This directory contains the tables from the UCSC Genome Browser
database for the Apis mellifera Amel_2.0 assembly (apiMel2, Jan. 2005)
from the Baylor College of Medicine HGSC Honey Bee Genome Project.
For more information, see the Baylor website:
http://www.hgsc.bcm.tmc.edu/projects/honeybee/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=apiMel2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/apiMel2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
For conditions of use regarding the A. mellifera sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
rmsk.txt.gz 2005-02-23 16:07 8.7M
chromInfo.txt.gz 2005-02-23 16:08 244
gap.txt.gz 2005-02-23 16:08 212K
gc5Base.txt.gz 2005-02-23 16:08 1.1M
genscan.txt.gz 2005-02-23 16:08 939K
genscanPep.txt.gz 2005-02-23 16:08 4.3M
gold.txt.gz 2005-02-23 16:08 282K
history.txt.gz 2005-02-23 16:08 357
simpleRepeat.txt.gz 2005-02-23 16:08 2.5M
scaffolds.txt.gz 2005-03-02 05:07 95K
blastHg17KG.txt.gz 2005-03-30 05:40 1.6M
ensGene.txt.gz 2005-04-22 05:39 1.5M
ensPep.txt.gz 2005-04-22 05:39 2.9M
modelRefGene.txt.gz 2005-06-10 04:24 774K
brhInparalog.txt.gz 2005-06-10 04:24 547K
blastDm2FB.txt.gz 2005-07-28 05:23 971K
gbDelete_tmp.txt.gz 2005-09-28 04:52 180K
geneid.txt.gz 2006-01-19 05:51 971K
netDm2.sql 2006-11-04 07:08 2.2K
netDm2.txt.gz 2006-11-04 07:08 7.7M
Group10_chainDm2.sql 2006-11-04 07:08 1.7K
Group10_chainDm2.txt.gz 2006-11-04 07:08 176K
Group11_chainDm2.sql 2006-11-04 07:08 1.7K
Group1_chainDm2.sql 2006-11-04 07:08 1.7K
Group1_chainDm2.txt.gz 2006-11-04 07:08 384K
Group10_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group11_chainDm2.txt.gz 2006-11-04 07:08 225K
Group10_chainDm2Link.txt.gz 2006-11-04 07:08 2.5M
Group11_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group11_chainDm2Link.txt.gz 2006-11-04 07:08 3.4M
Group12_chainDm2.sql 2006-11-04 07:08 1.7K
Group12_chainDm2.txt.gz 2006-11-04 07:08 152K
Group12_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group12_chainDm2Link.txt.gz 2006-11-04 07:08 2.0M
Group13_chainDm2.sql 2006-11-04 07:08 1.7K
Group13_chainDm2.txt.gz 2006-11-04 07:08 112K
Group13_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group13_chainDm2Link.txt.gz 2006-11-04 07:08 1.3M
Group14_chainDm2.sql 2006-11-04 07:08 1.7K
Group14_chainDm2.txt.gz 2006-11-04 07:08 154K
Group14_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group14_chainDm2Link.txt.gz 2006-11-04 07:08 1.9M
Group15_chainDm2.sql 2006-11-04 07:08 1.7K
Group15_chainDm2.txt.gz 2006-11-04 07:08 139K
Group15_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group15_chainDm2Link.txt.gz 2006-11-04 07:08 1.9M
Group16_chainDm2.sql 2006-11-04 07:08 1.7K
Group16_chainDm2.txt.gz 2006-11-04 07:08 126K
Group16_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group16_chainDm2Link.txt.gz 2006-11-04 07:08 1.8M
Group1_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group1_chainDm2Link.txt.gz 2006-11-04 07:08 5.6M
Group2_chainDm2.sql 2006-11-04 07:08 1.7K
Group2_chainDm2.txt.gz 2006-11-04 07:08 234K
Group2_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group2_chainDm2Link.txt.gz 2006-11-04 07:08 3.1M
Group3_chainDm2.sql 2006-11-04 07:08 1.7K
Group3_chainDm2.txt.gz 2006-11-04 07:08 350K
Group3_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group3_chainDm2Link.txt.gz 2006-11-04 07:08 3.0M
Group4_chainDm2.sql 2006-11-04 07:08 1.7K
Group4_chainDm2.txt.gz 2006-11-04 07:08 213K
