This directory contains the Drosophila pseudoobscura Flybase
Release 1.0 assembly (Nov. 2004).
The annotations are from UCSC, Flybase and collaborators worldwide.
Files are updated nightly. The .txt.gz files contain the
database tables in a tab-delimited format compressed with gzip.
The .sql files contain the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=dp3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/dp3/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely usable for any
purpose.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-04-28 03:28 33
bigFiles.sql 2024-04-28 03:28 1.4K
tableList.txt.gz 2024-04-28 03:28 8.1K
tableList.sql 2024-04-28 03:28 1.6K
tableDescriptions.txt.gz 2024-04-27 02:03 4.7K
tableDescriptions.sql 2024-04-27 02:03 1.5K
hgFindSpec.txt.gz 2023-03-28 13:48 1.0K
hgFindSpec.sql 2023-03-28 13:48 1.8K
trackDb.txt.gz 2023-03-28 13:48 21K
trackDb.sql 2023-03-28 13:48 2.1K
hgFindSpec_pushedout.txt.gz 2021-08-02 14:24 940
hgFindSpec_pushedout.sql 2021-08-02 14:24 1.8K
trackDb_pushedout.txt.gz 2021-08-02 14:24 18K
trackDb_pushedout.sql 2021-08-02 14:24 2.1K
gbLoaded.txt.gz 2020-08-19 00:44 43K
gbLoaded.sql 2020-08-19 00:44 1.6K
xenoRefSeqAli.txt.gz 2020-08-19 00:44 7.1M
xenoRefSeqAli.sql 2020-08-19 00:44 2.1K
xenoRefFlat.txt.gz 2020-08-19 00:44 7.1M
xenoRefFlat.sql 2020-08-19 00:44 1.7K
xenoRefGene.txt.gz 2020-08-19 00:44 7.8M
xenoRefGene.sql 2020-08-19 00:44 1.9K
mrnaOrientInfo.txt.gz 2017-10-22 06:27 2.2K
mrnaOrientInfo.sql 2017-10-22 06:27 1.8K
chr3_mrna.txt.gz 2017-10-22 06:27 816
chr3_mrna.sql 2017-10-22 06:27 2.1K
all_mrna.txt.gz 2017-10-22 06:27 8.1K
all_mrna.sql 2017-10-22 06:27 2.1K
chrXR_group6_mrna.txt.gz 2016-09-18 07:51 620
chrXR_group6_mrna.sql 2016-09-18 07:51 2.1K
chrXL_group1a_mrna.txt.gz 2016-09-18 07:51 943
chrXL_group1a_mrna.sql 2016-09-18 07:51 2.1K
chr4_group3_mrna.txt.gz 2016-09-18 07:51 707
chr4_group3_mrna.sql 2016-09-18 07:51 2.1K
chr2_mrna.txt.gz 2016-09-18 07:51 1.4K
chr2_mrna.sql 2016-09-18 07:51 2.1K
chrXL_group3a_est.txt.gz 2016-06-05 10:02 28K
chrXL_group3a_est.sql 2016-06-05 10:02 2.1K
chrXL_group1e_est.txt.gz 2016-06-05 10:02 189K
chrXL_group1e_est.sql 2016-06-05 10:02 2.1K
chrU_est.txt.gz 2016-06-05 10:02 102K
chrU_est.sql 2016-06-05 10:02 2.1K
chr4_group3_est.txt.gz 2016-06-05 10:02 156K
chr4_group3_est.sql 2016-06-05 10:02 2.1K
all_est.txt.gz 2016-06-05 10:02 2.1M
chr4_group3_intronEst.txt.gz 2016-06-05 10:02 98K
chr4_group3_intronEst.sql 2016-06-05 10:02 2.1K
all_est.sql 2016-06-05 10:02 2.1K
estOrientInfo.txt.gz 2016-06-05 10:02 362K
estOrientInfo.sql 2016-06-05 10:02 1.8K
chrXR_group9_est.txt.gz 2016-06-05 10:02 91K
chrXR_group9_est.sql 2016-06-05 10:02 2.1K
chrXR_group8_mrna.txt.gz 2016-06-05 10:02 2.0K
chrXR_group8_mrna.sql 2016-06-05 10:02 2.1K
chrXR_group8_intronEst.txt.gz 2016-06-05 10:02 92K
chrXR_group8_intronEst.sql 2016-06-05 10:02 2.1K
chrXR_group8_est.txt.gz 2016-06-05 10:02 144K
