacaagccgtcctcctgccttggcctccca
aagtgttggaactacaggcgtgagctactgcacctggctgcctatgtcttgtaaagcattaccctataaagctattattaaattgattacatgtcttgcc
actgatagggtttgataaaagggatttaatgatacatcccctccaaggttctcataaagcttaaagcacttggtacagaatcagcttAAGAAATGGTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAATGGTGTTattacttctcattaacttcgccatgggctgcattactagtaagtggcaaaacctcaattggaatcaagtttgta
actgcagttacagaattccttctcttcttgcccaaattctagcctcaaacagtgaggggacaggctccttatattagctgggagttggtccctcatgtca
tgtcccagactccttgattctcacaactctgcctgctcttctaactctactatcttcatcaggcacaaatcatgtgaacccatcaacatttgaaatttga
cattttaatccttaaaccaatgcacagaggactttcataattatgatttgttttattaagttgtcatattgtctttcagatatggcgcttctgggataac
aggaactaggtaa UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.PMID: 11560904.
Candidate screening NA 60 390 64 NA intergenic
930 chrX 45343801 45343802 RIP_Alu_chrX_045_01 0 - Yd3JX437 TGGTGTACCTTAGTCCAAAGACC TTTGCATCTCAGAACTTTTTCCT SINE Alu Yb8 ggccgggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccacggtgaaaccccgtc
tctactaaaaataaaaaaaaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcggagaggctgaggcaggagaatggcgtgaacc
cgggaggcggagcttgcagtgagccgagactgcgccactgtactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaaAAGAAATA
AACCTTCAGTCTCCTGTTAGGATGAAGTAGGATCATTCTCGACTGCTTTGAGTGGAGGAAGCACTTTGGGACCCCAATTCTTCTTAAACAGATTTTCAGT
GAAATCTCCTGTTTTTAGCCTTACTTTAACCAGCATTTCTACAGCTGCCACCAATTCCTAAGCTGTTAGGAAAAAGTTCTGAGATGCAAACTGGGTTGTT
TCTGGTTTTCCTGCTGCTGGCTTAGAATTCAGCTGAGTTGAGCCTTTTAGGTCAGTTACCATCTATCCATCTGTTTTCTGGCTTCCATAAATTTATTACT
GTTGTCTTCTCTCTCctttgttcttgtgactctatgacagatgtaaatgtgtttgttcagttggtcattgttattcagaacagtgctctccttttaactt
aaattcatgataata Other - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
- Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.PMID: 15008405.
Candidate screening NA 60 547 240 NA intergenic
949 chrX 47806602 47806892 RIP_Alu_chrX_047_01 0 - pAluX-46876575 NA NA SINE Alu Sc aggaaggaccatctggtctctgatctgttactggggccacttgcatggcttaggaatcgctttgactgttggcccctccctactgtgagctccttgaggg
ccttgtctgcacctggggcatccgggaagtcccagtcccagcccaggggatccctcggaggcccctgaattagtgaccctacaagtgcagattcaactct
ggtttagagggtaaagggatctgggagttgggttgccagtgtggagaccgaattcaaagaaggatcatgaaaggtattaattgttattattactacattt
aaacagtgtttacaagctcagagaggccttcccttagcctattttacatgtattgttcactatttcataagtgaggaagctgaataaaAAGTAGCCTAAG
GACTGGGCGTGGTGGCTCACGACTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCATGAGGTCAAGCGATCGAGATCATCCTGCCCACCATGG
TGAAACCTCGTCTCTACTAAAAATACAAAACTTAGCGGGGCGTGGTAGTGCCTGCCTGTAGTCCCAGATACTCTGGAGGCTAAGGAAGGAGAATCGCTTA
AACATGGGAGTTGGATGTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGCAAAAGAACGAGACTCCATCCAAAAAAAAAAAAAAGTAGCTTA
AGagtgttggtcagtgatacatcccaatgcaaccagaattgttatgggtaccacctcactgaattccacattcaatgttggtgcctcggtaggctggtat
gccagatctggtactgctttctttgctgcctggattaatttcagcaaaccatttctttccctctcccttccctgtatacatctccccacaccatcttgtt
cagcagtgttttgtcccctctgtatgtctttacatttactctcccagcagctgtctacgagcttatatgggatcccttgtattttacggaaactcttccc
tttgtagaccttgtgaattcttagaatgctatgctccaaatcttctgtataccaaactctcaattacatggagatatttgctgtttgcaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
963 chrX 49558377 49558378 RIP_Alu_chrX_049_01 0 + CLCN5 TCCATCTTCAATTTGTTTTTTCCTTC CGTTTTAGCCGGAATGGTCT SINE Alu Ya5 ctttcttgaagccaaagaagagtttgctcataagaccctggcaatggatgtgatgaaaccccggagaaatgatcctttgttgactgtccttactcaggac
agtatgactgtggaagatgtagagaccataatcagtgaaaccacttacagtggcttcccagtggtggtatcccgggagtcccaaagacttgtgggctttg
tcctccgaagagatctcattatttcaattggtaaggatttcagaaaggggatagtggaatccactgtggaactcaataaatatgcctgaaatgggggaag
acagggaaggggggactggttaggagccagaaggatagagctagcacgtccatcttcaatttgttttttccttctgtttgaataGAAAATGCTCGAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATtCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTaGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAAATGCTCGAAAGAtagcacttccatcatttatttcacggagcattctcctccattgccaccatacactccacccactctaaagcttcggaacatcctc
gatctcagccccttcactgtgactgaccttacacccatggagatcgtagtggatattttccgaaagctgggactgcggcagtgcctggttacacacaacg
ggtaagaagtcttgagtgaagtcaaattgaattgtgggagaaagagaatgcagagatagaaagaagtagaaagaagtagaacccagtttaaatgaacatt
agtagcacttttaggacttcttgaagctctgagatgaaagtggataggtttttttaaatcataattaatgtaaagggagtttgggaaagaacatgtgtt Other - Claverie-Martin F, Gonzalez-Acosta H, Flores C, Anton-Gamero M, Garcia-Nieto V. De novo insertion of an Alu sequence in the coding region of the CLCN5 gene results in Dent's disease. Hum Genet. 2003 Nov;113(6):480-5. Epub 2003 Aug 29. PMID: 14569459.
Mutation screening estimated sizes for PCR products, polyA length unknown 60 650 300 Dent's disease, low-molecular-weight proteinuria, hypercalciuria, nephrocalcinosis, nephrolithiasis exon
1008 chrX 55563256 55563569 RIP_Alu_chrX_055_01 0 - pAluX-54285500 NA NA SINE Alu Sc aaagccatattgaatcataaatatgagagcatattcttacttctgattatacccaacaactaacaattttcagattattttctcatttctgcttttaaca
aatacataatgcatttctaataccagtttgtgtgaaatatcctgagcaccctaagcagattctagtaccagctctgacattattcgtgagattctggatg
aattccataaattctacacccatcttttgctgttattgaaaatagtaaatgcaaatcagatatttaaaatctgtttcaaagttgatttctgtatcctcat
gttctgttggatagaatacaaagatatgacttgtttttcataacaatcagtttcactccagttataatatctgagttgaaatttcatggttcctAAGAAA
ATGAGTGGGCAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGAGGGCAGATCAGAAGGTCAAGAGATCGAGACCATCCT
GGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGG
AGTATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAAATCGCACTATTGCACTACAGTCTGGCGACAGAGCAAGACTCTGTCAAAAAAAAAAAA
AAAAAAAAAAGGAAAGAAAgagaaaacgagtgggcaacttgcttgatgaaagtatcttttccacacatttttcaacttggcgactgttaatcagaagagc
ttctgaatttataggaagtattccatgtttatggaagaaattacctaaatgattttactctacactgctgaaccattccattagactatttacattgaaa
gatagttttcagttatttccaggagcccgttgaacaagcctcaatttcattcttaggaagcttatagtcttaaacgattatcttgttaaaatagttagca
aattacatgagaaaggaaaataataaaaaatgaaaataataaagagcaatagaataaatctaagggaaaagaggtacttactaaaagacagctatgaatc
attagtaaaagga UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1083 chrX 65310083 65310376 RIP_Alu_chrX_065_01 0 - Yi6AH124 TGTCATTTGTTTGTGTCCTCTCTTA ATAATAAACAGAGAGCCAAATCGTG SINE Alu Yi6 cctttgaagaccagcgcaagacaaggatgccctctctcaccaatcctattcaacatagtattggaagttctggccagagcaatcaggtgagagaaagaaa
tacagggtattcaaataggaagagagggagtcaaattgtctctgtttgcagatgacatgattatatatttagaaaacccggtcatctcagcccaaaatcc
cctcaagctgataaggaacttcagcgaagtctcaggatacaaaatcaaagtgcaaaaatcacaagcattcttatggaccaataataaacagagagccaaa
tcgtgagtcaacttgcattcacagttgctgcaaggagaataaaatacctaggaatacaacttacaagggatgtgaaggacctctttAAGAACTACAAACC
TGGGCCGGGCACAGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAAGTCAGGAGATCAAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTGCCAGCTACTCCAGCTGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTTCGTCTCAAAAAAAAGAACT
ACAAACCactgctcaagcaaataagagaggacacaaacaaatgacaaaacatttcatgctcatggataggaagaatcagtgtcgtgaaaactgccatact
ccccatactccccaaactaatttatagattcaatgttatccccatcaagctacaattgactttcttcacagaattagaaaaaaaactactttaaatttca
tatggaaccaaaaaagagtacatatagcctagacaatcctgagcaaaaagaacaaagctggaggcatgaccctacctgaattcaaactatactacaaggc
tatggtaaccaaaacagcattattctggtaccaaaacagatatatagaccaatggaacagaacagaggcctcagaaataacaccacacatcca UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 55 466 159 NA intergenic
1125 chrX 70906252 70906558 RIP_Alu_chrX_070_01 0 - pAluX-69356353|238289 NA NA SINE Alu Ya4 tggcacgtaggaggcactcaataaatgttagctcctattattagtagtatagatagtagtttcctatttttaaaaaaggaagggactttttttctccctt
ctccatcctgggtcaacatagcctcaagtccttacttcagagtttctgaagaatttattaaaatcaggaatagtctagatcttgtctcttgccaaattag
