This directory contains a dump of the UCSC genome annotation database for
the Feb. 2007 assembly of the P. pacificus genome
(priPac1, Washington University School of Medicine GSC
Pristionchus pacificus 5.0).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Genome Sequencing Center at the
Washington University School of Medicine in St. Louis.
For more information on the P. pacificus genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Pristionchus+pacificus+var.+california
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=priPac1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/priPac1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
The P. pacificus sequence is made freely available to the community by the
Genome Sequencing Center, Washington University School of Medicine, with
the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing these data
if the providers of these data are properly acknowledged. See
http://genome.ucsc.edu/goldenPath/credits.html for credit information.
3. See also: http://genome.wustl.edu/data.cgi
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-11-17 03:22 33
bigFiles.sql 2024-11-17 03:22 1.4K
tableList.txt.gz 2024-11-17 03:22 2.8K
tableList.sql 2024-11-17 03:22 1.6K
tableDescriptions.txt.gz 2024-11-16 02:03 5.0K
tableDescriptions.sql 2024-11-16 02:03 1.5K
hgFindSpec.txt.gz 2023-03-28 13:52 631
hgFindSpec.sql 2023-03-28 13:52 1.8K
trackDb.txt.gz 2023-03-28 13:52 24K
trackDb.sql 2023-03-28 13:52 2.1K
gbLoaded.txt.gz 2020-09-01 08:22 43K
gbLoaded.sql 2020-09-01 08:22 1.6K
xenoRefSeqAli.txt.gz 2020-09-01 08:22 11M
xenoRefSeqAli.sql 2020-09-01 08:22 2.1K
xenoRefFlat.txt.gz 2020-09-01 08:22 9.1M
xenoRefFlat.sql 2020-09-01 08:22 1.7K
xenoRefGene.txt.gz 2020-09-01 08:22 10M
xenoRefGene.sql 2020-09-01 08:22 2.0K
mrnaOrientInfo.txt.gz 2017-01-02 03:16 1.8K
mrnaOrientInfo.sql 2017-01-02 03:16 1.8K
all_mrna.txt.gz 2017-01-02 03:16 8.8K
all_mrna.sql 2017-01-02 03:16 2.1K
intronEst.txt.gz 2016-05-15 11:17 1.2M
intronEst.sql 2016-05-15 11:17 2.1K
estOrientInfo.txt.gz 2016-05-15 11:17 450K
estOrientInfo.sql 2016-05-15 11:17 1.8K
all_est.txt.gz 2016-05-15 11:17 1.6M
all_est.sql 2016-05-15 11:17 2.1K
xenoMrna.txt.gz 2016-02-21 22:47 80M
xenoMrna.sql 2016-02-21 22:47 2.3K
microsat.txt.gz 2015-08-24 00:34 8.7K
microsat.sql 2015-08-24 00:34 1.5K
augustusGene.txt.gz 2015-07-26 17:21 3.2M
augustusGene.sql 2015-07-26 17:21 1.9K
grp.txt.gz 2014-03-02 04:14 208
grp.sql 2014-03-02 04:14 1.4K
tRNAs.txt.gz 2012-04-16 04:27 35K
tRNAs.sql 2012-04-16 04:27 1.7K
blastCe6SG.txt.gz 2008-08-20 03:18 1.1M
blastCe6SG.sql 2008-08-20 03:18 2.1K
netCe6.txt.gz 2008-08-01 03:30 1.3M
netCe6.sql 2008-08-01 03:30 2.2K
chrUn_chainCe6Link.txt.gz 2008-08-01 03:30 2.9M
chrUn_chainCe6Link.sql 2008-08-01 03:30 1.4K
chrUn_chainCe6.txt.gz 2008-08-01 03:30 876K
chrUn_chainCe6.sql 2008-08-01 03:29 1.7K
simpleRepeat.txt.gz 2007-08-03 16:10 859K
simpleRepeat.sql 2007-08-03 16:10 2.0K
quality.txt.gz 2007-08-03 16:10 2.9M
quality.sql 2007-08-03 16:10 1.7K
netCb3.txt.gz 2007-08-03 16:10 1.4M
netCb3.sql 2007-08-03 16:10 2.2K
netCaeRem2.txt.gz 2007-08-03 16:10 1.5M
netCaeRem2.sql 2007-08-03 16:10 2.2K
netCaePb1.txt.gz 2007-08-03 16:10 2.1M
netCaePb1.sql 2007-08-03 16:10 2.2K
history.txt.gz 2007-08-03 16:09 506
history.sql 2007-08-03 16:09 1.4K
gc5Base.txt.gz 2007-08-03 16:09 708K
gc5Base.sql 2007-08-03 16:09 1.7K
ctgPos2.txt.gz 2007-08-03 16:08 256K
ctgPos2.sql 2007-08-03 16:08 1.4K
chromInfo.txt.gz 2007-08-03 16:08 70
chromInfo.sql 2007-08-03 16:08 1.2K
chrUn_rmsk.txt.gz 2007-08-03 16:08 1.0M
chrUn_rmsk.sql 2007-08-03 16:08 1.9K
chrUn_gold.txt.gz 2007-08-03 16:08 83K
chrUn_gold.sql 2007-08-03 16:08 1.6K
chrUn_gap.txt.gz 2007-08-03 16:08 246K
chrUn_gap.sql 2007-08-03 16:08 1.5K
chrUn_chainCb3Link.txt.gz 2007-08-03 16:07 4.1M
chrUn_chainCb3Link.sql 2007-08-03 16:07 1.4K
chrUn_chainCb3.txt.gz 2007-08-03 16:07 1.4M
chrUn_chainCb3.sql 2007-08-03 16:07 1.7K
chrUn_chainCaeRem2Link.txt.gz 2007-08-03 16:07 8.9M
chrUn_chainCaeRem2Link.sql 2007-08-03 16:07 1.4K
chrUn_chainCaeRem2.txt.gz 2007-08-03 16:07 3.2M
chrUn_chainCaeRem2.sql 2007-08-03 16:07 1.7K
chrUn_chainCaePb1Link.txt.gz 2007-08-03 16:07 56M
chrUn_chainCaePb1Link.sql 2007-08-03 16:06 1.4K
chrUn_chainCaePb1.txt.gz 2007-08-03 16:06 31M
chrUn_chainCaePb1.sql 2007-08-03 16:05 1.7K