chrXR_group8_est.sql 2016-06-05 10:02 2.1K
chrXR_group6_est.txt.gz 2016-06-05 10:02 90K
chrXR_group6_est.sql 2016-06-05 10:02 2.1K
chrXL_group1e_intronEst.txt.gz 2016-06-05 10:02 122K
chrXL_group1e_intronEst.sql 2016-06-05 10:02 2.1K
chrXL_group1a_est.txt.gz 2016-06-05 10:02 138K
chrXL_group1a_est.sql 2016-06-05 10:02 2.1K
chr4_group4_est.txt.gz 2016-06-05 10:02 93K
chr4_group4_est.sql 2016-06-05 10:02 2.1K
chr4_group2_est.txt.gz 2016-06-05 10:02 15K
chr4_group2_est.sql 2016-06-05 10:02 2.1K
chr4_group1_intronEst.txt.gz 2016-06-05 10:02 36K
chr4_group1_intronEst.sql 2016-06-05 10:02 2.1K
chr4_group1_est.txt.gz 2016-06-05 10:02 59K
chr4_group1_est.sql 2016-06-05 10:02 2.1K
chr3_intronEst.txt.gz 2016-06-05 10:02 245K
chr3_intronEst.sql 2016-06-05 10:02 2.1K
chr3_est.txt.gz 2016-06-05 10:02 383K
chr3_est.sql 2016-06-05 10:02 2.1K
chr2_intronEst.txt.gz 2016-06-05 10:02 370K
chr2_est.txt.gz 2016-06-05 10:02 566K
chr2_est.sql 2016-06-05 10:02 2.1K
chrU_intronEst.txt.gz 2016-06-05 10:02 40K
chrU_intronEst.sql 2016-06-05 10:02 2.1K
chr2_intronEst.sql 2016-06-05 10:02 2.1K
chrXR_group9_mrna.txt.gz 2016-05-15 08:25 250
chrXR_group9_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group9_intronEst.txt.gz 2016-05-15 08:25 55K
chrXR_group9_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group6_intronEst.txt.gz 2016-05-15 08:25 60K
chrXR_group6_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group5_mrna.txt.gz 2016-05-15 08:25 42
chrXR_group5_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group5_intronEst.txt.gz 2016-05-15 08:25 8.0K
chrXR_group5_intronEst.sql 2016-05-15 08:25 2.1K
chrXR_group3a_mrna.txt.gz 2016-05-15 08:25 107
chrXR_group3a_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group3a_intronEst.txt.gz 2016-05-15 08:25 30K
chrXR_group3a_intronEst.sql 2016-05-15 08:25 2.1K
chrXL_group1e_mrna.txt.gz 2016-05-15 08:25 701
chrXL_group1e_mrna.sql 2016-05-15 08:25 2.1K
chrXR_group5_est.txt.gz 2016-05-15 08:25 13K
chrXR_group5_est.sql 2016-05-15 08:25 2.1K
chrXR_group3a_est.txt.gz 2016-05-15 08:25 44K
chrXR_group3a_est.sql 2016-05-15 08:25 2.1K
chrXL_group3b_mrna.txt.gz 2016-05-15 08:25 150
chrXL_group3b_mrna.sql 2016-05-15 08:25 2.1K
chrXL_group3b_intronEst.txt.gz 2016-05-15 08:25 1.5K
chrXL_group3b_intronEst.sql 2016-05-15 08:25 2.1K
chrXL_group3b_est.txt.gz 2016-05-15 08:25 3.5K
chrXL_group3b_est.sql 2016-05-15 08:25 2.1K
chrXL_group3a_mrna.txt.gz 2016-05-15 08:25 155
chrXL_group3a_mrna.sql 2016-05-15 08:25 2.1K
chrXL_group3a_intronEst.txt.gz 2016-05-15 08:25 21K
chrXL_group3a_intronEst.sql 2016-05-15 08:25 2.1K
chrXL_group1a_intronEst.txt.gz 2016-05-15 08:25 89K
chrXL_group1a_intronEst.sql 2016-05-15 08:25 2.1K
chr4_group5_mrna.txt.gz 2016-05-15 08:25 41
chr4_group5_mrna.sql 2016-05-15 08:25 2.1K
chr4_group5_intronEst.txt.gz 2016-05-15 08:25 23K
chr4_group5_intronEst.sql 2016-05-15 08:25 2.1K
chr4_group5_est.txt.gz 2016-05-15 08:25 39K
