This directory contains the Drosophila virilis 1 August 2005 assembly from Agencourt. The annotations are from UCSC and collaborators worldwide. If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/droVir2/bigZips. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) ------------------------------------------------------------ droVir2.2bit - contains the complete D. virilis/droVir2 genome sequence in the 2bit file format. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are shown in lower case; non-repeating sequence is shown in upper case. The utility program, twoBitToFa (available from the kent src tree), can be used to extract .fa file(s) from this file. A pre-compiled version of the command line tool can be found at: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ See also: http://genome.ucsc.edu/admin/git.html http://genome.ucsc.edu/admin/jk-install.html est.fa.gz - D. virilis ESTs in GenBank. This sequence data is updated once a week via automatic GenBank updates. md5sum.txt - MD5 checksum of these files to verify correct transmission. mrna.fa.gz - D. virilis mRNA from GenBank. This sequence data is updated once a week via automatic GenBank updates. refMrna.fa.gz - RefSeq mRNA from the same species as the genome. This sequence data is updated once a week via automatic GenBank updates. scaffoldFa.gz - The working draft sequence in one FASTA record per scaffold. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are in lower case while non-repeating sequence is in upper case. scaffoldFaMasked.gz - The working draft sequence in one FASTA record per scaffold. Repeats are masked by capital N's and non-repeating sequence is shown in upper case. scaffoldOut.gz - RepeatMasker .out file for scaffolds. These were created with RepeatMasker at the -s sensitive setting. scaffoldTrf.gz - Tandem Repeats Finder locations, filtered to keep repeats with period less than or equal to 12, translated into one .bed file. xenoMrna.fa.gz - GenBank mRNAs from species other than that of the genome. This sequence data is updated once a week via automatic GenBank updates.
Name Last modified Size Description
Parent Directory - droVir2.2bit 2005-08-11 22:42 52M droVir2.chrom.sizes 2005-08-11 22:42 253K droVir2.fa.gz 2020-01-23 02:21 55M est.fa.gz 2019-10-15 17:57 6.0M est.fa.gz.md5 2019-10-15 17:57 44 md5sum.txt 2014-02-03 11:48 247 mrna.fa.gz 2019-10-15 17:53 54K mrna.fa.gz.md5 2019-10-15 17:53 45 refMrna.fa.gz 2019-10-15 17:58 20 refMrna.fa.gz.md5 2019-10-15 17:58 48 scaffoldFa.gz 2005-08-11 22:51 55M scaffoldFaMasked.gz 2005-08-11 22:52 47M scaffoldOut.gz 2005-08-11 22:51 5.9M scaffoldTrf.gz 2005-08-11 22:52 1.2M xenoMrna.fa.gz 2016-03-19 06:33 5.0G xenoMrna.fa.gz.md5 2016-03-19 06:33 49 xenoRefMrna.fa.gz 2019-10-15 17:58 331M xenoRefMrna.fa.gz.md5 2019-10-15 17:58 52