This directory contains reciprocal-best netted chains for calJac4-mm39.

 - calJac4.mm39.rbest.net.gz: calJac4-referenced recip.best net to mm39.
 - calJac4.mm39.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from calJac4 to mm39 through the recip.best net.

 - mm39.calJac4.rbest.net.gz: mm39-referenced recip.best net.
 - mm39.calJac4.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/calJac4.mm39.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                                                  Last modified      Size  Description
      Parent Directory                                                           -   
      axtRBestNet/                                          2021-02-16 15:03    -   
      calJac4.mm39.rbest.chain.gz                           2020-09-08 13:26   62M  
      calJac4.mm39.rbest.net.gz                             2020-09-08 13:28  130M  
      md5sum.txt                                            2020-09-08 13:28  244   
      mm39.calJac4.rbest.chain.gz                           2020-09-08 13:25   62M  
      mm39.calJac4.rbest.net.gz                             2020-09-08 13:24   91M