This directory contains reciprocal-best netted chains for braFlo1-galGal3.

 - braFlo1.galGal3.rbest.net.gz: braFlo1-referenced recip.best net to galGal3.
 - braFlo1.galGal3.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from braFlo1 to galGal3 through the recip.best net.

 - galGal3.braFlo1.rbest.net.gz: galGal3-referenced recip.best net.
 - galGal3.braFlo1.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/chr*.braFlo1.galGal3.rbest.axt.gz: chained and netted alignments,
   i.e. the best chains in the Lancelet genome, with gaps in the best
   chains filled in by next-best chains where possible.  Only alignments
   that are reciprocal best are kept.  The axt format is
   described in http://genome.ucsc.edu/goldenPath/help/axt.html .
      Name                           Last modified      Size  Description
Parent Directory - axtRBestNet/ 2008-06-03 12:49 - braFlo1.galGal3.rbest.chain.gz 2008-04-17 12:14 1.3M braFlo1.galGal3.rbest.net.gz 2008-04-17 12:14 2.2M galGal3.braFlo1.rbest.chain.gz 2008-04-17 12:14 1.3M galGal3.braFlo1.rbest.net.gz 2008-04-17 12:14 2.2M md5sum.txt 2008-04-17 12:14 256