cttttaatttgtcataggctttctgacattcaggttgtctcaacttatttatcaaacctttctcagccaaattagtaagatttattaggttaaactgcat
tacaaacttgtggcaataacaagtgctggtccttatttgcttctttatgtctgggttgtcccacttcccaatcatcttagctatatcttAAATAAGTAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATAAGTAGGattctattggttactctctagcccagagtcatcaccttggacagtctaaatggatgttcactcaactccttagtaagcccagt
ttctggagttacccagggaacagtcactaaatatcttagatgagtttacatatttacattaaaaatgactatctcagggaggagccaagatagctgaata
ggaacagctctggtctacagctcccagcatgagcgacgcagaagatgggtgatttctgcatttccaactgaggtaccgggttcatctcactggggtgtgc
cagacagtgggtgcaggacagtgggtgcagcacacaatgcacaagccaaagcagtgcgaggcattgcctcacccgggaagtgcaaggggtcagggaattc
cctttc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison|Genome comparison NA 0 0 0 NA intergenic
1163 chrX 75873286 75873576 RIP_Alu_chrX_075_01 0 + Yb8NBC133 GCCATTGATCCCACAGAAAT GCTGTGAATTCGTTGGTCCT SINE Alu Yb8 agaattagaaaaacaaattcaaaagctagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacagcaaagacccttcaaaaaa
tcaatcaatccaggagctgcttttttgacaaaaaaaaataataacaaaatagacagattactgctagaataataaagaagaaaagagagaagaataaata
cacacaataaaaatgataaaagggatattgccattgatcccacagaaatacaaactaccatcagagaataccataaacacctctatgaaaataaactagg
aaatctaaaataaatggataaattcctggacacataacccttgtaagaaataaccagaaagaagtcaaattcctgaatagaccaatAAAAAGTTCTGAAA
ATTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCT
GAAAttgagacagtaattattagcctaccaaccaaaaaaagcccaggaccaacgaattcacagctgaattctaccagaggtataaagacgaaatgatgcc
attccttttcaaactattccaaacaacagaaaaagagagactcttccctaactcattttatgaggccagcatcttcctgataccaaaacctggcaatgac
acaacaaagaaaaaaatttcaggccaatatccctaatgaacattgatgcaaaaatcctcaataaaatactggcaaaccaaatccagcagcacaacaaaaa
gcttattcaccacgatcaagtcggtttcatccctgggatgcaaggctggttcaacatatgcacatcaataaatgtaatccataacataaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intron
1186 chrX 78878361 78878655 RIP_Alu_chrX_078_01 0 - pAluX-77113362 NA NA SINE Alu Ya5 gcactaaatatggaaaggaaggaccactaccagataatacaaaaatacactgcaacccacagatcagttttactatagagcaaccacacaagcaagccaa
cgtaataacctgctaaaagcacaatgaaaggatcaaatccacacatatcaatactaacattgaatgtaaatgggctaaacaccccaattaaaagacacag
atagacaaactggatttaaaaagtaagacccaatggtatgctgtcttcaagagacccatctcacaaataatgacacccacaggctcaaaataaagggatg
caggaaaatctactaagcaaatagaaaacagaaaataaggagggttgcagtcccaaattcagacaaaaccgacttcaaaccaacaaagataaaaaaaaaA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAaaaac
gaaagaagggtgttacataatggtaaaggtctcaattcaacaagacttaactattctaaatatgtatgcacccaacacaagagcaccaagatttataaac
caagtttttagatctctacaaagagacatagactccccaataatagtgggagatttcaacactccactgacagtattagacagatcatcaaggcagaaaa
ttaacaaagatattcaggacctaaactcaacattgaaccaaatggatctgatagatctttacagaactctctacccaaaaaacaacagaatatacattct
tctcattgctccatgacacatactcaaaaattgaccacataattgaacataaaacaatctaaaagaacacaaatcataccaaacacactctcag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1236 chrX 85347267 85347556 RIP_Alu_chrX_085_01 0 - Yb8NBC30 TTGCCTTGGATGGCATATCT AAATGGCCGGAGTAAGTCCT SINE Alu Yb8 tagaaacaactaaaagtttaaaagttggagaatgaagctaaggcataaagttattgttgtttcctttttgcttgtttgtttgtttgcaagtttacgcaaa
cagtgtaagttgtcatgagcttaaaacaatggtttataaaataaaatttgcaattcccatgttaaccttaaagcaaaaaaatacaaggggtccaaaatat
atatataaagcaagaaactaaacagtatcaccagaggaaaccaccttctctaaaaggaacacaggaagggaaaaaatgaaggaggagaataccacaaact
accaaaaatcaaacaacaaaatggccggagtaagtccttacttaacaataataacaatgaatgtaaatagactaaactctccaatcAAAACAGACTGGCT
CCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCTAGACCAACCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA
AAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC
TTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGATCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACAGACTG
GCTgaatggatggaagaacaagaaccattgatttgttgcctacaagaaacacacttcacctataaagacacatatagactgaaaataaaggaaaaagata
tgccatccaaggcaaacaaaaaagagcatgagtacctacatttatatcagaaaaactagatttcaagaaaaaaaactatgagacaaagaaggtcattatg
taatgataaaggagtcaattcagcaagaaaatacaatttaaatatatatacacccaacactggagcaccgaaatgtataaagaaaatattattaaagcta
aagagaggtgagaccccaatacagtaataattggagacttcaataccccactttcagcattggacagatctttcagacagaatatcaac UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intron
1258 chrX 88286876 88287176 RIP_Alu_chrX_088_01 0 - pAluX-86516355 NA NA SINE Alu Ya5 ctctctttaatcctataaaaggcgaggaagctgcagaagaaaaagtttgaagctagcagagtttgattcttgagatttaaggaaagaagccgtctccgta
aggcaaaacaggaagggctgatgtgaaagctgcagcatattatccagaggatctagctaaaataattgatgaaggtggtgacactaaacaacagattttc
agtacagacaaaatagggttatattgatagaagatgctataaaggactttcatcgctagggaggagaagtcagtgtctggcttcaaatcttcaaaaggca
ggctgaatctcttgttatggcctaatgcagctagtgactttaagttgaagctgaatctaatttgccattctggaaatccttgggtctttAAGAATTATGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAATTATGCtaaatctactaagcctgtgctctatacatggaacaatgaagcctgggtgaaagcccacctatttacagaatcgtgtattaaatatttta
aacccaattttatgatctatggctcagaaataagatttctttcaaaatattactacttattaactatgcacctggtcacccaagttctatgatggacgtg
tccatggagattaatgttgcttttatgcctgcaaacacaacatctattctttagctcatggattaaggagtaatttaagctttcaaatcttattatttaa
gagatatattttgtaaggctctagctgccatagatgttgattcctctgatggaccggggcaaagtacattgaaaaccttctgtaaagaattcacccttct
UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1265 chrX 89226659 89226660 RIP_Alu_chrX_089_01 0 - pAluX-87456226 NA NA SINE Alu Y agtttgaaattttacatttatgtctttaatccatcttgagttgattatgtgtatggtgtaaggaagtggtttagctttaatcttctacatatagctagcc
atttatcccagtaccatttactgaacagggagtctttttcccattgcttgtttttgtcagctttgtcaaagatcagatggtcatagaagggtgatcttat
tttggagctctttattctgttccattggcctatatgcctgtttttgaaccagaaccatgctgttttggttactgtagcctcgtagtatagtctgaagttg
ggtaacatgaagcctccagctttgctacttttgcttaggattgccttggctatttgggttcttttttggttccacatgaattttaaAATAGCTTTTTCCA
GGCCGGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGGCCATCCTGGCTAACACGG
TGAAACCCTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAATAGCTTTTTCCAGgttctgtgaagaatgtctttggtagtttgataggaatagcactgaatatgtaaattgcattgggcagtaaagccattttattgg
tattgattctttctatccatgagcatgagatatttttccatttgttttgtgtctcctctgatttctttgaacagtgttttgtaattctcatcgtagatac
cattcattttcctcgttagctgtatttgtaggcattttttgtgtgtgtggcaattgtgaatgggattgcctttctgatttggctctcagtttcactattg
ttggtgaatagaaatgctagtaatttttatacattgaatttgtatacagcaactttgctaaacttgtttatcagctgaaagagcttttggcccaagactg
tg Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1266 chrX 89371280 89371281 RIP_Alu_chrX_089_02 0 + pAluX-87600864 NA NA SINE Alu Y cctatcctcagagatccactaggcaatgccccaagtggggactctgtgtaggggctcccactccacatctcccctctgcactgccctagtagaggttctc
tatgagggccctttctctacagcagacttctgtctggacagtcaggtgtttccttacatcttctgaaatctaggcagacattcccaagcctcaacttgac
ttctgcacacccaaaggcccaacaccatgtggaaaccaccaacacttggggcttgcactctctgaaacaatggtacaaactgtatcttggccccttttag
ccacagctggagctggaatggctgggatgcaggataccatgtcctgaggctgcatagagcaactgggccctggccctggctcacaaAATTATTTTTTCCT
GGCCGGGCGCGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGTGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATAAAATAAA
AAAAAATAAAAAAATAAATAAATAAAATTATTTTTTCCTcctaggcctccatgcttgtgatgggacaacctatcatgaaggtctctgaaattccctggag
acattcttccccactgtcttagctattaacattccactcctgtttacttatgcaaatttctgcagctggcttgaatttctctccaccaaatttttttttt
ttttcttttttaccacatggtcaggctgcaaattttccaatcttttatgctctactttccttttcaatattagttctagtttcagacaatctgttttttc
atacatacaagcatacaccttcagaaatagccaggtcacatcttgaatgctttgctgattagaaatttcttccacacgataccttaaatcatctcactga
agttcaaaattccacagatctctag Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1272 chrX 90089378 90089379 RIP_Alu_chrX_090_03 0 - pAluX-88318951 NA NA SINE Alu Yc2 ttcttgcccttgccccaacatgtgtctggcaacatggcctccccaacatatccccatgtgtagaacatcatggcgcactgcatttgcataataaaaggct
