This directory contains a dump of the UCSC genome annotation database for
the March 2006 assembly of the cat genome (felCat3, Broad Release 3).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Broad Institute at MIT and Harvard.
For more information on the cat genome, see the project website:
http://www.broad.mit.edu/mammals/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/felCat3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chainCanFam2Link.txt.gz 2007-01-19 16:41 522M
chainHg19Link.txt.gz 2009-09-20 09:22 341M
xenoMrna.txt.gz 2016-02-21 15:34 294M
chainMm8Link.txt.gz 2007-01-19 16:57 237M
chainCanFam2.txt.gz 2007-01-19 16:35 80M
rmsk.txt.gz 2007-01-19 17:09 77M
quality.txt.gz 2007-01-19 17:08 70M
multiz4way.txt.gz 2007-06-21 10:46 61M
netHg19.txt.gz 2009-09-20 09:24 55M
netCanFam2.txt.gz 2007-01-19 17:03 55M
phastCons4way.txt.gz 2007-06-21 10:48 49M
netMm8.txt.gz 2007-01-19 17:06 41M
xenoRefSeqAli.txt.gz 2020-08-21 19:00 37M
xenoRefGene.txt.gz 2020-08-21 18:41 36M
chainHg19.txt.gz 2009-09-20 09:24 35M
xenoRefFlat.txt.gz 2020-08-21 18:44 32M
chainMm8.txt.gz 2007-01-19 16:54 28M
gc5Base.txt.gz 2007-01-19 17:02 14M
gold.txt.gz 2007-01-19 17:02 11M
genscanPep.txt.gz 2007-01-19 17:02 8.6M
simpleRepeat.txt.gz 2007-01-19 17:10 8.6M
geneidPep.txt.gz 2007-02-15 09:38 7.7M
gap.txt.gz 2007-01-19 17:00 6.7M
multiz4wayFrames.txt.gz 2007-06-21 10:47 5.8M
genscanSubopt.txt.gz 2007-01-19 17:02 5.8M
geneid.txt.gz 2007-02-15 09:38 5.4M
ensPep.txt.gz 2012-10-21 03:37 4.0M
nscanPep.txt.gz 2007-03-14 11:24 4.0M
contigAcc.txt.gz 2007-01-19 17:00 4.0M
phastConsElements4way.txt.gz 2007-06-21 10:49 3.3M
genscan.txt.gz 2007-01-19 17:02 2.7M
blastHg18KG.txt.gz 2009-12-20 11:32 1.9M
ensGene.txt.gz 2012-10-21 03:37 1.7M
sgpGene.txt.gz 2007-12-22 12:46 1.7M
cpgIslandExtUnmasked.txt.gz 2014-06-01 12:51 1.5M
nscanGene.txt.gz 2007-03-14 11:24 1.5M
chromInfo.txt.gz 2007-01-19 17:00 1.1M
cpgIslandExt.txt.gz 2007-01-19 17:00 1.1M
ensemblGeneScaffold.txt.gz 2012-10-21 03:37 818K
microsat.txt.gz 2007-01-19 17:02 658K
all_mrna.txt.gz 2020-08-21 18:26 232K
ensGtp.txt.gz 2012-10-21 03:37 180K
ensemblToGeneName.txt.gz 2012-10-21 03:37 104K
tRNAs.txt.gz 2012-04-22 23:54 69K
ensemblSource.txt.gz 2012-10-21 03:37 68K
mrnaOrientInfo.txt.gz 2020-08-21 18:44 67K
refSeqAli.txt.gz 2020-08-21 18:45 44K
gbLoaded.txt.gz 2020-08-21 19:02 43K
all_est.txt.gz 2016-05-15 08:36 40K
trackDb.txt.gz 2023-03-28 13:49 39K
trackDb_pushedout.txt.gz 2021-12-27 12:20 39K
refGene.txt.gz 2020-08-21 18:40 35K
refFlat.txt.gz 2020-08-21 18:40 32K
multiz4waySummary.txt.gz 2007-06-21 10:47 23K
intronEst.txt.gz 2016-05-15 08:36 15K
estOrientInfo.txt.gz 2016-05-15 08:36 13K
