This directory contains reciprocal-best netted chains for braFlo1-galGal3.

 - braFlo1.galGal3.rbest.net.gz: braFlo1-referenced recip.best net to galGal3.
 - braFlo1.galGal3.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from braFlo1 to galGal3 through the recip.best net.

 - galGal3.braFlo1.rbest.net.gz: galGal3-referenced recip.best net.
 - galGal3.braFlo1.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/chr*.braFlo1.galGal3.rbest.axt.gz: chained and netted alignments,
   i.e. the best chains in the Lancelet genome, with gaps in the best
   chains filled in by next-best chains where possible.  Only alignments
   that are reciprocal best are kept.  The axt format is
   described in http://genome.ucsc.edu/goldenPath/help/axt.html .

      Name                                                         Last modified      Size  Description
      Parent Directory                                                                  -   
      axtRBestNet/                                                 2008-06-03 12:49    -   
      md5sum.txt                                                   2008-04-17 12:14  256   
      braFlo1.galGal3.rbest.net.gz                                 2008-04-17 12:14  2.2M  
      braFlo1.galGal3.rbest.chain.gz                               2008-04-17 12:14  1.3M  
      galGal3.braFlo1.rbest.chain.gz                               2008-04-17 12:14  1.3M  
      galGal3.braFlo1.rbest.net.gz                                 2008-04-17 12:14  2.2M