This directory contains a dump of the UCSC genome annotation
database for the Apr. 2002 freeze of the SARS draft genome
assembly, based on sequence deposited into GenBank as of
14 April 2003. The files are updated nightly.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=sc1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/scApr2003/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely usable for any purpose
except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
Name Last modified Size Description
Parent Directory -
gbCdnaInfo.txt.gz 2004-09-28 17:12 3.5M
seq.txt.gz 2003-05-23 14:45 3.2M
description.txt.gz 2003-05-23 14:45 2.7M
author.txt.gz 2003-05-23 14:45 710K
source.txt.gz 2003-05-23 14:45 276K
cds.txt.gz 2003-05-23 14:45 263K
mrnaClone.txt.gz 2003-05-23 14:45 262K
organism.txt.gz 2003-05-23 14:45 208K
productName.txt.gz 2003-05-23 14:45 171K
keyword.txt.gz 2003-05-23 14:45 132K
xenoMrna.txt.gz 2003-05-23 14:45 80K
all_mrna.txt.gz 2003-05-23 14:45 80K
geneName.txt.gz 2003-05-23 14:45 62K
xenoBlastzMrna.txt.gz 2003-05-23 14:45 27K
library.txt.gz 2003-05-23 14:45 14K
tissue.txt.gz 2003-05-23 14:45 8.9K
development.txt.gz 2003-05-23 14:45 8.2K
cell.txt.gz 2003-05-23 14:45 6.8K
softberryPep.txt.gz 2003-05-23 14:45 5.6K
protHomolog.txt.gz 2003-06-20 08:40 5.4K
trackDb.txt.gz 2007-03-08 07:54 4.0K
tableDescriptions.txt.gz 2008-05-18 03:16 3.8K
chr1_viralProt.txt.gz 2003-05-23 14:45 2.1K
trackDb.sql 2007-03-08 07:54 2.0K
gbCdnaInfo.sql 2013-10-01 12:48 1.5K
pslTable.sql 2013-10-01 12:48 1.5K
xenoBlastzMrna.sql 2013-10-01 12:48 1.3K
chr1_viralProt.sql 2013-10-01 12:48 1.3K
otherSARS.sql 2013-10-01 12:48 1.3K
xenoMrna.sql 2013-10-01 12:48 1.3K
all_mrna.sql 2013-10-01 12:48 1.3K
tableDescriptions.sql 2008-05-18 03:16 1.2K
otherSARS.txt.gz 2003-05-23 14:45 1.0K
hgFindSpec.sql 2013-10-01 12:48 825
softberryGene.sql 2013-10-01 12:48 752
gbProtAnn.txt.gz 2003-05-23 14:45 704
gbProtAnn.sql 2013-10-01 12:48 650
protHomolog.sql 2013-10-01 12:48 619
seq.sql 2013-10-01 12:48 594
gcPercent.sql 2013-10-01 12:48 544
history.sql 2013-10-01 12:48 533
extFile.sql 2013-10-01 12:48 440
chromInfo.sql 2013-10-01 12:48 394
softberryHom.sql 2013-10-01 12:48 381
grp.sql 2013-10-01 12:48 358
protPredFile.sql 2013-10-01 12:48 355
productName.sql 2013-10-01 12:48 342
development.sql 2013-10-01 12:48 342
description.sql 2013-10-01 12:48 342
mrnaClone.sql 2013-10-01 12:48 338
organism.sql 2013-10-01 12:48 336
geneName.sql 2013-10-01 12:48 336
library.sql 2013-10-01 12:48 334
keyword.sql 2013-10-01 12:48 334
tissue.sql 2013-10-01 12:48 332
source.sql 2013-10-01 12:48 332
softberryPep.sql 2013-10-01 12:48 332
author.sql 2013-10-01 12:48 332
cell.sql 2013-10-01 12:48 328
sex.sql 2013-10-01 12:48 326
cds.sql 2013-10-01 12:48 326
history.txt.gz 2005-07-14 05:11 278
hgFindSpec.txt.gz 2005-04-24 05:36 266
softberryHom.txt.gz 2003-05-23 14:45 260
protPredFile.txt.gz 2003-06-20 08:40 238
softberryGene.txt.gz 2003-05-23 14:45 223
grp.txt.gz 2004-10-22 04:25 204
sex.txt.gz 2003-05-23 14:45 203
extFile.txt.gz 2003-05-23 14:45 143
pslTable.txt.gz 2003-05-23 14:45 92
gcPercent.txt.gz 2003-05-23 14:45 67
chromInfo.txt.gz 2003-05-23 14:45 65