chr4_group5_est.sql 2016-05-15 08:25 2.1K
chr4_group4_mrna.txt.gz 2016-05-15 08:25 221
chr4_group4_mrna.sql 2016-05-15 08:25 2.1K
chr4_group2_mrna.txt.gz 2016-05-15 08:25 41
chr4_group2_mrna.sql 2016-05-15 08:25 2.1K
chr4_group2_intronEst.txt.gz 2016-05-15 08:25 7.4K
chr4_group2_intronEst.sql 2016-05-15 08:25 2.1K
chrU_mrna.txt.gz 2016-05-15 08:25 681
chrU_mrna.sql 2016-05-15 08:25 2.1K
chr4_group4_intronEst.txt.gz 2016-05-15 08:25 66K
chr4_group4_intronEst.sql 2016-05-15 08:25 2.1K
chr4_group1_mrna.txt.gz 2016-05-15 08:25 215
chr4_group1_mrna.sql 2016-05-15 08:25 2.1K
xenoMrna.txt.gz 2016-02-21 13:54 89M
xenoMrna.sql 2016-02-21 13:53 2.1K
microsat.txt.gz 2015-08-23 14:22 8.7K
microsat.sql 2015-08-23 14:22 1.5K
augustusGene.txt.gz 2015-07-26 12:19 770K
augustusGene.sql 2015-07-26 12:19 1.9K
grp.txt.gz 2014-03-02 03:40 223
grp.sql 2014-03-02 03:40 1.4K
twinscan.sql 2013-10-01 12:48 746
simpleRepeat.sql 2013-10-01 12:48 1.1K
history.sql 2013-10-01 12:48 533
genscanPep.sql 2013-10-01 12:48 326
genscan.sql 2013-10-01 12:48 744
genewise.sql 2013-10-01 12:48 746
geneid.sql 2013-10-01 12:48 1.0K
gcPercent.sql 2013-10-01 12:48 506
gbDelete_tmp.sql 2013-10-01 12:48 322
flyBasePep.sql 2013-10-01 12:48 326
flyBaseGene.sql 2013-10-01 12:48 752
flyBase2004Xref.sql 2013-10-01 12:48 730
fbGenscan.sql 2013-10-01 12:48 1.0K
chromInfo.sql 2013-10-01 12:48 392
chrXR_group9_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group9_gap.sql 2013-10-01 12:48 716
chrXR_group8_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group8_gap.sql 2013-10-01 12:48 716
chrXR_group6_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group6_gap.sql 2013-10-01 12:48 716
chrXR_group5_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group5_gap.sql 2013-10-01 12:48 716
chrXR_group3a_rmsk.sql 2013-10-01 12:48 1.1K
chrXR_group3a_gap.sql 2013-10-01 12:48 718
chrXL_group3b_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group3b_gap.sql 2013-10-01 12:48 718
chrXL_group3a_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group3a_gap.sql 2013-10-01 12:48 718
chrXL_group1e_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group1e_gap.sql 2013-10-01 12:48 718
chrXL_group1a_rmsk.sql 2013-10-01 12:48 1.1K
chrXL_group1a_gap.sql 2013-10-01 12:48 718
chrU_rmsk.sql 2013-10-01 12:48 1.0K
chrU_gap.sql 2013-10-01 12:48 700
chr4_group5_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group5_gap.sql 2013-10-01 12:48 714
chr4_group4_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group4_gap.sql 2013-10-01 12:48 714
chr4_group3_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group3_gap.sql 2013-10-01 12:48 714
chr4_group2_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group2_gap.sql 2013-10-01 12:48 714
chr4_group1_rmsk.sql 2013-10-01 12:48 1.1K
chr4_group1_gap.sql 2013-10-01 12:48 714
chr3_rmsk.sql 2013-10-01 12:48 1.0K
chr3_gap.sql 2013-10-01 12:48 700
chr2_rmsk.sql 2013-10-01 12:48 1.0K
