This directory contains the June 28, 2002 GenBank freeze assembled by NCBI. The annotations are from UCSC and collaborators worldwide. Due to its large size, we are no longer providing the database.zip file for this assembly (Genome Browser database as tab-delimited files and associated MySQL table creation files). The files formerly contained in database.zip may still be downloaded individually from this assembly's database directory. If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgarchive.cse.ucsc.edu, then go to the directory goldenPath/28jun2002/bigZips. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) ------------------------------------------------------------ chromAgp.zip - Description of how the assembly was generated from fragments, unpacking to one file per chromosome. chromFa.zip - The working draft sequence chromosome in one file per chromosome. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are in lower case; non-repeating sequence is in upper case. chromMm2AxtBest.zip - AXT alignments of Feb. 2002 release Mouse (mm2) against human, generated by Scott Schwartz and filtered by Jim Kent's axtBest program. Unpacks to one file per chromosome. chromOut.zip - RepeatMasker .out file for chromosomes. These were created with RepeatMasker at the -s sensitive setting. contigAgp.zip - Description of how the working draft was generated from fragments at a contig layout level. contigFa.zip - The working draft sequence, in one file per NCBI contig. All contigs are in forward orientation relative to the chromosome, which means that some will be reversed relative to their orientation in the NCBI assembly. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are in lower case; non-repeating sequence is in upper case. contigOut.zip - RepeatMasker .out file for contigs. These were created with RepeatMasker at the -s sensitive setting. database.zip - The Genome Browser database as tab-delimited files and associated MySQL table creation files. liftAll.zip - A file that contains the offsets of contigs within chromosomes. mrna.zip - A zipped-up file of human mRNA from GenBank.
Name Last modified Size Description
Parent Directory - chromAgp.zip 2002-08-06 09:41 1.0M chromFa.zip 2003-01-02 09:59 883M chromMm2AxtBest.zip 2002-08-08 15:35 577M chromOut.zip 2002-08-01 12:31 148M contigAgp.zip 2002-08-06 09:41 1.2M contigFa.zip 2002-08-01 13:28 882M contigOut.zip 2002-08-01 13:43 147M liftAll.zip 2002-08-14 11:16 19K mrna.zip 2002-08-01 13:32 39M