This directory contains reciprocal-best netted chains for canFam4-mm10.
- canFam4.mm10.rbest.net.gz: canFam4-referenced recip.best net to mm10.
- canFam4.mm10.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from canFam4 to mm10 through the recip.best net.
- mm10.canFam4.rbest.net.gz: mm10-referenced recip.best net.
- mm10.canFam4.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/canFam4.mm10.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2020-07-07 18:33 -
md5sum.txt 2020-04-10 09:31 244
canFam4.mm10.rbest.net.gz 2020-04-10 09:31 115M
canFam4.mm10.rbest.chain.gz 2020-04-10 09:30 56M
mm10.canFam4.rbest.chain.gz 2020-04-10 09:29 56M
mm10.canFam4.rbest.net.gz 2020-04-10 09:28 84M