This directory contains a dump of the UCSC genome annotation database 
for the Sep. 2004 cow genome assembled by the Baylor College of Medicine 
Human Genome Sequencing Center (bosTau1, BCM HGSC Btau_1.0). For more 
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website. 
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/bosTau1/database/. To download multiple files, use the 
"mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.

      Name                     Last modified      Size  Description
Parent Directory - all_est.sql 2008-03-25 13:33 2.2K all_est.txt.gz 2008-03-25 13:34 55M all_mrna.sql 2008-09-09 03:33 2.2K all_mrna.txt.gz 2008-09-09 03:33 1.9M author.sql 2008-09-09 03:30 1.2K author.txt.gz 2008-09-09 03:30 4.8M blastHg17KG.sql 2008-03-25 13:35 2.2K blastHg17KG.txt.gz 2008-03-25 13:35 2.4M cds.sql 2008-09-09 03:33 1.2K cds.txt.gz 2008-09-09 03:33 1.5M cell.sql 2008-05-06 03:29 1.2K cell.txt.gz 2008-05-06 03:29 1.1K chainHg17.sql 2008-03-25 13:35 1.7K chainHg17.txt.gz 2008-03-25 13:37 133M chainHg17Link.sql 2008-03-25 13:40 1.4K chainHg17Link.txt.gz 2008-03-25 13:51 689M chainMm6.sql 2008-03-25 14:05 1.7K chainMm6.txt.gz 2008-03-25 14:06 67M chainMm6Link.sql 2008-03-25 14:07 1.4K chainMm6Link.txt.gz 2008-03-25 14:15 437M chromInfo.sql 2008-03-25 14:25 1.2K chromInfo.txt.gz 2008-03-25 14:25 2.0M contigAcc.sql 2008-03-25 14:25 1.2K contigAcc.txt.gz 2008-03-25 14:25 3.7M cpgIslandExt.sql 2008-03-25 14:25 1.6K cpgIslandExt.txt.gz 2008-03-25 14:25 721K description.sql 2008-09-09 03:31 1.2K description.txt.gz 2008-09-09 03:31 9.9M development.sql 2008-03-25 14:26 1.2K development.txt.gz 2008-03-25 14:26 1.9K estOrientInfo.sql 2008-03-25 14:26 1.7K estOrientInfo.txt.gz 2008-03-25 14:26 19M gap.sql 2008-03-25 14:26 1.6K gap.txt.gz 2008-03-25 14:26 3.2M gbCdnaInfo.sql 2008-09-09 03:33 2.6K gbCdnaInfo.txt.gz 2008-09-09 03:34 21M gbDelete_tmp.sql 2008-03-25 14:27 1.2K gbDelete_tmp.txt.gz 2008-03-25 14:27 157K gbExtFile.sql 2008-09-09 03:31 1.2K gbExtFile.txt.gz 2008-09-09 03:31 2.0K gbLoaded.sql 2008-09-09 03:31 1.5K gbLoaded.txt.gz 2008-09-09 03:31 57K gbMiscDiff.sql 2008-08-19 03:40 1.3K gbMiscDiff.txt.gz 2008-08-19 03:40 2.9K gbSeq.sql 2008-09-09 03:32 1.6K gbSeq.txt.gz 2008-09-09 03:32 28M gbStatus.sql 2008-09-09 03:30 1.9K gbStatus.txt.gz 2008-09-09 03:31 13M gbWarn.sql 2008-05-06 03:32 1.2K gbWarn.txt.gz 2008-05-06 03:32 31 gc5Base.sql 2008-03-25 14:29 1.7K gc5Base.txt.gz 2008-03-25 14:29 17M geneName.sql 2008-09-09 03:31 1.2K geneName.txt.gz 2008-09-09 