This directory contains a dump of the UCSC genome annotation
database for the Mar. 2005 v2.0 assembly (UCSC version ci2)
of the C. intestinalis genome from the US DOE Joint Genome
Institute (JGI).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ci2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ci2/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
To view restrictions on the use of the v1.0 data, see the JGI data
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory -
crisprTargets.txt.gz 2016-10-30 06:26 59
bigFiles.txt.gz 2024-11-17 03:33 65
history.txt.gz 2005-09-09 11:44 194
grp.txt.gz 2014-03-02 03:40 223
gbDelete_tmp.sql 2013-10-01 12:48 322
history.sql 2013-10-01 12:48 533
hgFindSpec.txt.gz 2023-03-28 13:47 620
gap.sql 2013-10-01 12:48 704
gc5Base.sql 2013-10-01 12:48 888
rmsk.sql 2013-10-01 12:48 1.0K
simpleRepeat.sql 2013-10-01 12:48 1.1K
chromInfo.sql 2007-03-12 09:42 1.2K
ensPep.sql 2011-03-14 10:15 1.3K
ensemblSource.sql 2011-11-13 15:39 1.3K
crisprTargets.sql 2016-10-30 06:26 1.3K
ensemblToGeneName.sql 2011-11-13 15:37 1.3K
ensGtp.sql 2011-11-13 15:35 1.4K
grp.sql 2014-03-02 03:40 1.4K
bigFiles.sql 2024-11-17 03:33 1.4K
crisprRanges.sql 2016-10-30 06:26 1.4K
tableDescriptions.sql 2024-11-16 02:03 1.5K
microsat.sql 2015-08-23 12:49 1.5K
locusName.sql 2016-10-30 06:26 1.5K
tableList.sql 2024-11-17 03:33 1.6K
gbLoaded.sql 2020-08-21 07:25 1.6K
refFlat.sql 2020-08-21 07:18 1.7K
xenoRefFlat.sql 2020-08-21 07:25 1.7K
hgFindSpec.sql 2023-03-28 13:47 1.8K
estOrientInfo.sql 2016-06-05 09:32 1.8K
mrnaOrientInfo.sql 2020-08-21 07:02 1.8K
ensGene.sql 2011-03-14 10:18 1.8K
pubsBlat.sql 2012-05-07 12:56 1.9K
refGene.sql 2020-08-21 07:18 1.9K
xenoRefGene.sql 2020-08-21 07:25 1.9K
trackDb.sql 2023-03-28 13:47 2.1K
pubsBlatPsl.sql 2012-05-07 12:56 2.1K
all_est.sql 2016-06-05 09:30 2.1K
intronEst.sql 2016-06-05 09:32 2.1K
refSeqAli.sql 2019-07-28 04:39 2.1K
all_mrna.sql 2020-08-21 07:02 2.1K
xenoMrna.sql 2020-08-21 07:02 2.1K
microsat.txt.gz 2015-08-23 12:49 2.1K
xenoRefSeqAli.sql 2020-08-21 07:25 2.1K
pubsBingBlatPsl.sql 2014-01-26 09:59 2.2K
pubsBingBlat.sql 2014-01-26 09:59 2.4K
tableList.txt.gz 2024-11-17 03:33 2.5K
tableDescriptions.txt.gz 2024-11-16 02:03 5.3K
trackDb.txt.gz 2023-03-28 13:47 19K
pubsBlat.txt.gz 2012-05-07 12:56 26K
chromInfo.txt.gz 2005-09-09 11:38 35K
pubsBingBlatPsl.txt.gz 2014-01-26 09:59 37K
pubsBlatPsl.txt.gz 2012-05-07 12:56 38K
ensemblSource.txt.gz 2011-11-13 15:39 64K
pubsBingBlat.txt.gz 2014-01-26 09:59 67K
refFlat.txt.gz 2020-08-21 07:18 86K
refGene.txt.gz 2020-08-21 07:18 94K
refSeqAli.txt.gz 2019-07-28 04:39 101K
gbLoaded.txt.gz 2020-08-21 07:25 111K
ensemblToGeneName.txt.gz 2011-11-13 15:37 121K
gbDelete_tmp.txt.gz 2005-09-27 05:01 139K
mrnaOrientInfo.txt.gz 2020-08-21 07:02 147K
ensGtp.txt.gz 2011-11-13 15:35 188K
gap.txt.gz 2005-09-09 11:42 275K
crisprRanges.txt.gz 2016-10-30 06:26 367K
all_mrna.txt.gz 2020-08-21 07:02 666K
gc5Base.txt.gz 2005-09-09 11:44 710K
simpleRepeat.txt.gz 2005-09-09 11:44 1.2M
ensGene.txt.gz 2011-03-14 10:18 1.3M
locusName.txt.gz 2016-10-30 06:26 1.6M
ensPep.txt.gz 2011-03-14 10:15 3.6M
rmsk.txt.gz 2005-09-09 11:44 4.1M
xenoRefFlat.txt.gz 2020-08-21 07:25 7.8M
xenoRefGene.txt.gz 2020-08-21 07:25 8.6M
xenoRefSeqAli.txt.gz 2020-08-21 07:25 8.9M
estOrientInfo.txt.gz 2016-06-05 09:32 11M
intronEst.txt.gz 2016-06-05 09:32 27M
all_est.txt.gz 2016-06-05 09:31 41M
xenoMrna.txt.gz 2020-08-21 07:02 94M