KEEP	assay.core.schema_url	assay.core.schema_url
KEEP	assay.core.schema_version	assay.core.schema_version
KEEP	assay.core.type	assay.core.type
RENAME	assay.id	assay.assay_id
DELETE	assay.rna.core.schema_url
DELETE	assay.rna.core.schema_version
DELETE	assay.rna.core.type
KEEP	assay.rna.end_bias	assay.rna.end_bias
KEEP	assay.rna.library_construction	assay.rna.library_construction
KEEP	assay.rna.library_protocol	assay.rna.library_protocol
KEEP	assay.rna.primer	assay.rna.primer
KEEP	assay.rna.spike_in	assay.rna.spike_in
KEEP	assay.rna.spike_in_dilution	assay.rna.spike_in_dilution
KEEP	assay.rna.strand	assay.rna.strand
KEEP	assay.sample_id	assay.sample_id
DELETE	assay.seq.core.schema_url
DELETE	assay.seq.core.schema_version
DELETE	assay.seq.core.type
RENAME	assay.seq.ena_experiment	assay.seq.insdc_experiment
RENAME	assay.seq.ena_run	assay.seq.insdc_run
KEEP	assay.seq.instrument_model	assay.seq.instrument_model
KEEP	assay.seq.instrument_platform	assay.seq.instrument_platform
KEEP	assay.seq.library_construction	assay.seq.library_construction
KEEP	assay.seq.library_protocol	assay.seq.library_protocol
KEEP	assay.seq.local_machine_name	assay.seq.local_machine_name
KEEP	assay.seq.molecule	assay.seq.molecule
KEEP	assay.seq.paired_ends	assay.seq.paired_ends
RENAME	assay.seq.sra_experiment	assay.seq.insdc_experiment
RENAME	assay.seq.sra_run	assay.seq.insdc_run
DELETE	assay.seq.umi_barcode.core.schema_url
DELETE	assay.seq.umi_barcode.core.schema_version
DELETE	assay.seq.umi_barcode.core.type
KEEP	assay.seq.umi_barcode.offset	assay.seq.umi_barcode.offset
KEEP	assay.seq.umi_barcode.read	assay.seq.umi_barcode.read
KEEP	assay.seq.umi_barcode.size	assay.seq.umi_barcode.size
KEEP	assay.seq.umi_barcode.white_list_file	assay.seq.umi_barcode.white_list_file
DELETE	assay.single_cell.barcode.core.schema_url
DELETE	assay.single_cell.barcode.core.schema_version
DELETE	assay.single_cell.barcode.core.type
RENAME	assay.single_cell.barcode.offset	assay.single_cell.cell_barcode.offset
RENAME	assay.single_cell.barcode.read	assay.single_cell.cell_barcode.read
RENAME	assay.single_cell.barcode.size	assay.single_cell.cell_barcode.size
RENAME	assay.single_cell.barcode.white_list_file	assay.single_cell.cell_barcode.white_list_file
KEEP	assay.single_cell.cell_handling	assay.single_cell.cell_handling
DELETE	assay.single_cell.core.schema_url
DELETE	assay.single_cell.core.schema_version
DELETE	assay.single_cell.core.type
KEEP	project.array_express_investigation	project.array_express_investigation
KEEP	project.contributors.[].address	project.contributors.[].address
KEEP	project.contributors.[].city	project.contributors.[].city
DELETE	project.contributors.[].core.schema_url
DELETE	project.contributors.[].core.schema_version
DELETE	project.contributors.[].core.type
KEEP	project.contributors.[].country	project.contributors.[].country
KEEP	project.contributors.[].country_division	project.contributors.[].country_division
KEEP	project.contributors.[].email	project.contributors.[].email
DELETE	project.contributors.[].id
KEEP	project.contributors.[].institution	project.contributors.[].institution
KEEP	project.contributors.[].laboratory	project.contributors.[].laboratory
KEEP	project.contributors.[].name	project.contributors.[].name
KEEP	project.core.schema_url	project.core.schema_url
KEEP	project.core.schema_version	project.core.schema_version
KEEP	project.core.type	project.core.type
RENAME	project.ddjb_trace	project.insdc_project
KEEP	project.description	project.description
DELETE	project.experimental_design.[].ontology
RENAME	project.experimental_design.[].text	project.experimental_design.[]
KEEP	project.experimental_factor_name	project.experimental_factor_name
KEEP	project.geo_series	project.geo_series
