HANDADD	assay.core.id
RENAME	assay.ena_experiment	assay.seq.ena_experiment
RENAME	assay.ena_run	assay.seq.ena_run
MODIFY	assay.files	assay.seq.lane_REFORMAT_NEEDED
RENAME	assay.rna.prep	assay.rna.library_construction
KEEP	assay.rna.primer	assay.rna.primer
KEEP	assay.rna.spike_in	assay.rna.spike_in
KEEP	assay.rna.spike_in_dilution	assay.rna.spike_in_dilution
KEEP	assay.rna.strand	assay.rna.strand
HANDADD	assay.rna.end_bias
RENAME	assay.seq.machine	assay.seq.instrument_model
HANDADD	assay.instrument_platform
KEEP	assay.seq.molecule	assay.seq.molecule
KEEP	assay.seq.paired_ends	assay.seq.paired_ends
RENAME	assay.seq.prep	assay.seq.library_construction
KEEP	assay.seq.umi_barcode_offset	assay.seq.umi_barcode_offset
KEEP	assay.seq.umi_barcode_read	assay.seq.umi_barcode_read
KEEP	assay.seq.umi_barcode_size	assay.seq.umi_barcode_size
RENAME	assay.single_cell.cell_barcode_offset	assay.single_cell.barcode_offset
RENAME	assay.single_cell.cell_barcode_read	assay.single_cell.barcode_read
RENAME	assay.single_cell.cell_barcode_size	assay.single_cell.barcode_size
RENAME	assay.single_cell.method	assay.single_cell.cell_handling
RENAME	assay.sra_experiment	assay.seq.sra_experiment
RENAME	assay.sra_run	assay.seq.sra_run
DELETE	assay.submitted_file_names
RENAME	cell.cell_cycle	sample.cell_cycle.text
RENAME	cell.characteristics_cd10	sample.characteristics_cd10
RENAME	cell.characteristics_cd135	sample.characteristics_cd135
RENAME	cell.characteristics_cd34	sample.characteristics_cd34
RENAME	cell.characteristics_cd38	sample.characteristics_cd38
RENAME	cell.characteristics_cd45ra	sample.characteristics_cd45ra
RENAME	cell.characteristics_cd49f	sample.characteristics_cd49f
RENAME	cell.characteristics_cd7	sample.characteristics_cd7
RENAME	cell.characteristics_cd90	sample.characteristics_cd90
RENAME	cell.characteristics_facs_time	sample.characteristics_facs_time
RENAME	cell.characteristics_fsc_a	sample.characteristics_fsc_a
RENAME	cell.characteristics_fsc_h	sample.characteristics_fsc_h
RENAME	cell.characteristics_fsc_w	sample.characteristics_fsc_w
RENAME	cell.characteristics_lin	sample.characteristics_lin
RENAME	cell.characteristics_ssc-w	sample.characteristics_ssc-w
RENAME	cell.characteristics_ssc_a	sample.characteristics_ssc_a
RENAME	cell.characteristics_ssc_h	sample.characteristics_ssc_h
RENAME	cell.id	sample.well.core.id
RENAME	cell.ontology	sample.well.cell_type.ontology
RENAME	cell.type	sample.well.cell_type.text
RENAME	cell.well_quality	sample.well.quality
RENAME	project.array_express.accession	project.array_express_investigation
DELETE	project.array_express.experiment_type
RENAME	project.array_express.related_experiment project.related_projects
DELETE	project.array_express.term_source_file
DELETE	project.array_express.term_source_name
RENAME	project.contact.address	project.submitter.address
RENAME	project.contact.city	project.submitter.city
RENAME	project.contact.country	project.submitter.country
DELETE	project.contact.department
RENAME	project.contact.email	project.submitter.email
RENAME	project.contact.institute	project.submitter.institution
RENAME	project.contact.laboratory	project.submitter.laboratory
RENAME	project.contact.name	project.submitter.name
DELETE	project.contact.phone
DELETE	project.contact.postal_code
RENAME	project.contact.state	project.submitter.country_division
DELETE	project.contact.street_address
MODIFY	project.contributor	project.contributors
RENAME	project.ddjb_trace_project	project.ddjb_trace
KEEP	project.experimental_factor_name	project.experimental_factor_name
DELETE	project.geo_doc_id
DELETE  project.geo_parent_series
