This directory contains a dump of the UCSC genome annotation database for the
    Nov. 2017 (Felis_catus_9.0/felCat9) assembly of the cat genome
    (felCat9, Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/78
    https://www.ncbi.nlm.nih.gov/genome/assembly/1448961
    https://www.ncbi.nlm.nih.gov/bioproject/16726

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat9
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/felCat9/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/felCat9/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/felCat9/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat9/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat9/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql felCat9 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql felCat9 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

The Cat sequence is made freely available to the community by the
Genome Sequencing Center, Washington University School of Medicine, with
the following understanding:

1. The data may be freely downloaded, used in analyses, and repackaged in
   databases.

2. Users are free to use the data in scientific papers analyzing these data
   if the providers of these data are properly acknowledged.  See
   http://genome.ucsc.edu/goldenPath/credits.html for credit information.

3. The centers producing the data reserve the right to publish the initial
   large-scale analyses of the data set, including large-scale identification
   of regions of evolutionary conservation and large-scale genomic assembly.
   Large-scale refers to regions with size on the order of a chromosome (that
   is, 30 Mb or more).

4. Any redistribution of the data should carry this notice.

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - all_est.sql 2019-05-06 12:52 2.1K all_est.txt.gz 2019-05-06 12:52 43K all_mrna.sql 2019-05-06 12:52 2.1K all_mrna.txt.gz 2019-05-06 12:52 215K augustusGene.sql 2019-05-06 12:52 1.9K augustusGene.txt.gz 2019-05-06 12:52 2.4M bigFiles.sql 2021-05-02 03:04 1.4K bigFiles.txt.gz 2021-05-02 03:04 95 chainHg38.sql 2019-05-06 12:52 1.7K chainHg38.txt.gz 2019-05-06 12:53 376M chainHg38Link.sql 2019-05-06 12:54 1.5K chainHg38Link.txt.gz 2019-05-06 12:55 1.3G chainMm10.sql 2019-05-06 13:00 1.7K chainMm10.txt.gz 2019-05-06 13:00 59M chainMm10Link.sql 2019-05-06 13:00 1.5K chainMm10Link.txt.gz 2019-05-06 13:01 461M chainRBestHg38.sql 2019-06-25 10:57 1.7K chainRBestHg38.txt.gz 2019-06-25 10:57 1.3M chainRBestHg38Link.sql 2019-06-25 10:57 1.6K chainRBestHg38Link.txt.gz 2019-06-25 10:57 329M chainRBestMm10.sql 2019-06-25 10:58 1.7K chainRBestMm10.txt.gz 2019-06-25 10:58 869K chainRBestMm10Link.sql 2019-06-25 10:58 1.6K chainRBestMm10Link.txt.gz 2019-06-25 10:59 234M chainSynHg38.sql 2019-05-06 13:06 1.7K chainSynHg38.txt.gz 2019-05-06 13:06 562K chainSynHg38Link.sql 2019-05-06 13:06 1.5K chainSynHg38Link.txt.gz 2019-05-06 13:06 328M chainSynMm10.sql 2019-05-06 13:08 1.7K chainSynMm10.txt.gz 2019-05-06 13:08 259K chainSynMm10Link.sql 2019-05-06 13:08 1.5K chainSynMm10Link.txt.gz 2019-05-06 13:08 232M chromAlias.sql 2019-05-06 13:09 1.4K chromAlias.txt.gz 2019-05-06 13:09 52K chromInfo.sql 2019-05-06 13:09 1.4K chromInfo.txt.gz 2019-05-06 13:09 25K cpgIslandExt.sql 2019-05-06 13:03 1.7K cpgIslandExt.txt.gz 2019-05-06 13:03 1.3M cpgIslandExtUnmasked.sql 2019-05-06 13:06 1.7K cpgIslandExtUnmasked.txt.gz 2019-05-06 13:06 1.4M cytoBandIdeo.sql 2019-05-06 12:52 1.5K cytoBandIdeo.txt.gz 2019-05-06 12:52 24K ensGene.sql 2020-08-31 15:32 1.9K ensGene.txt.gz 2020-08-31 15:32 3.2M ensGtp.sql 2020-08-31 15:32 1.4K ensGtp.txt.gz 2020-08-31 15:32 547K ensPep.sql 