This directory contains a dump of the UCSC genome annotation 
database for the Dec. 2002 v.1.0 assembly (UCSC version ci1) 
of the C. intestinalis genome from the US DOE Joint Genome 
Institute (JGI). 

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/ci1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely available for public use.

To view restrictions on the use of the v1.0 data, see the JGI data 
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
      Name                     Last modified      Size  Description
Parent Directory - all_est.sql 2016-06-05 09:29 2.4K all_est.txt.gz 2016-06-05 09:29 42M all_mrna.sql 2020-08-21 06:44 2.4K all_mrna.txt.gz 2020-08-21 06:44 675K bigFiles.sql 2021-05-02 03:10 1.4K bigFiles.txt.gz 2021-05-02 03:10 33 blastHg16KG.sql 2013-10-01 12:48 1.3K blastHg16KG.txt.gz 2004-09-28 10:06 2.0M blatCioSav1.sql 2013-10-01 12:48 1.4K blatCioSav1.txt.gz 2004-07-15 15:40 9.2M chromAlias.sql 2016-09-15 17:56 1.4K chromAlias.txt.gz 2016-09-15 17:56 12K chromInfo.sql 2013-10-01 12:48 392 chromInfo.txt.gz 2004-07-15 15:40 21K estOrientInfo.sql 2016-06-05 09:30 1.9K estOrientInfo.txt.gz 2016-06-05 09:30 12M extFile.sql 2013-10-01 12:48 441 extFile.txt.gz 2004-07-15 15:41 115 gap.sql 2013-10-01 12:48 704 gap.txt.gz 2004-07-15 15:41 61K gbDelete_tmp.sql 2013-10-01 12:48 322 gbDelete_tmp.txt.gz 2005-09-27 05:01 180K gbLoaded.sql 2020-08-21 06:59 1.7K gbLoaded.txt.gz 2020-08-21 06:59 224K gc5Base.sql 2013-10-01 12:48 887 gc5Base.txt.gz 2004-07-15 15:42 607K grp.sql 2014-03-02 03:40 1.4K grp.txt.gz 2014-03-02 03:40 223 hgFindSpec.sql 2019-11-03 03:55 1.7K hgFindSpec.txt.gz 2019-11-03 03:55 647 history.sql 2013-10-01 12:48 533 history.txt.gz 2004-07-15 15:42 934 intronEst.sql 2016-06-05 09:29 2.4K intronEst.txt.gz 2016-06-05 09:29 27M jgiGene.sql 2013-10-01 12:48 1.0K jgiGene.txt.gz 2004-07-15 15:42 1.0M jgiPep.sql 2013-10-01 12:48 318 jgiPep.txt.gz 2004-07-15 15:43 3.5M microsat.sql 2015-08-23 12:42 1.5K microsat.txt.gz 2015-08-23 12:42 1.6K mrnaOrientInfo.sql 2020-08-21 06:44 1.9K mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K refFlat.sql 2020-08-21 06:44 1.9K refFlat.txt.gz 2020-08-21 06:44 78K refGene.sql 2020-08-21 06:44 1.8K refGene.txt.gz 2020-08-21 06:44 72K refSeqAli.sql 2019-07-28 04:38 2.4K refSeqAli.txt.gz 2019-07-28 04:38 95K rmsk.sql 2013-10-01 12:48 1.0K rmsk.txt.gz 2004-07-15 15:44 3.2M seq.sql 2013-10-01 12:48 586 seq.txt.gz 2004-07-15 15:44 490K simpleRepeat.sql 2013-10-01 12:48 1.1K simpleRepeat.txt.gz 2004-07-15 15:44 790K snapGene.sql 2013-10-01 12:48 1.0K snapGene.txt.gz 2004-07-15 15:44 2.0M tableDescriptions.sql 2020-10-10 02:03 1.4K tableDescriptions.txt.gz 2020-10-10 02:03 4.4K tableList.sql 2021-05-02 03:10 1.6K tableList.txt.gz 2021-05-02 03:10 2.2K trackDb.sql 2019-11-03 03:55 2.0K trackDb.txt.gz 2019-11-03 03:55 9.8K xenoMrna.sql 2020-08-21 06:44 2.4K xenoMrna.txt.gz 2020-08-21 06:44 111M xenoRefFlat.sql 2020-08-21 06:59 1.9K xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M xenoRefGene.sql 2020-08-21 06:59 1.8K xenoRefGene.txt.gz 2020-08-21 06:59 7.8M xenoRefSeqAli.sql 2020-08-21 06:59 2.4K xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M