03:31 3.2M geneid.sql 2008-03-25 14:29 1.9K geneid.txt.gz 2008-03-25 14:30 10M geneidPep.sql 2008-03-25 14:30 1.1K geneidPep.txt.gz 2008-03-25 14:30 12M genscan.sql 2008-03-25 14:30 1.6K genscan.txt.gz 2008-03-25 14:30 3.2M genscanPep.sql 2008-03-25 14:30 1.2K genscanPep.txt.gz 2008-03-25 14:30 10M gold.sql 2008-03-25 14:30 1.6K gold.txt.gz 2008-03-25 14:30 10M grp.sql 2008-03-25 14:30 1.2K grp.txt.gz 2008-03-25 14:30 204 hgFindSpec.sql 2008-03-25 14:30 1.7K hgFindSpec.txt.gz 2008-03-25 14:30 603 history.sql 2008-03-25 14:30 1.4K history.txt.gz 2008-03-25 14:30 312 imageClone.sql 2008-09-09 03:30 1.3K imageClone.txt.gz 2008-09-09 03:30 2.6M intronEst.sql 2008-03-25 14:30 2.2K intronEst.txt.gz 2008-03-25 14:31 24M keyword.sql 2008-09-09 03:29 1.2K keyword.txt.gz 2008-09-09 03:29 24K library.sql 2008-03-25 14:31 1.2K library.txt.gz 2008-03-25 14:31 48K mgcFullMrna.sql 2008-03-25 14:43 2.1K mgcFullMrna.txt.gz 2008-03-25 14:43 3.4K mgcGenes.sql 2008-03-25 14:43 1.9K mgcGenes.txt.gz 2008-03-25 14:43 2.5K mrnaClone.sql 2008-03-25 14:31 1.2K mrnaClone.txt.gz 2008-03-25 14:31 5.1M mrnaOrientInfo.sql 2008-09-09 03:33 1.7K mrnaOrientInfo.txt.gz 2008-09-09 03:33 607K netHg17.sql 2008-03-25 14:31 2.2K netHg17.txt.gz 2008-03-25 14:33 68M netMm6.sql 2008-03-25 14:34 2.2K netMm6.txt.gz 2008-03-25 14:35 53M organism.sql 2008-09-09 03:29 1.2K organism.txt.gz 2008-09-09 03:29 1.0K productName.sql 2008-09-09 03:30 1.2K productName.txt.gz 2008-09-09 03:30 3.2M quality.sql 2008-03-25 14:36 1.7K quality.txt.gz 2008-03-25 14:38 64M refLink.sql 2008-09-09 03:32 1.6K refLink.txt.gz 2008-09-09 03:32 5.8M refSeqStatus.sql 2008-09-09 03:30 1.4K refSeqStatus.txt.gz 2008-09-09 03:30 724K refSeqSummary.sql 2008-09-09 03:31 1.3K refSeqSummary.txt.gz 2008-09-09 03:31 4.7M rmsk.sql 2008-03-25 14:39 1.9K rmsk.txt.gz 2008-03-25 14:40 101M sex.sql 2008-03-25 14:42 1.2K sex.txt.gz 2008-03-25 14:42 194 simpleRepeat.sql 2008-03-25 14:42 2.0K simpleRepeat.txt.gz 2008-03-25 14:42 6.3M source.sql 2008-09-09 03:30 1.2K source.txt.gz 2008-09-09 03:30 1.4K tableDescriptions.sql 2008-05-18 03:15 1.2K tableDescriptions.txt.gz 2008-05-18 03:15 6.7K tissue.sql 2008-08-05 03:49 1.2K tissue.txt.gz 2008-08-05 03:49 6.3K trackDb.sql 2008-06-01 03:15 2.0K trackDb.txt.gz 2008-06-01 03:15 12K xenoRefFlat.sql 2008-09-09 03:29 1.7K xenoRefFlat.txt.gz 2008-09-09 03:30 12M xenoRefGene.sql 2008-09-09 03:31 1.6K xenoRefGene.txt.gz 2008-09-09 03:32 11M xenoRefSeqAli.sql 2008-09-09 03:33 2.2K xenoRefSeqAli.txt.gz 2008-09-09 03:33 16M