tableDescriptions.txt.gz 2024-04-20 02:03 6.0K
tableList.txt.gz 2024-04-21 03:35 3.7K
netHg19.sql 2009-09-20 09:24 2.3K
blastHg18KG.sql 2009-12-20 11:32 2.3K
netCanFam2.sql 2007-01-19 17:02 2.2K
netMm8.sql 2007-01-19 17:05 2.2K
xenoRefSeqAli.sql 2020-08-21 19:00 2.1K
refSeqAli.sql 2020-08-21 18:45 2.1K
all_mrna.sql 2020-08-21 18:26 2.1K
intronEst.sql 2016-05-15 08:36 2.1K
xenoMrna.sql 2016-02-21 15:32 2.1K
all_est.sql 2016-05-15 08:36 2.1K
trackDb_pushedout.sql 2021-12-27 12:20 2.1K
trackDb.sql 2023-03-28 13:49 2.1K
nscanGene.sql 2007-03-14 11:24 2.0K
simpleRepeat.sql 2007-01-19 17:10 2.0K
xenoRefGene.sql 2020-08-21 18:41 2.0K
refGene.sql 2020-08-21 18:40 1.9K
sgpGene.sql 2007-12-22 12:46 1.9K
ensGene.sql 2012-10-21 03:37 1.9K
geneid.sql 2007-02-15 09:38 1.9K
rmsk.sql 2007-01-19 17:08 1.9K
mrnaOrientInfo.sql 2020-08-21 18:44 1.8K
hgFindSpec_pushedout.sql 2021-12-27 12:20 1.8K
chainHg19.sql 2009-09-20 09:24 1.8K
estOrientInfo.sql 2016-05-15 08:36 1.8K
hgFindSpec.sql 2023-03-28 13:49 1.8K
xenoRefFlat.sql 2020-08-21 18:44 1.7K
phastCons4way.sql 2007-06-21 10:47 1.7K
refFlat.sql 2020-08-21 18:40 1.7K
quality.sql 2007-01-19 17:06 1.7K
gc5Base.sql 2007-01-19 17:01 1.7K
cpgIslandExtUnmasked.sql 2014-06-01 12:51 1.7K
tRNAs.sql 2012-04-22 23:54 1.7K
ensemblGeneScaffold.sql 2012-10-21 03:37 1.7K
chainCanFam2.sql 2007-01-19 16:34 1.7K
chainMm8.sql 2007-01-19 16:54 1.6K
cpgIslandExt.sql 2007-01-19 17:00 1.6K
gbLoaded.sql 2020-08-21 19:02 1.6K
gold.sql 2007-01-19 17:02 1.6K
tableList.sql 2024-04-21 03:35 1.6K
genscan.sql 2007-01-19 17:02 1.6K
multiz4wayFrames.sql 2007-06-21 10:46 1.6K
history.sql 2010-07-04 15:39 1.6K
chainHg19Link.sql 2009-09-20 09:21 1.5K
gap.sql 2007-01-19 17:00 1.5K
multiz4waySummary.sql 2007-06-21 10:47 1.5K
tableDescriptions.sql 2024-04-20 02:03 1.5K
genscanSubopt.sql 2007-01-19 17:02 1.5K
phastConsElements4way.sql 2007-06-21 10:48 1.4K
ensGtp.sql 2012-10-21 03:37 1.4K
chainCanFam2Link.sql 2007-01-19 16:35 1.4K
multiz4way.sql 2007-06-21 10:45 1.4K
chainMm8Link.sql 2007-01-19 16:55 1.4K
bigFiles.sql 2024-04-21 03:35 1.4K
ensemblToGeneName.sql 2012-10-21 03:37 1.4K
grp.sql 2014-03-02 03:40 1.4K
ensemblSource.sql 2012-10-21 03:37 1.4K
microsat.sql 2007-01-19 17:02 1.3K
ensPep.sql 2012-10-21 03:37 1.3K
extFile.sql 2007-06-21 10:45 1.3K
chromInfo.sql 2007-01-19 17:00 1.2K
contigAcc.sql 2007-01-19 17:00 1.2K
genscanPep.sql 2007-01-19 17:02 1.2K
geneidPep.sql 2007-02-15 09:38 1.1K
nscanPep.sql 2007-03-14 11:24 1.1K
hgFindSpec.txt.gz 2023-03-28 13:49 1.0K
hgFindSpec_pushedout.txt.gz 2021-12-27 12:20 1.0K
history.txt.gz 2010-07-04 15:39 530
grp.txt.gz 2014-03-02 03:40 208
extFile.txt.gz 2007-06-21 10:45 83
bigFiles.txt.gz 2024-04-21 03:35 33