This directory contains a dump of the UCSC genome annotation 
database for the Mar. 2004 freeze of the C. elegans genome from 
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS120/CHROMOSOMES/). 

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=ce2
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

-----------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, 
then go to the directory goldenPath/ce2/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

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All the tables in this directory are freely available for public use.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
      Name                        Last modified      Size  Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-08-21 06:44 1.7M xenoRefSeqAli.sql 2020-08-21 06:44 2.1K xenoRefGene.txt.gz 2020-08-21 06:44 1.7M xenoRefGene.sql 2020-08-21 06:44 1.9K xenoRefFlat.txt.gz 2020-08-21 06:44 1.5M xenoRefFlat.sql 2020-08-21 06:44 1.7K wormP2P.txt.gz 2005-06-16 04:54 473K wormP2P.sql 2013-10-01 12:48 353 wabaCbr.txt.gz 2004-05-10 10:51 130M wabaCbr.sql 2013-10-01 12:48 832 twinscanPep.txt.gz 2004-05-10 10:48 4.3M twinscanPep.sql 2013-10-01 12:48 337 twinscan.txt.gz 2004-05-10 10:48 1.1M twinscan.sql 2013-10-01 12:48 1.0K trackDb_pushedout.txt.gz 2021-12-27 12:21 24K trackDb_pushedout.sql 2021-12-27 12:21 2.1K trackDb.txt.gz 2023-03-28 13:47 24K trackDb.sql 2023-03-28 13:47 2.1K tableList.txt.gz 2024-03-24 03:39 6.7K tableList.sql 2024-03-24 03:39 1.6K tableDescriptions.txt.gz 2024-03-23 02:03 6.4K tableDescriptions.sql 2024-03-23 02:03 1.4K simpleRepeat.txt.gz 2004-05-10 10:48 822K simpleRepeat.sql 2013-10-01 12:48 1.1K seq.txt.gz 2004-05-10 10:48 232K seq.sql 2013-10-01 12:48 596 sangerToRefSeq.txt.gz 2004-06-07 07:35 110K sangerToRefSeq.sql 2013-10-01 12:48 379 sangerToPfam.txt.gz 2004-06-07 07:35 69K sangerToPfam.sql 2013-10-01 12:48 368 sangerToKim.txt.gz 2004-06-07 07:35 100K sangerToKim.sql 2013-10-01 12:48 373 sangerPep.txt.gz 2004-05-27 05:10 4.8M sangerPep.sql 2013-10-01 12:48 333 sangerLinks.txt.gz 2004-05-27 05:10 539K sangerLinks.sql 2013-10-01 12:48 426 sangerIsoforms.txt.gz 2004-06-07 07:35 106K sangerIsoforms.sql 2013-10-01 12:48 403 sangerGenefinder.txt.gz 2004-05-12 05:11 1.2M sangerGenefinder.sql 2013-10-01 12:48 1.1K sangerGene.txt.gz 2004-05-27 05:10 1.2M sangerGene.sql 2013-10-01 12:48 833 sangerCanonical.txt.gz 2004-06-07 07:35 341K sangerCanonical.sql 2013-10-01 12:48 610 sangerBlastTab.txt.gz 2004-06-07 07:35 19M sangerBlastTab.sql 2013-10-01 12:48 806 rnaCluster.txt.gz 2004-05-10 10:48 349K rnaCluster.sql 2013-10-01 12:48 953 rnBlastTab.txt.gz 2006-07-22 11:29 236K rnBlastTab.sql 2006-07-22 11:29 1.6K refSeqAli.txt.gz 2020-08-21 06:44 2.7M refSeqAli.sql 2020-08-21 06:44 2.4K refGene.txt.gz 2020-08-21 06:36 1.9M refGene.sql 2020-08-21 06:36 1.8K refFlat.txt.gz 2020-08-21 06:39 2.1M refFlat.sql 2020-08-21 06:39 1.9K picTar.txt.gz 2006-04-28 03:42 117K picTar.sql 2013-10-01 12:48 747 phastConsElements.txt.gz 