This directory contains reciprocal-best netted chains for braFlo1-hg18.

 - braFlo1.hg18.rbest.net.gz: braFlo1-referenced recip.best net to hg18.
 - braFlo1.hg18.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from braFlo1 to hg18 through the recip.best net.

 - hg18.braFlo1.rbest.net.gz: hg18-referenced recip.best net.
 - hg18.braFlo1.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/chr*.braFlo1.hg18.rbest.axt.gz: chained and netted alignments,
   i.e. the best chains in the Lanclet genome, with gaps in the best
   chains filled in by next-best chains where possible.  Only alignments
   that are reciprocal best are kept.  The axt format is
   described in http://genome.ucsc.edu/goldenPath/help/axt.html .

      Name                                                      Last modified      Size  Description
      Parent Directory                                                               -   
      md5sum.txt                                                2008-06-03 11:53  244   
      hg18.braFlo1.rbest.net.gz                                 2008-04-29 13:33  2.2M  
      hg18.braFlo1.rbest.chain.gz                               2008-04-29 13:33  1.4M  
      braFlo1.hg18.rbest.net.gz                                 2008-04-29 13:33  2.1M  
      braFlo1.hg18.rbest.chain.gz                               2008-04-29 13:33  1.4M  
      axtRBestNet/                                              2008-06-03 12:44    -