RENAME	project.id	project.project_id
DELETE	project.ncbi_bioproject	project.insdc_study
RENAME	project.protocols.[].batch_number protocols.[].batch_number
RENAME	project.protocols.[].core.schema_url	protocols.[].core.schema_url
RENAME	project.protocols.[].core.schema_version	protocols.[].core.schema_version
RENAME	project.protocols.[].core.type	protocols.[].core.type
RENAME	project.protocols.[].description	protocols.[].description
RENAME	project.protocols.[].id	protocols.[].id
RENAME	project.protocols.[].pdf	protocols.[].pdf
RENAME	project.protocols.[].retail_name	protocols.[].retail_name
RENAME	project.protocols.[].submit_date	protocols.[].submit_date
RENAME	project.protocols.[].submitter_id	protocols.[].submitter_id
RENAME	project.protocols.[].type.ontology	protocols.[].type.ontology	
RENAME	project.protocols.[].type.text		rotocols.[].type.text	
RENAME	project.protocols.[].update_date	protocols.[].update_date
RENAME	project.protocols.[].updater_id	protocols.[].updater_id
KEEP	project.publications.[].authors	project.publications.[].authors
DELETE	project.publications.[].core.schema_url
DELETE	project.publications.[].core.schema_version
DELETE	project.publications.[].core.type
KEEP	project.publications.[].doi	project.publications.[].doi
KEEP	project.publications.[].pmid	project.publications.[].pmid
KEEP	project.publications.[].title	project.publications.[].title
KEEP	project.publications.[].url	project.publications.[].url
KEEP	project.related_projects	project.related_projects
RENAME	project.sra_project	project.insdc_project
DELETE	project.submit_date	project.submit_date
RENAME	project.submitter.address	project.submitters.0.address
RENAME	project.submitter.city	project.submitters.0.city
DELETE	project.submitter.core.schema_url
DELETE	project.submitter.core.schema_version
DELETE	project.submitter.core.type
RENAME	project.submitter.country	project.submitters.0.country
RENAME	project.submitter.country_division	project.submitters.0.country_division
RENAME	project.submitter.email	project.submitters.0.email
DELETE	project.submitter.id
RENAME	project.submitter.institution	project.submitters.0.institution
RENAME	project.submitter.laboratory	project.submitters.0.laboratory
RENAME	project.submitter.name	project.submitters.0.name
NEW		project.submitters.0.phone
KEEP	project.supplementary_files	project.supplementary_files
RENAME	project.title	project.name
KEEP	project.update_date	project.update_date
DELETE	project.updater.address
DELETE	project.updater.city
DELETE	project.updater.core.schema_url
DELETE	project.updater.core.schema_version
DELETE	project.updater.core.type
DELETE	project.updater.country
DELETE	project.updater.country_division
DELETE	project.updater.email
DELETE	project.updater.id
DELETE	project.updater.institution
DELETE	project.updater.laboratory
DELETE	project.updater.name
RENAME	sample.biosd_sample	sample.sample_accessions.biosd_sample
RENAME	sample.body_part.ontology	sample.specimen_from_organism.body_part.ontology
RENAME	sample.body_part.text	sample.specimen_from_organism.body_part.text
RENAME	sample.cell_cycle.ontology	sample.immortalized_cell_line.cell_cycle.ontology
RENAME	sample.cell_cycle.text	sample.immortalized_cell_line.cell_cycle.text
RENAME	sample.cell_line.catalog_number	sample.immortalized_cell_line.catalog_number
RENAME	sample.cell_line.catalog_url	sample.immortalized_cell_line.catalog_url
RENAME	sample.cell_line.cell_type.ontology	sample.immortalized_cell_line.cell_type.ontology
RENAME	sample.cell_line.cell_type.text	sample.immortalized_cell_line.cell_type.text
DELETE	sample.cell_line.core.schema_url
DELETE	sample.cell_line.core.schema_version
DELETE	sample.cell_line.core.type
DELETE	sample.cell_line.culture_protocol
