This directory contains a dump of the UCSC genome annotation database for the
    Jul. 2013 (C_griseus_v1.0/criGri1) assembly of the chinese hamster genome
    (criGri1, Beijing Genomics Institution-Shenzhen) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    http://www.ncbi.nlm.nih.gov/genome/2791
    http://www.ncbi.nlm.nih.gov/genome/assembly/40911
    http://www.ncbi.nlm.nih.gov/bioproject/167053

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=criGri1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/criGri1/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/criGri1/database/ .
For a single file, e.g. gc5BaseBw.txt.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/criGri1/database/gc5BaseBw.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/criGri1/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/criGri1/database/gc5BaseBw.txt.gz' 
        -O gc5BaseBw.txt.gz

Please note that some files contents, such as this example gc5BaseBw.txt.gz,
will point to the data being hosted in another /gbdb/ location, which
refers to ftp://hgdownload.cse.ucsc.edu/gbdb/

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql criGri1 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql criGri1 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

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GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - all_est.sql 2014-05-08 11:56 2.1K all_est.txt.gz 2014-05-08 11:56 790 all_mrna.sql 2018-11-04 06:14 2.1K all_mrna.txt.gz 2018-11-04 06:14 2.9M augustusGene.sql 2015-07-26 11:46 1.9K augustusGene.txt.gz 2015-07-26 11:46 2.1M bigFiles.sql 2021-05-16 03:10 1.4K bigFiles.txt.gz 2021-05-16 03:10 92 chainCriGriChoV1.sql 2017-11-26 06:17 1.7K chainCriGriChoV1.txt.gz 2017-11-26 06:18 788M chainCriGriChoV1Link.sql 2017-11-26 06:20 1.6K chainCriGriChoV1Link.txt.gz 2017-11-26 06:25 3.5G chainHg19.sql 2014-05-08 11:56 1.7K chainHg19.txt.gz 2014-05-08 11:56 266M chainHg19Link.sql 2014-05-08 11:57 1.5K chainHg19Link.txt.gz 2014-05-08 11:59 1.0G chromInfo.sql 2014-05-08 12:02 1.4K chromInfo.txt.gz 2014-05-08 12:02 200K cpgIslandExt.sql 2014-05-08 12:03 1.7K cpgIslandExt.txt.gz 2014-05-08 12:03 290K cpgIslandExtUnmasked.sql 2014-05-08 12:03 1.7K cpgIslandExtUnmasked.txt.gz 2014-05-08 12:03 309K crisprRanges.sql 2017-08-20 09:02 1.4K crisprRanges.txt.gz 2017-08-20 09:02 2.1M crisprTargets.sql 2017-08-20 09:02 1.3K crisprTargets.txt.gz 2017-08-20 09:02 61 cytoBandIdeo.sql 2014-05-08 12:03 1.5K cytoBandIdeo.txt.gz 2014-05-08 12:03 185K estOrientInfo.sql 2014-05-08 12:03 1.8K estOrientInfo.txt.gz 2014-05-08 12:03 278 gap.sql 2014-05-08 12:03 1.6K gap.txt.gz 2014-05-08 12:03 2.0M gbLoaded.sql 2020-08-18 20:53 1.6K gbLoaded.txt.gz 2020-08-18 20:53 65K gc5BaseBw.sql 2014-05-08 12:03 1.3K gc5BaseBw.txt.gz 2014-05-08 12:03 66 genscan.sql 2014-05-08 12:03 1.7K genscan.txt.gz 2014-05-08 12:03 3.0M gold.sql 2014-05-08 12:03 1.7K gold.txt.gz 2014-05-08 12:03 3.0M grp.sql 2014-05-08 12:03 1.3K grp.txt.gz 2014-05-08 12:03 206 hgFindSpec.sql 2020-10-25 07:50 1.7K hgFindSpec.txt.gz 2020-10-25 07:50 650 history.sql 2014-05-08 12:03 1.6K history.txt.gz 2014-05-08 12:03 466 intronEst.sql 2014-05-08 11:56 2.1K intronEst.txt.gz 2014-05-08 11:56 533 locusName.sql 2017-08-20 09:02 1.5K locusName.txt.gz 2017-08-20 09:02 9.1M microsat.sql 2015-08-23 12:50 1.5K microsat.txt.gz 2015-08-23 12:50 2.0M mrnaOrientInfo.sql 2020-05-06 06:16 1.8K mrnaOrientInfo.txt.gz 2020-05-06 06:16 802K nestedRepeats.sql 2014-05-08 11:57 1.9K nestedRepeats.txt.gz 2014-05-08 11:57 8.9M netCriGriChoV1.sql 2017-11-26 06:38 2.1K netCriGriChoV1.txt.gz 2017-11-26 06:38 16M netHg19.sql 2014-05-08 12:02 2.1K netHg19.txt.gz 2014-05-08 12:02 51M refFlat.sql 2020-08-18 20:36 1.7K refFlat.txt.gz 2020-08-18 20:36 36K refGene.sql 2020-08-18 20:36 1.9K refGene.txt.gz 2020-08-18 20:36 39K refSeqAli.sql 2020-05-06 06:20 2.1K refSeqAli.txt.gz 2020-05-06 06:20 44K rmsk.sql 2014-05-08 12:03 1.9K rmsk.txt.gz 2014-05-08 12:03 101M simpleRepeat.sql 2014-05-08 12:03 1.9K simpleRepeat.txt.gz 2014-05-08 12:03 23M tableDescriptions.sql 2019-07-21 03:41 1.4K tableDescriptions.txt.gz 2019-07-21 03:41 5.2K tableList.sql 2021-05-16 03:10 1.6K tableList.txt.gz 2021-05-16 03:10 2.7K trackDb.sql 2020-10-23 00:49 2.0K trackDb.txt.gz 2020-10-23 00:49 39K ucscToINSDC.sql 2014-05-08 12:03 1.4K ucscToINSDC.txt.gz 2014-05-08 12:03 307K windowmaskerSdust.sql 2014-05-08 12:03 1.5K windowmaskerSdust.txt.gz 2014-05-08 12:04 84M xenoMrna.sql 2018-07-29 05:38 2.1K xenoMrna.txt.gz 2018-07-29 05:38 33 xenoRefFlat.sql 2020-08-18 20:53 1.7K xenoRefFlat.txt.gz 2020-08-18 20:53 38M xenoRefGene.sql 2020-08-18 20:40 1.9K xenoRefGene.txt.gz 2020-08-18 20:40 42M xenoRefSeqAli.sql 2020-08-18 20:53 2.1K xenoRefSeqAli.txt.gz 2020-08-18 20:53 44M