Group4_chainDm2Link.sql 2006-11-04 07:08 1.4K
Group4_chainDm2Link.txt.gz 2006-11-04 07:08 2.5M
Group5_chainDm2.sql 2006-11-04 07:09 1.7K
Group5_chainDm2.txt.gz 2006-11-04 07:09 243K
Group5_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group5_chainDm2Link.txt.gz 2006-11-04 07:09 3.7M
Group6_chainDm2.sql 2006-11-04 07:09 1.7K
Group6_chainDm2.txt.gz 2006-11-04 07:09 228K
Group6_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group6_chainDm2Link.txt.gz 2006-11-04 07:09 3.1M
Group7_chainDm2.sql 2006-11-04 07:09 1.7K
Group7_chainDm2.txt.gz 2006-11-04 07:09 231K
Group7_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group7_chainDm2Link.txt.gz 2006-11-04 07:09 3.1M
Group8_chainDm2.sql 2006-11-04 07:09 1.7K
Group8_chainDm2.txt.gz 2006-11-04 07:09 184K
Group8_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group8_chainDm2Link.txt.gz 2006-11-04 07:09 2.5M
Group9_chainDm2.sql 2006-11-04 07:09 1.7K
Group9_chainDm2.txt.gz 2006-11-04 07:09 162K
Group9_chainDm2Link.sql 2006-11-04 07:09 1.4K
Group9_chainDm2Link.txt.gz 2006-11-04 07:09 2.1M
GroupUn_chainDm2.sql 2006-11-04 07:09 1.7K
GroupUn_chainDm2.txt.gz 2006-11-04 07:09 3.0M
GroupUn_chainDm2Link.sql 2006-11-04 07:09 1.4K
GroupUn_chainDm2Link.txt.gz 2006-11-04 07:09 61M
blastDm2FB.sql 2013-10-01 12:48 1.3K
blastHg17KG.sql 2013-10-01 12:48 1.3K
brhInparalog.sql 2013-10-01 12:48 756
chromInfo.sql 2013-10-01 12:48 396
ensGene.sql 2013-10-01 12:48 1.0K
ensPep.sql 2013-10-01 12:48 322
gap.sql 2013-10-01 12:48 722
gbDelete_tmp.sql 2013-10-01 12:48 326
gc5Base.sql 2013-10-01 12:48 891
geneid.sql 2013-10-01 12:48 1.0K
genscan.sql 2013-10-01 12:48 748
genscanPep.sql 2013-10-01 12:48 330
gold.sql 2013-10-01 12:48 799
history.sql 2013-10-01 12:48 537
modelRefGene.sql 2013-10-01 12:48 1.0K
rmsk.sql 2013-10-01 12:48 1.1K
scaffolds.sql 2013-10-01 12:48 592
simpleRepeat.sql 2013-10-01 12:48 1.1K
grp.sql 2014-03-02 03:37 1.4K
grp.txt.gz 2014-03-02 03:37 223
augustusGene.sql 2015-07-26 10:11 1.9K
augustusGene.txt.gz 2015-07-26 10:11 843K
microsat.sql 2015-08-23 09:54 1.5K
microsat.txt.gz 2015-08-23 09:54 52K
all_est.sql 2016-06-12 06:06 2.4K
all_est.txt.gz 2016-06-12 06:06 2.9M
estOrientInfo.sql 2016-06-12 06:06 1.9K
estOrientInfo.txt.gz 2016-06-12 06:06 866K
intronEst.sql 2016-06-12 06:07 2.4K
intronEst.txt.gz 2016-06-12 06:07 1.4M
all_mrna.sql 2020-08-18 04:58 2.4K
all_mrna.txt.gz 2020-08-18 04:58 7.0M
xenoMrna.sql 2020-08-18 04:58 2.4K
xenoMrna.txt.gz 2020-08-18 04:58 145M
mrnaOrientInfo.sql 2020-08-18 04:58 1.9K
mrnaOrientInfo.txt.gz 2020-08-18 04:58 1.4M
xenoRefGene.sql 2020-08-18 05:07 2.0K
xenoRefGene.txt.gz 2020-08-18 05:07 5.8M
xenoRefFlat.sql 2020-08-18 05:07 1.7K
xenoRefFlat.txt.gz 2020-08-18 05:07 5.2M
xenoRefSeqAli.sql 2020-08-18 05:20 2.1K
xenoRefSeqAli.txt.gz 2020-08-18 05:20 5.6M
gbLoaded.sql 2020-08-18 05:22 1.7K
gbLoaded.txt.gz 2020-08-18 05:22 202K
cpgIslandExtUnmasked.sql 2024-08-05 11:23 1.8K
cpgIslandExtUnmasked.txt.gz 2024-08-05 11:23 136K
cpgIslandExt.sql 2024-08-05 11:24 1.7K
cpgIslandExt.txt.gz 2024-08-05 11:24 124K
trackDb.sql 2024-08-05 16:56 2.1K
trackDb.txt.gz 2024-08-05 16:56 28K
hgFindSpec.sql 2024-08-05 16:56 1.8K
hgFindSpec.txt.gz 2024-08-05 16:56 1.0K
tableDescriptions.sql 2024-11-23 02:03 1.5K
tableDescriptions.txt.gz 2024-11-23 02:03 5.3K
tableList.sql 2024-11-24 03:25 1.6K
tableList.txt.gz 2024-11-24 03:25 3.4K
bigFiles.sql 2024-11-24 03:25 1.4K
bigFiles.txt.gz 2024-11-24 03:25 33