RENAME	sample.cell_line.date_established	sample.immortalized_cell_line.date_established
RENAME	sample.cell_line.derived_from	sample.immortalized_cell_line.derived_from
RENAME	sample.cell_line.disease.ontology	sample.immortalized_cell_line.disease.ontology
RENAME	sample.cell_line.disease.text	sample.immortalized_cell_line.disease.text
RENAME	sample.cell_line.karyotype	sample.immortalized_cell_line.karyotype
RENAME	sample.cell_line.name.ontology	sample.immortalized_cell_line.name.ontology
RENAME	sample.cell_line.name.text	sample.immortalized_cell_line.name.text
RENAME	sample.cell_line.passage_number	sample.immortalized_cell_line.passage_number
RENAME	sample.cell_line.publication.authors	sample.immortalized_cell_line.publication.authors
DELETE	sample.cell_line.publication.core.schema_url
DELETE	sample.cell_line.publication.core.schema_version
DELETE	sample.cell_line.publication.core.type
RENAME	sample.cell_line.publication.doi	sample.immortalized_cell_line.publication.doi
RENAME	sample.cell_line.publication.pmid	sample.immortalized_cell_line.publication.pmid
RENAME	sample.cell_line.publication.title	sample.immortalized_cell_line.publication.title
RENAME	sample.cell_line.publication.url	sample.immortalized_cell_line.publication.url
KEEP	sample.core.schema_url	sample.core.schema_url
KEEP	sample.core.schema_version	sample.core.schema_version
KEEP	sample.core.type	sample.core.type
DELETE	sample.culture_type
DELETE	sample.disassociation_protocol
KEEP	sample.donor.age	sample.donor.age
KEEP	sample.donor.age_unit	sample.donor.age_unit
KEEP	sample.donor.ancestry.[].ontology	sample.donor.ancestry.[].ontology
KEEP	sample.donor.ancestry.[].text	sample.donor.ancestry.[].text
KEEP	sample.donor.body_mass_index	sample.donor.body_mass_index
DELETE	sample.donor.core.schema_url
DELETE	sample.donor.core.schema_version
DELETE	sample.donor.core.type
RENAME	sample.donor.death.cause_of_death	sample.donor.death.cause_of_death.text
NEW		sample.donor.death.cause_of_death.ontology
KEEP	sample.donor.death.cold_perfused	sample.donor.death.cold_perfused
DELETE	sample.donor.death.core.schema_url
DELETE	sample.donor.death.core.schema_version
DELETE	sample.donor.death.core.type
KEEP	sample.donor.death.days_on_ventilator	sample.donor.death.days_on_ventilator
KEEP	sample.donor.death.hardy_scale	sample.donor.death.hardy_scale
KEEP	sample.donor.death.time_of_death	sample.donor.death.time_of_death
KEEP	sample.donor.development_stage.ontology	sample.donor.development_stage.ontology
KEEP	sample.donor.development_stage.text	sample.donor.development_stage.text
KEEP	sample.donor.disease.[].ontology	sample.donor.disease.[].ontology
KEEP	sample.donor.disease.[].text	sample.donor.disease.[].text
KEEP	sample.donor.genotype	sample.donor.genotype
KEEP	sample.donor.height	sample.donor.height
NEW		sample.donor.alcohol_history
NEW		sample.donor.nutritional_state
NEW		sample.donor.smoking_history
KEEP	sample.donor.is_living	sample.donor.is_living
KEEP	sample.donor.life_stage	sample.donor.life_stage
KEEP	sample.donor.medication.[].ontology	sample.donor.medication.[].ontology
KEEP	sample.donor.medication.[].text	sample.donor.medication.[].text
KEEP	sample.donor.sex	sample.donor.sex
RENAME	sample.donor.species.ontology	sample.ncbi_taxon_id
RENAME	sample.donor.species.text	sample.genus_species
KEEP	sample.donor.strain.[].ontology	sample.donor.strain.[].ontology
KEEP	sample.donor.strain.[].text	sample.donor.strain.[].text
KEEP	sample.donor.weight	sample.donor.weight
COMPLEX	sample.donor.id	sample.sample_id
COMPLEX	sample.donor.submitted_id	sample.name
DELETE	sample.ena_sample	sample_accessions.insdc_sample
DELETE	sample.enrichment.[].core.schema_url
DELETE	sample.enrichment.[].core.schema_version
DELETE	sample.enrichment.[].core.type
