track rnaSeqStar
compositeTrack on
group regulation
shortLabel RNAseq
longLabel RNAseq analysis and raw data
subGroup1 view Views expression=Expression junction=Splice_Junctions alignment=Alignments
subGroup2 tissue Tissue brain=brain liver=liver
dimensions dimensionX=view dimensionY=tissue
sortOrder view=+ tissue=+
visibility full
dragAndDrop subTracks
type bed 3
noInherit on
html html/rnaSeqStar

    track GCA_001624745.1_NZO_HlLtJ_v1ExpressionStar
    shortLabel GCA_001624745.1_NZO_HlLtJ_v1 Expression
    view expression
    visibility dense
    subTrack rnaSeqStar
    maxHeightPixels 100:24:16
    autoScale on

        track wigStar_GCA_001624745.1_NZO_HlLtJ_v1_brain
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 brain Expression
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_brain_Expression
        parent GCA_001624745.1_NZO_HlLtJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/brain.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=brain

        track wigStar_GCA_001624745.1_NZO_HlLtJ_v1_liver
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver Expression
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_liver_Expression
        parent GCA_001624745.1_NZO_HlLtJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/liver.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=liver

    track GCA_001624745.1_NZO_HlLtJ_v1_Alignments
    shortLabel Raw Alignments
    view alignment
    visibility hide
    subTrack rnaSeqStar

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_brain_ERR033001
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 brain RNASeq Alignments ERR033001
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_ERR033001
        bigDataUrl rnaSeqData/brain.ERR033001.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_brain_ERR033002
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 brain RNASeq Alignments ERR033002
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_ERR033002
        bigDataUrl rnaSeqData/brain.ERR033002.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826364
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826364
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826364
        bigDataUrl rnaSeqData/liver.SRR826364.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826365
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826365
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826365
        bigDataUrl rnaSeqData/liver.SRR826365.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826366
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826366
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826366
        bigDataUrl rnaSeqData/liver.SRR826366.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826367
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826367
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826367
        bigDataUrl rnaSeqData/liver.SRR826367.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826368
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826368
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826368
        bigDataUrl rnaSeqData/liver.SRR826368.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826369
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826369
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826369
        bigDataUrl rnaSeqData/liver.SRR826369.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826370
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826370
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826370
        bigDataUrl rnaSeqData/liver.SRR826370.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826371
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826371
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826371
        bigDataUrl rnaSeqData/liver.SRR826371.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826372
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826372
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826372
        bigDataUrl rnaSeqData/liver.SRR826372.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826373
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826373
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826373
        bigDataUrl rnaSeqData/liver.SRR826373.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826374
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826374
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826374
        bigDataUrl rnaSeqData/liver.SRR826374.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826375
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826375
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826375
        bigDataUrl rnaSeqData/liver.SRR826375.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826376
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826376
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826376
        bigDataUrl rnaSeqData/liver.SRR826376.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826377
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826377
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826377
        bigDataUrl rnaSeqData/liver.SRR826377.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826378
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826378
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826378
        bigDataUrl rnaSeqData/liver.SRR826378.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624745.1_NZO_HlLtJ_v1_liver_SRR826379
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver RNASeq Alignments SRR826379
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_RNASeq_SRR826379
        bigDataUrl rnaSeqData/liver.SRR826379.sortedByCoord.out.bam
        parent GCA_001624745.1_NZO_HlLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

    track GCA_001624745.1_NZO_HlLtJ_v1_SpliceJunctions
    shortLabel Splice Junctions
    view junction
    visibility squish
    subTrack rnaSeqStar

        track GCA_001624745.1_NZO_HlLtJ_v1_brain_SpliceJunctions
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 brain STAR Splice Junctions
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_brain_Splice_Junctions
        parent GCA_001624745.1_NZO_HlLtJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/brain.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=brain

        track GCA_001624745.1_NZO_HlLtJ_v1_liver_SpliceJunctions
        longLabel GCA_001624745.1_NZO_HlLtJ_v1 liver STAR Splice Junctions
        shortLabel GCA_001624745.1_NZO_HlLtJ_v1_liver_Splice_Junctions
        parent GCA_001624745.1_NZO_HlLtJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/liver.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=liver

