This directory contains reciprocal-best netted chains for neoSch1-mm10.
- neoSch1.mm10.rbest.net.gz: neoSch1-referenced recip.best net to mm10.
- neoSch1.mm10.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from neoSch1 to mm10 through the recip.best net.
- mm10.neoSch1.rbest.net.gz: mm10-referenced recip.best net.
- mm10.neoSch1.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/neoSch1.mm10.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2020-11-23 13:33 -
md5sum.txt 2018-03-16 10:56 244
mm10.neoSch1.rbest.chain.gz 2018-03-16 10:49 59M
neoSch1.mm10.rbest.chain.gz 2018-03-16 10:50 59M
mm10.neoSch1.rbest.net.gz 2018-03-16 10:45 92M
neoSch1.mm10.rbest.net.gz 2018-03-16 10:56 123M