RENAME	sample.enrichment.[].markers	sample.cell_suspension.enrichment.[].markers
DELETE	sample.enrichment.[].protocol	
RENAME	sample.enrichment.[].size_max	sample.cell_suspension.enrichment.[].size_max
RENAME	sample.enrichment.[].size_min	sample.cell_suspension.enrichment.[].size_min
RENAME	sample.enrichment.[].type	sample.cell_suspension.enrichment.[].type
DELETE	sample.geo_sample
RENAME	sample.id	sample.sample_id
KEEP	sample.name	sample.name
RENAME	sample.ncbi_biosample	sample.sample_accessions.biosd_sample
RENAME	sample.organ.ontology	sample.specimen_from_organism.organ.ontology
RENAME	sample.organ.text	sample.specimen_from_organism.organ.text
RENAME	sample.preservation.autolysis_score	sample.specimen_from_organism.state_of_specimen.autolysis_score
DELETE	sample.preservation.core.schema_url
DELETE	sample.preservation.core.schema_version
DELETE	sample.preservation.core.type
RENAME	sample.preservation.gross_description	sample.specimen_from_organism.state_of_specimen.gross_description
RENAME	sample.preservation.gross_image	sample.specimen_from_organism.state_of_specimen.gross_image
RENAME	sample.preservation.ischemic_time	sample.specimen_from_organism.state_of_specimen.ischemic_time
RENAME	sample.preservation.microscopic_description	sample.specimen_from_organism.state_of_specimen.microscopic_description
RENAME	sample.preservation.microscopic_image	sample.specimen_from_organism.state_of_specimen.microscopic_image
RENAME	sample.preservation.postmortem_interval	sample.specimen_from_organism.state_of_specimen.postmortem_interval
DELETE	sample.preservation.preservation_protocol
DELETE	sample.preservation.storage_protocol
DELETE	sample.project_id
KEEP	sample.protocol_ids	sample.protocol_ids
DELETE	sample.submit_date
DELETE	sample.submitter_id
KEEP	sample.supplementary_files	sample.supplementary_files
RENAME	sample.title	sample.description
RENAME	sample.total_estimated_cells	sample.cell_suspension.total_estimated_cells
DELETE	sample.update_date
DELETE	sample.updater_id
COMPLEX	sample.well.cell_type.ontology	sample.immortalized_cell_line.cell_type.ontology
COMPLEX	sample.well.cell_type.text	sample.immortalized_cell_line.cell_type.text
RENAME	sample.well.col	sample.cell_suspension.well.col
DELETE	sample.well.core.schema_url
DELETE	sample.well.core.schema_version
DELETE	sample.well.core.type
RENAME	sample.well.name	sample.cell_suspension.well.name
RENAME	sample.well.plate	sample.cell_suspension.well.plate
DELETE	sample.well.plating_protocol
RENAME	sample.well.quality	sample.cell_suspension.well.quality
RENAME	sample.well.row	sample.cell_suspension.well.row
NEW		assay.description
NEW		assay.imaging.embedding
NEW		assay.imaging.exposure_time
NEW		assay.imaging.field_counts.[]
NEW		assay.imaging.field_microns.[]
NEW		assay.imaging.field_resolution.[]
NEW		assay.imaging.fixation
NEW		assay.imaging.microscope
NEW		assay.imaging.probes
NEW		assay.name
NEW		project.contributors.[].phone
NEW		project.experimental_design.[].ontology
NEW		project.experimental_design.[].text
NEW		project.insdc_project
NEW		project.name
NEW		sample.donor.alcohol_history
NEW		sample.donor.nutritional_state
NEW		sample.donor.smoking_history
NEW		sample.immortalized_cell_line.disease.ontology
NEW		sample.immortalized_cell_line.disease.text
NEW		sample.ncbi_taxon_id
NEW		sample.organoid.model_for_organ.ontology
NEW		sample.organoid.model_for_organ.text
NEW		sample.primary_cell_line.cell_cycle.ontology
NEW		sample.primary_cell_line.cell_cycle.text
NEW		sample.primary_cell_line.cell_type.ontology
NEW		sample.primary_cell_line.cell_type.text
NEW		sample.primary_cell_line.date_established
NEW		sample.primary_cell_line.disease.ontology
NEW		sample.primary_cell_line.disease.text
NEW		sample.primary_cell_line.passage_number
