This directory contains the Nov. 2002 human genome freeze 
assembled by NCBI. The annotations are generated by UCSC and 
collaborators worldwide.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgarchive.cse.ucsc.edu, then go to the directory 
goldenPath/14nov2002/bigZips. To download multiple files, use 
the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 
 
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chromAgp.zip - Similar to contigAGP.zip, but it unpacks to one 
    file per chromosome.  

chromFa.zip -  The working draft  sequence chromosome in one  file per
    chromosome.   Repeats from RepeatMasker  and Tandem Repeats Finder
    (with period of 12 or less) are in lower case while non-repeating
    sequence is in upper case.

chromFaMasked.zip - the working draft sequence chromosomes,
    in one file per chromosome. Repeats are masked by capital N's and
    non-repeating sequence is shown in upper case.  

chromOut.zip - RepeatMasker .out file for chromosomes.  These were 
    created with RepeatMasker at the -s sensitive setting.

chromTrf.zip - Tandem Repeats Finder locations, filtered to keep repeats 
    with period less than or equal to 12, translated into one .bed file 
    per chromosomes.  

contigAgp.zip - Description of how the working draft was generated 
    from fragments at a contig layout level. 

contigFa.zip - The working draft sequence one file per NCBI contig.
    All contigs are in forward orientation relative to the chromosome,
    which means that some will be reversed relative to their
    orientation in the NCBI assembly. Repeats from RepeatMasker and
    Tandem Repeats Finder (with period of 12 or less) are in lower case
    while non-repeating sequence is in upper case.

contigFaMasked.zip - the working draft sequence contigs,
    in one file per contig. Repeats are masked by capital N's and
    non-repeating sequence is shown in upper case.  

contigOut.zip - RepeatMasker .out file for contigs.  These were 
    created with RepeatMasker at the -s sensitive setting.

contigTrf.zip - Tandem Repeats Finder locations, filtered to keep repeats 
    with period less than or equal to 12, translated into one .bed file 
    per contig.  

liftAll.zip - A file that contains the offsets of contigs within
    chromosomes.

mrna.zip - A zipped-up file of human mRNA from GenBank.    

upstream1000.zip - Sequences 1000 bases upstream of annotated
    transcription start of RefSeq genes.  This only includes
    cases where the transcription start is annotated separately
    from the coding region start.

upstream2000.zip - As above but 2000 bases.

upstream5000.zip - As above but 5000 bases.

      Name                    Last modified      Size  Description
Parent Directory - chromAgp.zip 2002-12-04 14:32 723K chromFa.zip 2003-02-03 17:33 893M chromFaMasked.zip 2003-02-03 17:38 489M chromOut.zip 2002-12-04 14:35 150M chromTrf.zip 2002-12-04 16:57 6.7M contigAgp.zip 2002-12-04 15:43 880K contigFa.zip 2002-12-04 16:31 893M contigFaMasked.zip 2002-12-04 16:57 488M contigOut.zip 2002-12-04 15:47 149M contigTrf.zip 2002-12-04 17:00 7.2M liftAll.zip 2003-01-07 13:12 13K mrna.zip 2003-01-14 09:38 55M upstream1000.zip 2003-01-24 08:55 4.8M upstream2000.zip 2003-01-24 08:57 9.1M upstream5000.zip 2003-01-24 08:59 22M