This directory contains a dump of the UCSC genome annotation
database for the Apr. 2002 freeze of the SARS draft genome
assembly, based on sequence deposited into GenBank as of
14 April 2003. The files are updated nightly.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=sc1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/scApr2003/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely usable for any purpose
except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
Name Last modified Size Description
Parent Directory -
all_mrna.txt.gz 2003-05-23 14:45 80K
author.txt.gz 2003-05-23 14:45 710K
cds.txt.gz 2003-05-23 14:45 263K
cell.txt.gz 2003-05-23 14:45 6.8K
chr1_viralProt.txt.gz 2003-05-23 14:45 2.1K
chromInfo.txt.gz 2003-05-23 14:45 65
description.txt.gz 2003-05-23 14:45 2.7M
development.txt.gz 2003-05-23 14:45 8.2K
extFile.txt.gz 2003-05-23 14:45 143
gbProtAnn.txt.gz 2003-05-23 14:45 704
gcPercent.txt.gz 2003-05-23 14:45 67
geneName.txt.gz 2003-05-23 14:45 62K
keyword.txt.gz 2003-05-23 14:45 132K
library.txt.gz 2003-05-23 14:45 14K
mrnaClone.txt.gz 2003-05-23 14:45 262K
organism.txt.gz 2003-05-23 14:45 208K
otherSARS.txt.gz 2003-05-23 14:45 1.0K
productName.txt.gz 2003-05-23 14:45 171K
pslTable.txt.gz 2003-05-23 14:45 92
seq.txt.gz 2003-05-23 14:45 3.2M
sex.txt.gz 2003-05-23 14:45 203
softberryGene.txt.gz 2003-05-23 14:45 223
softberryHom.txt.gz 2003-05-23 14:45 260
softberryPep.txt.gz 2003-05-23 14:45 5.6K
source.txt.gz 2003-05-23 14:45 276K
tissue.txt.gz 2003-05-23 14:45 8.9K
xenoBlastzMrna.txt.gz 2003-05-23 14:45 27K
xenoMrna.txt.gz 2003-05-23 14:45 80K
protHomolog.txt.gz 2003-06-20 08:40 5.4K
protPredFile.txt.gz 2003-06-20 08:40 238
gbCdnaInfo.txt.gz 2004-09-28 17:12 3.5M
grp.txt.gz 2004-10-22 04:25 204
hgFindSpec.txt.gz 2005-04-24 05:36 266
history.txt.gz 2005-07-14 05:11 278
trackDb.sql 2007-03-08 07:54 2.0K
trackDb.txt.gz 2007-03-08 07:54 4.0K
tableDescriptions.sql 2008-05-18 03:16 1.2K
tableDescriptions.txt.gz 2008-05-18 03:16 3.8K
all_mrna.sql 2013-10-01 12:48 1.3K
author.sql 2013-10-01 12:48 332
cds.sql 2013-10-01 12:48 326
cell.sql 2013-10-01 12:48 328
chr1_viralProt.sql 2013-10-01 12:48 1.3K
chromInfo.sql 2013-10-01 12:48 394
description.sql 2013-10-01 12:48 342
development.sql 2013-10-01 12:48 342
extFile.sql 2013-10-01 12:48 440
gbCdnaInfo.sql 2013-10-01 12:48 1.5K
gbProtAnn.sql 2013-10-01 12:48 650
gcPercent.sql 2013-10-01 12:48 544
geneName.sql 2013-10-01 12:48 336
grp.sql 2013-10-01 12:48 358
hgFindSpec.sql 2013-10-01 12:48 825
history.sql 2013-10-01 12:48 533
keyword.sql 2013-10-01 12:48 334
library.sql 2013-10-01 12:48 334
mrnaClone.sql 2013-10-01 12:48 338
organism.sql 2013-10-01 12:48 336
otherSARS.sql 2013-10-01 12:48 1.3K
productName.sql 2013-10-01 12:48 342
protHomolog.sql 2013-10-01 12:48 619
protPredFile.sql 2013-10-01 12:48 355
pslTable.sql 2013-10-01 12:48 1.5K
seq.sql 2013-10-01 12:48 594
sex.sql 2013-10-01 12:48 326
softberryGene.sql 2013-10-01 12:48 752
softberryHom.sql 2013-10-01 12:48 381
softberryPep.sql 2013-10-01 12:48 332
source.sql 2013-10-01 12:48 332
tissue.sql 2013-10-01 12:48 332
xenoBlastzMrna.sql 2013-10-01 12:48 1.3K
xenoMrna.sql 2013-10-01 12:48 1.3K