Description

This track container collects variant allele frequencies from population-scale sequencing projects, called against the T2T-CHM13 reference.

Very few projects so far publish variant calls against T2T-CHM13. Most large biobanks and reference databases (gnomAD, TOPMed, UK Biobank, FinnGen, and others) still publish only on GRCh38. The subtracks listed here are the only public population-scale variant frequency callsets we have been able to obtain for CHM13.

If you know of additional variant frequency datasets on T2T-CHM13 that we could add, please contact us at genome@soe.ucsc.edu.

For the full collection of variant frequency tracks on GRCh38, see the hg38 Variant Frequencies track.