This directory contains zipped multiple alignments of the 
human (hg17, May 2004) and mouse (mm5, May 2004) assemblies 
to the dog (canFam1, Jul. 2004) assembly. The chr*.maf.gz 
files each contain all the alignments to that particular 
dog chromosome.  

The hg17 and mm5 directories contained gzipped alignment files 
for the pairwise (blastz) alignments used in the multiple alignment.

For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/canFam1/multizHg17Mm5/. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the tables in this directory are freely usable for any 
purpose.

The dog genome sequence is made freely available by the Dog Genome Sequencing
Project. Please cite the following publication when using these data:

Lindblad-Toh K, et al. Genome sequence, comparative analysis and haplotype
structure of the domestic dog. Nature. 2005 Dec 8;438:803-19.

      Name                    Last modified      Size  Description
Parent Directory - hg17/ 2004-07-21 16:15 - mm5/ 2004-07-21 17:03 - md5sum.txt 2004-07-21 17:18 6.0K chrM.maf.gz 2004-07-21 12:33 15K chrUn.maf.gz 2004-07-21 12:34 13M chr38.maf.gz 2004-07-21 12:17 15M chr35.maf.gz 2004-07-21 12:14 17M chr33.maf.gz 2004-07-21 12:11 21M chr36.maf.gz 2004-07-21 12:15 21M chr37.maf.gz 2004-07-21 12:16 21M chr26.maf.gz 2004-07-21 11:41 23M chr31.maf.gz 2004-07-21 12:09 23M chr32.maf.gz 2004-07-21 12:10 24M chr29.maf.gz 2004-07-21 11:53 26M chr30.maf.gz 2004-07-21 12:05 26M chr34.maf.gz 2004-07-21 12:13 27M chr28.maf.gz 2004-07-21 11:49 27M chr27.maf.gz 2004-07-21 11:45 28M chr21.maf.gz 2004-07-21 11:28 31M chr25.maf.gz 2004-07-21 11:38 32M chr19.maf.gz 2004-07-21 11:20 32M chr24.maf.gz 2004-07-21 11:35 32M chr23.maf.gz 2004-07-21 11:33 33M chr9.maf.gz 2004-07-21 12:33 35M chr16.maf.gz 2004-07-21 11:11 35M chr20.maf.gz 2004-07-21 11:26 38M chr22.maf.gz 2004-07-21 11:31 38M chr18.maf.gz 2004-07-21 11:17 40M chr14.maf.gz 2004-07-21 11:05 40M chr13.maf.gz 2004-07-21 11:02 40M chr15.maf.gz 2004-07-21 11:09 42M chr17.maf.gz 2004-07-21 11:14 42M chr10.maf.gz 2004-07-21 10:52 45M chr12.maf.gz 2004-07-21 10:59 45M chr8.maf.gz 2004-07-21 12:31 48M chr11.maf.gz 2004-07-21 10:56 48M chr6.maf.gz 2004-07-21 12:26 48M chr7.maf.gz 2004-07-21 12:29 53M chr2.maf.gz 2004-07-21 11:24 55M chr4.maf.gz 2004-07-21 12:21 58M chr3.maf.gz 2004-07-21 12:02 58M chr5.maf.gz 2004-07-21 12:24 60M chrX.maf.gz 2004-07-21 12:38 61M chr1.maf.gz 2004-07-21 10:49 75M