This directory contains the April 5, 2002 GenBank freeze assembled by NCBI. The annotations are from UCSC and collaborators worldwide. chromFa.zip - The working draft sequence chromosome in one file per chromosome. Repeats are in lower case while non-repeating sequence is in upper case. contigFa.zip - The working draft sequence one file per NCBI contig. All contigs are in forward orientation relative to the chromosome. This means some will be reversed relative to how they are at NCBI. Repeats are in lower case while non-repeating sequence is in upper case. contigAgp.zip - Description of how the working draft was generated from fragments at a contig layout level. chromAgp.zip - Similar to contigAGP.zip, but it unpacks to one file per chromosome. contigOut.zip - RepeatMasker .out file for contigs. These were done with RepeatMasker at the -s sensitive setting. chromOut.zip - RepeatMasker .out file for chromosomes. These were done with RepeatMasker at the -s sensitive setting. database.zip - The genome browser database as tab-delimited files and associated MySQL table-creation tiles. liftAll.zip - A file that contains the offsets of contigs within chromosomes.
Name Last modified Size Description
Parent Directory - chromAgp.zip 2002-05-23 15:42 1.5M chromFa.zip 2002-05-23 16:29 901M chromOut.zip 2002-05-23 16:32 138M contigAgp.zip 2002-05-23 17:32 1.8M contigFa.zip 2002-05-23 18:14 899M contigOut.zip 2002-05-23 18:20 138M database.zip 2002-08-11 20:24 1.2G liftAll.zip 2002-05-23 15:32 27K mrna.zip 2002-05-23 17:50 38M