This directory contains the Oct. 2004 assembly of the fugu genome
(fr2, JGI V4.0) in one gzip-compressed FASTA file per chromosome.
This assembly was produced by the US DOE Joint Genome Institute (JGI).
For more information on the fugu genome, see the project website:
http://genome.jgi-psf.org/Takru4/Takru4.info.html
http://www.fugu-sg.org/
Files included in this directory:
- chr*.fa.gz: compressed FASTA sequence of each chromosome.
Repeats from WindowMasker and Tandem Repeats Finder (with period
of 12 or less) are shown in lower case; non-repeating sequence is
shown in upper case. Note, this sequence is *not* masked with
the RepeatMasker .out specification.
- md5sum.txt - checksums of files in this directory
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/fr2/chromosomes. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
1. These data have been freely provided by the JGI for use in the
UCSC Genome Browser.
Name Last modified Size Description
Parent Directory -
chrUn.fa.gz 2007-02-14 11:22 113M
chrM.fa.gz 2007-02-14 11:23 5.5K
md5sum.txt 2007-02-14 11:28 91