This directory contains the Apis mellifera Amel_2.0 assembly (apiMel2, Jan. 2005) from the Baylor College of Medicine HGSC Honey Bee Genome Project. For more information, see the Baylor website: http://www.hgsc.bcm.tmc.edu/projects/honeybee/. Files included in this directory: md5sum.txt - Checksums of the files in this directory. apiMel2.2bit - contains the complete A. mellifera/apiMel2 genome sequence in the 2bit file format. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are shown in lower case; non-repeating sequence is shown in upper case. The utility program, twoBitToFa (available from the kent src tree), can be used to extract .fa file(s) from this file. A pre-compiled version of the command line tool can be found at: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ See also: http://genome.ucsc.edu/admin/git.html http://genome.ucsc.edu/admin/jk-install.html GroupAgp.zip - Description of how the working draft was generated from fragments at a linkage group layout level. GroupFa.zip - The working draft sequence in one file per linkage group. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are in lower case while non-repeating sequence is in upper case. GroupFaMasked.zip - The working draft sequence in one file per linkage group. Repeats are masked by capital Ns and non-repeating sequence is shown in upper case. GroupOut.zip - RepeatMasker .out file for linkage groups. These were created with RepeatMasker at the -s sensitive setting. GroupTrf.zip - Tandem Repeats Finder locations, filtered to keep repeats with period less than or equal to 12, translated into one .bed file. apiMel2.chrom.sizes - Two-column tab-separated text file containing assembly sequence names and sizes. ----------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/apiMel2/bigZips. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) For conditions of use regarding these data, see http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory - apiMel2.chrom.sizes 2005-02-05 03:35 273 apiMel2.2bit 2005-02-08 02:25 123M GroupFa.zip 2005-02-28 15:43 69M GroupFaMasked.zip 2005-02-28 15:43 62M GroupOut.zip 2005-02-28 15:43 10M GroupTrf.zip 2005-02-28 16:04 1.1M GroupAgp.zip 2005-02-28 16:31 399K md5sum.txt 2014-02-03 11:05 239 apiMel2.fa.gz 2020-01-23 02:17 69M mrna.fa.gz 2020-09-09 17:40 51M mrna.fa.gz.md5 2020-09-09 17:40 45 xenoMrna.fa.gz 2020-09-09 17:50 7.0G xenoMrna.fa.gz.md5 2020-09-09 17:51 49 est.fa.gz 2020-09-09 17:55 13M est.fa.gz.md5 2020-09-09 17:55 44 xenoRefMrna.fa.gz 2020-09-09 17:55 344M xenoRefMrna.fa.gz.md5 2020-09-09 17:55 52