low-complexity regions

Cent-Sat - Centromeric satellite repeats - gives the approximate locations of centromeric satellite repeats and acrocentric short arms in GRCh38. It was manually constructed based on the official satellite annotation, the DNA-BRNN satellite annotation and where minigraph alignment faded. This file is intended for filtering spurious alignments or variant calls caused by centromeric repeats or acrocentric arms.
Cent-Sat - Centromeric satellite repeats
PAR regions on chrX, chrY - pseudo-autosomal regions (PARs) on chrX and chrY
low-complexity regions excluding alpha and HSAT2/3 satellites - Column 4: "ldust" for longdust regions 50bp or longer; "mg" for regions overlapping with minigraph LCR SVs. Column 5: longest allele in each LCR.
in LCR AND TRF - intersection of LCR track and the trf/simpleRepeats track
in TRF not LCR - regions in trf/simpleRepeat that are not found in LCR
in LCR not TRF - regions in LCR that are not found in trf/simpleRepeat
MHC, T-cell receptor (TCR) and immunoglobulin (Ig) regions
Segmental duplications by merging overlapping regions in genomicSuperDups.txt.gz

Intersections