2020-08-31 15:53 1.3K ensPep.txt.gz 2020-08-31 15:53 14M ensemblSource.sql 2020-08-31 15:53 1.4K ensemblSource.txt.gz 2020-08-31 15:53 173K ensemblToGeneName.sql 2020-08-31 15:32 1.4K ensemblToGeneName.txt.gz 2020-08-31 15:32 249K estOrientInfo.sql 2019-05-06 13:09 1.8K estOrientInfo.txt.gz 2019-05-06 13:09 16K extNcbiRefSeq.sql 2020-05-10 03:27 1.4K extNcbiRefSeq.txt.gz 2020-05-10 03:27 91 gap.sql 2019-05-06 13:09 1.6K gap.txt.gz 2019-05-06 13:09 5.9K gc5BaseBw.sql 2019-05-06 13:00 1.3K gc5BaseBw.txt.gz 2019-05-06 13:00 66 genscan.sql 2019-05-06 13:03 1.7K genscan.txt.gz 2019-05-06 13:03 3.3M gold.sql 2019-05-06 13:05 1.7K gold.txt.gz 2019-05-06 13:05 65K grp.sql 2019-05-06 13:06 1.3K grp.txt.gz 2019-05-06 13:06 213 hgFindSpec.sql 2020-12-06 07:59 1.7K hgFindSpec.txt.gz 2020-12-06 07:59 1.2K history.sql 2019-05-06 13:08 1.6K history.txt.gz 2019-05-06 13:08 934 intronEst.sql 2019-05-06 13:08 2.1K intronEst.txt.gz 2019-05-06 13:08 20K microsat.sql 2019-05-06 13:09 1.5K microsat.txt.gz 2019-05-06 13:09 1.0M mrnaOrientInfo.sql 2019-05-06 13:09 1.8K mrnaOrientInfo.txt.gz 2019-05-06 13:09 48K ncbiRefSeq.sql 2020-05-10 03:27 1.9K ncbiRefSeq.txt.gz 2020-05-10 03:27 3.7M ncbiRefSeqCds.sql 2020-05-10 03:27 1.3K ncbiRefSeqCds.txt.gz 2020-05-10 03:27 379K ncbiRefSeqCurated.sql 2020-05-10 03:27 2.0K ncbiRefSeqCurated.txt.gz 2020-05-10 03:27 35K ncbiRefSeqLink.sql 2020-05-10 03:27 2.0K ncbiRefSeqLink.txt.gz 2020-05-10 03:27 1.9M ncbiRefSeqOther.sql 2020-05-10 03:27 1.3K ncbiRefSeqOther.txt.gz 2020-05-10 03:27 75 ncbiRefSeqPepTable.sql 2020-05-10 03:27 1.4K ncbiRefSeqPepTable.txt.gz 2020-05-10 03:27 11M ncbiRefSeqPredicted.sql 2020-05-10 03:27 2.0K ncbiRefSeqPredicted.txt.gz 2020-05-10 03:27 3.6M ncbiRefSeqPsl.sql 2020-05-10 03:27 2.1K ncbiRefSeqPsl.txt.gz 2020-05-10 03:27 5.0M nestedRepeats.sql 2019-05-06 13:09 1.9K nestedRepeats.txt.gz 2019-05-06 13:09 15M netHg38.sql 2019-05-06 13:09 2.1K netHg38.txt.gz 2019-05-06 13:09 66M netMm10.sql 2019-05-06 13:10 2.1K netMm10.txt.gz 2019-05-06 13:10 62M netRBestHg38.sql 2019-06-25 11:00 2.1K netRBestHg38.txt.gz 2019-06-25 11:00 66M netRBestMm10.sql 2019-06-25 11:00 2.1K netRBestMm10.txt.gz 2019-06-25 11:00 62M netSynHg38.sql 2019-05-06 13:11 2.1K netSynHg38.txt.gz 2019-05-06 13:11 62M netSynMm10.sql 2019-05-06 13:11 2.1K netSynMm10.txt.gz 2019-05-06 13:11 60M refFlat.sql 2019-05-06 13:12 1.7K refFlat.txt.gz 2019-05-06 13:12 34K refGene.sql 2019-05-06 13:12 1.9K refGene.txt.gz 2019-05-06 13:12 36K refSeqAli.sql 2019-05-06 13:12 2.1K refSeqAli.txt.gz 2019-05-06 13:12 38K rmsk.sql 2019-05-06 13:12 1.9K rmsk.txt.gz 2019-05-06 13:12 129M seqNcbiRefSeq.sql 2020-05-10 03:27 1.5K seqNcbiRefSeq.txt.gz 2020-05-10 03:27 1.1M simpleRepeat.sql 2019-05-06 13:12 1.9K simpleRepeat.txt.gz 2019-05-06 13:12 24M tableDescriptions.sql 2021-01-14 06:34 1.4K tableDescriptions.txt.gz 2021-01-14 06:34 6.5K tableList.sql 2021-05-02 03:04 1.6K tableList.txt.gz 2021-05-02 03:04 3.9K tandemDups.sql 2019-05-06 13:12 1.8K tandemDups.txt.gz 2019-05-06 13:12 16M trackDb.sql 2020-12-06 07:59 2.0K trackDb.txt.gz 2020-12-06 07:59 45K ucscToINSDC.sql 2019-05-06 13:12 1.4K ucscToINSDC.txt.gz 2019-05-06 13:12 41K ucscToRefSeq.sql 2019-05-06 13:12 1.4K ucscToRefSeq.txt.gz 2019-05-06 13:12 37K windowmaskerSdust.sql 2019-05-06 13:12 1.5K windowmaskerSdust.txt.gz 2019-05-06 13:13 128M xenoMrna.sql 2019-05-06 13:13 2.1K xenoMrna.txt.gz 2019-05-06 13:13 225M xenoRefFlat.sql 2019-05-06 13:14 1.7K xenoRefFlat.txt.gz 2019-05-06 13:14 23M xenoRefGene.sql 2019-05-06 13:14 1.9K xenoRefGene.txt.gz 2019-05-06 13:14 25M xenoRefSeqAli.sql 2019-05-06 13:14 2.1K xenoRefSeqAli.txt.gz 2019-05-06 13:15 22M