chr2_gap.sql 2013-10-01 12:48 700
blastDm2FB.sql 2013-10-01 12:48 1.3K
chrXR_group9_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M
chrXR_group9_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group9_chainDm3.txt.gz 2007-07-14 10:31 199K
chrXR_group9_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group8_chainDm3Link.txt.gz 2007-07-14 10:31 3.0M
chrXR_group8_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group8_chainDm3.txt.gz 2007-07-14 10:31 292K
chrXR_group8_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group6_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M
chrXR_group6_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group6_chainDm3.txt.gz 2007-07-14 10:31 270K
chrXR_group6_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group5_chainDm3Link.txt.gz 2007-07-14 10:31 246K
chrXR_group5_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group5_chainDm3.txt.gz 2007-07-14 10:31 19K
chrXR_group5_chainDm3.sql 2007-07-14 10:31 1.7K
chrXR_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 514K
chrXR_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXR_group3a_chainDm3.txt.gz 2007-07-14 10:31 52K
chrXR_group3a_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group3b_chainDm3Link.txt.gz 2007-07-14 10:31 146K
chrXL_group3b_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group3b_chainDm3.txt.gz 2007-07-14 10:31 18K
chrXL_group3b_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 859K
chrXL_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group3a_chainDm3.txt.gz 2007-07-14 10:31 92K
chrXL_group3a_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group1e_chainDm3Link.txt.gz 2007-07-14 10:31 4.0M
chrXL_group1e_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group1e_chainDm3.txt.gz 2007-07-14 10:31 557K
chrXL_group1e_chainDm3.sql 2007-07-14 10:31 1.7K
chrXL_group1a_chainDm3Link.txt.gz 2007-07-14 10:31 3.1M
chrXL_group1a_chainDm3Link.sql 2007-07-14 10:31 1.4K
chrXL_group1a_chainDm3.txt.gz 2007-07-14 10:31 375K
chrXL_group1a_chainDm3.sql 2007-07-14 10:31 1.7K
chrU_chainDm3Link.txt.gz 2007-07-14 10:31 14M
chrU_chainDm3Link.sql 2007-07-14 10:30 1.4K
chrU_chainDm3.txt.gz 2007-07-14 10:30 2.0M
chrU_chainDm3.sql 2007-07-14 10:30 1.6K
chr4_group5_chainDm3Link.txt.gz 2007-07-14 10:30 713K
chr4_group5_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group5_chainDm3.txt.gz 2007-07-14 10:30 77K
chr4_group5_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group4_chainDm3Link.txt.gz 2007-07-14 10:30 1.9M
chr4_group4_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group4_chainDm3.txt.gz 2007-07-14 10:30 176K
chr4_group4_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group3_chainDm3Link.txt.gz 2007-07-14 10:30 4.1M
chr4_group3_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group3_chainDm3.txt.gz 2007-07-14 10:30 609K
chr4_group3_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group2_chainDm3Link.txt.gz 2007-07-14 10:30 514K