2004-09-28 10:05 1.0M phastConsElements.sql 2013-10-01 12:48 651 phastCons.txt.gz 2004-09-28 10:05 2.3M phastCons.sql 2013-10-01 12:48 891 orfToGene.txt.gz 2004-05-10 10:48 103K orfToGene.sql 2013-10-01 12:48 371 netCb1.txt.gz 2004-05-10 10:48 4.4M netCb1.sql 2013-10-01 12:48 1.3K mrnaOrientInfo.txt.gz 2020-08-21 06:44 828K mrnaOrientInfo.sql 2020-08-21 06:44 1.9K mmBlastTab.txt.gz 2006-05-26 05:31 280K mmBlastTab.sql 2013-10-01 12:48 798 microsat.txt.gz 2015-08-23 12:09 3.0K microsat.sql 2015-08-23 12:09 1.5K miRNA.txt.gz 2004-05-10 10:48 2.3K miRNA.sql 2013-10-01 12:48 776 kimExpDistance.txt.gz 2004-06-07 07:34 118M kimExpDistance.sql 2013-10-01 12:48 390 history.txt.gz 2010-07-04 14:53 1.0K history.sql 2010-07-04 14:53 1.5K hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 1.0K hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K hgFindSpec.txt.gz 2023-03-28 13:47 1.1K hgFindSpec.sql 2023-03-28 13:47 1.8K hgBlastTab.txt.gz 2007-04-08 09:42 121K hgBlastTab.sql 2007-04-08 09:42 1.6K grp.txt.gz 2014-03-02 03:40 223 grp.sql 2014-03-02 03:40 1.4K geneidPep.txt.gz 2005-03-26 05:08 4.8M geneidPep.sql 2013-10-01 12:48 324 geneid.txt.gz 2005-03-26 05:08 1.3M geneid.sql 2013-10-01 12:48 1.0K gc5Base.txt.gz 2004-05-10 10:48 385K gc5Base.sql 2013-10-01 12:48 896 gbLoaded.txt.gz 2020-08-21 06:44 217K gbLoaded.sql 2020-08-21 06:44 1.7K extFile.txt.gz 2004-09-28 10:05 295 extFile.sql 2013-10-01 12:48 441 estOrientInfo.txt.gz 2016-06-05 09:18 4.0M estOrientInfo.sql 2016-06-05 09:18 1.9K drBlastTab.txt.gz 2010-04-04 10:26 291K drBlastTab.sql 2010-04-04 10:26 1.8K dmBlastTab.txt.gz 2007-08-30 18:04 111K dmBlastTab.sql 2007-08-30 18:04 1.6K chromInfo.txt.gz 2004-05-10 10:48 140 chromInfo.sql 2013-10-01 12:48 401 chrX_wabaCbr.txt.gz 2004-05-10 10:48 1.0M chrX_wabaCbr.sql 2013-10-01 12:48 571 chrX_rmsk.txt.gz 2004-05-10 10:48 289K chrX_rmsk.sql 2013-10-01 12:48 1.0K chrX_mrna.txt.gz 2020-08-21 06:07 47K chrX_mrna.sql 2020-08-21 06:07 2.4K chrX_intronEst.txt.gz 2016-06-05 09:18 1.4M chrX_intronEst.sql 2016-06-05 09:18 2.4K chrX_gold.txt.gz 2004-05-10 10:48 11K chrX_gold.sql 2013-10-01 12:48 786 chrX_gap.txt.gz 2004-05-10 10:48 33 chrX_gap.sql 2013-10-01 12:48 709 chrX_est.txt.gz 2016-06-05 09:18 1.8M chrX_est.sql 2016-06-05 09:18 2.4K chrX_chainSelfLink.txt.gz 2004-05-21 05:06 3.3M chrX_chainSelfLink.sql 2013-10-01 12:48 582 chrX_chainSelf.txt.gz 2004-05-21 05:06 874K chrX_chainSelf.sql 2013-10-01 12:48 859 chrX_chainCb1Link.txt.gz 2004-05-10 10:48 5.3M chrX_chainCb1Link.sql 2013-10-01 12:48 580 chrX_chainCb1.txt.gz 2004-05-10 10:48 1.7M chrX_chainCb1.sql 2013-10-01 12:48 857 chrX_blastzCb1.txt.gz 2004-05-10 10:48 6.0M chrX_blastzCb1.sql 2013-10-01 12:48 1.3K chrV_wabaCbr.txt.gz 2004-05-10 10:48 1.8M chrV_wabaCbr.sql 2013-10-01 12:48 571 chrV_rmsk.txt.gz 2004-05-10 10:48 456K chrV_rmsk.sql 2013-10-01 12:48 1.0K chrV_mrna.txt.gz 2018-01-07 06:38 40K chrV_mrna.sql 2018-01-07 06:38 2.4K chrV_intronEst.txt.gz 2016-06-05 09:18 1.8M chrV_intronEst.sql 2016-06-05 