agggcggaagggccagctttttcatgggctatgtgaatgacatgcctggtcaaaccaatcccctgagccctatgcaaatcagacaccacctcctccagcc
tactcatataagtagccacttttctgttgcacatggggtctcctctcttggctttgggaacccctccctctgtctgtacaggggagcttcttccttcttt
cttctcccttctttcttgcctattaaactctccactccttaaaatcactccacaggtgtccatgtcattttacccaattcccacgaaacAAGAGCCCTGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAGCCCTGGtgttcctccactcatcggagctgtatcaatagcaacgtaccaaagagttggatggattaaacaagataaatttatttc
tcacagttctagagggatagaagtataagatcaaggaatctacaagtttactttttactaagtcctcactccttggctgacaatggctgtcatacttgct
gtgtcnnnnnnnnnnnnnnnnnnnnccacctttgatatgcaaatgctggccattagaaactgggtctgcccaaacatggcaattcctgccgccttcttgc
ccttgccccaacatgtgtctggcaacacggcctccccaacatatccccatgtgtagaacatcatggcgcactgcatttgcataataaaaggctagggtgg
gagggccagtt Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1277 chrX 90729597 90729896 RIP_Alu_chrX_090_01 0 + pAluX-88959081 NA NA SINE Alu Ya5 gacaagaaaggttatattttgagcctaatattcaaatcagtcactcggcttttcacatatctcttgctaatgacgctgtttattttattagacaaattat
ataatgccataaaacaggggaccttctccaggtattttctcctatgggagactagctgataaagtatggtataaccataacattgtggtttcttccaaga
taaggatttccacagtgtttttcacataaagagtcctagagctaagtttcacttaataaaataagaggcaacttaaaatgatggttaaaaaaaagatact
cattacaacatgatgtagtgatgtagtggtggaaaataaatagaatgcaaagaaatgaaaaatagaaacttatatataagcttcttaAAGTGTTGGGACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGCGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGTGTTGGGACTtaggcaataccacacttgggctcagatatctgttgattgattaactgggtaatggcgtgttctcctggactttgtaaaaacattgtaa
atattgacatatatttgaaaatacattataagctatattaaattttagaatatgtaaggggcagcagtagtatctgaagtcaatatctttcactttttat
tttttttttctgaaggttcatcctatagttaatgctttggtaagtaaagaggatagggtactgggtcctgcaacttagctctgagttctcagctaaggta
agtagttagtgcttcatgcaaacagtggtatagaataacttcactccagttacttattagggaggatcgtcttaaactctgcctctcaacattataaat UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1278 chrX 90947468 90947469 RIP_Alu_chrX_090_02 0 + pAluX-89177051 NA NA SINE Alu Y gagatttaacagtatttaaatttgggccatagatgaaaatgaattctacttttgactagtaactattcttgatccatcctttgcttttgtttgagagaat
attatctctatttgagaacaacatggaaggcattgaaactagttttccacaaaggccagaggacaaaaatatttatttccttagttgattccttatcagt
tgacctggtcgcacctttaatttaattgatattattattacgtttgccttgcaagttctcagatatctccaaccttttgtgttgtcattcatcgactacg
ggaatattctcaatgaaatgtccttgatggtctctctggttcttattctagtcatgaaaaggaaaagacaaaaagatagcaaatcttaaAACTAGTCATC
GGCCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGAGGCTGTCTCAAAAAAAAAAAAAAAACAA
AAAAAAACTAGTCATCatagataaataaaaggaacttttagtgaactttgtccattaaattataagtagcttacctgatgagctacagtgtactgtatac
tttctcccctgcaagcactcaaagaaatattatttgatcaaaatctatagtgcataaattaaacaaaaaatactgaaatatattctcattttattttaat
tatgaaagtttatttttaatgatatgatatttaagctattatatttctcacttttttattttcaatgatttaaatgtaaaaattataaaacaattttaat
ctcattcattaattcatctttcatgtataagtctgttttctctgttgaccaccctgtccacattatgaatgaaaatatgtatatacttggccgggcgtgg
tggct Other - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1283 chrX 91536027 91536335 RIP_Alu_chrX_091_01 0 + pAluX-89765511 NA NA SINE Alu Ya4b ttgttatttgttttctgttcattttgtggccttctcttccttctttccttccttttttcttcttttagttaagatgattttctctggtgatacaatttag
ttttttttttaaattttttgtcagtcagttatctgttttttgatttaaggttaccatgaaacttgcaaatactatcttataacccattattttaagctaa
taataatttaacactgtataaacaaacaaacataaaaatgtagagaaaactcataaacactctacattttattaccctactttttaatcttttgttgttt
ttattgatatattgttatactgtctaggtcttgaaaagttgtagttattattttttattggttcctgttttaatatttctacttatgatAAGAATAGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAGACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAATAGTTTacacaccaaagttacagtgttataatattctgtattttttgtgtatttactattaccagtcagttttgtacctttgtatga
attcttgttgctcattaacattctattctttttaattgaggcactctctttagtatttcctgaaggacaggtctggtgttgttaaaatccttcagctttt
gttttttggctgaagtctttatttctccttcatgtttagaggatattttcaccagatatactattatagagtgaaagtattttttctccagcacttcttt
aaatatgtcatgccactctctcatgccctgtaaagtttccactgaaatgtgctgccagatgtattggtgctccattgtatgttatttgtttgttttctct
tgctgctc UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intron
1286 chrX 91946750 91947046 RIP_Alu_chrX_091_02 0 + pAluX-90176234 NA NA SINE Alu Yg6 tcggcctcccaaagtgctgggattataggcatgagccaccgcgcttggccataattgagaagtttgaaccagaaaaataaaatgatcagacttgtattag
gttggtcaccattacttttaatggcaaaaaccgcgatcacttttacaccaacctagtattttatgaagctcactctgtttgcagtgtggaaagttgattt
gcagtggacaaaaagcagatatagtaaaactaatgagaaaattacaacagtagttcaggtaggagatgatagggaatttgtcttagatgttattaattga
aatgatacaaagtgggccaaatcgtagtttctttaaatccagggagttagtaatggaatataggagaaatacaaagagatacatGAAATATCAATGTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGATATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCTCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCTGGGAGGCGGAGCTTGCAGTGAGTCGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAA
TATCAATGTTCTtggattagggaggtagctgatttatgtgtattattttataaattaaaatagaacaatacatagaacaatggtgacaagttttcatgaa
gcaaagattgtgactaatcttacactaagcaactgacacccataagaaataagaaaggaaacacaaaaaactttactaaatagaaaatgtgaatttaatt
gacaaacatgtcctaatgtaacagtagtttcaatgcatgtaaatggattatagtgattaatgaagcaaagcaaatatacagttttgaaaaaaagagaaag
aataaccagatgttcttttaaaggacacagaataatcagaaatagaggagaagaaaaagaaatactaagcagtatgaatcaaagaaagctaggagt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1297 chrX 93371131 93371439 RIP_Alu_chrX_093_01 0 - Yb8NBC634 AACAGAAAGGCATCATTTGC GGGGGCATTTATTACTGCTT SINE Alu Yb8 tacctaaaaaaggatctcatagcaccatgtacctcccctgcatagcacctatcacatatgcaattttatatgtttatatgaatccttgattaatgtccac
attttttgtagaatgcatattccataaaggcaaaagctctgttttacttaacattgtatttttttgcacctagcatttcctgatacctaatcagtatttg
aaaatatttgttgaacatataaatgaatgaagacatatagaagttttacctactcaagaccatggcagactatatgttccttaagagcaggaacgatgca
cttatctgtaaatccatggtggcttggatttttttttgagggggggggcatttattactgcttagtatataattgctgcctttAGAAAAACAATCCCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAGAAAAACAATCCCATGgcccatctaacaagaattgcaaatgatgcctttctgttaagtcttcaagtagaaaattttaaaaaagaataagga
agaaagaagagcaaattagcaacaaagaaagtaccagataattcacagactaccacagtaatgtggaaggcagaaatattacttacagacacagatttct
atatattttagtgaatagaatgtgctcaataaacatgtcaattctattatttcaacaaaacctattaagtatatcctcataagcatcacagaggttttct
taacgggtgattatttttggttcaaaagaagcagcctcaaaaatttctgtgctgtgaacattgtcaatacctcattcttagcacttaccatctctgtgca
caccagcc UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intergenic
1317 chrX 96000818 96001107 RIP_Alu_chrX_096_01 0 - Yg6AH118 CACACACACACACAGGGTATAAGA AGTACCCCATTTTTACAAGTGCAT SINE Alu Yg6 cccagttaactagattctaaaacttttaactttaatggttattttcatactcatttattttgaaggatgacactactagacataaaactgaaatattagc
acttttattttcttagatgttaagatcacatttattagtagataaatactgtaaaaagagaaataacagtaaaaccttacttaatatgcacaagataaaa
cctttaaagttctatcccagaatcttcagtgctttttctgtgatatcactatctagcaaagaaaattcattgcagggccagtgcaatctgttgggttcat
tgctaccaaagtcctgtcgctggagtaccccatttttacaagtgcatctgtctcttctggccaaatttaaaaaatgaacaccttttAAAAAATGTTACCT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAATGTTA
CCTaaagagtcaaactcttataccctgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtatatacacacacacacatatacacacacacacacatat
atatatatacatatatacatacatatatatatacatatatatatatacatacatatatatatacatatatatatacatacacacacatatgcatatattg
cttaggccccactacattgttcattttcctttaatatccgattcaaattataaatatagtactctcagaactgcctcttacctgatataataatcatttc
tgataagcaaaaaatgttgtagaatagataagaagtaattttcagcagcagtgtccttcagcatattatatagaagatggtagacttca UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.PMID: 12777511.
