This directory contains the October 2006 assembly of the cow genome
(bosTau4, Baylor Release 4.0).  This assembly was produced by the 
Baylor College of Medicine Human Genome Sequencing Center.
For more information on the cow genome, see the project website:
<A HREF="http://www.hgsc.bcm.tmc.edu/projects/bovine/"
TARGET=_blank>Baylor College of Medicine Human Genome Sequencing Center</A>

Files included in this directory:

chr*.fa.gz: gzip compressed FASTA sequence of each chromosome.
    Repeats (from RepeatMasker (-s) and Tandem Repeat Finder) 
    are in lower case while non-repeating sequence is in upper case.
    RepeatMasker version: Jan 11 2008 (open-3-1-9)
    libraries:  CC   RELEASE 20071204;

chrUn.scaffolds.fa.gz: components of Baylor ChrUn artificial chromosome
    treated as separate scaffolds. Treatment is otherwise the same
    as for chr*.fa.gz above.

md5sum.txt - MD5 checksum of these files to verify correct transmission

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If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, 
then go to the directory goldenPath/bosTau4/chromosomes. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)


To unpack the fa.gz files:
    gunzip <file>.fa.gz

Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
      Name                    Last modified      Size  Description
Parent Directory - md5sum.txt 2008-04-02 19:09 1.4K chrUn.scaffolds.fa.gz 2008-04-02 19:04 82M chrM.fa.gz 2008-04-02 18:40 5.3K chr29.fa.gz 2008-04-02 18:40 15M chr28.fa.gz 2008-04-02 18:40 14M chr27.fa.gz 2008-04-02 18:40 14M chr26.fa.gz 2008-04-02 18:40 15M chr25.fa.gz 2008-04-02 18:39 13M chr24.fa.gz 2008-04-02 18:39 19M chr23.fa.gz 2008-04-02 18:39 16M chr22.fa.gz 2008-04-02 18:39 19M chr21.fa.gz 2008-04-02 18:39 20M chr20.fa.gz 2008-04-02 18:39 22M chr19.fa.gz 2008-04-02 18:39 19M chr18.fa.gz 2008-04-02 18:39 19M chr17.fa.gz 2008-04-02 18:39 22M chr16.fa.gz 2008-04-02 18:39 23M chr15.fa.gz 2008-04-02 18:39 25M chr14.fa.gz 2008-04-02 18:39 24M chr13.fa.gz 2008-04-02 18:39 25M chr12.fa.gz 2008-04-02 18:39 25M chr11.fa.gz 2008-04-02 18:39 33M chr10.fa.gz 2008-04-02 18:39 32M chr9.fa.gz 2008-04-02 18:39 32M chr8.fa.gz 2008-04-02 18:39 34M chr7.fa.gz 2008-04-02 18:39 33M chr6.fa.gz 2008-04-02 18:39 35M chr5.fa.gz 2008-04-02 18:39 37M chr4.fa.gz 2008-04-02 18:39 37M chr3.fa.gz 2008-04-02 18:39 38M chr2.fa.gz 2008-04-02 18:39 42M chr1.fa.gz 2008-04-02 18:39 47M chrX.fa.gz 2008-04-02 18:39 26M