Medaka 5-way conservation track, phastCons 5-Way raw data scores The chromosome data values are in the files: chr*.data.txt.gz The scaffolds and ultracontig data values are in the files: file_*.data.txt.gz The tree models used with the phastCons operation are in the files: 5way.conserved.mod and 5way.non-conserved.mod The format of these files are fixedStep wiggle files. see also: http://genome.ucsc.edu/goldenPath/help/wiggle.html A data section is introduced in each file with a line declaring the chromosome, the starting position, and the span. For example, chrM.data.gz begins: fixedStep chrom=chrM start=1 step=1 0.970 0.990 0.995 0.997 0.997 ... etc ... Following the fixedStep line are data values. They start at the position specified by the 'start=N' value on the fixedStep line. In this example, the first value 0.860 is at the first nucleotide of chrM, the next value 0.917 is at the second nucleotide of chrM. The 'step=1' specifies that each value spans a single nucleotide. There can be numerous fixedStep declarations in each file. For nucleotide positions not covered by the data specified, there are no data values. These raw data values are compressed into single byte representations when loaded into the database for the genome browser display. The compression results in some loss of precision. This is an acceptable trade-off because the genome browser display is a large compression of data into the simple bar graph even if it hadn't been compressed before display. This means that values obtained from the data base via the Table Browser function of the genome browser, will be different than these raw data values.
Name Last modified Size Description
Parent Directory - file_0.data.txt.gz 2008-09-08 09:20 24M chr3.data.txt.gz 2008-09-05 15:21 21M chr9.data.txt.gz 2008-09-05 15:23 20M chr4.data.txt.gz 2008-09-05 15:22 20M chr13.data.txt.gz 2008-09-05 15:24 18M chr16.data.txt.gz 2008-09-05 15:25 18M chr7.data.txt.gz 2008-09-05 15:22 18M chr5.data.txt.gz 2008-09-05 15:22 18M chr1.data.txt.gz 2008-09-05 15:21 17M chr17.data.txt.gz 2008-09-05 15:25 17M chr15.data.txt.gz 2008-09-05 15:24 17M chr6.data.txt.gz 2008-09-05 15:22 17M chr22.data.txt.gz 2008-09-05 15:26 16M chr21.data.txt.gz 2008-09-05 15:26 16M chr8.data.txt.gz 2008-09-05 15:23 16M chr14.data.txt.gz 2008-09-05 15:24 15M chr10.data.txt.gz 2008-09-05 15:23 15M chr12.data.txt.gz 2008-09-05 15:24 15M chr20.data.txt.gz 2008-09-05 15:25 14M chr11.data.txt.gz 2008-09-05 15:23 14M chr24.data.txt.gz 2008-09-05 15:26 13M chr19.data.txt.gz 2008-09-05 15:25 12M chr18.data.txt.gz 2008-09-05 15:25 12M chr23.data.txt.gz 2008-09-05 15:26 11M chr2.data.txt.gz 2008-09-05 15:21 9.3M file_1.data.txt.gz 2008-09-08 09:20 6.2M file_2.data.txt.gz 2008-09-08 09:20 3.7M file_3.data.txt.gz 2008-09-08 09:20 3.1M file_4.data.txt.gz 2008-09-08 09:20 2.0M file_5.data.txt.gz 2008-09-08 09:20 1.8M file_6.data.txt.gz 2008-09-08 09:20 1.7M file_7.data.txt.gz 2008-09-08 09:20 1.5M file_8.data.txt.gz 2008-09-08 09:20 1.3M file_9.data.txt.gz 2008-09-08 09:20 1.2M file_10.data.txt.gz 2008-09-08 09:20 1.1M file_11.data.txt.gz 2008-09-08 09:20 1.1M file_13.data.txt.gz 2008-09-08 09:20 960K file_12.data.txt.gz 2008-09-08 09:20 931K file_14.data.txt.gz 2008-09-08 09:20 859K file_15.data.txt.gz 2008-09-08 09:20 811K file_16.data.txt.gz 2008-09-08 09:20 730K file_17.data.txt.gz 2008-09-08 09:20 666K file_18.data.txt.gz 2008-09-08 09:20 618K file_20.data.txt.gz 2008-09-08 09:20 536K file_22.data.txt.gz 2008-09-08 09:20 521K file_19.data.txt.gz 2008-09-08 09:20 497K file_23.data.txt.gz 2008-09-08 09:20 456K file_21.data.txt.gz 2008-09-08 09:20 446K file_25.data.txt.gz 2008-09-08 09:20 422K file_24.data.txt.gz 2008-09-08 09:20 378K file_28.data.txt.gz 2008-09-08 09:20 346K file_27.data.txt.gz 2008-09-08 09:20 325K file_29.data.txt.gz 2008-09-08 09:20 315K file_26.data.txt.gz 2008-09-08 09:20 310K file_30.data.txt.gz 2008-09-08 09:20 294K file_31.data.txt.gz 2008-09-08 09:20 258K file_33.data.txt.gz 2008-09-08 09:20 251K file_32.data.txt.gz 2008-09-08 09:20 238K file_37.data.txt.gz 2008-09-08 09:20 216K file_34.data.txt.gz 2008-09-08 09:20 212K file_35.data.txt.gz 2008-09-08 09:20 210K file_36.data.txt.gz 2008-09-08 09:20 191K file_38.data.txt.gz 2008-09-08 09:20 175K file_40.data.txt.gz 2008-09-08 09:20 169K file_39.data.txt.gz 2008-09-08 09:20 168K file_41.data.txt.gz 2008-09-08 09:20 145K file_45.data.txt.gz 2008-09-08 09:20 145K file_44.data.txt.gz 2008-09-08 09:20 122K file_43.data.txt.gz 2008-09-08 09:20 121K file_42.data.txt.gz 2008-09-08 09:20 114K file_46.data.txt.gz 2008-09-08 09:21 111K file_48.data.txt.gz 2008-09-08 09:21 99K file_49.data.txt.gz 2008-09-08 09:21 99K file_61.data.txt.gz 2008-09-08 09:21 77K file_50.data.txt.gz 2008-09-08 09:21 76K file_47.data.txt.gz 2008-09-08 09:21 74K file_62.data.txt.gz 2008-09-08 09:21 72K file_51.data.txt.gz 2008-09-08 09:21 66K file_53.data.txt.gz 2008-09-08 09:21 64K file_58.data.txt.gz 2008-09-08 09:21 56K file_64.data.txt.gz 2008-09-08 09:21 56K file_56.data.txt.gz 2008-09-08 09:21 55K file_63.data.txt.gz 2008-09-08 09:21 54K file_54.data.txt.gz 2008-09-08 09:21 48K file_60.data.txt.gz 2008-09-08 09:21 46K file_52.data.txt.gz 2008-09-08 09:21 46K file_57.data.txt.gz 2008-09-08 09:21 46K file_55.data.txt.gz 2008-09-08 09:21 44K file_59.data.txt.gz 2008-09-08 09:21 33K chrM.data.txt.gz 2008-09-05 15:26 26K md5sum.txt 2008-09-08 14:25 4.8K 5way.non-conserved.mod 2008-09-05 12:00 421 5way.conserved.mod 2008-09-05 12:00 421