This directory contains reciprocal-best netted chains for mm39-speTri2.

 - mm39.speTri2.rbest.net.gz: mm39-referenced recip.best net to speTri2.
 - mm39.speTri2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm39 to speTri2 through the recip.best net.

 - speTri2.mm39.rbest.net.gz: speTri2-referenced recip.best net.
 - speTri2.mm39.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm39.speTri2.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                                               Last modified      Size  Description
      Parent Directory                                                        -   
      axtRBestNet/                                       2021-03-15 15:53    -   
      md5sum.txt                                         2020-11-25 21:19  244   
      mm39.speTri2.rbest.chain.gz                        2020-11-25 21:17   64M  
      speTri2.mm39.rbest.chain.gz                        2020-11-25 21:16   65M  
      mm39.speTri2.rbest.net.gz                          2020-11-25 21:19  105M  
      speTri2.mm39.rbest.net.gz                          2020-11-25 21:15  128M