This directory contains reciprocal-best netted chains for hg38-colAng1.
- hg38.colAng1.rbest.net.gz: hg38-referenced recip.best net to colAng1.
- hg38.colAng1.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from hg38 to colAng1 through the recip.best net.
- colAng1.hg38.rbest.net.gz: colAng1-referenced recip.best net.
- colAng1.hg38.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/hg38.colAng1.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
hg38.colAng1.rbest.net.gz 2017-02-27 14:47 62M
colAng1.hg38.rbest.net.gz 2017-02-27 14:45 54M
colAng1.hg38.rbest.chain.gz 2017-02-27 14:46 33M
hg38.colAng1.rbest.chain.gz 2017-02-27 14:46 33M
md5sum.txt 2017-02-27 14:47 244
axtRBestNet/ 2017-02-27 18:44 -