chr4_group2_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group2_chainDm3.txt.gz 2007-07-14 10:30 63K
chr4_group2_chainDm3.sql 2007-07-14 10:30 1.7K
chr4_group1_chainDm3Link.txt.gz 2007-07-14 10:30 1.4M
chr4_group1_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr4_group1_chainDm3.txt.gz 2007-07-14 10:30 119K
chr4_group1_chainDm3.sql 2007-07-14 10:30 1.7K
chr3_chainDm3Link.txt.gz 2007-07-14 10:30 6.6M
chr3_chainDm3Link.sql 2007-07-14 10:30 1.4K
chr3_chainDm3.txt.gz 2007-07-14 10:30 606K
chr3_chainDm3.sql 2007-07-14 10:30 1.6K
netDm3.txt.gz 2007-07-14 10:30 7.6M
netDm3.sql 2007-07-14 10:30 2.2K
chr2_chainDm3Link.txt.gz 2007-07-14 10:30 10M
chr2_chainDm3Link.sql 2007-07-14 10:29 1.4K
chr2_chainDm3.txt.gz 2007-07-14 10:29 853K
chr2_chainDm3.sql 2007-07-14 10:29 1.6K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
geneid.txt.gz 2005-09-23 04:49 723K
blastDm2FB.txt.gz 2005-07-28 05:23 1.4M
twinscan.txt.gz 2005-06-24 12:22 622K
simpleRepeat.txt.gz 2005-06-24 12:22 1.4M
history.txt.gz 2005-06-24 12:21 470
genscanPep.txt.gz 2005-06-24 12:21 4.7M
genscan.txt.gz 2005-06-24 12:21 716K
genewise.txt.gz 2005-06-24 12:21 546K
gcPercent.txt.gz 2005-06-24 12:21 40K
flyBasePep.txt.gz 2005-06-24 12:20 2.9M
flyBaseGene.txt.gz 2005-06-24 12:20 402K
flyBase2004Xref.txt.gz 2005-06-24 12:20 97K
fbGenscan.txt.gz 2005-06-24 12:20 868K
chrXR_group9_rmsk.txt.gz 2005-06-24 12:20 148K
chrXR_group9_gap.txt.gz 2005-06-24 12:20 4.1K
chrXR_group8_rmsk.txt.gz 2005-06-24 12:20 198K
chromInfo.txt.gz 2005-06-24 12:20 209
chrXR_group8_gap.txt.gz 2005-06-24 12:20 5.2K
chrXR_group6_rmsk.txt.gz 2005-06-24 12:20 136K
chrXR_group6_gap.txt.gz 2005-06-24 12:20 3.4K
chrXR_group5_rmsk.txt.gz 2005-06-24 12:19 16K
chrXR_group5_gap.txt.gz 2005-06-24 12:19 488
chrXR_group3a_rmsk.txt.gz 2005-06-24 12:19 32K
chrXR_group3a_gap.txt.gz 2005-06-24 12:19 1.0K
chrXL_group3b_rmsk.txt.gz 2005-06-24 12:19 9.2K
chrXL_group3b_gap.txt.gz 2005-06-24 12:19 417
chrXL_group3a_rmsk.txt.gz 2005-06-24 12:19 50K
chrXL_group3a_gap.txt.gz 2005-06-24 12:19 1.9K
chrXL_group1e_rmsk.txt.gz 2005-06-24 12:19 261K
chrXL_group1e_gap.txt.gz 2005-06-24 12:19 7.0K
chrXL_group1a_rmsk.txt.gz 2005-06-24 12:19 195K
chrXL_group1a_gap.txt.gz 2005-06-24 12:19 5.7K
chrU_rmsk.txt.gz 2005-06-24 12:19 298K
chrU_gap.txt.gz 2005-06-24 12:19 14K
chr4_group5_rmsk.txt.gz 2005-06-24 12:19 38K
chr4_group5_gap.txt.gz 2005-06-24 12:19 861
chr4_group4_rmsk.txt.gz 2005-06-24 12:19 92K
chr4_group4_gap.txt.gz 2005-06-24 12:19 3.3K
chr4_group3_rmsk.txt.gz 2005-06-24 12:19 179K
chr4_group3_gap.txt.gz 2005-06-24 12:19 4.6K
chr4_group2_rmsk.txt.gz 2005-06-24 12:19 19K
chr4_group2_gap.txt.gz 2005-06-24 12:19 805
chr4_group1_rmsk.txt.gz 2005-06-24 12:19 89K
chr4_group1_gap.txt.gz 2005-06-24 12:19 2.4K
chr3_rmsk.txt.gz 2005-06-24 12:19 258K
chr3_gap.txt.gz 2005-06-24 12:19 6.9K
chr2_rmsk.txt.gz 2005-06-24 12:19 472K
chr2_gap.txt.gz 2005-06-24 12:19 11K