Candidate screening NA 60 416 113 NA intron
1386 chrX 104997317 104997604 RIP_Alu_chrX_104_01 0 + Ya5DP57 TTTTGTGAAATACGGTGCAA TTGTATGGTGTGTGTGAGGGA SINE Alu Yb8 agtgccacattactatctagccattatcaattggaatgtattcattcatagctccttttagatgggatatgtgctctacattctctacccatttatgttt
atatatttataataactgaccataaagtgtatttgattttgcagtacttgctttagtttttctgcacttcacaatgcattaacaaatttttaaaaaatac
aacaccagtattgcagcattattatgtgtattcctattctttattatattacctcaacagtgacataacagcaaattatcataaaatgttctcttatctg
gttaattatagttagaatttctgatcaaaagattcagcattttaaaagcagatactcctcaactcttaaatgcttatattttgtGAAATACGGTGCAACA
CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTA
AAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTCCTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT
TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAAGAAATACGGTGCA
ACAtctaaaatatagattgtcataaaaatattatacacatcatttacataaagagtttgaacataatgtaatatccctcacacacaccatacaaaatata
attctactgtgtctcaaatttgatgttggcaatgatgtttgtcctattgaaatttttatttaaaaggaaggcctaaaccaacagttctctgcttcactat
atttaaattcccaatttttagacaaccaaagttttagcagtttagcattatacaaaaagtccaggagaaaactttgatgtattttcaaattactacagtt
gtgtgatattttgaacagctctcagaattgtctcatatgtctctaacaaattacataaaccaattgtcaggacattagtggggacaa UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intron
1397 chrX 106467618 106467619 RIP_Alu_chrX_106_01 0 + 31023 NA NA SINE Alu Ya4 accaaaaacagctttcttgggcaacaccggccagagacactattccacctccctgctgaggtccagcttgaactttattcatttcaaaaccaaaccattc
agccagaccctcaaaccactgaagacgctcagtcagtcaaaatgggtcagaatcaagtgcaaacctctctgaagtgcttatcactctccagcatctccta
aatcttgaaatgatcctaggcctttcttaagcctcccttccacctgctggtcagatagaccctgtgttgtaggactcttccagccttggaaagtggtttc
cagaaaagtttgcttgaagtctctctaatacccaagaaagacatggaagccccttgaggtaagtgctgttcttcactgattgccctgcaAAAGCAGTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAGCAGTGTTa
cttcaccccttgctgcctttatccacaattcattagtttccactgatgaaaacaatcaggttggaatagatgaatacagccatgtgtatgcattagcttg
gtccacttcccagtatgtagactatcatatgataaagcttccatgaatacattgcattgcaaaaacaggaactgcatacaaattgaccttttatcatctt
aaaaggtcttccctgaggactttctaagcataaattcagtggaggaagtcacaaaggaaaaatatacatacatgtaacaaagttgaaatcaaaaatttat
gtgtattaaaaaaacagacattgctggcaggtaaataaattggtacaactttcatggagggaaatctggtatatgtattaaaagcctt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison NA 0 0 0 NA intergenic
1397 chrX 106550733 106550908 RIP_Alu_chrX_106_02 0 - Yb8NBC102 GCCTGCAGAATGGAAGAAAC CCAACTGAGTCCCCAGAAAA SINE Alu Yb8 tcctcaaaatcaccagaggatatgaggcaggagtgattcctgatccctgtggaatgagtgaggaaactgaggcttggagaggtgagaaggcttttttgca
tggatagctactgtgtgatgtccaagctggcctagaagcacagctcattcccatggcaccccacacgcttatgtcattcatcttctgcactgcccctttg
aggccccaactgagtccccagaaaagtgtacatacgcacacagacacatatatattttgcttactattgtgtaagcagtcataaaacctctgagggtcag
gcccctatgtcagtattttttacaagctgtccaggtgattctaaggtgcagccaggggtgagcaccactgcctgaaaagaagatatAAAAATAGGAGACA
GGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA
TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATAGGAGACAagagaattggc
tttagtggccaagagctttctttaaaaacctttggcctccccaataggaactgaaggtagagtggatgtgaactatggccctagcttccatgcctcagtt
tcttccattctgcaggcctttgcaatccttcccccatgctgtggactagcttaataaattagacatcactgaggttgctgtgggaaggggtataaagaaa
gaaacacatctctctccccatatgcacatgcttgccaattgctgtgtaagtgtatctttaatattttctgcctgcaagggtggagctaaattgccctgat
taaggaagccatggggtctaactagaggtgaaggatagatatttgctgtcaatcaactagaaagaggtgctcctc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
1458 chrX 114493485 114493767 RIP_Alu_chrX_114_01 0 + Ya5DP62|Yb8NBC102|Ya5NBC98 TATAGCTAGTAAATGGTAGAGCCAGGA CTGTCTAAGATAGTGATTGGACCTACTATG SINE Alu Yb8 tttctgtgatatctcaagcccaagtcctgctagttatcttctagatgaggcccaccgctagtcttgtctgtattgagtataaattagctgttaactatat
aaaatccaaattcagtaatgccagtggtatccagttactaacatctctcacctcccttttaaaagcattgttgttacacccaataatagtaataataata
agaggtatcatatactgagtgcctgccatgtgctgcaagctttatagatgctacataacttaatccctcaacaactctgtggggtaaatattattatata
cattttgcaaatgaggttgctgaggctcaggaagaatgaatgcaatgcctaaggtaatatagctagtaaatggtagagccaggatttAAAACTGTGCCTG
GTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTCTCT
ACTAAAAAATACAAAAAATTATCCGGGCGTAGTGGCGAGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG
GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAACTGTGCCTGagcca
gaagcttactatatactgtgctgctggtctccctagataggttgcttcctcaaaaatgtggtggcttagacctaagccttgggaccatcttttgaaggtg
tgtctcttgaaaacttgagagttttggcctccatagtaggtccaatcactatcttagacagcagcaaggcttcattttccctgatcttttctgtggtctt
aatttaaatttccctctgttctaataagactttacttacccttcctatatctaggacaaatgttctatcttttgagaaattgatcttagctactatctga
ccaggatcagaaaagtctgtctcttctcatttgattacacagcaccctttgctctagtgcttacttcctagcaatcctgctg UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
1471 chrX 116236243 116236546 RIP_Alu_chrX_116_01 0 + 31314 GCACCACTTGTTGATTTTACCTATTC CATAGAGGGTGGAGTAAAGCAGCTG SINE Alu Y cacctggaatggatgacgagacccacttaaaattattctatacaggcaattctcttaacagtgccaaagcacagaattgtgatgccttagtaattgaaaa
attgcctggtgagagactttcaaaagtctacatctgctgaggttttcatctgtgagaaggaaaatatcttcattactaaataaacattgaagcaaaactg
agaggcaaaataatatatgggctttcaggttataagtcatcagttctgattgttcaatgcaccacttgttgattttacctattcataaaagaggtgcatt
aaaacattccctgagtactttacaacagtaattctcaaaacgtgatctctggaccaccagcagcagctaatcctgggaacttgtAGAAATGCAAATTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAAAGAAATGCAAATTCTGaaaccccacctcagactttctgaatcagaagccctgcaggtggggcccagcaagttgtgctttactaaacactccaggtga
tttttttcagctgctttactccaccctctatgaacacagggactctccaaggtgttcaccatcataactgttgaaactagcccatttctttttaaaaaat
tttttaccattaatttttgtgggtacatagtaggtgcatatatgtacagagtacatgagatactttgatacaggcatgcagtatttaataatcacatcaa
ggtaaatggggtatccattatctcaagcatttatactttgtgttacaaacaatccagttatactgttatagtttaaaatgtacaattaaattattactga
cca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID: 15514065.
Trace comparison plus genotyping NA 0 0 0 NA intergenic
1496 chrX 119425207 119425506 RIP_Alu_chrX_119_01 0 + Ya5NBC37 GCTTGAGGTTTTCATACTACTCTTATCTTT ACTGTATAAGCATTTTCCTCTTTATCTTTC SINE Alu Yb8 gcgagactctgtctcaaaaaaataaaataaaataaaaagtacattttaatgacgtgctttagaacaataaattagaaattaaattagcagaatgttctag
tgtatactagagcctgatatgcccaaaatactcattcctagatgacagaatctagtgatctgttttaggtaggaattatatatactggtttgaaataatc
ttttcttgttccttttaattgcaaaggaagtgactctccatttattagttcctacacgagagtagggtgaaaaggctaatagaggcctcatgcattcaaa
gaggcttgaggttttcatactactcttatctttggttaaaacatttgacctgtttatatctaatttcctcttaaacaatcacatgcAAAACCATATTAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAACCATATTAAGtaggatacttgaaattcctgaacattatataaattatgttaaaaatttaatatgtttgaaagataaagaggaaaatgcttatacagt
tatctttctgcctcataatccttaactcaaagaggaattagaaataaacctttgaaagatgctaattccatagtctgaattgctgcttgtgttttaggac
agaagtctaattcattatgtaggcctgattctaagaaaatttgtctttgcttctcacttgtgttatcttttaaaaatccagcaaattccatactgccctt
ttaggtataatgttaaccattacaaataattttttttttaataagaagtctcacactgtcacccaagctggaatgcagtggcatgatctcagcttactg UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
- Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intergenic
1499 chrX 119816159 119816457 RIP_Alu_chrX_119_02 0 - pAluX-117985277 NA NA SINE Alu Sg tttgaagtgaatttggcaggattcattaaacaccttccagtgtctgtcatttaccacctcaacactcagtgatgactgcatccatttcaactctgcacat
tcttttctaagtagctttaactacgttaactcagtgaaattcttatgtctcttgggaggttttcactactgcttagctatgaactatataacatttttat
gacactatctctactggcatgagccattactaggtggaaataagtgaactctgtgaccgccttgcagttcccatgctccagggtgcctccacatgggact
actatagtgttgctaataatcataaaattaaaagggcaggacttgtgtggacctaaagggtagccctggacactaaggcctcAAAGAAAAGGTGGAGCTC
GGCCGGGCACACTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTAGGTGGATCACAAGATCAGGAGATCGAGACCATCCTGGCCAACATGG
TGAAACCCTGTCTCTACTAAAAATACAAAAACTAGCCGGGCGTGGTGGCATGCACCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTGG
AACCCAGGAGGCGGGGATTGCAGTCAGCTGAGATCATGCCACTGTACTCCAGCCTGGGCAATAGAGCAAGGCTCCGTCTGAAAAAATAAAAATAAAAAAA
AGAAAAGGAAAAGCTCTGGATTCtggattctggattctgagttgtcctagagcttaagggccttgatcattcattggacaaagagcatgtcaatctgaag
ttttcagcaaatgagcttagggctcactgagagcccctcgttgacccttccggtcccgccccctgtctcctgccaaccagaatctttcccgccttatcta
agtcctctcaggccagacttggtgggaggttcctaggattcgctccctgcccttcccaccttagggtgtcctctgagacagactcttatttcctcaataa
agagaaagactcttattccctcagcggccagctcctcgcctcccctcggccgtagccacctcagtggtcaccgtcttcaccgtggtcgcctcagcccgct
cgcca UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1557 chrX 127470625 127470931 RIP_Alu_chrX_127_01 0 - Yb8DP49 GACTAGGGGTTTGTGCCAGA TCCCCCATTTCTGTTGTTGT SINE Alu Yb8 tgcaagtgaatctgaaataggaccaagcttatgtgaaggcacaatgaaaagactactatgagagttagggtcaatctcaaaatctcactctcattttcct
tgccaataagtgtgtaattccccactattagtcactaagtagagccaaggcattgaaactaagttcacagaaattgctttttaaagaaagaggatttgca
atagggcttcaaagttaaacagaattgcctgttttaatgagaaatgaggtaacgaagtttttgaaaggcagagtaatttaatgaaaatggaagtctagga
catgttagatagtcgatgtaacacacgatgttcttgactaggggtttgtgccagagaagcatggtgaaatggtaaagaacttgattgaaagttagGAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGAAAAgtagatgagagggaagagtcaaagctgtcttaaaagtgtccgatctgattaggcaaatgatattgacaacaacagaaatgggggaatag
agagaaaactaagtgaagaggatgaattgtcagtgaaatggaagaacaatgaagatgatacaatactctgttgggacatgaacatttttagaagagagtg
gacaaccatgctgagattattgtaaactgagacaagcttaaacaaaaggatgcagtatttagacggtgaagtcattaaaaacatataaacacatgtagac
atatatgtaccaggtattttcttctccattatgtccaatattatctctggatgaatggaggactcaagacatcatgatccacataggaactctttggtat
accttt UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intergenic
1571 chrX 129265345 129265663 RIP_Alu_chrX_129_01 0 - Ya5DP71 CACAACAAAGTACTGCAAAGAGT CTTTGTTTTCTGATTTTGGAAGG SINE Alu Yb8 actacaggcacccaccaccacacctggctactttttgtattttagtagagatggggtttcaccatatggcccaggctggtctcaaactcctgagctcagg
caatccacctgcctcggcctcccaatgtgctaggattacaggcgtgagccaccgtgcctggccccaagcattttggataagggatattcaacctgtaata
caatacacaacaaagtactgcaaagagttaatatccttcatacatgaagggctcatgtaaaatcaacaagaaaataaggaaaatacttgtagaagaaagt
tggcaaaggatatgaatagacaatttacaaagaaaaataatgggctgcaaatctataaacagatgttcaacctcactgatgatgaaatAAAGGCAAAGCA