09:18 2.4K chrV_gold.txt.gz 2004-05-10 10:48 12K chrV_gold.sql 2013-10-01 12:48 786 chrV_gap.txt.gz 2004-05-10 10:48 33 chrV_gap.sql 2013-10-01 12:48 709 chrV_est.txt.gz 2016-06-05 09:18 2.2M chrV_est.sql 2016-06-05 09:18 2.4K chrV_chainSelfLink.txt.gz 2004-05-21 05:06 10M chrV_chainSelfLink.sql 2013-10-01 12:48 582 chrV_chainSelf.txt.gz 2004-05-21 05:06 1.5M chrV_chainSelf.sql 2013-10-01 12:48 859 chrV_chainCb1Link.txt.gz 2004-05-10 10:47 13M chrV_chainCb1Link.sql 2013-10-01 12:48 580 chrV_chainCb1.txt.gz 2004-05-10 10:47 5.2M chrV_chainCb1.sql 2013-10-01 12:48 857 chrV_blastzCb1.txt.gz 2004-05-10 10:47 15M chrV_blastzCb1.sql 2013-10-01 12:48 1.3K chrM_wabaCbr.txt.gz 2004-05-10 10:47 412 chrM_wabaCbr.sql 2013-10-01 12:48 571 chrM_rmsk.txt.gz 2004-05-10 10:47 662 chrM_rmsk.sql 2013-10-01 12:48 1.0K chrM_mrna.txt.gz 2008-03-18 03:55 34 chrM_mrna.sql 2008-03-18 03:55 2.2K chrM_intronEst.txt.gz 2008-03-18 03:55 39 chrM_intronEst.sql 2008-03-18 03:55 2.2K chrM_gold.txt.gz 2004-05-10 10:47 64 chrM_gold.sql 2013-10-01 12:48 786 chrM_gap.txt.gz 2004-05-10 10:47 33 chrM_gap.sql 2013-10-01 12:48 709 chrM_est.txt.gz 2016-06-05 09:18 50K chrM_est.sql 2016-06-05 09:18 2.4K chrM_chainCb1Link.txt.gz 2004-05-10 10:47 2.0K chrM_chainCb1Link.sql 2013-10-01 12:48 580 chrM_chainCb1.txt.gz 2004-05-10 10:47 393 chrM_chainCb1.sql 2013-10-01 12:48 857 chrM_blastzCb1.txt.gz 2004-05-10 10:47 2.1K chrM_blastzCb1.sql 2013-10-01 12:48 1.3K chrI_wabaCbr.txt.gz 2004-05-10 10:46 1.5M chrI_wabaCbr.sql 2013-10-01 12:48 571 chrI_rmsk.txt.gz 2004-05-10 10:46 409K chrI_rmsk.sql 2013-10-01 12:48 1.0K chrI_mrna.txt.gz 2020-05-07 17:18 40K chrI_mrna.sql 2020-05-07 17:18 2.4K chrI_intronEst.txt.gz 2016-06-05 09:18 2.1M chrI_intronEst.sql 2016-06-05 09:18 2.4K chrI_gold.txt.gz 2004-05-10 10:46 7.9K chrI_gold.sql 2013-10-01 12:48 786 chrI_gap.txt.gz 2004-05-10 10:46 33 chrI_gap.sql 2013-10-01 12:48 709 chrI_est.txt.gz 2016-06-05 09:18 2.9M chrI_est.sql 2016-06-05 09:18 2.4K chrI_chainSelfLink.txt.gz 2004-05-21 05:05 7.9M chrI_chainSelfLink.sql 2013-10-01 12:48 582 chrI_chainSelf.txt.gz 2004-05-21 05:06 1.1M chrI_chainSelf.sql 2013-10-01 12:48 859 chrI_chainCb1Link.txt.gz 2004-06-01 07:23 8.2M chrI_chainCb1Link.sql 2013-10-01 12:48 571 chrI_chainCb1.txt.gz 2004-05-10 10:46 3.2M chrI_chainCb1.sql 2013-10-01 12:48 857 chrI_blastzCb1.txt.gz 2004-05-10 10:46 9.6M chrI_blastzCb1.sql 2013-10-01 12:48 1.3K chrIV_wabaCbr.txt.gz 2004-05-10 10:46 2.5M chrIV_wabaCbr.sql 2013-10-01 12:48 573 chrIV_rmsk.txt.gz 2004-05-10 10:46 381K chrIV_rmsk.sql 2013-10-01 12:48 1.0K chrIV_mrna.txt.gz 2020-08-21 06:07 112K chrIV_mrna.sql 2020-08-21 06:07 2.4K chrIV_intronEst.txt.gz 2016-06-05 09:18 1.7M chrIV_intronEst.sql 2016-06-05 09:18 2.4K chrIV_gold.txt.gz 2004-05-10 10:46 8.7K chrIV_gold.sql 2013-10-01 12:48 788 chrIV_gap.txt.gz 2004-05-10 10:46 34 chrIV_gap.sql 2013-10-01 12:48 711 chrIV_est.txt.gz 2016-06-05 09:18 2.2M chrIV_est.sql 2016-06-05 09:18 2.4K chrIV_chainSelfLink.txt.gz 2004-05-21 05:05 7.0M chrIV_chainSelfLink.sql 