track rnaSeqStar
compositeTrack on
group regulation
shortLabel RNAseq
longLabel RNAseq analysis and raw data
subGroup1 view Views expression=Expression junction=Splice_Junctions alignment=Alignments
subGroup2 tissue Tissue brain=brain liver=liver
dimensions dimensionX=view dimensionY=tissue
sortOrder view=+ tissue=+
visibility full
dragAndDrop subTracks
type bed 3
noInherit on
html html/rnaSeqStar

    track GCA_001624675.1_NOD_ShiLtJ_v1ExpressionStar
    shortLabel GCA_001624675.1_NOD_ShiLtJ_v1 Expression
    view expression
    visibility dense
    subTrack rnaSeqStar
    maxHeightPixels 100:24:16
    autoScale on

        track wigStar_GCA_001624675.1_NOD_ShiLtJ_v1_brain
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 brain Expression
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_brain_Expression
        parent GCA_001624675.1_NOD_ShiLtJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/brain.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=brain

        track wigStar_GCA_001624675.1_NOD_ShiLtJ_v1_liver
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver Expression
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_liver_Expression
        parent GCA_001624675.1_NOD_ShiLtJ_v1ExpressionStar off
        type bigWig
        bigDataUrl rnaSeqData/liver.normalized_average_expression.bw
        color 153,38,0
        subGroups view=expression tissue=liver

    track GCA_001624675.1_NOD_ShiLtJ_v1_Alignments
    shortLabel Raw Alignments
    view alignment
    visibility hide
    subTrack rnaSeqStar

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_brain_ERR032989
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 brain RNASeq Alignments ERR032989
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_ERR032989
        bigDataUrl rnaSeqData/brain.ERR032989.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_brain_ERR032990
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 brain RNASeq Alignments ERR032990
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_ERR032990
        bigDataUrl rnaSeqData/brain.ERR032990.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_brain_ERR032991
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 brain RNASeq Alignments ERR032991
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_ERR032991
        bigDataUrl rnaSeqData/brain.ERR032991.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_brain_ERR033017
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 brain RNASeq Alignments ERR033017
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_ERR033017
        bigDataUrl rnaSeqData/brain.ERR033017.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=brain
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826348
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826348
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826348
        bigDataUrl rnaSeqData/liver.SRR826348.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826349
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826349
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826349
        bigDataUrl rnaSeqData/liver.SRR826349.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826350
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826350
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826350
        bigDataUrl rnaSeqData/liver.SRR826350.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826351
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826351
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826351
        bigDataUrl rnaSeqData/liver.SRR826351.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826352
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826352
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826352
        bigDataUrl rnaSeqData/liver.SRR826352.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826353
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826353
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826353
        bigDataUrl rnaSeqData/liver.SRR826353.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826354
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826354
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826354
        bigDataUrl rnaSeqData/liver.SRR826354.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826355
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826355
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826355
        bigDataUrl rnaSeqData/liver.SRR826355.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826356
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826356
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826356
        bigDataUrl rnaSeqData/liver.SRR826356.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826357
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826357
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826357
        bigDataUrl rnaSeqData/liver.SRR826357.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826358
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826358
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826358
        bigDataUrl rnaSeqData/liver.SRR826358.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826359
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826359
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826359
        bigDataUrl rnaSeqData/liver.SRR826359.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826360
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826360
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826360
        bigDataUrl rnaSeqData/liver.SRR826360.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826361
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826361
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826361
        bigDataUrl rnaSeqData/liver.SRR826361.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826362
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826362
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826362
        bigDataUrl rnaSeqData/liver.SRR826362.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

        track bamstar_GCA_001624675.1_NOD_ShiLtJ_v1_liver_SRR826363
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver RNASeq Alignments SRR826363
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_RNASeq_SRR826363
        bigDataUrl rnaSeqData/liver.SRR826363.sortedByCoord.out.bam
        parent GCA_001624675.1_NOD_ShiLtJ_v1_Alignments off
        subGroups view=alignment tissue=liver
        type bam
        indelDoubleInsert on
        indelQueryInsert on
        showNames off
        pairEndsByName on

    track GCA_001624675.1_NOD_ShiLtJ_v1_SpliceJunctions
    shortLabel Splice Junctions
    view junction
    visibility squish
    subTrack rnaSeqStar

        track GCA_001624675.1_NOD_ShiLtJ_v1_brain_SpliceJunctions
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 brain STAR Splice Junctions
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_brain_Splice_Junctions
        parent GCA_001624675.1_NOD_ShiLtJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/brain.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=brain

        track GCA_001624675.1_NOD_ShiLtJ_v1_liver_SpliceJunctions
        longLabel GCA_001624675.1_NOD_ShiLtJ_v1 liver STAR Splice Junctions
        shortLabel GCA_001624675.1_NOD_ShiLtJ_v1_liver_Splice_Junctions
        parent GCA_001624675.1_NOD_ShiLtJ_v1_SpliceJunctions off
        bigDataUrl rnaSeqData/liver.filtered_splice_junctions.bb
        type bigBed 12
        colorByStrand 255,0,0 0,0,255
        subGroups view=junction tissue=liver