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGGCAAAGCAaagtaataatgagaagccctttggcaaatattttttaaaatagtcactgttaatcaggattcagaaaaat
gggcattctaatgagtgtggaaattggtacaaccttttggagagcaatttggcaatgtttataaaacatctttaaaatgctaacatattgatccatattc
ctctttcactaaagagaccatgagggatgcatacaaaaatttatatactataatgtacattgcagtataattcataatagcaaaccattggaaataatgt
ccaacatttttttaaaaatgataaagagatatgccaaaacattaaggttttccttaagagtatgttctattttcttctttatactttattttgccaaatg
ttctataatgactatgta UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intron
1614 chrX 134883517 134883833 RIP_Alu_chrX_134_01 0 + pAluX-133102677 NA NA SINE Alu Ya5 tctttgcctggaaactaagatcagatcctcagtgggctgcgcaggggaagtcattccagagaattttatgttcaatcaacgtgtaacacctaacacgctc
ctacttgacacaggcacactctttcctaaatgcattccattccctcaactttccaaagttcccataaggagtcctactatgtgctaggaatccagcacat
gcatgataaaactccatcattcttttttcatcattttcaactggctactattaagtgcaccatatgggccctgagaatgaagcattgaaaaaggcaaatt
catggagtttacaatctagtggaagacacagataaggaaaacaataaataaacgtgccatttttctgacagcaatgagtgcattcAAGAAAATAAAACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAATAAAACAGGGggtaataggataagtagtgatagggcaggggagtgacagagtgtgagaagggctcctttaaccagga
tggcagagaagacctctctgtagggaagacgtttgcattcttttttcttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcagt
gccgtgatctccgctcactacaatctttgtctcctgggttcaagcaattctcctgcctcccaaatagctgggattacaggcacccaccaccatgtctggc
taatttttgtatttttagtagagatggggtttcactatgttggccaggctggtcttgaactcctgacctcgtgttccctctcctcagcctcgcaaagtgc
tgagactacaggtgtgag UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA promoter
1638 chrX 138110430 138110740 RIP_Alu_chrX_138_02 0 + pAluX-136329590 NA NA SINE Alu Ye5 aatggaagcagaggtttgagtgatgcaacaagaaatgtgggaggcctctagaagccagaataaccaaggaatggattctaccctagagcctccagaagga
acacagccctgtgaacaccttgattttagcccagtaagacccaatttggatgtctgacattcataattataacataataaatttctgttgttttaaacca
caaagattgtggttatttgttacagcaaaaataggaattcagtaatatatatacaacacatatgatatttaaaggtctttctaatcaaaaccaggcctcc
tttaacctacaggtagagagttttcccagagcagtgcctctccataactcttcctagggcccgtctaatcctgacactgcaggtAGAATTCTAGGTGCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATTCTAGGTGCAAGgctacccaaaggctgccattttgagatgattctgcccccaccagtttctccaggccagaagctgattgtctgt
tgttttaggtgcagctcaaaacctccagttttgccttctgtaagagcactgacccaactctgcaaaccattgctagttagtaacaatcagaaaaggatat
gtgaatgcttattcttctccatgctattttctaacctggctgtattaacagctaatcagaaattaacgctatgagtaggcactcttctgacttaagaggg
agcaagtcagcgaaatatttaagtgaccatttcattgcccgcctccattccaacagggttaatgatcatgaggcctggaacttagtcgtcatcatttccc
attgggatttt UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1640 chrX 138356073 138356074 RIP_Alu_chrX_138_05 0 + F9 NA NA SINE Alu NA aacaggctcatttactttgtgaaaacttacactaaaattgtgtgtattttttgaatatatgttatacattaataaatagggtttttaaacctgtagttca
taatttagtgaaagtagaatatccaaacatttagttttaaaccaatcaattatagtgctaccatcatttttatgcattattgagaagtttattttacctt
tctttccactcttatttcaaggctccaaaatttctctccccaacgtatattgggggcaacatgaatgcccccaatgtatatttgacccatacatgagtca
gtagttccatgtactttttagaaatgcatgttaaatgatgctgttactgtctattttgcttcttttagatgtaacatgtaacattAAGAATGGCAGATGC
NNNNNNNNNNAAGAATGGCAGATGCgagcagttttgtaaaaatagtgctgataacaaggtggtttgctcctgtactgagggatatcgacttgcagaaaac
cagaagtcctgtgaaccagcaggtcataatctgaataagattttttaaagaaaatctgtatctgaaacttcagcattttaacaaacctacataattttaa
ttcctacttgaatctgcttccttttgaaatcatagaaaatatcagtagcttgaattagaccaattaattttctagattgcatcatattttaaatataaac
tatgtaatcatctacaacctgaattctttctgtgtccaatttgtccaatttttttctctaacatttatatcacaaagcaattaatttgtgtgatttctgc
atatgtattt Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.PMID: 15983781Wulff K, Gazda H, Schroder W, Robicka-Milewska R, Herrmann FH. Identification of a novel large F9 gene mutation-an insertion of an Alu repeated DNA element in exon e of the factor 9 gene.Hum Mutat. 2000 Mar;15(3):299. PMID: 10679958.
Direct sequencing NA 0 0 0 Haemophilia B exon
1640 chrX 138356073 138356074 RIP_Alu_chrX_138_04 0 + F9 NA NA SINE Alu NA aacaggctcatttactttgtgaaaacttacactaaaattgtgtgtattttttgaatatatgttatacattaataaatagggtttttaaacctgtagttca
taatttagtgaaagtagaatatccaaacatttagttttaaaccaatcaattatagtgctaccatcatttttatgcattattgagaagtttattttacctt
tctttccactcttatttcaaggctccaaaatttctctccccaacgtatattgggggcaacatgaatgcccccaatgtatatttgacccatacatgagtca
gtagttccatgtactttttagaaatgcatgttaaatgatgctgttactgtctattttgcttcttttagatgtaacatgtaacattAAGAATGGCAGATGC
NNNNNNNNNNAAGAATGGCAGATGCgagcagttttgtaaaaatagtgctgataacaaggtggtttgctcctgtactgagggatatcgacttgcagaaaac
cagaagtcctgtgaaccagcaggtcataatctgaataagattttttaaagaaaatctgtatctgaaacttcagcattttaacaaacctacataattttaa
ttcctacttgaatctgcttccttttgaaatcatagaaaatatcagtagcttgaattagaccaattaattttctagattgcatcatattttaaatataaac
tatgtaatcatctacaacctgaattctttctgtgtccaatttgtccaatttttttctctaacatttatatcacaaagcaattaatttgtgtgatttctgc
atatgtattt Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.PMID: 15983781Vidaud D, Vidaud M, Bahnak BR, Siguret V, Gispert Sanchez S, Laurian Y,Meyer D, Goossens M, Lavergne JM. Haemophilia B due to a de novo insertion of a human-specific Alu subfamily member within the coding region of the factor IX gene.Eur J Hum Genet. 1993;1(1):30-6.PMID: 8069649.
Direct sequencing NA 0 0 0 Haemophilia B exon
1640 chrX 138369638 138369639 RIP_Alu_chrX_138_03 0 + FIX NA NA SINE Alu Ya3a1 aaaagcgaaatgtgattcgaattattcctcaccacaactacaatgcagctattaataagtacaaccatgacattgcccttctggaactggacgaaccctt
agtgctaaacagctacgttacacctatttgcattgctgacaaggaatacacgaacatcttcctcaaatttggatctggctatgtaagtggctggggaaga
gtcttccacaaagggagatcagctttagttcttcagtaccttagagttccacttgttgaccgagccacatgtcttcgatctacaaagttcaccatctata
acaacatgttctgtgctggcttccatgaaggaggtagagattcatgtcaaggagatagtgggggaccccatgttactgaagtggaaGGGACCAGTTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGATGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGGGACCAGTTTCTTaactggaattattagctggggtgaagagtgtgcaatgaaaggcaaatatggaatatataccaaggt
atcccggtatgtcaactggattaaggaaaaaacaaagctcacttaatgaaagatggatttccaaggttaattcattggaattgaaaattaacagggcctc
tcactaactaatcactttcccatcttttgttagatttgaatatatacattctatgatcattgctttttctctttacaggggagaatttcatattttacct
gagcaaattgattagaaaatggaaccactagaggaatataatgtgttaggaaattacagtcatttctaagggcccagcccttgacaaaattgtgaagtta
aattctccactctgtccatc Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.PMID: 11700292.
- Li X, Scaringe WA, Hill KA, Roberts S, Mengos A, Careri D, Pinto MT, Kasper CK, Sommer SS. Frequency of recent retrotransposition events in the human factor IX gene. Hum Mutat. 2001 Jun;17(6):511-9.PMID: 11385709.
Candidate screening NA 0 0 0 Hemophilia B exon
1642 chrX 138667498 138667805 RIP_Alu_chrX_138_01 0 + Ya5DP77 GAAGGATGATCTCTCCTTAC TGCAAGGAGAGTTGGCATAA SINE Alu Yb8 tatacatgtattgaaatatcactctataccccataaatacattatgtgtcaattaaaagttgttataaaaaaattaaatggaactttccatcaggattag
atttacccatgtgttatgtcaaattcaaacaaaaaagagctaagtattcctacaactagacaaatattgcaaccttaatgtgttaccagaaggcagacat
attcaaccctcacgtaaacagtaaaaaagagaaaacctttatgaaacggaatgaaggatgatctctccttacaaacacaattttgcataatgcatttgtg
tctagttacatggaaaatggaaccaattgtttaaagccagaagggtatataaatgccaattttcaacaatatatatggcacaaatGAAAAGAAAGTGCTT
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAGAAAAGAAAGTGCTTaacaaaagaaaatggaaaaggcttttttaaaacagaatagagttcattagacttttcatgactataattagaaaagat
atttctatgttgctataggtagagagatgcagcaagagtaaaactgcaccatttatgccaactctccttgcatagtgactgcaacttaccaatgaattat
ttccaatctaatttaccatttgaggacttgaaatagaaaatttaaaaaaacagatatacaggttttaagagataggagaaaagaatacccttgaagaaaa
gcacggatatctaattttacaaagcagaatattttcaaatgcctgtttctgggtctcatatatcctgtacctcatttgaggttcgaaatgtgttacttca
aaataat UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intergenic
1652 chrX 139942856 139943175 RIP_Alu_chrX_139_01 0 + Yb8NBC8 AAGAAAACTGATGGGGAAAG CCAACTAGAGAAACGGAGAA SINE Alu Yb8 attatatatttgttggcttctgatttggaagctatgtgaaggcagaaacatttggttagttttattcactgcaaaatcacccagtgcctagaagagtact
tcacaagtgggaatctctcatgaaacacttgttgagtgattgtgtgactgattgtggactaacttatactaaaagtgaaaataaataaaatattagctct
taaggcaaaaagatgttcaggcaaggagtgccgagtgaatctgagcacggagctattgcagccaactagagaaacggagaaacttggaagcttggaagtt
atagataaggaaataccaaagaagagtttgaagattacagattaatccagtatcttaggactagaagagaatgtgaatatttgtcttAAGAAGAGATGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAGAGATGGTgagtgggaaagtgatgtaattagatatgttccatgcatatcataattattgtatgtaattattggtat
tagtgccttaatttactctttgataggcctaggttctaccctttccccatcagttttcttctgagttcccaatctactaggtagttgaacaggtaaaatc
tgtttatttaacttcatattaatctattcctatgtaatgtgtatatgtatcatgtgtgtatatattatataatctatatgtatacatttctactaagctt
atgttcaatgttagcagtagtttctttttctccagtccttaataaagtaattaatattctgatgaaaacagagttaagatacttatgttaggctgggcgt
ggtggctcacgcctgtaat UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
1680 chrX 143548839 143549132 RIP_Alu_chrX_143_01 0 + Yb8NBC578 TTTTTGCAGATGCTTCCCTA CCCTTGATCCAGATGTGATG SINE Alu Yb8 cttgcccaaggaagcacaaattataaatgacaaagacagaatatgaatccatgtctacctggctccaaagacattatatacctcatcacattcgtaagca
atgattttatcactggcttcaataatttgatattgattccctcccaatgcaggtcaccgagtcttcatacacagaaattattcttcactcatggccccag
ctgcgtctcagtgaatttttttcccaagaagacgaagcagagtaataggctacacataggctacacacttttctttctgcaaacaaaatggtaagggtga
aatctttctctttcaataagggctcaagtaatactctctcctttgaaagtgaaaatgtttttgcagatgcttccctactcttcttcAAAAAGAGATTTGT
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA
GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGA
GATTTGTgccatctgctcatcacatctggatcaagggtagtatgtctaaagattttttttcatttcattaaaaacaggaaggaaattttttttagttccc
aattgtgaaattatataatttcaacctttacttaggagtgctcagttacaactatcagtggtatctaactttgtcgtattctcacaataaaataaggatc
ttcttgttccagatacaaagaggcaacatgtagagtaaactgtgctggctttaggtaagacaaaactgactggagtcatggcctgactgccttactatga
gaaagctgtagaatcatcacacgagaggttagaaagtaatttattttcacttctcttgtctgcaaatgagaaaattgaaaccaataatgggta UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.PMID: 14604797.
