This directory contains reciprocal-best netted chains for hg38-neoSch1.
- hg38.neoSch1.rbest.net.gz: hg38-referenced recip.best net to neoSch1.
- hg38.neoSch1.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from hg38 to neoSch1 through the recip.best net.
- neoSch1.hg38.rbest.net.gz: neoSch1-referenced recip.best net.
- neoSch1.hg38.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/hg38.neoSch1.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
neoSch1.hg38.rbest.net.gz 2018-03-16 10:49 135M
neoSch1.hg38.rbest.chain.gz 2018-03-16 10:53 80M
md5sum.txt 2018-03-16 11:01 244
hg38.neoSch1.rbest.net.gz 2018-03-16 11:01 154M
hg38.neoSch1.rbest.chain.gz 2018-03-16 10:54 80M
axtRBestNet/ 2018-03-21 22:21 -