This directory contains the Feb. 2004 freeze of the chicken genome
(galGal2, Feb. 2004) produced by the Genome Sequencing Center at 
Washington University in St. Louis.

Files included in this directory:

  - chr*.fa.zip: compressed FASTA sequence of each chromosome.
    Repeats (from RepeatMasker and Tandem Repeat Finder) 
    are in lower case while non-repeating sequence is in upper case.
    RepeatMasker January 2004 version with RepBase libraries:
    RepBase Update 8.4, RM database version 20040225

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If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then 
go to the directory goldenPath/galGal2/chromosomes. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

The chicken sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data are 
   properly acknowledged. See http://genome.ucsc.edu/goldenPath/credits.html
   for credit information.
3. The centers producing the data reserve the right to publish the initial
   large-scale analyses of the data set, including large-scale identification 
   of regions of evolutionary conservation and large-scale genomic assembly.
   Large-scale refers to regions with size on the order of a chromosome (that 
   is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                    Last modified      Size  Description
Parent Directory - md5sum.txt 2004-02-26 09:46 2.6K chr2.fa.zip 2004-02-26 09:41 44M chr1.fa.zip 2004-02-26 09:39 57M chrZ_random.fa.zip 2004-02-25 14:28 4.5M chrZ.fa.zip 2004-02-25 14:27 9.6M chrW_random.fa.zip 2004-02-25 14:27 79K chrW.fa.zip 2004-02-25 14:27 1.3M chrUn.fa.zip 2004-02-25 14:27 39M chrM.fa.zip 2004-02-25 14:25 5.4K chrE64.fa.zip 2004-02-25 14:25 627 chrE50C23.fa.zip 2004-02-25 14:25 3.4K chrE26C13.fa.zip 2004-02-25 14:25 67K chrE22C19W28.fa.zip 2004-02-25 14:25 16K chr9.fa.zip 2004-02-25 14:25 7.0M chr8_random.fa.zip 2004-02-25 14:24 2.1K chr8.fa.zip 2004-02-25 14:24 8.6M chr7_random.fa.zip 2004-02-25 14:24 920 chr7.fa.zip 2004-02-25 14:24 11M chr6_random.fa.zip 2004-02-25 14:23 1.4K chr6.fa.zip 2004-02-25 14:23 10M chr5_random.fa.zip 2004-02-25 14:23 11K chr5.fa.zip 2004-02-25 14:23 17M chr4_random.fa.zip 2004-02-25 14:22 338K chr4.fa.zip 2004-02-25 14:22 27M chr32_random.fa.zip 2004-02-25 14:21 9.9K chr32.fa.zip 2004-02-25 14:21 308K chr3_random.fa.zip 2004-02-25 14:20 489K chr3.fa.zip 2004-02-25 14:20 33M chr28_random.fa.zip 2004-02-25 14:18 1.9K chr28.fa.zip 2004-02-25 14:18 1.2M chr27_random.fa.zip 2004-02-25 14:18 216K chr27.fa.zip 2004-02-25 14:18 781K chr26.fa.zip 2004-02-25 14:18 1.1M chr24_random.fa.zip 2004-02-25 14:18 31K chr24.fa.zip 2004-02-25 14:18 1.8M chr23.fa.zip 2004-02-25 14:18 1.5M chr22.fa.zip 2004-02-25 14:18 686K chr21.fa.zip 2004-02-25 14:18 1.8M chr20.fa.zip 2004-02-25 14:17 4.0M chr2_random.fa.zip 2004-02-25 14:17 19K chr19.fa.zip 2004-02-25 14:15 2.8M chr18.fa.zip 2004-02-25 14:15 2.7M chr17.fa.zip 2004-02-25 14:15 3.0M chr16_random.fa.zip 2004-02-25 14:15 87K chr16.fa.zip 2004-02-25 14:15 58K chr15.fa.zip 2004-02-25 14:15 3.7M chr14.fa.zip 2004-02-25 14:14 6.1M chr13_random.fa.zip 2004-02-25 14:14 352K chr13.fa.zip 2004-02-25 14:14 5.1M chr12.fa.zip 2004-02-25 14:14 5.8M chr11_random.fa.zip 2004-02-25 14:14 347K chr11.fa.zip 2004-02-25 14:14 5.4M chr10_random.fa.zip 2004-02-25 14:13 1.1M chr10.fa.zip 2004-02-25 14:13 5.7M chr1_random.fa.zip 2004-02-25 14:13 399K