This directory contains a dump of the UCSC genome annotation
database for the Apr. 2002 freeze of the SARS draft genome
assembly, based on sequence deposited into GenBank as of
14 April 2003. The files are updated nightly.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=sc1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/scApr2003/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely usable for any purpose
except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
Name Last modified Size Description
Parent Directory -
chromInfo.txt.gz 2003-05-23 14:45 65
gcPercent.txt.gz 2003-05-23 14:45 67
pslTable.txt.gz 2003-05-23 14:45 92
extFile.txt.gz 2003-05-23 14:45 143
sex.txt.gz 2003-05-23 14:45 203
grp.txt.gz 2004-10-22 04:25 204
softberryGene.txt.gz 2003-05-23 14:45 223
protPredFile.txt.gz 2003-06-20 08:40 238
softberryHom.txt.gz 2003-05-23 14:45 260
hgFindSpec.txt.gz 2005-04-24 05:36 266
history.txt.gz 2005-07-14 05:11 278
cds.sql 2013-10-01 12:48 326
sex.sql 2013-10-01 12:48 326
cell.sql 2013-10-01 12:48 328
author.sql 2013-10-01 12:48 332
softberryPep.sql 2013-10-01 12:48 332
source.sql 2013-10-01 12:48 332
tissue.sql 2013-10-01 12:48 332
keyword.sql 2013-10-01 12:48 334
library.sql 2013-10-01 12:48 334
geneName.sql 2013-10-01 12:48 336
organism.sql 2013-10-01 12:48 336
mrnaClone.sql 2013-10-01 12:48 338
description.sql 2013-10-01 12:48 342
development.sql 2013-10-01 12:48 342
productName.sql 2013-10-01 12:48 342
protPredFile.sql 2013-10-01 12:48 355
grp.sql 2013-10-01 12:48 358
softberryHom.sql 2013-10-01 12:48 381
chromInfo.sql 2013-10-01 12:48 394
extFile.sql 2013-10-01 12:48 440
history.sql 2013-10-01 12:48 533
gcPercent.sql 2013-10-01 12:48 544
seq.sql 2013-10-01 12:48 594
protHomolog.sql 2013-10-01 12:48 619
gbProtAnn.sql 2013-10-01 12:48 650
gbProtAnn.txt.gz 2003-05-23 14:45 704
softberryGene.sql 2013-10-01 12:48 752
hgFindSpec.sql 2013-10-01 12:48 825
otherSARS.txt.gz 2003-05-23 14:45 1.0K
tableDescriptions.sql 2008-05-18 03:16 1.2K
all_mrna.sql 2013-10-01 12:48 1.3K
xenoMrna.sql 2013-10-01 12:48 1.3K
otherSARS.sql 2013-10-01 12:48 1.3K
chr1_viralProt.sql 2013-10-01 12:48 1.3K
xenoBlastzMrna.sql 2013-10-01 12:48 1.3K
pslTable.sql 2013-10-01 12:48 1.5K
gbCdnaInfo.sql 2013-10-01 12:48 1.5K
trackDb.sql 2007-03-08 07:54 2.0K
chr1_viralProt.txt.gz 2003-05-23 14:45 2.1K
tableDescriptions.txt.gz 2008-05-18 03:16 3.8K
trackDb.txt.gz 2007-03-08 07:54 4.0K
protHomolog.txt.gz 2003-06-20 08:40 5.4K
softberryPep.txt.gz 2003-05-23 14:45 5.6K
cell.txt.gz 2003-05-23 14:45 6.8K
development.txt.gz 2003-05-23 14:45 8.2K
tissue.txt.gz 2003-05-23 14:45 8.9K
library.txt.gz 2003-05-23 14:45 14K
xenoBlastzMrna.txt.gz 2003-05-23 14:45 27K
geneName.txt.gz 2003-05-23 14:45 62K
all_mrna.txt.gz 2003-05-23 14:45 80K
xenoMrna.txt.gz 2003-05-23 14:45 80K
keyword.txt.gz 2003-05-23 14:45 132K
productName.txt.gz 2003-05-23 14:45 171K
organism.txt.gz 2003-05-23 14:45 208K
mrnaClone.txt.gz 2003-05-23 14:45 262K
cds.txt.gz 2003-05-23 14:45 263K
source.txt.gz 2003-05-23 14:45 276K
author.txt.gz 2003-05-23 14:45 710K
description.txt.gz 2003-05-23 14:45 2.7M
seq.txt.gz 2003-05-23 14:45 3.2M
gbCdnaInfo.txt.gz 2004-09-28 17:12 3.5M