Credits

Peng He (Peng.He@ucsf.edu) was the lead author for this project and performed the data analysis. Diane Trout (diane@caltech.edu) at the Wold Lab, Caltech, was responsible for data management. The data were produced as part of the ENCODE Consortium.

References

Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013 Jan 1;29(1):15-21. PMID: 23104886; PMC: PMC3530905

He P, Williams BA, Trout D, Marinov GK, Amrhein H, Berghella L, Goh ST, Plajzer-Frick I, Afzal V, Pennacchio LA et al. The changing mouse embryo transcriptome at whole tissue and single-cell resolution. Nature. 2020 Jul;583(7818):760-767. PMID: 32728245; PMC: PMC7410830

Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics. 2011 Aug 4;12:323. PMID: 21816040; PMC: PMC3163565