Index of /goldenPath/currentGenomes/Loxodonta_africana/vsMm39/reciprocalBest

This directory contains reciprocal-best netted chains for loxAfr3-mm39.

 - loxAfr3.mm39.rbest.net.gz: loxAfr3-referenced recip.best net to mm39.
 - loxAfr3.mm39.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from loxAfr3 to mm39 through the recip.best net.

 - mm39.loxAfr3.rbest.net.gz: mm39-referenced recip.best net.
 - mm39.loxAfr3.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/loxAfr3.mm39.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                                                  Last modified      Size  Description
      Parent Directory                                                           -   
      axtRBestNet/                                          2021-03-15 14:59    -   
      md5sum.txt                                            2020-11-25 04:48  244   
      mm39.loxAfr3.rbest.chain.gz                           2020-11-25 04:46   49M  
      loxAfr3.mm39.rbest.chain.gz                           2020-11-25 04:47   49M  
      mm39.loxAfr3.rbest.net.gz                             2020-11-25 04:46   76M  
      loxAfr3.mm39.rbest.net.gz                             2020-11-25 04:48  103M