This directory contains reciprocal-best netted chains for panPan3-mm10.
- panPan3.mm10.rbest.net.gz: panPan3-referenced recip.best net to mm10.
- panPan3.mm10.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from panPan3 to mm10 through the recip.best net.
- mm10.panPan3.rbest.net.gz: mm10-referenced recip.best net.
- mm10.panPan3.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/panPan3.mm10.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2020-07-08 09:54 -
md5sum.txt 2020-06-16 13:01 244
panPan3.mm10.rbest.net.gz 2020-06-16 13:01 139M
panPan3.mm10.rbest.chain.gz 2020-06-16 13:00 65M
mm10.panPan3.rbest.chain.gz 2020-06-16 12:59 64M
mm10.panPan3.rbest.net.gz 2020-06-16 12:58 91M