Candidate screening NA 0 0 0 NA intergenic
1684 chrX 144141548 144141859 RIP_Alu_chrX_144_01 0 + pAluX-142293100 NA NA SINE Alu Sq gcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaattcaagaa
acaacataagctggtgaacttgcagagaaaaaagaatatgcttttacattgttggtgggagtgtaaattagttcaaccatgtggaagacattgtggtgat
tcctcaaagacttagaggcagaaatatcatttgacccagcaatcccattactggatacatccccaaaagaatataaatcatcccattataaaaatacatg
cacgtgtatgttcattgcagcactattcacaatagaaaagacatagaatcaacccaaatgcccatcagtgatagactggataAAGAAAATATGGTACATA
GGTCCGGGCACGGTGGCTCATGCCCGTAATCCCAGCAATTTGGTAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGCTCAAGACCAGCCTGGCCAACA
TGCCAAAATTCTGTCTTTACTAAAAATACAAAAAATTAGCGGGGCATGGTGGGGGATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATCA
CTTGAACCCGGGAGGTGGAGGTTGCAGTAAGCCGAGATTGTGCCACTGCACTCCAGCCTTGGCAACAAGAGCGAAACTCTGCCTCAAAAAAAAAAAAAAA
AGAAAGAAAGAAAGAAAATGTGGTACATAtactccatggaatactgtgcagccataaaagggaatgagataatgacctttgcagggacatggatggagct
ggaagccattatcctcagcaaactaaggcaggaacagaaaaccaaacactgcactttgtcacttataagtgggacctgaatgacaagaacacatggacac
atggggaggaacaacacacattggggcctgtcagaatgggttgagggagggaaagcaccaggaataatagctaatgaatgtgggcttagtttctgggtga
tgggttgatctgtgaagcaaaccaccatggcacacctttacgtatgtaacaaacctgcacatcctgcacatgtaccccagaactaaaaataaaagttgaa
gaaaaataaaa UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1720 chrX 148782405 148782702 RIP_Alu_chrX_148_01 0 - pAluX-146513150 NA NA SINE Alu Sp ctcctacatcgcacatccgcacgaccctgtgagagtcagggcagaaaaggaaagctaaaaggcggacaaatgagtgcaagagagcaaaaaagggaaccct
ccctaatctaatgggcagggcactggacgcatgcgagcacctcctccttgggggagaggtcacagccttcagatggaggggcagtgggacactccatgat
ctctggggttacttacaatttggagtgcttaggtgaatactgagtccaaaacagccctgcaaagacacagaagaacaagcccctgtgcggacgaggtctc
tgaaatacaaaaagccaacatggggttagaggcagaattcagaaagagctcctacaactccataccaacaaggcaaatgactcaatAGAAAAATGGGCAA
GCCAGGCACGGTGGCTTACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCGAAGTTCGAGACCAGTCCAACCAACAAGG
AGAAACCCCATCTCTACTAAAAATACAAACTTAGCCAGGCATGGTGGCGCATACCTGTAATCCCAGCACTCAGGAGGCTGAGGAAGGAGAATCGCTTGAG
CCCAGAAGGCAGAGGTAGTGGTGAGCCGAGATTGCACCAGCCTGGGCAACAAGAGCAAAACTCCGTCTAAAAAAAAATGAAAAAGAAAGAAAGAAAAAGA
AAAATGGGCAAaagccatttcctagacgaggaaagcaggctgaccaaaaagcatctgaagggaaaccatgaatcagggtcaaagcggtcccagactggcc
gtgccccggaacactaggcaggatcaaacgtgaaccatctccagagaagggcaacttcctcctgggcctcagagtcaaaaaagcacagcgaggagaggtg
gctgcactctggaaagtgtcagtggggaggcaaaggaagaggaaggcggtgacaggctcagaaaacaggaggagttgcacggaaattagtctgagcaaaa
agaatgcttctctaggggagcatgtgggcagaagagaaggactgcacagccggggatgctgagcacggagaggcaaggtgatggcaaattcgcaagg UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1723 chrX 149221716 149222040 RIP_Alu_chrX_149_01 0 - pAluX-147322023 NA NA SINE Alu Y aaaactgtgttaagagaacacataccatttacaactgctgcatagaaaatgcaatacttagatatttaatataatataatgtgtataggatctgcatcca
gaaagttacaaaatgcttttgtaagaaataaagactcctgtgcatgtatcctggaacttaaaataaaataaaatataaaaaatcaaagaggagcacaatg
agatttcctgtgacctattaaaatccataaaatttatcaaagaaatttacatacgaagtaaatcttgatagtagttccaatcacaataaattatacttgc
aactgacatttataagcaatttcttttctctctttaaaaaaactctatattttctttatgaaaatagtgattttttaaaactctactcTAAAATGGGACA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAGAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAATAAAATGGGACAaaatatttgtaatctgaagtgtttcaaattttgtactctattgctgcagtcttatactacatca
acaagtatgaatacatttataagaatatatttaaaatattttcacttattgtatttcccttgaaaatattgacatttttgaattttaataaaaagaattc
agaaaaaaagagttgaacatcaaatagaaataataataaacaccttttttgtgctcataaaagaataaagacctaaataaaagaggagacatactatgtt
tactgcctagaagactcaacatagtaaagatgtcaattcttgaattgacctgtaggtttaatgcagttctcatcaaaatctcagcaaagttttttgtaga
cgtagacaaggttattctaaaata UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
1741 chrX 151558222 151558543 RIP_Alu_chrX_151_01 0 - pAluX-149665515|pAluX-149635670|Ya5NBC131 CCCAAGATCTAGGTGATGGACAC GCACTTGAGATAACCTAGTTAGAATGC SINE Alu Ya5 cgaacactgggattttgttgttgttgtcgttgttctccaggacttatcagagaacatacagctcaataggacatggaataattagccccaaacagaagct
tcttccataaaattcagttaagtatttcctcttagagaatgcacttcaaaatttggttgtgcgggagttttgcccagccaggtgcagctcaaagctccta
gaatgtgagtcaaagaccaactccttccctctctcccagctgctttcccatccaaaccactatattcatccactttgttaccatccagaatctagcccgt
gcttacaattggtcaaattgcacttgagataacctagttagaatgcctttttaatggagtcagctctggctctccctgcctggcAGAAAAGCACCTGGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCTGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAAGCACCTGGCCagtggcttctgggtcacccttcctgggaaattcagccttatcgctcaggaaacccttgcagat
gatgggtgtccatcacctagatcttgggctgtgttcaacagcattgggcaaaaacacaggacaccttccattccagccccaggtggagattcctctctct
tcatccccatcctaaagaaactgctcagggtagcattccattccaggcttttctctcaccctctgagaatctggccctggacccaccgggcatcattaga
atcagctccttcagaaggaactgcaggttcccagatcccaaattgccccagctcagggcatttatactcaccactctcacctggaaccccacaccctcac
ccctgtcttacatttccacta UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Genome comparison|Candidate screening NA 0 0 0 NA intergenic
1748 chrX 152525511 152525512 RIP_Alu_chrX_152_01 0 + ABCD1 TGGCCTTATTCACCCAAGGCTCCAAG GGATGGGGTCCAGCGTCCACAG SINE Alu Yb9 attgttgttgttaccgtgaacttcactgactccaggcccctggcctcctccctgcacacagcccgcctccagcctggccggcattttcccaaagtaggca
tttcctagctccagcgaggaccatggagtcagtgaattgaggagcctgaggtccatgatgcagagcccaggggccactgtggcatctctgggccactctg
gcacctggggaggcagtggggtctgtactgtcagtctagagacataaagaaagtgctttttgggccgggcgtggtcgctcatgcctgtcatcccagcact
ttgggaggccgaggtgggcagatcgcttaagcccaggagttcaagaccagcctgggcaacatggcaaaccccgtctctacagaaatttttaaaaatacac
nnnnnGGAGAATGGCGTGAACCCAGGAAGCGGAGCTTGCAGTGCGCCGAGCTTGCGCCATGCAGTCCGCATCCGGCCTGGGCAACAGAGCGAGACTCCGT
CTCAAAAAAAAAAAAAAAAAAAAAAnnnnnaaataagccaagtgtggtggcggtgcctgtagttctagccacttgaaaaaaaaggctaaagtgagagggt
ctcttgagcccaggaggttgagcctgcagtgagccatgatcccaccactgcactccagcctgggcaacagagcaaggccccgtctcaaaaagaaaagaaa
gaaactgccttttgtccccagtgactcaggaggccaaggtgagagagtcgcttgaggccaagagtttgagaccagcctgagtaacatagcaagaccctgt
ctctaaaacaacatttaaaaattagccaggcatggtggcgtgcatctgtaggcccagctactcaggaggctgaggtgggaggatcacttgagcccaggag
ttggagactgcggtgagctgtgatcatacc Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.PMID: 15983781Kutsche K, Ressler B, Katzera HG, Orth U, Gillessen-Kaesbach G, Morlot S,Schwinger E, Gal A. Characterization of breakpoint sequences of five rearrangements in L1CAM and ABCD1 (ALD) genes.Hum Mutat. 2002 May;19(5):526-35.PMID: 11968085.
