This directory contains reciprocal-best netted chains for petMar3-galGal6.
- petMar3.galGal6.rbest.net.gz: petMar3-referenced recip.best net to galGal6.
- petMar3.galGal6.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from petMar3 to galGal6 through the recip.best net.
- galGal6.petMar3.rbest.net.gz: galGal6-referenced recip.best net.
- galGal6.petMar3.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/petMar3.galGal6.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
galGal6.petMar3.rbest.net.gz 2018-10-26 10:49 6.0M
galGal6.petMar3.rbest.chain.gz 2018-10-26 10:49 3.6M
petMar3.galGal6.rbest.chain.gz 2018-10-26 10:49 3.6M
petMar3.galGal6.rbest.net.gz 2018-10-26 10:49 5.8M
md5sum.txt 2018-10-26 10:49 256
axtRBestNet/ 2018-10-26 11:51 -