This directory contains a dump of the UCSC genome annotation
database for the Mar. 2005 v2.0 assembly (UCSC version ci2)
of the C. intestinalis genome from the US DOE Joint Genome
Institute (JGI).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ci2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ci2/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
To view restrictions on the use of the v1.0 data, see the JGI data
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-21 07:25 8.9M
xenoRefSeqAli.sql 2020-08-21 07:25 2.1K
xenoRefGene.txt.gz 2020-08-21 07:25 8.6M
xenoRefGene.sql 2020-08-21 07:25 1.9K
xenoRefFlat.txt.gz 2020-08-21 07:25 7.8M
xenoRefFlat.sql 2020-08-21 07:25 1.7K
xenoMrna.txt.gz 2020-08-21 07:02 94M
xenoMrna.sql 2020-08-21 07:02 2.1K
trackDb_pushedout.txt.gz 2021-12-27 12:21 19K
trackDb_pushedout.sql 2021-12-27 12:21 2.1K
trackDb.txt.gz 2023-03-28 13:47 19K
trackDb.sql 2023-03-28 13:47 2.1K
tableList.txt.gz 2024-04-14 03:27 2.6K
tableList.sql 2024-04-14 03:27 1.6K
tableDescriptions.txt.gz 2024-04-13 02:03 5.3K
tableDescriptions.sql 2024-04-13 02:03 1.5K
simpleRepeat.txt.gz 2005-09-09 11:44 1.2M
simpleRepeat.sql 2013-10-01 12:48 1.1K
rmsk.txt.gz 2005-09-09 11:44 4.1M
rmsk.sql 2013-10-01 12:48 1.0K
refSeqAli.txt.gz 2019-07-28 04:39 101K
refSeqAli.sql 2019-07-28 04:39 2.1K
refGene.txt.gz 2020-08-21 07:18 94K
refGene.sql 2020-08-21 07:18 1.9K
refFlat.txt.gz 2020-08-21 07:18 86K
refFlat.sql 2020-08-21 07:18 1.7K
pubsBlatPsl.txt.gz 2012-05-07 12:56 38K
pubsBlatPsl.sql 2012-05-07 12:56 2.1K
pubsBlat.txt.gz 2012-05-07 12:56 26K
pubsBlat.sql 2012-05-07 12:56 1.9K
pubsBingBlatPsl.txt.gz 2014-01-26 09:59 37K
pubsBingBlatPsl.sql 2014-01-26 09:59 2.2K
pubsBingBlat.txt.gz 2014-01-26 09:59 67K
pubsBingBlat.sql 2014-01-26 09:59 2.4K
mrnaOrientInfo.txt.gz 2020-08-21 07:02 147K
mrnaOrientInfo.sql 2020-08-21 07:02 1.8K
microsat.txt.gz 2015-08-23 12:49 2.1K
microsat.sql 2015-08-23 12:49 1.5K
locusName.txt.gz 2016-10-30 06:26 1.6M
locusName.sql 2016-10-30 06:26 1.5K
intronEst.txt.gz 2016-06-05 09:32 27M
intronEst.sql 2016-06-05 09:32 2.1K
history.txt.gz 2005-09-09 11:44 194
history.sql 2013-10-01 12:48 533
hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 579
hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K
hgFindSpec.txt.gz 2023-03-28 13:47 620
hgFindSpec.sql 2023-03-28 13:47 1.8K
grp.txt.gz 2014-03-02 03:40 223
grp.sql 2014-03-02 03:40 1.4K
gc5Base.txt.gz 2005-09-09 11:44 710K
gc5Base.sql 2013-10-01 12:48 888
gbLoaded.txt.gz 2020-08-21 07:25 111K
gbLoaded.sql 2020-08-21 07:25 1.6K
gbDelete_tmp.txt.gz 2005-09-27 05:01 139K
gbDelete_tmp.sql 2013-10-01 12:48 322
gap.txt.gz 2005-09-09 11:42 275K
gap.sql 2013-10-01 12:48 704
estOrientInfo.txt.gz 2016-06-05 09:32 11M
estOrientInfo.sql 2016-06-05 09:32 1.8K
ensemblToGeneName.txt.gz 2011-11-13 15:37 121K
ensemblToGeneName.sql 2011-11-13 15:37 1.3K
ensemblSource.txt.gz 2011-11-13 15:39 64K
ensemblSource.sql 2011-11-13 15:39 1.3K
ensPep.txt.gz 2011-03-14 10:15 3.6M
ensPep.sql 2011-03-14 10:15 1.3K
ensGtp.txt.gz 2011-11-13 15:35 188K
ensGtp.sql 2011-11-13 15:35 1.4K
ensGene.txt.gz 2011-03-14 10:18 1.3M
ensGene.sql 2011-03-14 10:18 1.8K
crisprTargets.txt.gz 2016-10-30 06:26 59
crisprTargets.sql 2016-10-30 06:26 1.3K
crisprRanges.txt.gz 2016-10-30 06:26 367K
crisprRanges.sql 2016-10-30 06:26 1.4K
chromInfo.txt.gz 2005-09-09 11:38 35K
chromInfo.sql 2007-03-12 09:42 1.2K
bigFiles.txt.gz 2024-04-14 03:27 65
bigFiles.sql 2024-04-14 03:27 1.4K
all_mrna.txt.gz 2020-08-21 07:02 666K
all_mrna.sql 2020-08-21 07:02 2.1K
all_est.txt.gz 2016-06-05 09:31 41M
all_est.sql 2016-06-05 09:30 2.1K