This directory contains a dump of the UCSC genome annotation database for the
    Jun. 2017 (CHOK1S_HZDv1/criGriChoV2) assembly of the chinese hamster genome
    (criGriChoV2, Eagle Genomics Ltd) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/2791
    https://www.ncbi.nlm.nih.gov/genome/assembly/1422381
    https://www.ncbi.nlm.nih.gov/bioproject/PRJEB21211

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=criGriChoV2
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/criGriChoV2/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV2/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV2/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV2/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV2/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql criGriChoV2 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql criGriChoV2 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - all_est.sql 2019-06-05 10:21 2.1K all_est.txt.gz 2019-06-05 10:21 838 all_mrna.sql 2019-06-05 10:21 2.1K all_mrna.txt.gz 2019-06-05 10:21 2.8M augustusGene.sql 2019-06-05 10:21 1.9K augustusGene.txt.gz 2019-06-05 10:21 2.3M bigFiles.sql 2021-05-16 03:03 1.4K bigFiles.txt.gz 2021-05-16 03:03 73 chainHg38.sql 2019-06-05 10:21 1.7K chainHg38.txt.gz 2019-06-05 10:22 442M chainHg38Link.sql 2019-06-05 10:23 1.5K chainHg38Link.txt.gz 2019-06-05 10:25 1.4G chainMm10.sql 2019-06-05 10:30 1.7K chainMm10.txt.gz 2019-06-05 10:31 412M chainMm10Link.sql 2019-06-05 10:32 1.5K chainMm10Link.txt.gz 2019-06-05 10:35 1.8G chromAlias.sql 2019-06-05 10:41 1.4K chromAlias.txt.gz 2019-06-05 10:41 80K chromInfo.sql 2019-06-05 10:42 1.4K chromInfo.txt.gz 2019-06-05 10:42 33K cpgIslandExt.sql 2019-06-05 10:42 1.7K cpgIslandExt.txt.gz 2019-06-05 10:42 410K cpgIslandExtUnmasked.sql 2019-06-05 10:42 1.7K cpgIslandExtUnmasked.txt.gz 2019-06-05 10:42 420K cytoBandIdeo.sql 2019-06-05 10:42 1.5K cytoBandIdeo.txt.gz 2019-06-05 10:42 31K ensGene.sql 2020-08-31 15:28 1.9K ensGene.txt.gz 2020-08-31 15:28 2.3M ensGtp.sql 2020-08-31 15:28 1.4K ensGtp.txt.gz 2020-08-31 15:28 318K ensPep.sql 2020-08-31 15:51 1.3K ensPep.txt.gz 2020-08-31 15:51 6.6M ensemblSource.sql 2020-08-31 15:51 1.4K ensemblSource.txt.gz 2020-08-31 15:51 87K ensemblToGeneName.sql 2020-08-31 15:28 1.4K ensemblToGeneName.txt.gz 2020-08-31 15:28 178K estOrientInfo.sql 2019-06-05 10:42 1.8K estOrientInfo.txt.gz 2019-06-05 10:42 286 gap.sql 2019-06-05 10:42 1.6K gap.txt.gz 2019-06-05 10:42 728K gapOverlap.sql 2019-06-05 10:43 1.8K gapOverlap.txt.gz 2019-06-05 10:43 232K gc5BaseBw.sql 2019-06-05 10:43 1.3K gc5BaseBw.txt.gz 2019-06-05 10:43 70 genscan.sql 2019-06-05 10:43 1.7K genscan.txt.gz 2019-06-05 10:43 3.2M gold.sql 2019-06-05 10:21 1.7K gold.txt.gz 2019-06-05 10:21 1.2M grp.sql 2019-06-05 10:30 1.4K grp.txt.gz 2019-06-05 10:30 213 hgFindSpec.sql 2020-12-06 07:50 1.7K hgFindSpec.txt.gz 2020-12-06 07:50 823 history.sql 2019-06-05 10:41 1.6K history.txt.gz 2019-06-05 10:41 823 intronEst.sql 2019-06-05 10:42 2.1K intronEst.txt.gz 2019-06-05 10:42 560 microsat.sql 2019-06-05 10:42 1.5K microsat.txt.gz 2019-06-05 10:42 2.3M mrnaOrientInfo.sql 2019-06-05 10:42 1.8K mrnaOrientInfo.txt.gz 2019-06-05 10:42 848K nestedRepeats.sql 2019-06-05 10:42 1.9K nestedRepeats.txt.gz 2019-06-05 10:42 8.9M netHg38.sql 2019-06-05 10:42 2.1K netHg38.txt.gz 2019-06-05 10:42 54M netMm10.sql 2019-06-05 10:21 2.1K netMm10.txt.gz 2019-06-05 10:21 80M refFlat.sql 2019-06-05 10:21 1.7K refFlat.txt.gz 2019-06-05 10:21 39K refGene.sql 2019-06-05 10:21 1.9K refGene.txt.gz 2019-06-05 10:21 43K refSeqAli.sql 2019-06-05 10:30 2.1K refSeqAli.txt.gz 2019-06-05 10:30 43K rmsk.sql 2019-06-05 10:41 1.9K rmsk.txt.gz 2019-06-05 10:42 107M simpleRepeat.sql 2019-06-05 10:42 1.9K simpleRepeat.txt.gz 2019-06-05 10:42 23M tableDescriptions.sql 2021-01-14 06:34 1.4K tableDescriptions.txt.gz 2021-01-14 06:34 5.6K tableList.sql 2021-05-16 03:03 1.6K tableList.txt.gz 2021-05-16 03:03 2.7K tandemDups.sql 2019-06-05 10:42 1.8K tandemDups.txt.gz 2019-06-05 10:42 9.6M trackDb.sql 2020-12-06 07:50 2.0K trackDb.txt.gz 2020-12-06 07:50 39K ucscToINSDC.sql 2019-06-05 10:43 1.4K ucscToINSDC.txt.gz 2019-06-05 10:43 50K ucscToRefSeq.sql 2019-06-05 10:43 1.4K ucscToRefSeq.txt.gz 2019-06-05 10:43 62 windowmaskerSdust.sql 2019-06-05 10:43 1.5K windowmaskerSdust.txt.gz 2019-06-05 10:43 123M xenoRefFlat.sql 2019-06-05 10:43 1.7K xenoRefFlat.txt.gz 2019-06-05 10:43 29M xenoRefGene.sql 2019-06-05 10:43 1.9K xenoRefGene.txt.gz 2019-06-05 10:43 32M xenoRefSeqAli.sql 2019-06-05 10:43 2.1K xenoRefSeqAli.txt.gz 2019-06-05 10:43 29M