Direct sequencing TSD unavailable 0 0 0 Adrenoleukodystrophy intron
1757 chrX 153694164 153694165 RIP_Alu_chrX_153_01 0 + F8 ATATCCAGATGGAAGATCCCAC GCTCCAGGCATTGATTGATCCG SINE Alu Yb9 tcgagctttaccaagttgtgaaaatgaggtggtattttttttttgtcaattatttagagcttcaggtacaaagtgttcaaagcttcaagtatatctgccc
tactctgagaactctgatgatttctaccagcaatattcattttaaatttgataatgatgtaaacttgtatttatttcctgacacaagcaaccattccaga
aaggaagaaagctgtaaagaagtaggctgagtaggtagggaacctctgcccacattgctactcactattgctgtacaccagaaaaagtgtgctcatccca
gcatgtagatgctcgccaataaggcattccacccgccaaattccagctttggatggtaacatttccactgtctcaaaaacaccttatAAAAACCAACAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGGTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCGAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAGAAAAAGAAAAACCAACAGGaacagaaattatttcttttcactaaaaaatgagcatgagatacattggtttatgcgaaatatcagag
tagacctaccaaatttggtagttccactacttttggacccctcaaatgcaaagtgcttgctacgtgacccttacagttgggggttgtggagattgagttc
tgaccactcccctccccccaggagatgagaaacagggtgactgaattctttgatggttgggacaggagaatgctactgcattatgattgacctacattcc
cagggtctttctgagcaaaaggtgtgtttcccattggccagatgtggactctgtgaaacagataagtcagggtgagttccctctggatccagtccactag
agctgcctacaagggtaaag Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.PMID: 15983781Ganguly A, Dunbar T, Chen P, Godmilow L, Ganguly T. Exon skipping caused by an intronic insertion of a young Alu Yb9 element leads to severe hemophilia A.Hum Genet. 2003 Sep;113(4):348-52. Epub 2003 Jul 12.PMID: 12884004.
Direct sequencing NA 0 0 0 Hemophilia A intron
1757 chrX 153722042 153722043 RIP_Alu_chrX_153_02 0 + F8 NA NA SINE Alu NA agtctatctgtgtgagggtgctcggggtcaaatgtttcatgtttttggaccactgggttgaggtgtcatccacaattatccttttttcaagttctgtttc
ttctagtgggagtctgaattgtttcaaagctctcttactacgttgcgtgacaaaattctgctggcttgtattaggagatatccttgtggtgcatgcatat
ttctctacaatttgcttggtttgatttcccaagccttccaagttttcttcctcccctttttttgagaaatgagctgtgtgtttctttgttctatttgttg
aatcatttaatgacctaaaatcttgaagtactggagcatatgccccgtcatatgaaccttctacattttgcctagtgctcagtaagaaaaggttcttcat
nnnnnNNNNNNNNNNnnnnngaaattcttagtgccagtcactgtatgtatctgaggcaaaactacattctcttggattaatgtttccttcttttctattt
cttcctgaatttttttttcttgattgtgtgtattattttcatgtaaattatccaagttagtaagaaataggtttctgctgcttggaaaaaccatctcttt
gagtcctacgtcctttgtaaattcaccctttcctactaccactttgtttttctcagacaagaaattctgaccttccacagatttttctggtcctaaggat
actaattgctttggactggggccttgcccagagttcagagagttctttccatgagtcctttgtatccaccttgctgattctggcaagaatagcatcttaa
agaacgacatatctggattt Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.PMID: 15983781Sukarova E, Dimovski AJ, Tchacarova P, Petkov GH, Efremov GD. An Alu insert as the cause of a severe form of hemophilia A.Acta Haematol. 2001;106(3):126-9.PMID: 11713379.
Direct sequencing TSD unavailable 0 0 0 Haemophilia exon
611 chrY 3437693 3438000 RIP_Alu_chrY_003_01 0 - Ya5NBC325 CTTCTCTCTCTGAAATGCCAAT CAGTTGAAAGGTTTGACAATACACC SINE Alu Ya5 aatgccagcctttgcagatgaggaatcagtgtaaatcctggcatcatgaaaaaactgaatattgtgagaccaccaaaggataacactagatctctagcaa
tggatcctaaccaaaccggatattcagaaatgatagatgaagaatacaaagtatggattgtgaggaaactcaaagaaatccaagagaaggtttaaaatca
gcacatagaaacaaaagcaatctgagaaatagaagagataaatatatttaaaaatcaaacagaatttttggaaatgaaagaatcacttatgtaatttgga
actacagttgaaaggtttgacaatacaccatattaagcataagaatttcagaacttgaagatgggtaattcaactaagtcagataaaaatAAAGAAACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAAAAAAAGAAACAAatgtaaaagaataaacaaaaccttcaagaaatatgggattatgtaaagcaaccaaacctgtaatatattggcatttcagagag
agaagaagaaaaattaggcaggctagacaacatatgtgagagaataattcataaaaattgccataatcttgctagagaggtagacatctaagtacaagaa
atccacagaatgccttcaagaggctatacaaaacaaacattatcaaggaatatagtcactgtattattcaaggtaaacactaaatttaaaaatcttaaag
gcagctagagaaaagggttaaatcacttataaaggaaaatcgattagactaacaacatacttttaagtagaaaccttacatgccaaaagatattggggag
ctatttt UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
620 chrY 4590180 4590181 RIP_Alu_chrY_004_01 0 - Ya5NBC313 CACTTGCCATTGACTCCAAA GGCTGGGTTGTGTGAGTTCT SINE Alu Ya5 aggcctaaagctgaagtaaacagtggtgctaaatatctcacattctaaagcagtggtttttataactttatcgtgtgtcagaatcaccttcagggactgc
caaaatacacattgcttggccccacctctaggtcctaattcagtacatctgaagagaagcctgagagttggaatttcccacaagtttataagttatgcta
ataatgctgttccagaaacacactttaagaaccactgcgataaagagagctaaatacatttctcagggcttaagagttgaccaagcctgctatactacca
cttgccattgactccaaattctgtcttcgcaatttgtataagaaaaattagaacaggagaaataaatagttgttagattcaatagcttttAAGAAGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGTGTCaaggtgattgtgaaaaccatttctgttcttattctggctataggtccatctaagaactcacacaacccagccagccttttcatgcctaccaaa
cacaggttattaatgattgatgttagacacaaaagtattgacaatccacagataaatgactacaatagtaccggatatctcttccttttccttccatcct
tcatatttctgcacacaggagaaacttagtcttaatgagggaaaggttgcctcaggtccggatggcagttcaagcttgtgatttcagggtggtggggagg
agatgagattaaagtgtggcattcacaagtctctcaatctgttacctgttctgtaaaatggagataattgtaaattatgtggccattgaaaagttta Other - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
630 chrY 5987356 5987671 RIP_Alu_chrY_005_01 0 + Yb8NBC268 TGGGGATAGAGGAAGAAGACAA CCTTTTCATCCAACTACCACTG SINE Alu Yb8 taagaactacttactacttcatattagaactactactgtacaaccaaaccccttcaaagagaaagagcctgtaagagtttgtaagagcaaataaagatat
ataaaaattatattctattttttcttaaaaaaataagtgtgtaaataattatatattttgcctactcagttgttccaattaagcctttcaaacagaactt
cttcaactaggttctatagatgagtttcaagaagtcctagccgatgaaaattatatgcaacaatttgtatataggtgcaaaattacatgtatttgatggg
gatagaggaagaagacaaaactttatcagatttccagagggagccatgactcaataaagtttaagggattgaggactaagaattttAAAACTGGTAGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAACAA
ACAAACAAACAAACAAAAACTGGTAGACAagagatgcgaaagaagactgttgaaataatccaaatagtaagtaataaggctgataatatgtcagtggtag
ttggatgaaaaggttagatttgagaaatatttctgaagtagctgctttatctcaagtaccctaggaaacagtgtctgagatagaaatttgcattcaaaag
attgttgaggagagctcttggaaccaaccctgtaaggccctgaaggaagcaggactgggtagaaggcgaaataaaactgcaatgcttttataacagaggc
ctcagcgcatcttaaaagcagctctgagcttggtgtggcccctcagaaatgtgtggcactgaggcaatagagcgaggccttttcattcctgcattgacct
gtgagaagatgcaaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
640 chrY 7313633 7313951 RIP_Alu_chrY_007_01 0 - Yb8NBC160 CCACACATGGGTACCAGTCC TTGCTTACCCACAGTCACCTC SINE Alu Yb8 aattcattcaattcattatggcatgctctctctcttacactaaattttttttttaaaggtagagatacaattattatcttcttccagcaatagagacttt
ggcagtatatagtttaggcacaggctcagccacaatgacatcatctaagatcagaaagagaacagaaagaaaaggagccactgcagagtgcactaagtta
gggcagagtcaaccctactacacctgcaacccacagcctctcctctgtgggactcactgcttcctcccctccatctctctagtgcatgaaccacatctct
aataaacacacgactctttctctcctgccccacatcagggatccccaagccctaggccacacatgggtaccagtccctggcctgttAGAAACTGGGCTGC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCAAGTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAGAAACTGGGCTGCataataggaggtgactgtgggtaagcaaacaaagcttcatctccccattgcttgcctgagctccccat
tactgcctgagctctgcctcctgtcagatccgtggcagaattagattcccataggaactcaaaccctattgtgaactccacatgcaagggatctaggttg
cactctccttataagaatctaatgcctggtgatctgttactgtctcccatcaccatcagataggactgtctagttgcaggaaaacaagctcagggctccc
actgattctacatgatgctgtgttacataattatttcataggtagtatgacataataatagaaatacagccagatgtagtggcttatgcctgtaatctca
gcactctgggaggctgag UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
654 chrY 9056335 9056634 RIP_Alu_chrY_009_01 0 + pAluY-8978451 NA NA SINE Alu Y caagagacatgccccagattaatactttgtatccctcaatccagtgaaattgacacacagtatgtcatatgttcaccccttttcaacttgaatctatcca
catctcctgagataatacgtactcttaaaataaagacaaaaatgaggttatagttacacctaacataatacaaaaatgaggtcatatttacacgtaacat
aatagaactatccttcatacaatcaggaacacaccaatccccaacccgaacactattacgtaaagttacgtatactcaaatgatgatatgaagtcaatat
atcttatgtcacataataaaaggaaagaaaaaatgaagatattttcttactacatgtgtatatatgcacaaacttttttagcaaAAGAAGGAGGAAATAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAGTGGC
GTGAACCAGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AGAAGGAGGAAATACttaagacaattaaagtcgtcatttctgcagctggtcacgtgttttcaggcggtattgatgactggcttctactccccattgtgtg
ttttctttgccttcagtaaggtattcagcaggtcattttttttttcctggtttgtgacccaaaccttaattcctgaaggatctgaaccatttggagtcct
gccaggattgggctcttgtagtttcctattgaccttaatcgcaggtcatagtaatactaagacacatcctaatgtaccttctctattccattcatactct
tccttacctaaattgtggagcagtagactgatttcctccttgatagtttgggtcaatcacctcagtcaatactgtgccttccttcttagactgttgact UCSC - Wang J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics: a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.PMID:16376498.
