This directory contains reciprocal-best netted chains for ponAbe3-hg38.
- ponAbe3.hg38.rbest.net.gz: ponAbe3-referenced recip.best net to hg38.
- ponAbe3.hg38.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from ponAbe3 to hg38 through the recip.best net.
- hg38.ponAbe3.rbest.net.gz: hg38-referenced recip.best net.
- hg38.ponAbe3.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/ponAbe3.hg38.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2018-11-01 11:44 -
ponAbe3.hg38.rbest.net.gz 2018-03-26 22:00 33M
md5sum.txt 2018-03-26 22:00 244
ponAbe3.hg38.rbest.chain.gz 2018-03-26 21:59 20M
hg38.ponAbe3.rbest.chain.gz 2018-03-26 21:59 20M
hg38.ponAbe3.rbest.net.gz 2018-03-26 21:58 34M