2013-10-01 12:48 584 chrIV_chainSelf.txt.gz 2004-05-21 05:06 1.3M chrIV_chainSelf.sql 2013-10-01 12:48 861 chrIV_chainCb1Link.txt.gz 2004-05-10 10:45 10M chrIV_chainCb1Link.sql 2013-10-01 12:48 582 chrIV_chainCb1.txt.gz 2004-05-10 10:45 3.8M chrIV_chainCb1.sql 2013-10-01 12:48 859 chrIV_blastzCb1.txt.gz 2004-05-10 10:45 11M chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K chrII_wabaCbr.txt.gz 2004-05-10 10:45 1.6M chrII_wabaCbr.sql 2013-10-01 12:48 573 chrII_rmsk.txt.gz 2004-05-10 10:45 347K chrII_rmsk.sql 2013-10-01 12:48 1.0K chrII_mrna.txt.gz 2020-08-21 06:07 30K chrII_mrna.sql 2020-08-21 06:07 2.4K chrII_intronEst.txt.gz 2016-06-05 09:18 2.1M chrII_intronEst.sql 2016-06-05 09:18 2.4K chrII_gold.txt.gz 2004-05-10 10:45 8.7K chrII_gold.sql 2013-10-01 12:48 788 chrII_gap.txt.gz 2004-05-10 10:45 93 chrII_gap.sql 2013-10-01 12:48 711 chrII_est.txt.gz 2016-06-05 09:18 2.5M chrII_est.sql 2016-06-05 09:18 2.4K chrII_chainSelfLink.txt.gz 2004-05-21 05:05 9.3M chrII_chainSelfLink.sql 2013-10-01 12:48 584 chrII_chainSelf.txt.gz 2004-05-21 05:06 1.3M chrII_chainSelf.sql 2013-10-01 12:48 861 chrII_chainCb1Link.txt.gz 2004-05-10 10:44 9.1M chrII_chainCb1Link.sql 2013-10-01 12:48 582 chrII_chainCb1.txt.gz 2004-05-10 10:44 3.5M chrII_chainCb1.sql 2013-10-01 12:48 859 chrII_blastzCb1.txt.gz 2004-05-10 10:44 10M chrII_blastzCb1.sql 2013-10-01 12:48 1.3K chrIII_wabaCbr.txt.gz 2004-05-10 10:44 2.2M chrIII_wabaCbr.sql 2013-10-01 12:48 575 chrIII_rmsk.txt.gz 2004-05-10 10:44 392K chrIII_rmsk.sql 2013-10-01 12:48 1.1K chrIII_mrna.txt.gz 2020-08-21 06:07 40K chrIII_mrna.sql 2020-08-21 06:07 2.4K chrIII_intronEst.txt.gz 2016-06-05 09:18 1.9M chrIII_intronEst.sql 2016-06-05 09:18 2.4K chrIII_gold.txt.gz 2004-05-10 10:44 6.9K chrIII_gold.sql 2013-10-01 12:48 790 chrIII_gap.txt.gz 2004-05-10 10:44 123 chrIII_gap.sql 2013-10-01 12:48 713 chrIII_est.txt.gz 2016-06-05 09:18 2.3M chrIII_est.sql 2016-06-05 09:18 2.4K chrIII_chainSelfLink.txt.gz 2004-05-21 05:05 11M chrIII_chainSelfLink.sql 2013-10-01 12:48 586 chrIII_chainSelf.txt.gz 2004-05-21 05:06 1.4M chrIII_chainSelf.sql 2013-10-01 12:48 863 chrIII_chainCb1Link.txt.gz 2004-05-10 10:43 8.6M chrIII_chainCb1Link.sql 2013-10-01 12:48 584 chrIII_chainCb1.txt.gz 2004-05-10 10:43 3.6M chrIII_chainCb1.sql 2013-10-01 12:48 861 chrIII_blastzCb1.txt.gz 2004-05-10 10:43 10M chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K c_briggsae_pwMaf.txt.gz 2004-09-28 10:05 1.6M c_briggsae_pwMaf.sql 2013-10-01 12:48 666 blatFr1.txt.gz 2004-05-10 10:43 1.6M blatFr1.sql 2013-10-01 12:48 1.3K blastHg16KG.txt.gz 2004-09-28 10:05 600K blastHg16KG.sql 2013-10-01 12:48 1.3K bigFiles.txt.gz 2024-03-24 03:39 33 bigFiles.sql 2024-03-24 03:39 1.4K axtNetCb1.txt.gz 2004-05-10 10:43 1.6M axtNetCb1.sql 2013-10-01 12:48 661 augustusGene.txt.gz 2015-07-26 11:22 1.3M augustusGene.sql 2015-07-26 11:22 1.9K all_mrna.txt.gz 2020-08-21 06:07 309K all_mrna.sql 2020-08-21 06:07 2.4K all_est.txt.gz 2016-06-05 09:18 14M all_est.sql 2016-06-05 09:18 2.4K