Genome comparison NA 0 0 0 NA intergenic
688 chrY 13579023 13579330 RIP_Alu_chrY_013_01 0 - Ya5NBC155 TGTCAATATCAGACAGATCCATGAG ACTTCCAACTATGTGGTCAGTTTTG SINE Alu Ya5 caagacccatcagtgtgctttattcaggagacccatctcatgtgcagagatacacataggctcaaaataaagggatggaggaagatctaccaagcaaatg
gaaaacaaaacaaaacaaaaaagcagggattgcaatcctagtctctgacagaacagactttaaaccaacaaagatcagaagaaacaaagaaggccattac
ataatggtaaagggatcaattaaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcagcaagattcataaggcaagtccttaaag
acctacaaagacacttagactcccacacaataataatgggagactttcacaccccactgtcaatatcagacagatccatgagacAGAAAGTTAACAAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAA
AAAAAAAAGAAAGTTAACAAGGAtatccaggaattgaattcagctctgcaccaagcagacctaatagacatctacagaactctccaccccaaatcaacag
aatatacattcttctcagcaccacatcacacttattccaaaactgaccacatagttggaagtaaagtcctcctcagcaaatgtaaaaaaacagaaatgat
atatttatattattctaaatgtttcttggtgcctatttttttttctaattttttggttgttcagtttggacaattcttattttcaaatgtattggttttt
tgtgttatctccttataccatggagcttcttccaccaaatatactggtgttgttgtcatttactctgaaatgctcaaaatactcttgattgtcatgagtt
gatttta UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
692 chrY 14121471 14121776 RIP_Alu_chrY_014_02 0 + Yb8NBC110 AATAGGCTGAATGCCCCAAT CTAGCATTGCAATCCCTGCTTT SINE Alu Yb8 tctcactctttgctagcacagcagtctgagatcagattgcaaggcagcagtgaggctgggggaggggcgccagccattgctgagttagttgtttgattag
gtaaacaaagtggctgggaagctccaactgggtggagcttcaggaacttggaagagttcctgaaggaagcactaaatatggaaaggaaaaatttttacca
gccactacaaaaacacactgaagcacacagacaaatgacactatgaaaaaactacatcatcacggctgcaaaattaaccagctaacatcatgaagccagg
atcaaattcacatgtaacaatattaaccttaaatgtaaataggctgaatgccccaattaaaatgcacagactgacaagctagatAAAAAGATAAGACCCG
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAATAAGACCCAttagtgtgccatattcaagagacacatctcatgtgtaaagacacacacagattcaaaataaaggcatggaggaaaattt
tccaagcaaatggaaagtagaaaaagcagggattgcaatgctagtttctgacaaacacaacttaaaccaacaaaggtcaaaaaagacaaagaagagcatt
acataaagttaaaggtttcattcaacaagaaaaactaactatcctgagtacacatgcagcaaatacaggagcacccagattcacaaaatgagttattaag
acctacaaagagacttagacatctcccaagaaataatagtgggagactgtagtagcccgctgtcaatattacacctttcagacagaaaattaacaaagat
attca UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
693 chrY 14253231 14253520 RIP_Alu_chrY_014_03 0 + Ya5NBC154 AAACACCCTAGATGCTGGGTAA AGATGAGTGAGCCTCAGAACAAAG SINE Alu Ya5 taagcgggcctgtgggtgacatcaactcatttacataggagggctataaagtagcgcctgcccatcccgtcctggcaactccgcggtggacactgtgtag
actagatttcactcccttacgcgcctggcttaggtaagccccagggcccctgcatccttactccttctaccctccccttcatgccgcgcttgccccttca
ttattcgcgtccctgtgaagacatcccctaaagccaagccgagtgattatccccgggaaagctgccttggggaggtggggatgcgaaacaccctagatgc
tgggtaatgcggtggggaaatcgatgatttaagaacaaagcaaataaaccggcgtttatgtactgccgctcggagggttcgtgttAAAATTTCTTAGTGT
GCCGAGGCGGGCGGATCACGAGGTCAGGAGATGAAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTA
GTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAAATCCCGCCACTG
CACTCCAGCCTGGGCGACAGAGCGAGTCTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTCTTA
GTGTttgctctcaaaggtattgtgcgttgtcttggaggctgagatgtgggaacagacagatcctttgttctgaggctcactcatctcccgagccccgagc
cgtctcccagcctcagacggctctgcgggctgcatctgtgcagcctggcagcggcggcgctgcgctgtgacattttcacagcccttcttgcagaggcatg
tgtgctagggatgccgaaatgccgagagcgccggcaggactagcttccgggccgcgctttgtgtgctgggctgcagtgtggcgcgggcgaggaagctggt
agggcggttgtcgcaagctccagctgcagcctccgcctacgtgagaagactagaaagcgggcgcaggaccaggcctgcgttgtttgcag UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA promoter
694 chrY 14319917 14320228 RIP_Alu_chrY_014_01 0 + Yb8NBC109 GTGCAACTTCAGTTTCTGCTAAGAT CATGGTTATCTGCAAAGACTATGAC SINE Alu Yb8 gtttagagagcagtctttgtgagattcaaatagatcttacaccttgccagagactgaaatgcccattgatgaaaatactttgcacagaaggactgctgct
gaggtggaagttctcagagagctctggaatcctatttggctcatgtgattaactgtaaagtcagaatttcaaaagccctcaataaatatataacacaaac
aatggttttcaatcatttgtgcataagagcagccattaggtactacctttcctaaggtgagtaaggttaaatcctgaagtagctaagaaacgttgcaagt
catggttttaactgtctgtgcaacttcagtttctgctaagatttttcttgatgaattttcagttatatttatttataaaaaatcctatattAAGAATCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAATCCAacagctacaacagttaaggaaataaaagaactaagactacaaaactcttctagtcattacgtatcacctaaagtacacta
tagccagttgtaaatttccatcatgtcatagtctttgcagataaccatggtgaagaatgtccctggaggtgaaggtggcaagtaagctgtaatctcacca
ctgcactccagcctcggcgacagagtgagaccctgtctaaaaaaatattaataataatagtaatgtcattcagagtcatgtaaaattgttttctttctgt
gttggtcttgcatttttttcttctttgaagatgattttctttgtttttttttttttcagactttttgtctttattagtggttgacaggggctggggaggg
aggaatgaaaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
703 chrY 15512773 15513073 RIP_Alu_chrY_015_01 0 - Ya5NBC219 CCTGGCAACCACCATTCTAC AAACCTGGAGGGCATTCTTT SINE Alu Ya5 aatagaggtataaagggcaaaaaagtttgggaagtgtttattatgtgacctccatgacagatgtatggagtttccctcctttttcttttttctttttgta
tgtacttggtactatttataataaaacagtttatataaaaatattaaaataacaatgaccttctattgtgtatatatatacaacattttctttatccttc
atctgttgataaatgcaggttgattccatgtctttaccattgtgaataatgctatcattcagccttaaagaaggaatcctgtcattcgcaacaacatggg
taaacctggagggcattcttttaagtgaaataagccagataagtaaagacaaatattgcatgaacttacttatatgtgaaggctAAAAAAGTTCAATGCA
GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCG
TCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAGTTCAATGCAtagaagtagagagtagaatggtggttgccaggggctgggagagggagtggattgggagagggggacatgttgctcaaagcatac
aaagtttaagttacagaagcggaataacttttggtgatccactgcacagtattgtgacaatggtgaataatgatgcattgtgtatttcaaaattgttaaa
agagattataaacattcttaccactgggacataagtatataaagtgatggaaatgctaattgtcttgattcaatcattccaaagtgtatacacatatcat
atcatcacattacacccaataaatgtatatgttttgtttttaccaattaaaaatgaagcaatataaaataagatttaaaaataccaacaacaatattgtt
UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 58 445 129 NA intergenic
709 chrY 16281222 16281520 RIP_Alu_chrY_016_01 0 - Ya5NBC174 TCACTCTTTGTCTTGCTGACTACAG GCTATAGCTTCTATTTACGGGGAAT SINE Alu Ya5 tgggcaccactgagatatagcaaattgcacagagaaaagctcctattcagctgtgtatagtttccctgaatctcatctttccccaaaaccatctgataaa
ttaccttccaattgattaaatttcctctaggaaggtactatatacatcaacctcagaccttgtttctatacaaaatcaactgttaccatggctgactgtt
cacttcctgaatggctgttaaaatggctaactattcactgcctacttcaacttcctgagttttacacccatgctcactctttgtcttgctgactacagct
tctgctacaactatttagatataccagagaaaacaacaacaattgacaagactggagcttcggcaaaagtggtcgcacacattaaaaagTGAATTTTTAG
GCCGGGCGCGGTGGCTCAAGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTGTACTAAAAATACAAAAAATTATCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAATG
AATTTTTAGtaaaaacaaacaaacatcaaacattagtcttttattctttgagaacttaactgcgattattctctattccccgtaaatagaagctatagcg
caatatgaaaattagtccatttcaaaaataactatagtgaagcattcagcctgtacactatatacatctgtatcaaaaacaatgtaaagtttgtggaaat
aaataaagacttccttcctctttcacaaatgagagcaaacagagactttttagtgagagcttgctccaacaagggagtctggcgctatcacttgcattta
ggaaagactcaaaggccagtggaaatactttatggtgaaaacatgttacaggtagttaggcatgagctggacaggagaggactctccctgccacctac UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic
778 chrY 25321934 25322274 RIP_Alu_chrY_025_01 0 - Yb8NBC108 TGTCACTTGATTGTCCGCATA TCAATGGCATCCTGAAAACA SINE Alu Yb8 cctgcttaactggaatcgtacatataaaattcactgaatctctctaatagcgtcataatactttaaatgaaggaagtaatgatcatgtcctagtcctcag
ccagcaggtggcgctcaaagctaacaaggtaagcaatgtacctcgttttctgcaacgtacttcacttttaccatggctcgagtagcagggattgttcaat
tccgactgtgtacttatacataattatataatgtatatataaaaatccacaatcaacagacaaactttggttagttttaaactacggccaaaaatataaa
tgaatgcttcggataagcaaaagtttagtttgaaagaaagtaccatcgtaaccgtcaatggcatcctgaaaacaaactgcattaAAGAAGTAATTTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAA
TAAAATAAAACAAACAAACAAACAAAAAAACACAAAACACAAGAAGTAATTTTCTTaaccgtatcttcaagtgagttgttgaattttcaaatgagaaatg
ttgcaatagtaaacaggggtgagcttcaagaccgtcataatcacaactctcattgctatttctagcaaacatattccttgttatatgcggacaatcaagt
gacaaagacagctaaaagctggaaaaaattatcattaaactcctgccatgtcagctcctctgccagtattatctaatgcaattactatgtgaacatgtaa
gcaaattgttatttacataaactggccaggaaaaagcctatcatttgtagtcatcaaagttacattcacagcaataggaagaggagcaaataaagagaat
gctaaaattaagaaaatatgacgtgaaaatcagaagttaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.PMID: 11469855.
Candidate screening NA 0 0 0 NA intergenic