RENAME	project.array_express.related_experiment project.related_projects
KEEP	project.geo_series	project.geo_series
RENAME	project.id	project.core.id
RENAME	project.last_update_date	project.update_date
DELETE	project.mage_tab_version	project.mage_tab_version
KEEP	project.ncbi_bioproject	project.ncbi_bioproject
RENAME	project.overall_design	project.experimental_design.1.text
RENAME	project.pmid	project.publications.1.pmid
RENAME	project.publication_author_list	project.publications.1.author_list
DELETE	project.release_status
KEEP	project.sra_project	project.sra_project
RENAME	project.submission_date	project.submit_date
RENAME	project.summary	project.description
KEEP	project.supplementary_files	project.supplementary_files
KEEP	project.title	project.title
DELETE	project.uuid
KEEP	sample.biosd_sample	sample.biosd_sample
RENAME	sample.body_part.cell_count	sample.total_estimated_cells
RENAME	sample.body_part.name	sample.body_part.text
RENAME	sample.body_part.ontology	sample.body_part.ontology
RENAME	sample.body_part.organ	sample.organ.text
RENAME	sample.body_part.organ_ontology	sample.organ.ontology
DELETE	sample.body_part.source
RENAME	sample.cell_line	sample.cell_line.name.text
KEEP	sample.characteristics_c1_chip_id	sample.characteristics_c1_chip_id
KEEP	sample.characteristics_cef	sample.characteristics_cef
KEEP	sample.characteristics_clone.info	sample.characteristics_clone.info
KEEP	sample.characteristics_cross	sample.characteristics_cross
KEEP	sample.characteristics_donor_age	sample.characteristics_donor_age
KEEP	sample.characteristics_experiment_sample_name	sample.characteristics_experiment_sample_name
KEEP	sample.characteristics_facs_gating	sample.characteristics_facs_gating
KEEP	sample.characteristics_inferred_cell_type	sample.characteristics_inferred_cell_type
KEEP	sample.characteristics_plate	sample.characteristics_plate
KEEP	sample.characteristics_time	sample.characteristics_time
DELETE	sample.data_processing
KEEP	sample.donor.age	sample.donor.age
KEEP	sample.donor.age_unit	sample.donor.age_unit.text
KEEP	sample.donor.body_mass_index	sample.donor.body_mass_index
RENAME	sample.donor.development_stage	sample.donor.development_stage.text
RENAME	sample.donor.disease	sample.donor.disease.1.text
RENAME	sample.donor.ethnicity	sample.donor.ancestry.1.text
KEEP	sample.donor.genotype	sample.donor.genotype
RENAME	sample.donor.id	sample.donor.submitted_id
KEEP	sample.donor.life_stage sample.donor.life_stage
RENAME	sample.donor.medication	sample.donor.medication.1.text
RENAME	sample.donor.ncbi_taxon	sample.donor.species.ontology
KEEP	sample.donor.sex	sample.donor.sex
RENAME	sample.donor.species	sample.donor.species.text
RENAME	sample.donor.strain	sample.donor.strain.1.text
RENAME	sample.donor.uuid	sample.donor.core.id
KEEP	sample.ena_sample	sample.ena_sample
KEEP	sample.geo_sample	sample.geo_sample
RENAME	sample.id	sample.submitter_id
RENAME	sample.last_update_date	sample.update_date
RENAME	sample.long_label	sample.title
KEEP	sample.ncbi_biosample	sample.ncbi_biosample
RENAME	sample.passage_number	sample.cell_line.passage_number
MODIFY	sample.protocol_types	project.protocols.1.type
MODIFY	sample.protocols	project.protocols.1.description
RENAME	sample.short_label	sample.name
RENAME	sample.storage	sample.preservation.storage_protocol.description
RENAME	sample.submission_date	sample.submit_date
KEEP	sample.supplementary_files	sample.supplementary_files
RENAME	sample.treatment.culture_type	sample.culture_type
RENAME	sample.treatment.enrichment	sample.enrichment.markers
RENAME	sample.treatment.enrichment_method	sample.enrichment.protocol.text
RENAME	sample.uuid	sample.core.id
