#!/bin/bash -e
set -beEu -o pipefail
if [ $# != 1 ] ; then
    echo "wrong # args $0 gfServer" >&2
    exit 1
fi
testName=$(basename $0)
gfServer=$1

# build index
gfRootDir=output/${testName}_root
gfDir=${gfRootDir}/crea
rm -rf $gfDir
mkdir -p $gfDir
cp -f input/creaGeno.2bit $gfDir/crea.2bit
$gfServer index $gfDir/crea.untrans.gfidx $gfDir/crea.2bit >/dev/null

# test query

./dynTester --gfServer=${gfServer} $gfRootDir query crea crea input/crea.mrna output/${testName}.ver.out
sed -e 's/^version .*$/version XXX/' output/${testName}.ver.out > output/${testName}.out
diff -u expected/${testName}.out output/${testName}.out
