#!/bin/tcsh -efx
cd testOut
autoSql test.as testStruct
raToStructGen -testMain test.as testRaToStruct.c -required=readCount,baseCount,readSizeMean,readSizeStd,readSizeMin,readSizeMax,qualMean,qualStd,qualMin,qualMax,qualType,qualZero,atRatio,aRatio,cRatio,gRatio,tRatio,nRatio,qualPos,aAtPos,cAtPos,gAtPos,tAtPos,nAtPos -computed=id,fileId,sampleCount,sampleFileName
make
rehash
testRaToStruct test.ra > test.out
diff test.expected test.out
cd ..
